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Ponds, wetlands, and shallow lakes (collectively "shallow waterbodies") are among the most biogeochemically active freshwater ecosystems. Measurements of gross primary production (GPP), respiration (R), and net ecosystem production (NEP) are rare in shallow waterbodies compared to larger and deeper lakes, which can bias our understanding of lentic ecosystem processes. In this study, we calculated GPP, R, and NEP in 26 small, shallow waterbodies across temperate North America and Europe. We observed high rates of GPP (mean 8.4 g O2 m−3 d−1) and R (mean −9.1 g O2 m−3 d−1), while NEP varied from net heterotrophic to autotrophic. Metabolism rates were affected by depth and aquatic vegetation cover, and the shallowest waterbodies had the highest GPP, R, and the most variable NEP. The shallow waterbodies from this study had considerably higher metabolism rates compared to deeper lakes, stressing the importance of these systems as highly productive biogeochemical hotspots. Plain Language Summary: Ecosystem metabolism is an important metric for understanding how an ecosystem uses and transforms energy and materials. In aquatic ecosystems, ecosystem metabolism is most often calculated by measuring oxygen. Oxygen is produced by aquatic plants and algae through photosynthesis, and oxygen is consumed by bacteria and other organisms through aerobic respiration. Oxygen production and consumption (metabolism) indicate how organic matter is flowing through the ecosystem, and whether an aquatic system is predominantly respiring (indicating it is a carbon source), or photosynthesizing (indicating it is a carbon sink). Metabolism rates in freshwater lakes scale with surface area and depth, but there are few metabolism rates calculated from oxygen measurements in shallow waterbodies. Ponds, wetlands, and shallow lakes are the most abundant freshwater systems on Earth and may function differently from larger lakes. In this study, we show that shallow systems are incredibly productive, with some of the highest rates of metabolism among aquatic ecosystems, and that depth is one of the most important factors affecting metabolism rates. Key Points: Shallow and small waterbodies have high but variable rates of gross primary production and respirationDepth plays a large role in metabolism ratesShallow waterbodies are some of the most productive freshwater ecosystems, with implications for carbon cycling and ecosystem dynamics [ABSTRACT FROM AUTHOR]

Abstract Ponds, wetlands, and shallow lakes (collectively “shallow waterbodies”) are among the most biogeochemically active freshwater ecosystems. Measurements of gross primary production (GPP), respiration (R), and net ecosystem production (NEP) are rare in shallow waterbodies compared to larger and deeper lakes, which can bias our understanding of lentic ecosystem processes. In this study, we calculated GPP, R, and NEP in 26 small, shallow waterbodies across temperate North America and Europe. We observed high rates of GPP (mean 8.4 g O2 m−3 d−1) and R (mean −9.1 g O2 m−3 d−1), while NEP varied from net heterotrophic to autotrophic. Metabolism rates were affected by depth and aquatic vegetation cover, and the shallowest waterbodies had the highest GPP, R, and the most variable NEP. The shallow waterbodies from this study had considerably higher metabolism rates compared to deeper lakes, stressing the importance of these systems as highly productive biogeochemical hotspots.

River ecosystem function depends on flow regimes that are increasingly modified by changes in climate, land use, water extraction, and flow regulation. Given the wide range of variation in flow regime modifications and autotrophic communities in rivers, it has been challenging to predict which rivers will be more resilient to flow disturbances. To better understand how river productivity is disturbed by and recovers from high-flow disturbance events, we used a continental-scale dataset of daily gross primary production time series from 143 rivers to estimate growth of autotrophic biomass and ecologically relevant flow disturbance thresholds using a modified population model. We compared biomass recovery rates across hydroclimatic gradients and catchment characteristics to evaluate macroscale controls on ecosystem recovery. Estimated biomass accrual (i.e., recovery) was fastest in wider rivers with less regulated flow regimes and more frequent instances of biomass removal during high flows. Although disturbance flow thresholds routinely fell below the estimated bankfull flood (i.e., the 2-y flood), a direct comparison of disturbance flows estimated by our biomass model and a geomorphic model revealed that biomass disturbance thresholds were usually greater than bed disturbance thresholds. We suggest that primary producers in rivers vary widely in their capacity to recover following flow disturbances, and multiple, interacting macroscale factors control productivity recovery rates, although river width had the strongest overall effect. Biomass disturbance flow thresholds varied as a function of geomorphology, highlighting the need for data such as bed slope and grain size to predict how river ecosystems will respond to changing flow regimes. [ABSTRACT FROM AUTHOR]

Daily, seasonal, and interannual/austral spring (among austral springs only) responses of total ecosystem metabolism (EM) were studied for the first time for the Patos Lagoon estuary using Odum's Open-Water method. The method was applied from 2016 to 2021 for a channel-site in the inner part of the estuary. The main objective was to determine the driving factors that control EM at different timescales. Net EM (NEM) was heterotrophic throughout the year (mean; standard error: − 193.8; 7.8 mmol O2 m−2 day−1), with gross primary production (GPP) of 89.7 ± 3.7 mmol O2 m−2 day−1 and community respiration (CR) of − 281.6 ± 10 mmol O2 m−2 day−1. Annual GPP was estimated at 298.8 g C m−2 year−1. Higher EM rates were observed during the austral spring/summer and lower rates during the fall/winter. Smaller timescales and spring/summer exhibited greater fluctuations than long-term and other seasons. The high net heterotrophy was attributed to high turbidity and local depth, in which the majority of water column is below the euphotic zone, where respiration prevails. EM rates were mainly controlled by hydrodynamics: daily by wind-induced short-term salinity changes due to shifts in inflow/outflow of marine/estuarine waters, and photosynthetically active radiation (PAR); seasonally by the freshwater flow regime (drought and flood seasons), which induced changes in the primary production co-limiting factors such as turbidity and nutrient availability, as well as organic matter supply and decomposition (nutrients and organic matter inferred from turbidity); and interannual/austral spring also by the freshwater flow regime, but related to extreme conditions caused by weather/climatic phenomena. In the spring of 2016, an extratropical cyclone occurred with heavy rainfall and freshwater flow, resulting in unusually high EM rates over the following 2 months. The first total EM estimates for the Patos Lagoon estuary, from daily to interannual/austral spring bases, showed the importance of total EM estimates for providing a basis for studies on the effects of climate change on EM of the Patos Lagoon estuary. [ABSTRACT FROM AUTHOR]

Studies of stream ecosystem metabolism over decades are rare and focused on responses to a single factor, e.g., nutrient reduction or storms. Numerous studies document that light, temperature, allochthonous inputs, nutrients, and flow affect metabolism. We use measurements spanning ~ 40 years to examine the interplay of all these influences on metabolism in forested and meadow reaches of a rural stream in southeastern Pennsylvania, USA. Measurements made in 1971–1975 used benthic substrata transferred to chambers (Period 1, P1), and ones in 1997–2010 used open system methodology (P2). Metabolism was greater in the Meadow reach both periods. Gross primary productivity (GPP) was driven primarily by light and chlorophyll, and respiration (R) by temperature and inclusion of hyporheic metabolism. Annually, processes were nearly balanced (Forested reach) or dominated by autotrophy (Meadow reach) in P1. Heterotrophy predominated in both reaches in P2, fueled by litter inputs (Forested reach) and fine particulate organic matter from the agricultural watershed (Meadow reach). Storms reduced GPP, R, and chlorophyll in proportion to storm size, but had less influence than other environmental factors. Riparian-zone reforestation of the P1 Meadow reach resulted in incident light and GPP similar to that in the permanent Forested reach within ~ 20 years. [ABSTRACT FROM AUTHOR]

We rarely consider light limitation in ecosystem productivity, yet light limitation is a major constraint on river autotrophy. Because the light that reaches benthic autotrophs must first pass through terrestrial vegetation and an overlying water column that can be loaded with sediments or colored organic material, there is strong selection for river autotrophs to have high light use efficiencies (LUEs), that is, the efficiency at which light energy is converted to biomass. In contrast to prior studies that have estimated river LUE on single days, we calculated continuous LUE over more than 6 full years for 64 free‐flowing rivers across the United States. This dataset represents the largest compilation of continuous estimates of daily rates of gross primary productivity (GPP) and daily light inputs from which we calculated daily estimates of LUE. Early estimates of LUE in rivers found that clearwater springs with stable flows could achieve LUEs of 4%, much higher than LUEs reported for terrestrial plants. We found that 53% of the rivers in our dataset have LUEs that exceed 4% on at least one day of their time series. Because of the high variability in daily LUE, measurements taken on any given day may misrepresent a river ecosystem's annual LUE. Though most rivers share a high potential, the mean annual LUE of all rivers in our dataset is much lower, only 0.5%. We found that rivers with more variable flow regimes had lower annual LUEs, which indicates that LUE is constrained by hydrologic disturbances that remove, bury, or shade autotrophic biomass. Comparisons of LUE across ecosystems allow us to reframe our view of rivers, by recognizing the high efficiency with which they convert light to biomass compared with lentic, marine, and terrestrial ecosystems. [ABSTRACT FROM AUTHOR]

Anthropogenic increases in nitrogen (N) and phosphorus (P) concentrations can strongly influence the structure and function of ecosystems. Even though lotic ecosystems receive cumulative inputs of nutrients applied to and deposited on land, no comprehensive assessment has quantified nutrient-enrichment effects within streams and rivers. We conducted a meta-analysis of published studies that experimentally increased concentrations of N and/or P in streams and rivers to examine how enrichment alters ecosystem structure (state: primary producer and consumer biomass and abundance) and function (rate: primary production, leaf breakdown rates, metabolism) at multiple trophic levels (primary producer, microbial heterotroph, primary and secondary consumers, and integrated ecosystem). Our synthesis included 184 studies, 885 experiments, and 3497 biotic responses to nutrient enrichment. We documented widespread increases in organismal biomass and abundance (mean response = +48%) and rates of ecosystem processes (+54%) to enrichment across multiple trophic levels, with no large differences in responses among trophic levels or between autotrophic or heterotrophic food-web pathways. Responses to nutrient enrichment varied with the nutrient added (N, P, or both) depending on rate versus state variable and experiment type, and were greater in flume and whole-stream experiments than in experiments using nutrient-diffusing substrata. Generally, nutrient-enrichment effects also increased with water temperature and light, and decreased under elevated ambient concentrations of inorganic N and/or P. Overall, increased concentrations of N and/or P altered multiple food-web pathways and trophic levels in lotic ecosystems. Our results indicate that preservation or restoration of biodiversity and ecosystem functions of streams and rivers requires management of nutrient inputs and consideration of multiple trophic pathways.

Abstract We rarely consider light limitation in ecosystem productivity, yet light limitation is a major constraint on river autotrophy. Because the light that reaches benthic autotrophs must first pass through terrestrial vegetation and an overlying water column that can be loaded with sediments or colored organic material, there is strong selection for river autotrophs to have high light use efficiencies (LUEs), that is, the efficiency at which light energy is converted to biomass. In contrast to prior studies that have estimated river LUE on single days, we calculated continuous LUE over more than 6 full years for 64 free‐flowing rivers across the United States. This dataset represents the largest compilation of continuous estimates of daily rates of gross primary productivity (GPP) and daily light inputs from which we calculated daily estimates of LUE. Early estimates of LUE in rivers found that clearwater springs with stable flows could achieve LUEs of 4%, much higher than LUEs reported for terrestrial plants. We found that 53% of the rivers in our dataset have LUEs that exceed 4% on at least one day of their time series. Because of the high variability in daily LUE, measurements taken on any given day may misrepresent a river ecosystem's annual LUE. Though most rivers share a high potential, the mean annual LUE of all rivers in our dataset is much lower, only 0.5%. We found that rivers with more variable flow regimes had lower annual LUEs, which indicates that LUE is constrained by hydrologic disturbances that remove, bury, or shade autotrophic biomass. Comparisons of LUE across ecosystems allow us to reframe our view of rivers, by recognizing the high efficiency with which they convert light to biomass compared with lentic, marine, and terrestrial ecosystems.

Empirical evidence and theory suggest that climate warming and an increase in the frequency and duration of drying events will alter the metabolic balance of freshwater ecosystems. However, the impacts of climate change on ecosystem metabolism may depend on whether energy inputs are of autochthonous or allochthonous origin. To date, few studies have examined how warming and drying may interact to alter stream metabolism, much less how their impacts may depend on the energy‐base of the food web.To address this research gap, we conducted a multi‐factorial experiment using outdoor mesocosms to investigate the individual and synergistic effects of warming and drought on metabolic processes in stream mesocosms with green (algal‐based) vs. mixed (algal‐ and detritus‐based) vs. brown (detritus‐based) energy pathways.We set up 48 mesocosms with one of three different levels of shade and leaf litter input combinations to create mesocosms with different primary energy channels. In addition, we warmed half of the mesocosms by ~2–3°C. We assessed changes in ecosystem respiration (ER), gross primary production (GPP), net ecosystem production (NEP) and organic matter biomass in warmed and ambient temperature mesocosms before a 24 day drying event and after rewetting.Surprisingly, experimental warming had little effect on metabolic processes. Drying, however, led to decreased rates of ER and GPP and led to an overall reduction in NEP. Although the effects of drying were similar across energy channel treatments, reductions in ER and GPP were primarily driven by decreases in biomass of benthic and filamentous algae.Overall, we demonstrate that drying led to lower rates of NEP in mesocosms regardless of energy inputs. While warming showed little effect in our study, our results suggest that an increase in the frequency of stream drying events could greatly alter the metabolic balance of many aquatic ecosystems. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Ecosystem metabolism is a vital measurement for understanding the dynamics of aquatic environments. China has a range of aquatic resources and in the past two decades, there has been an increasing interest in ecosystem metabolism research. However, no studies have evaluated overall variation and environmental patterns which affect metabolism in China's vast range of aquatic systems. For this paper, we searched for articles with metabolism data for China's major rivers and coastal zones from 2000 to 2020. We identified 127 studies documenting ecosystem metabolism functions including primary production (PP), community respiration (CR) and net ecosystem production (NEP). Using path analysis, we documented relationships across a range of environmental parameters. Light availability affected riverine and coastal PP (<0.1–10.7 gC m−2 day−1), while riverine PP was also linked to precipitation, photosynthesis‐related biomass, and land‐use variables. Riverine and coastal CR ranged from 0.01 to 24.3 gC m−2 day−1 and was affected strongly by nutrient concentrations. Average NEP ranged from 2.9 to 9.2 gC m−2 day−1, suggesting the potential of some of the evaluated ecosystems to be CO2 sinks. Within this review, the large spatiotemporal range allows for a wide‐ranging understanding of the variation of metabolic processes which contribute to CO2 dynamics and the role of aquatic ecosystems in regional climate change. Additionally, by evaluating aquatic ecosystem metabolism across such a diverse range of environmental conditions this work provides a scientific basis for future assessments of ecological risks under the complex conditions of climate change. This article is categorized under:Science of Water > Water QualityScience of Water > Water and Environmental ChangeWater and Life > Nature of Freshwater Ecosystems [ABSTRACT FROM AUTHOR]

There are still significant uncertainties in the magnitude and direction of carbon fluxes through coastal ecosystems. An important component of these biogeochemical budgets is ecosystem metabolism, the net result of organismal metabolic processes within an ecosystem. In this paper, I present a synthesis of published ecosystem metabolism studies from coastal ecosystems and describe an empirical observation that size-dependent patterns in aquatic gross primary production and community respiration exist across a wide range of coastal geomorphologies. Ecosystem metabolism scales to the 3/4 power with volume in deeper estuaries dominated by pelagic primary production and nearly linearly with area in shallow estuaries dominated by benthic primary production. These results can be explained by applying scaling arguments for efficient, directed transport networks developed to explain similar size-dependent patterns in organismal metabolism. The main conclusion from this synthesis is that the residence time of new, nutrient-rich water is a fundamental organizing principle for the observed patterns. Residence time changes allometrically with size in pelagic ecosystems because velocities change by only an order of magnitude across systems that span more than ten orders of magnitude in size. This nonisometric change in velocity with size requires lower specific metabolic rates at larger ecosystem sizes. This change in transport may also explain a shift from predominantly net heterotrophy to net autotrophy with increasing size. The scaling results are applied to the total estuarine area in the continental United States to estimate the contribution of estuarine systems to the overall coastal budget of organic carbon.

Long-term and seasonal changes in production and respiration were surveyed in the Valle de Bravo reservoir, Mexico, in a period during which high water-level fluctuations occurred (2006-2015). We assessed the community metabolism through oxygen dynamics in this monomictic water-body affected by strong diurnal winds. The multiple-year data series allowed relationships with some environmental drivers to be identified, revealing that water level-fluctuations strongly influenced gross primary production and respiratory rates. Production and respiration changed mainly vertically, clearly in relation to light availability. Gross primary production ranged from 0.15 to 1.26 gO2 m-2 h-1, respiration rate from -0.13 to -0.83 gO2  m-2 h-1 and net primary production from -0.36 to 0.66 gO2  m-2 h -1 within the production layer, which had a mean depth of 5.9 m during the stratification periods and of 6.8 m during the circulations. The greater depth of the mixing layer allowed the consumption of oxygen below the production layer even during the stratifications, when it averaged 10.1 m. Respiration below the production layer ranged from -0.23 to -1.38 gO2 m-2 h-1. Vertically integrated metabolic rates (per unit area) showed their greatest variations at the intra-annual scale (stratification-circulation). Gross primary production and Secchi depth decreased as the mean water level decreased between stratification periods. VB is a highly productive ecosystem; its gross primary production averaged 3.60 gC m-2 d-1 during the 10 years sampled, a rate similar to that of hypertrophic systems. About 45% of this production, an annual average net carbon production of 599 g C m-2 year-1, was exported to the hypolimnion, but on the average 58% of this net production was recycled through respiration below the production layer. Overall, only 19% of the carbon fixed in VB is buried in the sediments. Total ecosystem respiration rates averaged -6.89 gC  m-2 d-1 during 2006-2015, doubling the gross production rates. The reservoir as a whole exhibited a net heterotrophic balance continuously during the decade sampled, which means it has likely been a net carbon source, potentially releasing an average of 3.29 gC m-2 d-1 to the atmosphere. These results are in accordance with recent findings that tropical eutrophic aquatic ecosystems can be stronger carbon sources than would be extrapolated from temperate systems, and can help guide future reassessments on the contribution of tropical lakes and reservoirs to carbon cycles at the global scale. Respiration was positively correlated with temperature both for the stratification periods and among the circulations, suggesting that the contribution of C to the atmosphere may increase as the reservoirs and lakes warm up owing to climate change and as their water level is reduced through intensification of their use as water sources.

We characterized five years of seasonal metabolic patterns in two tidal sloughs in Lower South San Francisco Bay, one surrounded by a broad tidal marsh and the other connected to restored salt ponds (ponds). Despite comparable seasonal dissolved oxygen (DO) patterns, the two sloughs exhibited markedly different seasonal metabolic rates. The in-depth analysis of these small intertidal systems reveals the complexity of processes at work in the fringing habitats of larger estuaries. In the marsh-connected slough, respiration rates peaked in summer (~10 g O 2 / m 2 / d ), coincident with highly dynamic net ecosystem production rates (NEP). The peaks in DO consumption were correlated with temperature and tidal elevation. The most negative NEP rates were associated with the highest nighttime tides, when strong over-marsh respiration rates cannot be balanced by production. Thus, the combination of warmer water and the coincidence of higher-high tides with dark hours during summer may largely explain seasonal DO patterns in the marsh-connected slough. In the pond-connected slough, strong net heterotrophy (NEP < -20 g O 2 / m 2 / d ) correlated with peak phytoplankton production and export from the adjacent ponds in spring, consistent with the hypothesis that organic matter exported from the pond exerts oxygen demand in the turbid slough. The impact of the elevated spring respiration rates appears to be offset by the super-oxygen-saturated water entering the slough from the highly productive pond. Oxygen minima in the slough (< 5 g / m 3) occurred in summer when outflow from the pond was lower in DO, coinciding with weaker, but still very high, in-slough respiration (~ 10 g O 2 / m 2 / d ). [ABSTRACT FROM AUTHOR]

Dam reservoirs in headwater catchments, as critical zones for their proximity to terrestrial sources, play important roles in dissolved organic carbon (DOC) cycling. However, the effects of ecosystem metabolism (EM) on DOC cycling are not well known. Here, in-situ diurnal and monthly observations were conducted to measure EM (including gross primary production (GPP), ecosystem respiration (ER) and heterotrophic respiration (HR)), DOC turnover and CO 2 emissions in a headwater catchment reservoir in Southeastern China in 2020. Our study showed the nocturnal CO 2 emission rate was about twice as high as in daytime, and was strongly driven by EM. The values for DOC turnover velocity ranged from 0.10 to 1.59 m/day, and the average DOC turnover rate was 0.13 day−1, with the average removal efficiency of 12%. The contribution of respired DOC to daily CO 2 emissions ranged from 17% to 61%. The accumulated efficiencies were estimated to be 13% for the selected 15 reservoirs throughout the Changjiang River network, corresponding to about 0.34 Tg C/year of the respired DOC. The modified CO 2 flux was 0.75 Tg C/year, and respired DOC accounted for about 45% of total emitted CO 2 from the 15 larger reservoirs. Our research emphasizes the necessity of incorporating the effects of EM into studies of reservoir DOC removal and CO 2 emissions. [Display omitted] [ABSTRACT FROM AUTHOR]

Beavers can modify the hydrology, morphology, chemistry, and biology of ecosystems, though we have limited understanding of how beaver activity alters whole-ecosystem functions. We analyzed the effect of beaver activity and beaver dams on ecosystem metabolism in sub-Antarctic streams and rivers, where beavers are a non-native species. We characterized ecosystem metabolism (gross primary production and ecosystem respiration, GPP and ER) during 1–4 days in six streams and rivers with current beaver activity and dams (active) and three streams with no dams and no beavers (abandoned) as follows: Current beaver activity enhanced metabolism; GPP and ER were higher in sites with beaver activity than in more heterotrophic, abandoned sites. Beavers affect whole-ecosystem metabolism despite no detectable effects on physical and chemical variables in sub-Antarctic streams and rivers. [ABSTRACT FROM AUTHOR]

Stream ecosystem metabolism contributes to global carbon cycling, yet predicting metabolism across ecosystems remains elusive. Even within stream segments, spatial variation in metabolic rates and their controls can be substantial, exhibiting sudden rather than continuous changes. We measured metabolism at 6 sites along a 75-km mainstem segment of Marsh Creek, Idaho. This agricultural stream lacks major geomorphic transitions such as tributaries or changes in valley width, but possesses patchy patterns of turbidity. We asked: (1) How variable is metabolism along this segment, and (2) How do the controls on metabolism vary along this segment? Metabolism varied several-fold along this stream segment. Average rates of gross primary production (GPP), ecosystem respiration (ER), and net ecosystem production (NEP) among sites did not correlate with water quality or aquatic macrophyte cover. Rather, reaches along this segment appear to represent different process domains that were characterized by turbidity: More turbid reaches saw negative effects of turbidity on GPP and NEP and positive effects on ER. Turbidity was associated with increased respiration and decoupled ER from GPP at turbid sites. Less turbid sites had stronger coupling between GPP and ER, and GPP was predicted by light and temperature. Heterogeneous sediment supply and transport capacity along Marsh Creek create patchy patterns of turbidity, which affects the controls on metabolism. Geomorphic controls on ecosystem processes are complex but not random. Understanding how metabolism and its controls vary across process domains is needed to scale up process rates and understand how process rates might respond to future changes. [ABSTRACT FROM AUTHOR]

Primary production is a fundamental ecosystem process that influences nutrient and carbon cycling, and trophic structure in streams. The magnitude and timing of gross primary production (GPP) are typically controlled by hydrology, light, nutrient availability and grazers. Estimates of GPP and its drivers in high‐mountain streams remain elusive at present.We estimated GPP in streams typical for high‐mountain catchments, namely a glacier‐fed, groundwater‐fed (krenal) and a snowmelt‐fed (nival) stream. Using high‐resolution sensor data over 2 years in combination with numerical simulations of stream hydraulics, we studied the periods of GPP characteristic for these streams, as well as their major drivers.Favourable windows for GPP were constrained to periods at the onset of the snowmelt and its recession, when photosynthetic active radiation at the streambed and streambed stability facilitated GPP.During these windows of opportunity, GPP was higher in the nival stream (3.7 ± 3.4 g O2 m−2 day−1), followed by the glacier‐fed (1.5 ± 1.6 g O2 m−2 day−1) and the krenal streams (0.6 ± 0.6 g O2 m−2 day−1). GPP was largely controlled by photosynthetic active radiation at the stream bottom, however, we were not able to establish an unequivocal relationship between flow‐induced bed movement and GPP.Our results highlight the capacity of primary producers to exploit the discrete and relatively predictable windows of opportunities in high‐mountain streams. We propose that climate‐driven change in snow and glacier melt reduction may ameliorate stream environmental conditions, thereby enhancing the potential autochthonous organic matter supply within the catchment. [ABSTRACT FROM AUTHOR]

Recent advances in high‐frequency environmental sensing and statistical approaches have greatly expanded the breadth of knowledge regarding aquatic ecosystem metabolism—the measurement and interpretation of gross primary productivity (GPP) and ecosystem respiration (ER). Aquatic scientists are poised to take advantage of widely available datasets and freely‐available modeling tools to apply functional information gained through ecosystem metabolism to help inform environmental management. Historically, several logistical and conceptual factors have limited the widespread application of metabolism in management settings. Benefitting from new instrumental and modeling tools, it is now relatively straightforward to extend routine monitoring of dissolved oxygen (DO) to dynamic measures of aquatic ecosystem function (GPP and ER) and key physical processes such as gas exchange with the atmosphere (G). We review the current approaches for using DO data in environmental management with a focus on the United States, but briefly describe management frameworks in Europe and Canada. We highlight new applications of diel DO data and metabolism in regulatory settings and explore how they can be applied to managing and monitoring ecosystems. We then review existing data types and provide a short guide for implementing field measurements and modeling of ecosystem metabolic processes using currently available tools. Finally, we discuss research needed to overcome current conceptual limitations of applying metabolism in management settings. Despite challenges associated with modeling metabolism in rivers and lakes, rapid developments in this field have moved us closer to utilizing real‐time estimates of GPP, ER, and G to improve the assessment and management of environmental change. This article is categorized under:Water and Life > Nature of Freshwater EcosystemsWater and Life > Conservation, Management, and Awareness [ABSTRACT FROM AUTHOR]

Silver nanoparticles (AgNPs) are an emerging class of contaminants with the potential to impact ecosystem structure and function. AgNPs are antimicrobial, suggesting that microbe-driven ecosystem functions may be particularly vulnerable to AgNP exposure. Predicting the environmental impacts of AgNPs requires in situ investigation of environmentally relevant dosing regimens over time scales that allow for ecosystem-level responses. We used 3000 L enclosures installed in a boreal lake to expose plankton communities to chronic and pulse AgNP dosing regimens with concentrations mimicking those recorded in natural waters. We compared temporal patterns of plankton responses, Ag accumulation, and ecosystem metabolism (i.e., daily ecosystem respiration, gross primary production, and net ecosystem production) for 6 weeks of chronic dosing and 3 weeks following a pulsed dose. Ag accumulated in microplankton and zooplankton, but carbon-specific Ag was nonlinear over time and generally did not predict plankton response. Ecosystem metabolism did not respond to either AgNP exposure type. This lack of response corresponded with weak microplankton responses in the chronic treatments but did not reflect the stronger microplankton response in the pulse treatment. Our results suggest that lake ecosystem metabolism is somewhat resistant to environmentally relevant concentrations of AgNPs and that organismal responses do not necessarily predict ecosystem-level responses.

The ecological consequences of biological range extensions reflect the interplay between the functional characteristics of the newly arrived species and their recipient ecosystems. Teasing apart the relative contribution of each component is difficult because most colonization events are studied retrospectively, i.e., after a species became established and its consequences apparent. We conducted a prospective experiment to study the ecosystem consequences of a consumer introduction, using whole-stream metabolism as our integrator of ecosystem activity. In four Trinidadian streams, we extended the range of a native fish, the guppy (Poecilia reticulata), by introducing it over barrier waterfalls that historically excluded it from these upper reaches. To assess the context dependence of these range extensions, we thinned the riparian forest canopy on two of these streams to increase benthic algal biomass and productivity. Guppy's range extension into upper stream reaches significantly impacted stream metabolism but the effects depended upon the specific stream into which they had been introduced. Generally, increases in guppy biomass caused an increase in gross primary production (GPP) and community respiration (CR). The effects guppies had on GPP were similar to those induced by increased light level and were larger in strength than the effects stream stage had on CR. These results, combined with results from prior experiments, contribute to our growing understanding of how consumers impact stream ecosystem function when they expand their range into novel habitats. Further study will reveal whether local adaptation, known to occur rapidly in these guppy populations, modifies the ecological consequences of this species introduction. [ABSTRACT FROM AUTHOR]

Dissolved organic matter (DOM) helps regulate aquatic ecosystem structure and function. In small streams, DOM concentrations are controlled by transport of terrestrial materials to waterways, and are thus highly variable. As rivers become larger, the River Continuum Concept hypothesizes that internal primary production is an increasingly important DOM source, but direct evidence is limited. Recently, the Pulse-Shunt Concept postulated that terrestrial DOM concentrations in larger rivers increase with flow and temperature, which seemingly contradicts previously reported DOM chemostasis in large rivers. This study estimates daily gross primary production (GPP) in 13 streams and rivers across the Connecticut River watershed (watershed areas 0.4–25,019 km2) from 2015 through 2017. Chemostasis of DOM concentrations is maintained by a switch from autochthonous sources of DOM at low flows to terrestrial sources of DOM at high flows in a large temperate river and to a lesser degree in smaller tributaries. At low flow, autochthonous DOM linked to aquatic GPP is the dominant fraction of the DOM pool in large rivers. This autochthonous DOM maintains chemostasis in the main stem and to a lesser extent upstream. Thus, in larger rivers, low-flow autochthonous production stabilizes DOM concentrations during the summer, a critical time for riverine ecology. Consistent with the Pulse-Shunt Concept, terrigenous DOM is the dominant fraction of DOM during higher flow periods and about 70% of annual DOM fluxes to the coast are terrestrial. This pattern of DOM switching is potentially widespread in temperate watersheds with implications to both inland waters and coastal ecosystems. [ABSTRACT FROM AUTHOR]

Climate change alters hydrologic regimes, including their variability. Effects will be pronounced in aquatic ecosystems, where resource subsidies (e.g., nutrients, carbon) drive key ecosystem processes. However, we know little about how changing hydrologic regimes will modulate the spatiotemporal dynamics of lake biogeochemistry and ecosystem metabolism. To address this, we quantified ecosystem metabolism and nutrient dynamicsat high spatial resolution in Acton Lake, a hyper-eutrophic reservoir in the Midwestern US. We captured two consecutive growing seasons with markedly different watershed discharge and nutrient loading. Temporal variability often exceeded spatial variability in both wet and dry years. However, relative spatial variability was higher in the dry year, suggesting that internal processes are more important in structuring spatial dynamics in dry years. Strikingly, marked differences in watershed discharge and nutrient loading between years produced relatively small differences in many lake metrics, suggesting resilience to hydrologic variability. We found little difference in gross primary productivity between wet and dry years, but ecosystem respiration was higher in the wet year, shifting net ecosystem production below zero. Discrete storm events produced strong, yet ephemeral and spatially explicit effects, reflective of the balance of stream input and discharge over the dam. Increases in limiting nutrients were restricted to near stream inlets and returned to pre-storm baseline within days. Ecosystem metabolism was suppressed during storm events, likely due to biomass flushing. Understanding how changing hydrologic regimes will mediate spatiotemporal dynamics of ecosystem metrics is paramount to preserving the ecological integrity and ecosystem services of lakes under future climates. [ABSTRACT FROM AUTHOR]

Resource subsidies affect nutrient cycling, species interactions, and food webs in ways that influence ecosystem structure and function, but their effects depend on the history, magnitude, and recurrence frequency of the subsidies. In aquatic ecosystems, plant detritus has been considered the predominant form of such subsidies; however, while considered less abundant in many ecosystems, carrion represents subsidies with relatively rapid turnover and highly concentrated nutrient and energy release that can have strong and lasting effects on ecosystems. Carrion subsidies can be both autochthonous or allochthonous, and come in the form of natural senescence or disease-related non-consumptive mortality, phenology-based programed death (e.g., salmon spawning and death), or stochastic and episodic events (e.g., mass fish die-offs). All aquatic ecosystems have some level of non-consumptive mortality that provides a background level of carcasses to aquatic ecosystems, while others have a natural history of carrion resource subsidies (e.g., natural salmon-bearing streams), and some have only recently been exposed to phenology-based carrion subsidies (e.g., anthropogenic salmon introductions around the world). Many aquatic ecosystems experience episodic subsidies in the form of unexpected mass mortalities (e.g., eutrophication-, disease-, or climate-related mass die-offs) or have seasonally dependent pulses, like that of marine or lake snow in the form of zooplankton carcasses. The responses of ecosystems to these different histories and frequencies of carrion subsidies have often been independently investigated, with little effort to compare and bridge research boundaries in the broader context of resource subsidies. In this review, we provide a synthesis of how pulsed carrion nutrient and energy subsidies have widespread and lasting impacts on many aquatic ecosystems. We do this with a synthesis of literature from freshwater and marine ecosystems along three themes of how carrion is produced and decomposes: autochthonous and allochthonous necromass; phenology-based mortality; and stochastic and episodic mass mortality subsidies. Studies of charismatic megafauna carrion (e.g., whales) have described significant impacts in deep ocean systems, but much less is understood for other groups of animals. Quantifying the energy, nutrient, and foodweb effects of carrion is needed for more species and among habitats to more fully understand how ubiquitous forms of necromass contribute to aquatic ecosystem structure and function.

Submarine groundwater discharge (SGD) influences near-shore coral reef ecosystems worldwide. SGD biogeochemistry is distinct, typically with higher nutrients, lower pH, cooler temperature and lower salinity than receiving waters. SGD can also be a conduit for anthropogenic nutrients and other pollutants. Using Bayesian structural equation modelling, we investigate pathways and feedbacks by which SGD influences coral reef ecosystem metabolism at two Hawai'i sites with distinct aquifer chemistry. The thermal and biogeochemical environment created by SGD changed net ecosystem production (NEP) and net ecosystem calcification (NEC). NEP showed a nonlinear relationship with SGD-enhanced nutrients: high fluxes of moderately enriched SGD (Wailupe low tide) and low fluxes of highly enriched SGD (Kūpikipiki'ō high tide) increased NEP, but high fluxes of highly enriched SGD (Kūpikipiki'ō low tide) decreased NEP, indicating a shift toward microbial respiration. pH fluctuated with NEP, driving changes in the net growth of calcifiers (NEC). SGD enhances biological feedbacks: changes in SGD from land use and climate change will have consequences for calcification of coral reef communities, and thereby shoreline protection. [ABSTRACT FROM AUTHOR]

Algae and aquatic plants support river food webs through in-situ primary production. However, gross primary production (GPP) and ecosystem respiration (ER) are rarely evaluated in the context of river management or habitat restoration. We estimated daily GPP and ER during 2 growing seasons for 7 reaches in the Kootenai River and 1 reach in the Elk River, spanning 290 river km across British Columbia, Canada, and Montana and Idaho, USA. We characterized responses of GPP and ER to river management, including reaches with unregulated flow, regulated flow, nutrient addition, and habitat restoration. Downstream GPP and ER generally increased after changes in river management, and higher management intensity led to greater increases. GPP and ER followed a seasonal pattern with low initial values in spring, elevated values in mid-summer, and a return to low values in late summer and autumn. Timing and duration of the elevated period for GPP and ER also differed among reaches following changes in river management. Our results suggest that river management affects GPP and ER, likely through reducing turbidity and the frequency and magnitude of extreme flow events, nutrient additions, and enhanced floodplain connectivity, thereby altering the timing and amount of autochthonous carbon available to the food web. [ABSTRACT FROM AUTHOR]

In many regions of the world, populations of large wildlife have been displaced by livestock, and this may change the functioning of aquatic ecosystems owing to significant differences in the quantity and quality of their dung. We developed a model for estimating loading rates of organic matter (dung) by cattle for comparison with estimated rates for hippopotamus in the Mara River, Kenya. We then conducted a replicated mesocosm experiment to measure ecosystem effects of nutrient and carbon inputs associated with dung from livestock (cattle) versus large wildlife (hippopotamus). Our loading model shows that per capita dung input by cattle is lower than for hippos, but total dung inputs by cattle constitute a significant portion of loading from large herbivores owing to the large numbers of cattle on the landscape. Cattle dung transfers higher amounts of limiting nutrients, major ions and dissolved organic carbon to aquatic ecosystems relative to hippo dung, and gross primary production and microbial biomass were higher in cattle dung treatments than in hippo dung treatments. Our results demonstrate that different forms of animal dung may influence aquatic ecosystems in fundamentally different ways when introduced into aquatic ecosystems as a terrestrially derived resource subsidy. [ABSTRACT FROM AUTHOR]

Estimates of coral reef ecosystem calcification (Gnet) and productivity (Pnet) provide insight into coral community health and functionality in response to short- and long-term stressors such as ocean warming and acidification. Here, we investigate spatial variability in calcification and organic production at One Tree Island (OTI) and compare our new observations to sporadic metabolic rates reported over the previous 50 years on the same reef flat. Gnet and Pnet estimates at the nearshore site were 50% and 166% lower than an offshore site with a shift in organic production from net productive to net respiratory. Contrary to expectations, calcification rates in 2017 (145.7 ± 20.2 mmol m-2 d-1) were comparable to the 1970s estimate (125.0 ± 12.5 mmol m-2 d-1) and 400% greater than similar observations in 2014. Our results indicate only weak associations between Gnet and aragonite (Ωar). A local increase in coral cover from 18% in 2014 to 31% in 2017 was the likely driver of increased calcification. A steeper TA–DIC slope in 2017 demonstrates a greater control of calcification on seawater carbonate chemistry than prior years. Overall, these results highlight the importance of site selection and replication when comparing metabolic datasets, and demonstrate major short-term variability in metabolic rates. The predictive capabilities of ecosystem metabolism studies may be constrained by using the available short-term datasets to represent long-term calcification trends.

Coastal ecosystems act as filters of nutrients from land to the open sea. We investigated the role of eelgrass (Zostera marina) metabolism in the coastal filter transforming nitrogen, phosphorus, and organic carbon. Field campaigns following identical methodologies were carried out at two contrasting coastal locations: the mesohaline and nutrient-rich Roskilde Fjord, Denmark, and the mesotrophic brackish Tvärminne archipelago, Finland. Over the 24-h in situ benthic incubations, we measured oxygen concentrations continuously and assessed changes in DOM characteristics and net fluxes of carbon, nitrogen, and phosphorus. Ecosystem metabolism modeled on the basis of the O2 data showed that the systems were either net heterotrophic (Roskilde Fjord; − 1.6 and − 2.4 g O2 m−2 day−1 in eelgrass meadow and bare sand, respectively) or had balanced primary production and respiration (Tvärminne; 0.0 and 0.2 g O2 m−2 day−1). Overall, initial nutrient stoichiometry was a key factor determining benthic–pelagic fluxes of nutrients, which exacerbated the deviations from Redfield ratios of N and P, indicating an efficient use of the limiting nutrient. A net diel uptake of dissolved inorganic N was observed at both locations (− 2.3 μmol l−1 day−1 in Roskilde Fjord and − 0.1 μmol l−1 day−1 in Tvärminne). Despite minor changes in dissolved organic carbon concentrations during the incubations, a marked increase of fluorescent DOM was observed at both locations, suggesting rapid heterotrophic processing of the DOM pool. Our results underline that the biogeochemical role of eelgrass in the coastal filter is not inherent, but strongly dependent on the environmental conditions. [ABSTRACT FROM AUTHOR]

The transport and processing of nutrients and organic matter in streams are important functions that influence the condition of watersheds and downstream ecosystems. In this study, we investigated the effects of streambed sediment removal on biogeochemical cycling in Fawn River, a gravel-bottomed river in Indiana, U.S.A. We measured stream metabolism as well as nitrogen (N) and phosphorus (P) retention in both restored and unrestored reaches of Fawn River to examine how sediment removal affected multiple biogeochemical functions at the reach scale. We also assessed the properties of restored and unrestored streambed sediments to elucidate potential mechanisms driving observed reach-scale differences. We found that sediment removal led to lower rates of primary productivity and ecosystem respiration in the restored reach, likely due to macrophyte removal and potentially due to changes to sediment organic matter quality. We found minimal differences in N and P retention, suggesting that these processes are controlled at larger spatial or temporal scales than were examined in this study. Denitrification enzyme activity was lower in sediments from the restored reach compared to the unrestored reach, suggesting that restoration may have decreased N removal. Our results indicate that most near-term changes in biogeochemical function following restoration could be attributed to macrophyte removal, although effects from sediment removal may emerge over longer timescales. [ABSTRACT FROM AUTHOR]

The carbon cycle in estuarine environments is difficult to quantify because of substantial spatiotemporal heterogeneity in the sources, exchanges, and fates of carbon. We overcame these challenges with a multidecade numerical modeling analysis of seasonal, interannual, and decadal variability in net ecosystem metabolism (NEM) and associated carbon fluxes in Chesapeake Bay. Interannual variability in NEM along the estuarine axis indicated a clear spatial dependency of NEM on riverine discharge, with elevated flows causing increasing upper bay heterotrophy and increasing lower bay autotrophy during wet years. Our 30‐year simulation suggested the Chesapeake Bay is somewhat unique among estuaries in its tendency toward net autotrophy as a consequence of its extremely high nutrient to organic matter input ratio and large size. Budgets of three different carbon pools revealed that the entire Chesapeake Bay is a CO2 source to the atmosphere and organic carbon source to the open shelf, providing quantitative export estimates for interpretation of anthropogenic perturbations to the regional carbon flux. Key Points: A clear spatial dependency of net ecosystem metabolism on river flow was observed in Chesapeake BayThe Chesapeake Bay is unique in its tendency toward net autotrophy due to its extremely high nutrient to organic matter input ratioThis study provides key quantitative export estimates for the interpretation of anthropogenic perturbations to the regional carbon flux [ABSTRACT FROM AUTHOR]

The effects that fishes have on rates of one or more ecosystem processes (hereafter referred to as functional effects) are often invoked as an important reason for imperilled species conservation. However, the degree to which we understand these effects is rarely evaluated for most groups of fishes. We assessed how well the functional effects of freshwater and diadromous fishes, one of the most imperilled groups of animals, are quantified to date. We found that 88% of studies considering the functional effects of imperilled North American fishes were conducted on one family, Salmonidae. Studies of the functional effects of fishes were also concentrated in Pacific drainages of North America, with few studies in hotspots of imperilled fish diversity such as the Southeastern United States, the arid Southwest and central Mexico. Our results demonstrate the vast taxonomic and geographic gaps in our functional understanding of imperilled fishes and highlight the need to broaden this work to justify the argument that they are functionally important in the ecosystems they inhabit. [ABSTRACT FROM AUTHOR]

Ponds are active components of the global carbon cycle processing and emitting carbon dioxide and methane to the atmosphere. These common habitats frequently experience seasonal water table variations resulting in periodically air-exposed sediments. However, the influence of these events on both the system scale carbon balance and in-pond environmental conditions remains poorly studied. We took advantage of an extraordinarily warm and dry summer to quantify the CO2 efflux from air-exposed sediments and water surfaces in desiccating ponds on Öland, Sweden. Simultaneously, we modelled metabolism and measured environmental variables within the ponds. We found that air-exposed sediments had high CO2 effluxes greatly exceeding that from the water surfaces. Sediment water content influenced the temperature and strongly regulated the CO2 efflux gradually approaching zero as water evaporated. Within the desiccating ponds, respiration was generally higher than gross primary production, but was lower compared to the same ponds with higher water table. These findings highlight the role of periodically air-exposed pond sediments as sites of highly active carbon processes. Not only is this important for the system-scale carbon in ponds, but it may also influence the destiny of buried carbon in lakes subject to climate changes. The environmental conditions within desiccating ponds, most notably high water temperatures and poor oxygen conditions, further iterate the dynamics and extreme nature of ponds. [ABSTRACT FROM AUTHOR]

The restoration of lotic ecosystems as currently practiced is constrained by a limited understanding of the emergence of stream ecosystem functions and their linkages to perceived ecosystem services valued by society. An investigation was made into the connections between ecosystem function and hydraulic structure of a stream impacted by gravel mining operations in western New York. Stream ecosystem metabolic parameters were measured using two‐point dissolved oxygen diurnals on multiple reaches of the same stream, and were correlated with geomorphic and hydraulic descriptors of the same reaches. Results showed ecosystem metabolism at the reach scale varied as a function of geomorphic condition, where higher primary production and community respiration (CR) were observed for reaches observed to be unstable vs. those that were stable or restored. The metabolic variance of a stream ecosystem, proposed as a measure of the degree to which a desired ecological functional goal has been achieved post‐restoration, is determined as the rate of change of the ratio of primary production to CR. Shifts in the P/R ratio were evident in reaches post‐restoration, presumably as a result of changes in hydraulic structure, supporting the utility of the ratio by describing a direct link between instream hydraulic conditions and ecosystem function. Research Impact Statement: A new metric is proposed, metabolic variance, for stream restoration practitioners to assess improved ecosystem services, specifically stream metabolism, in post‐restoration activities. [ABSTRACT FROM AUTHOR]

Species invasions are changing aquatic ecosystems worldwide. Submerged aquatic macrophytes control lake ecosystem processes through their direct and indirect interactions with other primary producers, but how these interactions may be altered by macrophyte species invasions in temperate lakes is poorly understood. We addressed whether invasive watermilfoil (IWM) altered standing crops and gross primary production (GPP) of other littoral primary producers (macrophytes, phytoplankton, attached algae, and periphyton) in littoral zones of six Michigan lakes through a paired-plot comparison study of sites with IWM (standardized abundance 7−56%) compared to those with little or no IWM (standardized abundance 0−2%). We found that primary producer standing crops and the GPP of epiphytes, phytoplankton, and benthic periphyton were variable among lakes and not significantly different between paired study plots. Macrophyte standing crops predicted rates of benthic periphyton GPP, and standing crops of all other primary producers across all study plots. Overall, our results suggest that the effects of IWM on other primary producers in littoral zones may be lake-specific, and are likely dependent on the density of IWM, or whether it is functionally similar to other native species that it replaces or co-exists with. Moreover, in lakes where IWM is established but does not dominate macrophyte assemblages, the effects on littoral zone productivity may be minimal. Instead, overall macrophyte biomass is the primary factor controlling the rates of production and biomass of the other littoral zone primary producers, as has long been understood and observed in lake ecosystems.

Long-term and seasonal changes in production and respiration were surveyed in the Valle de Bravo reservoir, Mexico, in a period during which high water-level fluctuations occurred (2006–2015). We assessed the community metabolism through oxygen dynamics in this monomictic water-body affected by strong diurnal winds. The multiple-year data series allowed relationships with some environmental drivers to be identified, revealing that water level-fluctuations strongly influenced gross primary production and respiratory rates. Production and respiration changed mainly vertically, clearly in relation to light availability. Gross primary production ranged from 0.15 to 1.26 gO2 m−2 h−1, respiration rate from −0.13 to −0.83 gO2 m−2 h−1 and net primary production from −0.36 to 0.66 gO2 m−2 h −1 within the production layer, which had a mean depth of 5.9 m during the stratification periods and of 6.8 m during the circulations. The greater depth of the mixing layer allowed the consumption of oxygen below the production layer even during the stratifications, when it averaged 10.1 m. Respiration below the production layer ranged from −0.23 to −1.38 gO2 m−2 h−1. Vertically integrated metabolic rates (per unit area) showed their greatest variations at the intra-annual scale (stratification-circulation). Gross primary production and Secchi depth decreased as the mean water level decreased between stratification periods. VB is a highly productive ecosystem; its gross primary production averaged 3.60 gC m−2 d−1 during the 10 years sampled, a rate similar to that of hypertrophic systems. About 45% of this production, an annual average net carbon production of 599 g C m−2 year−1, was exported to the hypolimnion, but on the average 58% of this net production was recycled through respiration below the production layer. Overall, only 19% of the carbon fixed in VB is buried in the sediments. Total ecosystem respiration rates averaged −6.89 gC m−2 d−1 during 2006–2015, doubling the gross production rates. The reservoir as a whole exhibited a net heterotrophic balance continuously during the decade sampled, which means it has likely been a net carbon source, potentially releasing an average of 3.29 gC m−2 d−1 to the atmosphere. These results are in accordance with recent findings that tropical eutrophic aquatic ecosystems can be stronger carbon sources than would be extrapolated from temperate systems, and can help guide future reassessments on the contribution of tropical lakes and reservoirs to carbon cycles at the global scale. Respiration was positively correlated with temperature both for the stratification periods and among the circulations, suggesting that the contribution of C to the atmosphere may increase as the reservoirs and lakes warm up owing to climate change and as their water level is reduced through intensification of their use as water sources.

Many conceptual syntheses in ecology and evolution are undergirded by either a patch- or continuum-based model. Examples include gradualism and punctuated equilibrium in evolution, and edge effects and the theory of island biogeography in ecology. In this study, we sought to determine how patch- or continuum-based analyses could explain variation in concentrations of stream macronutrients and system metabolism, represented by measures of productivity and respiration rates, at the watershed scale across the Kanawha River Basin, USA. Using Strahler stream order (SSO; continuum) and functional process zone (FPZ; patch) as factors, we produced statistical models for each variable and compared model performance using likelihood ratio tests. Only one nutrient (i.e., PO3-4) responded better to patch-based analysis. Both models were significantly better than a null model for ecosystem respiration; however, neither outperformed the other. Importantly, in most cases, a combination model, including both SSO and FPZ, best described observed variation in the system. Our findings suggest that several patch- and continuum-based processes may simultaneously influence the concentration of macronutrients and system metabolism. Nutrient spiraling along a continuum and the patch mosaic of land cover may both alter macronutrients, for example. Similarly, increases in temperature and discharge associated with increasing SSO, as well as the differences in light availability and channel morphology associated with different FPZs, may influence system metabolism. For these reasons, we recommend a combination of patch- and continuum-based analyses when modeling, analyzing, and interpreting patterns in stream ecosystem parameters. [ABSTRACT FROM AUTHOR]

Accurate determination of air‐water gas exchange fluxes is critically important for calculating ecosystem metabolism rates from dissolved oxygen in shallow aquatic environments. We present a unique data set of the noble gases neon, argon, krypton, and xenon in a salt marsh pond to demonstrate how the dissolved noble gases can be used to quantify gas transfer processes and evaluate gas exchange parameterizations in shallow, near‐shore environments. These noble gases are sensitive to a variety of physical processes, including bubbling. We thus additionally use this data set to demonstrate how dissolved noble gases can be used to assess the contribution of bubbling from the sediments (ebullition) to gas fluxes. We find that while literature gas exchange parameterizations do well in modeling more soluble gases, ebullition must be accounted for in order to correctly calculate fluxes of the lighter noble gases. In particular, for neon and argon, the ebullition flux is larger than the differences in the diffusive gas exchange flux estimated by four different wind speed‐based parameterizations for gas exchange. We present an application of noble gas derived ebullition rates to improve estimates of oxygen metabolic fluxes in this shallow pond environment. Up to 21% of daily net oxygen production by photosynthesis may be lost from the pond via ebullition during some periods of biologically and physically produced supersaturation. Ebullition could be an important flux of oxygen and other gases that is measurable with noble gases in other shallow aquatic environments. Key Points: Concentrations of high solubility noble gases in a salt marsh pond are predicted well by wind speed‐based gas exchange parameterizationsHowever, ebullition must occur to explain concentrations of less soluble noble gases, and we infer ebullition rates from neon observationsIncluding ebullition fluxes increased daily net oxygen production by 1–21%, making it an important oxygen flux in this setting [ABSTRACT FROM AUTHOR]

We compiled and examined 15 years (2002-2016) of high-frequency monitoring data from the National Estuarine Research Reserve System (NERRS) to characterize diel to interannual variability of pH and dissolved oxygen (DO, % saturation) across 16 diverse, shallow-water habitats along the US Atlantic, Gulf of Mexico, Caribbean, and Pacific coasts. We asked whether these systems exhibit a common pH/DO relationship, whether there were detectable interannual trends in temperature, pH, and DO within and across systems, and how pH/DO dynamics would relate to measured levels of nutrients and chlorophyll. Our analyses confirmed that large, metabolically driven, and thus concurrent fluctuations of pH and DO are a unifying feature of nearshore habitats. Moreover, we derived well-constrained relationships that predict (i) monthly mean pH or (ii) mean diel pH fluctuations across systems based on habitat mean salinity and (i) mean DO or (ii) mean diel DO fluctuations. This suggests that common metabolic principles drive diel to seasonal pH/DO variations within as well as across a diversity of estuarine environments. Yearly pH and DO anomalies did not show monotonous trends over the study period and differed considerably between sites and regions. However, weekly anomalies of means, diel minima, and diel ranges of pH and DO changed significantly over time and were strongly correlated to temperature anomalies. These general patterns lend strong empirical support to the notion that coastal acidification—in addition to being driven by eutrophication and atmospheric CO2 increases—is exacerbated simply by warming, likely via increasing community respiration. Nutrient and chlorophyll dynamics were inversely related in these shallow, well-mixed systems, but higher nutrient levels were still associated with lower pH and lower DO levels in most, but not all, systems. Our analyses emphasize the particular dynamics of nearshore habitats and the critical importance of NERRS and its system-wide monitoring program. [ABSTRACT FROM AUTHOR]

Although stream ecosystems are recognized as an important component of the global carbon cycle, the impacts of climate-induced hydrological extremes on carbon fluxes in stream networks remain unclear. Using continuous measurements of ecosystem metabolism, we report on the effects of changes in snowmelt hydrology during the anomalously warm winter 2013/2014 on gross primary production (GPP), ecosystem respiration (ER), and net ecosystem production (NEP) in an Alpine stream network. We estimated ecosystem metabolism across 12 study reaches of the 254 km2 subalpine Ybbs River Network (YRN), Austria, for 18 months. During spring snowmelt, GPP peaked in 10 of our 12 study reaches, which appeared to be driven by PAR and catchment area. In contrast, the winter precipitation shift from snow to rain following the low-snow winter in 2013/2014 increased spring ER in upper elevation catchments, causing spring NEP to shift from autotrophy to heterotrophy. Our findings suggest that the YRN transitioned from a transient sink to a source of carbon dioxide (CO2) in spring as snowmelt hydrology differed following the high-snow versus low-snow winter. This shift toward increased heterotrophy during spring snowmelt following a warm winter has potential consequences for annual ecosystem metabolism, as spring GPP contributed on average 33% to annual GPP fluxes compared to spring ER, which averaged 21% of annual ER fluxes. We propose that Alpine headwaters will emit more within-stream respiratory CO2 to the atmosphere while providing less autochthonous organic energy to downstream ecosystems as the climate gets warmer. [ABSTRACT FROM AUTHOR]

For many floodplain rivers, reinstating wetland connectivity is necessary for ecosystems to recover from decades of regulation. Environmental return flows (the managed delivery of wetland water to an adjacent river) can be used strategically to facilitate natural ecosystem connectivity, enabling the transfer of nutrients, energy, and biota from wetland habitats to the river. Using an informal adaptive management framework, we delivered return flows from a forested wetland complex into a large lowland river in south-eastern Australia. We hypothesized that return flows would (a) increase river nutrient concentrations; (b) reduce wetland nutrient concentrations; (c) increase rates of ecosystem metabolism through the addition of potentially limiting nutrients, causing related increases in the concentration of water column chlorophyll-a; and (d) increase the density and species richness of microinvertebrates in riverine benthic habitats. Our monitoring results demonstrated a small increase in the concentrations of several key nutrients but no evidence for significant ecological responses was found. Although return flows can be delivered from forested floodplain areas without risking hypoxic blackwater events, returning nutrient and carbon-rich water to increase riverine productivity is limited by the achievable scale of return flows. Nevertheless, using return flows to flush carbon from floodplains may be a useful management tool to reduce carbon loads, preparing floodplains for subsequent releases (e.g., mitigating the risk of hypoxic blackwater events). In this example, adaptive management benefited from a semi-formal collaboration between science and management that allowed for prompt decision-making. [ABSTRACT FROM AUTHOR]