10 results on '"Egemen Foto"'
Search Results
2. Biological activity and ADME/Tox prediction of some 2-substituted benzoxazole derivatives
- Author
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Fatma Zilifdar Foto, Egemen Foto, Tugba Ertan-Bolelli, and Ilkay Yildiz
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Benzoxazoles ,Organic Chemistry ,Antineoplastic Agents ,Biochemistry ,Structure-Activity Relationship ,DNA Topoisomerases, Type II ,Cell Line, Tumor ,Drug Discovery ,Humans ,Topoisomerase II Inhibitors ,Drug Screening Assays, Antitumor ,Molecular Biology ,Cell Proliferation ,HeLa Cells - Abstract
In this study, we mainly focused on some in vitro biological activities of a series of (5 or 6)-amino-2- (substituted phenyl and benzyl) benzoxazole derivatives. For this purpose, we tested cytotoxic and genotoxic activities of them on cancer cell lines and their topoisomerase inhibitory activities. We also tested their cytotoxic and genotoxic activities on non-cancerous cells (L929) and their mutagenic activities by Ames test to evaluate their effects on healthy cells. Only TD5 was found cytotoxic on all the tested cancer cell lines and did not exhibit either cytotoxic or genotoxic activities against healthy cells, whereas TD1, TD2, TD3 and TD7 were more cytotoxic against only HeLa cells. Only TD4 was found as mutagenic derivative. None of the compounds had any topoisomerase inhibitory activities nevertheless some of them caused inhibition of topoisomerase II activity. Additionally, we used an in silico model to predict the drug-like properties of them to evaluate their bioavailability to the QikProp Properties Predictions. All the calculated properties were found in a permissible range. According to the data obtained from biological activity studies, it can be concluded that the methylene bridge at the position 2 of benzoxazole ring decreases cytotoxic activity on cancer cells and inhibitory activity on DNA topoisomerases.
- Published
- 2022
- Full Text
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3. Discovery of 5-(or 6)-benzoxazoles and oxazolo[4,5-b]pyridines as novel candidate antitumor agents targeting hTopo IIα
- Author
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Esin Karatas, Tugba Ertan-Bolelli, Sanaz Ataei, Ilkay Yildiz, Egemen Foto, Gozde Yalcin-Ozkat, Fatma Zilifdar, and Serap Yilmaz
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Models, Molecular ,In silico ,Antineoplastic Agents ,01 natural sciences ,Biochemistry ,HeLa ,chemistry.chemical_compound ,Structure-Activity Relationship ,Cell Line, Tumor ,Drug Discovery ,medicine ,Humans ,Topoisomerase II Inhibitors ,Molecular Biology ,IC50 ,Oxazoles ,Etoposide ,ADME ,Cell Proliferation ,Benzoxazoles ,biology ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Topoisomerase ,Organic Chemistry ,Biological activity ,Benzoxazole ,biology.organism_classification ,Combinatorial chemistry ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,DNA Topoisomerases, Type II ,Pyrimidines ,biology.protein ,Drug Screening Assays, Antitumor ,medicine.drug - Abstract
Discovery of novel anticancer drugs which have low toxicity and high activity is very significant area in anticancer drug research and development. One of the important targets for cancer treatment research is topoisomerase enzymes. In order to make a contribution to this field, we have designed and synthesized some 5(or 6)-nitro-2-(substitutedphenyl)benzoxazole (1a-1r) and 2-(substitutedphenyl)oxazolo[4,5-b]pyridine (2a-2i) derivatives as novel candidate antitumor agents targeting human DNA topoisomerase enzymes (hTopo I and hTopo IIα). Biological activity results were found very promising for the future due to two compounds, 5-nitro-2-(4-butylphenyl)benzoxazole (1i) and 2-(4-butylphenyl)oxazolo[4,5-b]pyridine (2i), that inhibited hTopo IIα with 2 µM IC50 value. These two compounds were also found to be more active than reference drug etoposide. However, 1i and 2i did not show any satisfactory cyctotoxic activity on the HeLa, WiDR, A549, and MCF7 cancer cell lines. Moreover, molecular docking and molecular dynamic simulations studies for the most active compounds were applied in order to understand the mechanism of inhibition activity of hTopo IIα. In addition, in silico ADME/Tox studies were performed to predict drug-likeness and pharmacokinetic properties of all the tested compounds.
- Published
- 2020
4. Inhibition of DNA Topoisomerases by a Series of Benzoxazoles and their Possible Metabolites
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Ilkay Yildiz, Egemen Foto, Esin Aki-Yalcin, Fatma Zilifdar, Nuran Diril, and Tugba Ertan-Bolelli
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Series (mathematics) ,biology ,010405 organic chemistry ,Topoisomerase ,Pharmaceutical Science ,01 natural sciences ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,Biochemistry ,chemistry ,Drug Discovery ,biology.protein ,Molecular Medicine ,DNA - Published
- 2018
- Full Text
- View/download PDF
5. Nanoparticles for Sustainable Bioenergy and Biofuel Production
- Author
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Muhammed Aasim, Egemen Foto, and Muhammad Sameeullah
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Engineering ,Biofuel ,business.industry ,Agriculture ,Bioenergy ,Energy resources ,Sustainability ,Production (economics) ,Biochemical engineering ,business - Abstract
Nanotechnology is offering new technological improvements by using nanomaterials in various fields of science over the past three decades because of their distinctive properties in contrast to their bulk form. This technology can provide faster and more reliable methods to optimize energy resources from biological sources. Today, nanotechnology based products are found in daily life in a wide range of areas ranging from industrial measurement and detection devices, treatment systems, and wrinkle-resistant clothing to consumer-friendly products. Researches on nanotechnology are continuing to provide continuous improvement in life conditions by providing innovations in the fields of transportation, energy, agriculture, medicine, computer, and electronics. On the other hand, biofuel based on biological agents like algae, plants, etc. is another field which is gaining popularity and these biofuels are in use commercially. Recent advances in the biotechnology and nanotechnology open new window for researchers to enhance biofuel production. This study highlights the recent advances, contribution, and innovations in the field of nanotechnology to the development of biofuels.
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- 2020
- Full Text
- View/download PDF
6. Benzoxazines as new human topoisomerase I inhibitors and potential poisons
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Ismail Yalcin, Esin Aki-Yalcin, Betul Tekiner-Gulbas, Cigdem Ozen, Nuran Diril, Ilkay Yildiz, Egemen Foto, and Fatma Zilifdar
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Intercalation (chemistry) ,Poison control ,Topoisomerase-I Inhibitor ,01 natural sciences ,Catalysis ,03 medical and health sciences ,chemistry.chemical_compound ,Structure-Activity Relationship ,Medicine ,IC50 ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,DNA ligase ,biology ,010405 organic chemistry ,business.industry ,Topoisomerase ,Building and Construction ,DNA ,0104 chemical sciences ,Benzoxazines ,chemistry ,Biochemistry ,DNA Topoisomerases, Type I ,biology.protein ,Topoisomerase I Inhibitors ,business ,Camptothecin ,Methyl group ,medicine.drug ,Research Article - Abstract
BACKGROUND: The numbers of topoisomerase I targeted drugs on the market are very limited although they are used clinically for treatment of solid tumors. Hence, studies about finding new chemical structures which specifically target topoisomerase I are still remarkable. OBJECTIVES: In this present study, we tested previously synthesized 3,4-dihydro-2H-1,4-benzoxazin-3-one derivatives to reveal their human DNA topoisomerase I inhibitory potentials. METHODS: We investigated inhibitory activities of 3,4-dihydro-2H-1,4-benzoxazin-3-one derivatives on human topoisomerase I by relaxation assay to clarify inhibition mechanisms of effective derivatives with EMSA and T4 DNA ligase based intercalation assay. With SAR study, it was tried to find out effective groups in the ring system. RESULTS: While 10 compounds showed catalytic inhibitory activity, 8 compounds were found to be potential topoisomerase poisons. 4 of them also exhibited both activities. 2-hydroxy-3,4-dihydro-2H-1,4-benzoxazin-3-one (BONC-001) was the most effective catalytic inhibitor (IC(50):8.34 mM) and ethyl 6-chloro-4-methyl-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-acetate (BONC-013) was the strongest potential poison (IC(50):0.0006 mM). BONC-013 was much more poisonous than camptothecin (IC(50):0.034 mM). Intercalation assay showed that BONC-013 was not an intercalator and BONC-001 most probably prevented enzyme-substrate binding in an unknown way. Another important result of this study was that OH group instead of ethoxycarbonylmethyl group at R position of benzoxazine ring was important for hTopo I catalytic inhibition while the attachment of a methyl group of R1 position at R(2) position were play a role for increasing of its poisonous effect. CONCLUSION: As a result, we presented new DNA topoisomerase I inhibitors which might serve novel constructs for future anticancer agent designs. [Figure: see text]
- Published
- 2019
7. Qualitative and Quantitative Evaluation of Cytotoxicity of Five Different One-Step Self-Etching Adhesives
- Author
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Zehra, Süsgün Yıldırım, Şeyhmus, Bakır, Elif, Bakır, and Egemen, Foto
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Dental Cements ,Haplorhini ,Rats ,Resin Cements ,Acid Etching, Dental ,Polymethacrylic Acids ,Evaluation Studies as Topic ,Materials Testing ,Toxicity Tests ,Animals ,Methacrylates ,Bisphenol A-Glycidyl Methacrylate ,Cells, Cultured ,Qualitative Research - Abstract
To qualitatively and quantitatively compare the cytotoxic potentials of five different one-step self-etching adhesives: PrimeBond One-Select (PB-OS), Optibond All-in-One (OB-AIO), G-Bond (GB), Clearfil Universal Bond (CUB), Single Bond Universal (SBU).During the first stage of the study, the cytotoxic activities of the test materials were evaluated qualitatively using the direct contact method. In this method, the test materials were placed directly into a monkey kidney epithelial cell culture medium. Reaction zones which occurred in the culture medium were evaluated, in addition to the density and changes in the morphology of the cells. During the second stage, the cytotoxic potential of four different dilutions (1%, 0.1%, 0.01%, 0.001%) of the test materials on L929 rat fibroblast cells was quantitatively evaluated at three different time periods (24 h, 48 h, 72 h) with the MTT tetrazolium-based assay.In the first stage, a zone exceeding 1 cm was observed around or below SBU, CUB, GB and OB-AIO. In PB-OS, the zone borders were approximately 1 cm. In the second stage after the MTT assay, CUB was the most cytotoxic after 24 h, GB and SBU after 48 h, and OB-AIO after 72 h.All adhesives tested showed different degrees of cytotoxicity, which statistically significantly increased with dose. Changes were seen related to time.
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- 2018
8. Biological evaluation and pharmacophore modeling of some benzoxazoles and their possible metabolites
- Author
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Ismail Yalcin, Fatma Zilifdar, Egemen Foto, Esin Aki-Yalcin, Tugba Ertan-Bolelli, and Nuran Diril
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0301 basic medicine ,Models, Molecular ,Pharmaceutical Science ,Antineoplastic Agents ,01 natural sciences ,HeLa ,03 medical and health sciences ,chemistry.chemical_compound ,Structure-Activity Relationship ,Drug Discovery ,medicine ,Cytotoxic T cell ,Humans ,Cells, Cultured ,Cell Proliferation ,Benzoxazoles ,biology ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Benzoxazole ,biology.organism_classification ,In vitro ,0104 chemical sciences ,Comet assay ,030104 developmental biology ,Biochemistry ,Cell culture ,Pharmacophore ,Drug Screening Assays, Antitumor ,Camptothecin ,medicine.drug ,HeLa Cells - Abstract
A series of benzoxazole derivatives and some possible primary metabolites were evaluated as anticancer agents. In vitro anti-proliferative activities of the compounds were tested using the SRB assay on cancerous (HeLa) and non-cancerous (L929) cell lines. It was found that 17 of 21 tested compounds had cytotoxic activity on HeLa cells and the cytotoxic activities of the compounds were 15-700 times higher than on L929 cells. We generated two distinct pharmacophore models for the cytotoxic activities of the compounds on HeLa and L929 cells. While active compounds such as camptothecin and X8 fitted the two models generated for both cell lines, selective cytotoxic compounds such as XT3B fitted only the model generated for HeLa cells. Evaluation of the genotoxic activities of the cytotoxic compounds with the alkaline comet assay revealed that compounds X17 and XT3 showed strong genotoxic effects against HeLa cells at low concentrations whereas they had no genotoxic effect on L929 cells. Due to the selective ability for inducing DNA strand breaks only on cancerous cells, the compounds were identified as effective derivatives for anticancer candidates.
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- 2017
9. Vibrational spectroscopic analysis, molecular dynamics simulations and molecular docking study of 5-nitro-2-phenoxymethyl benzimidazole
- Author
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Sanja J. Armaković, C. Yohannan Panicker, Vidya V. Menon, Gozde Yalcin, C. Van Alsenoy, Esin Karatas, Ilkay Yildiz, Egemen Foto, Stevan Armaković, and Y. Sheena Mary
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010405 organic chemistry ,Chemistry ,Chemical shift ,Organic Chemistry ,Hyperpolarizability ,010402 general chemistry ,01 natural sciences ,Bond-dissociation energy ,0104 chemical sciences ,Analytical Chemistry ,Inorganic Chemistry ,Delocalized electron ,Molecular dynamics ,Docking (molecular) ,Computational chemistry ,Molecule ,HOMO/LUMO ,Spectroscopy - Abstract
FT-IR and FT-Raman spectra of 5-nitro-2-phenoxymethylbenzimidazole were recorded and analyzed theoretically and experimentally. The splitting of N-H stretching mode in the IR spectrum with a red shift from the calculated value indicates the weakening of the NH bond. The theoretical calculations give the phenyl ring breathing modes at 999 cm(-1) for mono substituted benzene ring and at 1040 cm(-1) for tri-substituted benzene ring. The theoretical NMR chemical shifts are in agreement with the experimental chemical shifts. The most reactive sites for electrophilic and nucleophilic attack are predicted from the MEP analysis. HOMO of pi nature is delocalized over the entire molecule whereas the LUMO is located over the complete molecule except mono-substituted phenyl ring and oxygen atom. Reactive sites of the title molecule have been located with the help of ALIE surfaces and Fukui functions. In order to determine locations prone to autoxidation and locations interesting for starting of degradation, bond dissociation energies have been calculated for all single acyclic bonds. For the determination of atoms with pronounced interactions with water we have calculated radial distribution functions obtained after molecular dynamics simulations. The calculated first hyperpolarizability of the title compound is 58.03 times that of standard nonlinear optical material urea. The substrate binding site interactions of the title compound with Topo II enzyme is reported by using molecular docking study. Biological activity studies show that the title compound can be leaded for developing new anticancer agents. (C) 2016 Elsevier B.V. All rights reserved.
- Published
- 2017
10. Genotoxic Potentials And Eukaryotic Dna Topoisomerase I Inhibitory Effects Of Some Benzoxazine Derivatives
- Author
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Ismail Yalcin, Serap Yilmaz, Nuran Diril, Sabiha Alper-Hayta, Esin Aki, Fatma Zilifdar, Ilkay Yildiz, Egemen Foto, Zeliha Aydoğan, and Çiğdem Kaplan-Özen
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chemistry.chemical_classification ,biology ,Cell growth ,Topoisomerase ,Organic Chemistry ,Eukaryotic DNA replication ,Topoisomerase-I Inhibitor ,medicine.disease_cause ,Molecular biology ,Enzyme ,chemistry ,Apoptosis ,biology.protein ,medicine ,General Pharmacology, Toxicology and Pharmaceutics ,Genotoxicity ,Camptothecin ,medicine.drug - Abstract
Benzoxazines are heterocyclic compounds which have been used as intermediates in the synthesis of many heterocyclic structures of biological importance as it has been reported that some of the benzoxazines were effective in promoting apoptosis and inhibiting cell proliferation. Present study contains experimental data that showed genotoxic potentials and inhibitory effects on eukaryotic DNA topoisomerase I of 16 newly synthesized benzoxazine derivatives. By rec assay, the bacterial genotoxicity assay, only four tested compounds were found genotoxic at different concentrations and four compounds showed reverse effect. RC50 values evaluated by rec assay revealed that BS5 was the most genotoxic and BS4 was the most cytotoxic compound at micromolar concentration. Compounds were also tested for their inhibitory effects on eukaryotic DNA topoisomerase I enzyme and it was found that 14 of the compounds had inhibitory effects on eukaryotic DNA topoisomerase I enzyme. The most active compounds, BS18 and BS4, showed higher inhibitory activities than the positive control drug camptothecin which is a well-known commercial topoisomerase I inhibitor.
- Published
- 2014
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