133 results on '"Elhassan, Ibrahim"'
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2. The Rural-Urban Divide: Insights from Immuno-Genetic Profiles and Implications for Health
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Salah, Reem, primary, Aboswar, Safa A.E, additional, Saeed, Azza, additional, Hussein, Ayman A, additional, Elhassan, Ibrahim M, additional, Rockett, Kirk A, additional, Kwiatkowski, Dominic P, additional, Ibrahim, Muntaser, additional, and Elhassan, Ahmed M, additional
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- 2024
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3. The rural urban divide, insights from immuno-genetic profiles and implications for health
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Hamad, Reem, primary, Eid, Nahid A, additional, Aboswar, Safa A.E, additional, Saeed, Azza, additional, Hussein, Ayman A, additional, Elhassan, Ibrahim M, additional, Rockett, Kirk A, additional, Kwiatkowski, Dominic P, additional, Ibrahim, Muntaser E, additional, and Elhassan, Ahmed M, additional
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- 2023
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4. Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study
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Abathina, Amadou, Abubakar, Ismaela, Achidi, Eric, Agbenyega, Tsiri, Aiyegbo, Mohammed, Akoto, Alex, Allen, Angela, Allen, Stephen, Amenga-Etego, Lucas, Amodu, Folakemi, Amodu, Olukemi, Anchang-Kimbi, Judith, Ansah, Nana, Ansah, Patrick, Ansong, Daniel, Antwi, Sampson, Anyorigiya, Thomas, Apinjoh, Tobias, Asafo-Agyei, Emmanuel, Asoala, Victor, Atuguba, Frank, Auburn, Sarah, Bah, Abdou, Bamba, Kariatou, Bancone, Germana, Band, Gavin, Barnwell, David, Barry, Abdoulaye, Bauni, Evasius, Besingi, Richard, Bojang, Kalifa, Bougouma, Edith, Bull, Susan, Busby, George, Camara, Abdoulie, Camara, Landing, Campino, Susana, Carter, Richard, Carucci, Dan, Casals-Pascual, Climent, Ceesay, Ndey, Ceesay, Pa, Chau, Tran, Chuong, Ly, Clark, Taane, Clarke, Geraldine, Cole-Ceesay, Ramou, Conway, David, Cook, Katharine, Cook, Olivia, Cornelius, Victoria, Corran, Patrick, Correa, Simon, Cox, Sharon, Craik, Rachel, Danso, Bakary, Davis, Timothy, Day, Nicholas, Deloukas, Panos, Dembele, Awa, deVries, Jantina, Dewasurendra, Rajika, Diakite, Mahamadou, Diarra, Elizabeth, Dibba, Yaya, Diss, Andrea, Djimdé, Abdoulaye, Dolo, Amagana, Doumbo, Ogobara, Doyle, Alan, Drakeley, Chris, Drury, Eleanor, Duffy, Patrick, Dunstan, Sarah, Ebonyi, Augustine, Elhassan, Ahmed, Elhassan, Ibrahim, Elzein, Abier, Enimil, Anthony, Esangbedo, Pamela, Evans, Jennifer, Evans, Julie, Farrar, Jeremy, Fernando, Deepika, Fitzpatrick, Kathryn, Fullah, Janet, Garcia, Jacob, Ghansah, Anita, Gottleib, Michael, Green, Angie, Hart, Lee, Hennsman, Meike, Hien, Tran, Hieu, Nguyen, Hilton, Eliza, Hodgson, Abraham, Horstmann, Rolf, Hubbart, Christina, Hughes, Catherine, Hussein, Ayman, Hutton, Robert, Ibrahim, Muntaser, Ishengoma, Deus, Jaiteh, Jula, Jallow, Mariatou, Jallow, Muminatou, Jammeh, Kebba, Jasseh, Momodou, Jeffreys, Anna, Jobarteh, Amie, Johnson, Kimberly, Joseph, Sarah, Jyothi, Dushyanth, Kachala, David, Kamuya, Dorcas, Kanyi, Haddy, Karunajeewa, Harin, Karunaweera, Nadira, Keita, Momodou, Kerasidou, Angeliki, Khan, Aja, Kivinen, Katja, Kokwaro, Gilbert, Konate, Amadou, Konate, Salimata, Koram, Kwadwo, Kwiatkowski, Dominic, Laman, Moses, Le, Si, Leffler, Ellen, Lemnge, Martha, Lin, Enmoore, Ly, Alioune, Macharia, Alexander, MacInnis, Bronwyn, Mai, Nguyen, Makani, Julie, Malangone, Cinzia, Mangano, Valentina, Manjurano, Alphaxard, Manneh, Lamin, Manning, Laurens, Manske, Magnus, Marsh, Kevin, Marsh, Vicki, Maslen, Gareth, Maxwell, Caroline, Mbunwe, Eric, McCreight, Marilyn, Mead, Daniel, Mendy, Alieu, Mendy, Anthony, Mensah, Nathan, Michon, Pascal, Miles, Alistair, Miotto, Olivo, Modiano, David, Mohamed, Hiba, Molloy, Sile, Molyneux, Malcolm, Molyneux, Sassy, Moore, Mike, Moyes, Catherine, Mtei, Frank, Mtove, George, Mueller, Ivo, Mugri, Regina, Munthali, Annie, Mutabingwa, Theonest, Nadjm, Behzad, Ndi, Andre, Ndila, Carolyne, Newton, Charles, Niangaly, Amadou, Njie, Haddy, Njie, Jalimory, Njie, Madi, Njie, Malick, Njie, Sophie, Njiragoma, Labes, Nkrumah, Francis, Ntunthama, Neema, Nyika, Aceme, Nyirongo, Vysaul, O'Brien, John, Obu, Herbert, Oduro, Abraham, Ofori, Alex, Olaniyan, Subulade, Olaosebikan, Rasaq, Oluoch, Tom, Omotade, Olayemi, Oni, Olajumoke, Onykwelu, Emmanuel, Opi, Daniel, Orimadegun, Adebola, O'Riordan, Sean, Ouedraogo, Issa, Oyola, Samuel, Parker, Michael, Pearson, Richard, Pensulo, Paul, Peshu, Norbert, Phiri, Ajib, Phu, Nguyen, Pinder, Margaret, Pirinen, Matti, Plowe, Chris, Potter, Claire, Poudiougou, Belco, Puijalon, Odile, Quyen, Nguyen, Ragoussis, Ioannis, Ragoussis, Jiannis, Rasheed, Oba, Reeder, John, Reyburn, Hugh, Riley, Eleanor, Risley, Paul, Rockett, Kirk, Rodford, Joanne, Rogers, Jane, Rogers, William, Rowlands, Kate, Ruano-Rubio, Valentín, Sabally-Ceesay, Kumba, Sadiq, Abubacar, Saidy-Khan, Momodou, Saine, Horeja, Sakuntabhai, Anavaj, Sall, Abdourahmane, Sambian, David, Sambou, Idrissa, SanJoaquin, Miguel, Sepúlveda, Nuno, Shah, Shivang, Shelton, Jennifer, Siba, Peter, Silva, Nilupa, Simmons, Cameron, Simpore, Jaques, Singhasivanon, Pratap, Sinh, Dinh, Sirima, Sodiomon, Sirugo, Giorgio, Sisay-Joof, Fatoumatta, Sissoko, Sibiry, Small, Kerrin, Somaskantharajah, Elilan, Spencer, Chris, Stalker, Jim, Stevens, Marryat, Suriyaphol, Prapat, Sylverken, Justice, Taal, Bintou, Tall, Adama, Taylor, Terrie, Teo, Yik, Thai, Cao, Thera, Mahamadou, Titanji, Vincent, Toure, Ousmane, Troye-Blomberg, Marita, Usen, Stanley, Uyoga, Sophie, Vanderwal, Aaron, Wangai, Hannah, Watson, Renee, Williams, Thomas, Wilson, Michael, Wrigley, Rebecca, Yafi, Clarisse, Yamoah, Lawrence, Ndila, Carolyne M, Macharia, Alexander W, Nyutu, Gideon, Ojal, John, Shebe, Mohammed, Awuondo, Kennedy O, Mturi, Neema, Tsofa, Benjamin, Clark, Taane G, Kariuki, Silvia, Mackinnon, Margaret, Maitland, Kathryn, Kwiatkowski, Dominic P, Rockett, Kirk A, and Williams, Thomas N
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- 2018
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5. Elhassan, Ibrahim Mohamed
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Elhassan, Ibrahim Mohamed and Elhassan, Ibrahim Mohamed
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- 2023
6. Automating Elicitation Technique Selection using Machine Learning
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Iqrar Ahmad, Rizwan khan, Mohammed Burhanur Rehman, Hatim M. Elhassan Ibrahim Dafallaa, and Nazir Ahmad
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Computer science ,business.industry ,Requirements elicitation ,Artificial intelligence ,Machine learning ,computer.software_genre ,business ,computer ,Elicitation technique ,Selection (genetic algorithm) - Published
- 2020
7. In vivo Switching between Variant Surface Antigens in Human Plasmodium falciparum Infection
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Staalsoe, Trine, Hamad, Amel A., Hviid, Lars, Elhassan, Ibrahim M., Arnot, David E., and Theander, Thor G.
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- 2002
8. Use of Artificial Intelligence in Healthcare Systems: State-of-the-Art Survey
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null Komal, Ganesh Kumar Sethi, Nazir Ahmad, Mohammed Burhanur Rehman, Hatim M. Elhassan Ibrahim Dafallaa, and Mamoon Rashid
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Medical services ,Ethical issues ,Scope (project management) ,Point (typography) ,business.industry ,Computer science ,Health care ,Artificial intelligence ,State (computer science) ,business ,Field (computer science) ,Healthcare system - Abstract
Artificial Intelligence (AI) techniques getting at any point present in modern business and regular day to day existence is additionally consistently being applied to Healthcare. In various pieces of regulatory cycles and patient thoughts by making use of Artificial Intelligence in Healthcare services can possibly help Healthcare services suppliers. Most of the AI and medical services innovations have solid importance to the Healthcare field, yet the strategies they backing can shift essentially and keeping in mind that a few review papers on Artificial Intelligence in Healthcare recommend that by making use of Artificial Intelligence in Healthcare can perform similarly too or better than people at specific techniques, like diagnosing disease, it will be a significant number of years before AI in Healthcare services replaces people for an expansive scope of medical tasks. By using Artificial Intelligence it is expecting to mirror human mental capacities and limits. It is acquiring a change point of view to constrain by extending accessibility of Healthcare, services information, and quick progression of investigation methods. Significant illness areas by making use of AI techniques incorporate cardiology, Cancer, neurology, and then we review the applications, Ethical issues in the application of AI to Healthcare and conclude about the different AI frameworks.
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- 2021
9. Requirement elicitation: Requirements conflict resolution and communication model for Telecommunication Sector
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Iqrar Ahmad, Nazir Ahmad, Rizwan khan, Mohammed Burhanur Rehman, Mamoon Rashid, and Hatim M. Elhassan Ibrahim Dafallaa
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Computer science ,business.industry ,media_common.quotation_subject ,Mechanism based ,Requirements elicitation ,Resolution (logic) ,Phase (combat) ,Standard deviation ,Models of communication ,Conflict resolution ,Function (engineering) ,Telecommunications ,business ,media_common - Abstract
Requirements elicitation (RE) phase is very critical and crucial to the success of IS projects in telecommunication sector. Unfortunately, this phase of IS projects development is susceptible to a large degree of errors, affected by key factors embedded in the applied communication techniques, which results in a requirement conflicts that widen the gap of what is being build and what is being desired by the stakeholders. The aim of this paper is to present a Requirements conflict resolution and communication model to address the lack of a systematic mechanism to quantify the communication obstacles and to classify the requirements conflicts in the RE phase. The proposed model will introduce the conflict detection and resolution mechanism based on the normalized cross correlations function (NCCF), standard deviation (SD) and the standard error (SE) functions to detect and quantify the conflicted requirements based on the calculation of the requirements correlations and accuracy. The proposed model will overcome the reoccurring issues of the requirement elicitation phase.
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- 2021
10. Optimal Coordination of Overcurrent Relay Protection Case Study Sawakin Substation
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Fatima M. Abufatima Ahmed, Tareg Nabel Mahmoud, Mugahid M. Elhassan Ibrahim, Ezedin Osman Salih, and Mahmoud Izzelden Abdalzeem
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Computer science ,business.industry ,Electrical engineering ,Overcurrent relay ,business - Published
- 2020
11. On copper removal from aquatic media using simultaneous and sequential iron-perlite composites
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Mouhammad Shadi Khudr, Arthur Garforth, Yassin Mohamed Elhassan Ibrahim, and Abdullatif Alfutimie
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bepress|Engineering ,Infrared spectroscopy ,chemistry.chemical_element ,02 engineering and technology ,engrXiv|Engineering|Chemical Engineering ,010501 environmental sciences ,01 natural sciences ,Metal ,Adsorption ,020401 chemical engineering ,0204 chemical engineering ,Fourier transform infrared spectroscopy ,Safety, Risk, Reliability and Quality ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Pollutant ,Inert ,Chemistry ,bepress|Engineering|Chemical Engineering|Other Chemical Engineering ,Process Chemistry and Technology ,bepress|Engineering|Chemical Engineering ,Copper ,engrXiv|Engineering ,visual_art ,Perlite ,visual_art.visual_art_medium ,engrXiv|Engineering|Chemical Engineering|Other Chemical Engineering ,Biotechnology ,Nuclear chemistry - Abstract
The use of reusable, affordable, and inert adsorbents as a means to mitigate copper pollution, with a lesser burden on the environment, has been attracting some attention. However, aiding the adsorption process of a promising adsorbent, such as expanded volcanic glass (perlite), with a reducing companion, such as solid iron, that can displace and dispose of copper from polluted water has never been tested before. In this laboratory study, we investigated the removal of Cu2+, resulting from contaminating freshwater with copper sulphate pentahydrate, using simultaneous or non-simultaneous (sequential) mixes of expanded perlite and iron coarse powder over 23 hours. The percentage of copper removed was calculated at 15 min, 40 min, 120 min, 300 min, and 1380 min using induced coupled plasma (ICP-OES). A rapid removal of 71% at 120 min was achieved when the perlite and iron were added simultaneously in separate permeable pouches; the application of the iron after the perlite led to 78% of removal at 1380 min that was almost identical to what was accrued via perlite alone (77%). This, therefore, suggests that the presence of iron is most advantageous in the short run as it leads to fast uptake of Cu2+, attributable to the combined action of the reduction of Cu2+ by iron and Cu2+ adsorption by perlite. Further investigation in support of the results was carried out using Energy-Dispersive X-Ray Spectroscopy (EDAX), X-Ray Diffraction (XRD), Brunauer, Emmett and Teller (BET), and Fourier-Transform Infrared Spectroscopy (FTIR). The findings of this multidisciplinary work provide insights and mechanisms for heavy metal removal from water in a relatively short time using a novel time-specific combination of iron and perlite and thus merit wider testing across different classes of adsorbents, pollutants, and water systems.
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- 2020
12. Implementing and Automating Elicitation Technique Selection using Machine Learning
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Iqrar Ahmad, Mohammed Burhanur Rehman, Hatim M. Elhassan Ibrahim, Nazir Ahmad, and Rizwan khan
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business.industry ,Process (engineering) ,Computer science ,02 engineering and technology ,Requirements elicitation ,Machine learning ,computer.software_genre ,Elicitation technique ,020204 information systems ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Artificial intelligence ,business ,computer ,Selection (genetic algorithm) - Abstract
Technique selection is one of the frequent issues in the requirement elicitation process; this issue has a major impact on the final requirement report output. The inappropriate selection of the techniques could lead to improper requirements and thus increase the risk of failure for the intended project. This paper addresses the technique selection issue encountered during the requirements elicitation stage, through a proposed a machine learning model to transfer the experts’ knowledge of elicitation technique selection of the less experienced. Based on the system analysts, stakeholders and technique properties as such systems and automate the technique selection process to provide the best optimization technique nomination, for the elicitation case complexity characteristics.
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- 2019
13. Novel Image Processing Technique for Feature Detection of Wheat Crops using Python OpenCV
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Balwant Ram, Mamoon Rashid, Nazir Ahmad, Mohammed Burhanur Rehman, Ranbir Singh Batth, and Hatim M. Elhassan Ibrahim Dafallaa
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Computer science ,business.industry ,Feature extraction ,Image processing ,02 engineering and technology ,Filter (signal processing) ,Python (programming language) ,Edge detection ,GrabCut ,020204 information systems ,0202 electrical engineering, electronic engineering, information engineering ,Canny edge detector ,020201 artificial intelligence & image processing ,Computer vision ,Artificial intelligence ,business ,computer ,computer.programming_language - Abstract
The job of this research is to filter the diseased part of the leaf from the leaf images. The authors proposed and implemented image processing technique using OpenCV for separating the diseased part of the leaf from the image of the leaf. Foreground Extraction, Edge Detection, Color filtering and Combination of Edge Detection with Color Filtering is done for wheat images.This novel technique can facilitate the process of the detection of diseases in wheat plants. The system allows to follow a particular pattern of capturing images of plants so that threats will be analysed quickly. Apart from helping humans to detect the diseases in plants, this research work can automate the process of detection without the need of human resources for feeding dataset to model, which is a much reliable process. This research will ultimately contribute in automation of agriculture processes faster and will make farmers to cultivate more in less amount of time.
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- 2019
14. Comparison Between Adomain Decomposition Method and Numerical Solutions of Linear Volterra Integral Equations of the Second Kind by Using the Fifth Order of Non-Polynomial Spline Functions
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Abdalla Elhassan Ibrahim, Elgaili, primary, Radi Abdel Rahman Abdel Gadir Abdel Rahman, Abdel, additional, Yahia Mohammed, Neama, additional, and Abdallah Hamed Haroun, Nageeb, additional
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- 2021
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15. Requirement elicitation: Requirements conflict resolution and communication model for Telecommunication Sector
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Rehman, Mohammed, primary, Elhassan Ibrahim Dafallaa, Hatim, additional, Ahmad, Nazir, additional, Ahmad, Iqrar, additional, Rashid, Mamoon, additional, and Khan, Rizwan, additional
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- 2021
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16. Automating Elicitation Technique Selection using Machine Learning
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Elhassan Ibrahim Dafallaa, Hatim M., primary, Ahmad, Nazir, additional, Rehman, Mohammed Burhanur, additional, Ahmad, Iqrar, additional, and khan, Rizwan, additional
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- 2020
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17. Variation of antibody responses to Plasmodium falciparum MSP1-19 antigen with parasitaemia and IL4vntr polymorphism in Khartoum state, Sudan
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Abushama, Hind M., primary, AbdelRahman, Inas A., additional, Ali, Hiba, additional, Mowia, Tasneem, additional, Mousa, Faisal, additional, Abdelhamid, Muzamil M., additional, and ElHassan, Ibrahim M., additional
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- 2020
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18. Novel Image Processing Technique for Feature Detection of Wheat Crops using Python OpenCV
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Rashid, Mamoon, primary, Ram, Balwant, additional, Batth, Ranbir Singh, additional, Ahmad, Nazir, additional, Elhassan Ibrahim Dafallaa, Hatim M., additional, and Burhanur Rehman, Mohammed, additional
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- 2019
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19. The role of immunoglobulin E antibodies in protection against Plasmodium falciparum
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Mohamed, Reem K., Ibrahim, Muntaser E., and Elhassan, Ibrahim M.
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- 2009
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20. 77 The role of IgE antibodies in protection against Plasmodium falciparum
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Mohammed, Reem, Bloomberg, Marita Troye, Eltayeb, Muntasir, and Elhassan, Ibrahim
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- 2008
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21. The Outcome of Children With Acute Myeloid Leukemia (AML) Post-Allogeneic Stem Cell Transplantation (SCT) Is Not Improved by the Addition of Etoposide to the Conditioning Regimen
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Ayas, Mouhab, Al-Seraihi, Amal, Al-Mahr, Mohamad, Al-Jefri, Abdullah, Belgaumi, Assim, Elhassan, Ibrahim, and El-Solh, Hassan
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- 2006
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22. Comparison Between Adomain Decomposition Method and Numerical Solutions of Linear Volterra Integral Equations of the Second Kind by Using the Fifth Order of Non-Polynomial Spline Functions
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Elgaili Abdalla Elhassan Ibrahim, Neama Yahia Mohammed, Nageeb Abdallah Hamed Haroun, and Abdel Radi Abdel Rahman Abdel Gadir Abdel Rahman
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MathematicsofComputing_NUMERICALANALYSIS ,Function (mathematics) ,Volterra integral equation ,Polynomial basis ,symbols.namesake ,Spline (mathematics) ,symbols ,Piecewise ,Applied mathematics ,Decomposition method (constraint satisfaction) ,Trigonometry ,MATLAB ,computer ,computer.programming_language - Abstract
Volterra integral equations are a special type of integrative equations; they are divided into two categories referred to as the first and second type. This paper will deal with the second type which has wide range of the applications in physics and engineering problems. Spline functions are piece-wise polynomials of degree n joined together at the break points with n-1 continuous derivatives. The break points of splines are called Knot, spline function can be integrated and differentiated due to being piece wise polynomials and can easily store and implemented on digital computer, non-polynomial spline function apiece wise is a blend of trigonometric, as well as, polynomial basis function, which form a complete extended Chebyshev space. Matlab is a powerful computing system for handling the calculations involved scientific and engineering problems. The aim of this paper is to compare between Adomain decomposition method and numerical solution to solve Volterra Integral Equations of second kind using the fifth order non-polynomial Spline functions by Matlab. We followed the applied mathematical method numerically by Matlab. Numerical examples are presented to illustrate the applications of this methods and to compare the computed results with analytical solutions. Finally by comparison of numerical results, Simplicity and efficiency of this method be shown.
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- 2021
23. Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study
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Ndila, Carolyne M, Uyoga, Sophie, Macharia, Alexander W, Nyutu, Gideon, Peshu, Norbert, Ojal, John, Shebe, Mohammed, Awuondo, Kennedy O, Mturi, Neema, Tsofa, Benjamin, Sepúlveda, Nuno, Clark, Taane G, Band, Gavin, Clarke, Geraldine, Rowlands, Kate, Hubbart, Christina, Jeffreys, Anna, Kariuki, Silvia, Marsh, Kevin, Mackinnon, Margaret, Maitland, Kathryn, Kwiatkowski, Dominic P, Rockett, Kirk A, Williams, Thomas N, Abathina, Amadou, Abubakar, Ismaela, Achidi, Eric, Agbenyega, Tsiri, Aiyegbo, Mohammed, Akoto, Alex, Allen, Angela, Allen, Stephen, Amenga-Etego, Lucas, Amodu, Folakemi, Amodu, Olukemi, Anchang-Kimbi, Judith, Ansah, Nana, Ansah, Patrick, Ansong, Daniel, Antwi, Sampson, Anyorigiya, Thomas, Apinjoh, Tobias, Asafo-Agyei, Emmanuel, Asoala, Victor, Atuguba, Frank, Auburn, Sarah, Bah, Abdou, Bamba, Kariatou, Bancone, Germana, Barnwell, David, Barry, Abdoulaye, Bauni, Evasius, Besingi, Richard, Bojang, Kalifa, Bougouma, Edith, Bull, Susan, Busby, George, Camara, Abdoulie, Camara, Landing, Campino, Susana, Carter, Richard, Carucci, Dan, Casals-Pascual, Climent, Ceesay, Ndey, Ceesay, Pa, Chau, Tran, Chuong, Ly, Clark, Taane, Cole-Ceesay, Ramou, Conway, David, Cook, Katharine, Cook, Olivia, Cornelius, Victoria, Corran, Patrick, Correa, Simon, Cox, Sharon, Craik, Rachel, Danso, Bakary, Davis, Timothy, Day, Nicholas, Deloukas, Panos, Dembele, Awa, Devries, Jantina, Dewasurendra, Rajika, Diakite, Mahamadou, Diarra, Elizabeth, Dibba, Yaya, Diss, Andrea, Djimdé, Abdoulaye, Dolo, Amagana, Doumbo, Ogobara, Doyle, Alan, Drakeley, Chris, Drury, Eleanor, Duffy, Patrick, Dunstan, Sarah, Ebonyi, Augustine, Elhassan, Ahmed, Elhassan, Ibrahim, Elzein, Abier, Enimil, Anthony, Esangbedo, Pamela, Evans, Jennifer, Evans, Julie, Farrar, Jeremy, Fernando, Deepika, Fitzpatrick, Kathryn, Fullah, Janet, Garcia, Jacob, Ghansah, Anita, Gottleib, Michael, Green, Angie, Hart, Lee, Hennsman, Meike, Hien, Tran, Hieu, Nguyen, Hilton, Eliza, Hodgson, Abraham, Horstmann, Rolf, Hughes, Catherine, Hussein, Ayman, Hutton, Robert, Ibrahim, Muntaser, Ishengoma, Deus, Jaiteh, Jula, Jallow, Mariatou, Jallow, Muminatou, Jammeh, Kebba, Jasseh, Momodou, Jobarteh, Amie, Johnson, Kimberly, Joseph, Sarah, Jyothi, Dushyanth, Kachala, David, Kamuya, Dorcas, Kanyi, Haddy, Karunajeewa, Harin, Karunaweera, Nadira, Keita, Momodou, Kerasidou, Angeliki, Khan, Aja, Kivinen, Katja, Kokwaro, Gilbert, Konate, Amadou, Konate, Salimata, Koram, Kwadwo, Kwiatkowski, Dominic, Laman, Moses, Si, Le, Leffler, Ellen, Lemnge, Martha, Lin, Enmoore, Alioune, Ly, Macharia, Alexander, Macinnis, Bronwyn, Mai, Nguyen, Makani, Julie, Malangone, Cinzia, Mangano, Valentina, Manjurano, Alphaxard, Manneh, Lamin, Manning, Laurens, Manske, Magnus, Marsh, Vicki, Maslen, Gareth, Maxwell, Caroline, Mbunwe, Eric, Mccreight, Marilyn, Mead, Daniel, Mendy, Alieu, Mendy, Anthony, Mensah, Nathan, Michon, Pascal, Miles, Alistair, Miotto, Olivo, Modiano, David, Mohamed, Hiba, Molloy, Sile, Molyneux, Malcolm, Molyneux, Sassy, Moore, Mike, Moyes, Catherine, Mtei, Frank, Mtove, George, Mueller, Ivo, Mugri, Regina, Munthali, Annie, Mutabingwa, Theonest, Nadjm, Behzad, Ndi, Andre, Ndila, Carolyne, Newton, Charles, Niangaly, Amadou, Njie, Haddy, Njie, Jalimory, Njie, Madi, Njie, Malick, Njie, Sophie, Njiragoma, Labes, Nkrumah, Francis, Ntunthama, Neema, Nyika, Aceme, Nyirongo, Vysaul, O'Brien, John, Obu, Herbert, Oduro, Abraham, Ofori, Alex, Olaniyan, Subulade, Olaosebikan, Rasaq, Oluoch, Tom, Omotade, Olayemi, Oni, Olajumoke, Onykwelu, Emmanuel, Opi, Daniel, Orimadegun, Adebola, O'Riordan, Sean, Ouedraogo, Issa, Oyola, Samuel, Parker, Michael, Pearson, Richard, Pensulo, Paul, Phiri, Ajib, Phu, Nguyen, Pinder, Margaret, Pirinen, Matti, Plowe, Chris, Potter, Claire, Poudiougou, Belco, Puijalon, Odile, Quyen, Nguyen, Ragoussis, Ioannis, Ragoussis, Jiannis, Rasheed, Oba, Reeder, John, Reyburn, Hugh, Riley, Eleanor, Risley, Paul, Rockett, Kirk, Rodford, Joanne, Rogers, Jane, Rogers, William, Ruano-Rubio, Valentín, Sabally-Ceesay, Kumba, Sadiq, Abubacar, Saidy-Khan, Momodou, Saine, Horeja, Sakuntabhai, Anavaj, Sall, Abdourahmane, Sambian, David, Sambou, Idrissa, Sanjoaquin, Miguel, Shah, Shivang, Shelton, Jennifer, Siba, Peter, Silva, Nilupa, Simmons, Cameron, Simpore, Jaques, Singhasivanon, Pratap, Sinh, Dinh, Sirima, Sodiomon, Sirugo, Giorgio, Sisay-Joof, Fatoumatta, Sissoko, Sibiry, Small, Kerrin, Somaskantharajah, Elilan, Spencer, Chris, Stalker, Jim, Stevens, Marryat, Suriyaphol, Prapat, Sylverken, Justice, Taal, Bintou, Tall, Adama, Taylor, Terrie, Teo, Yik, Thai, Cao, Thera, Mahamadou, Titanji, Vincent, Toure, Ousmane, Troye-Blomberg, Marita, Usen, Stanley, Vanderwal, Aaron, Wangai, Hannah, Watson, Renee, Williams, Thomas, Wilson, Michael, Wrigley, Rebecca, Yafi, Clarisse, Yamoah, Lawrence, The Wellcome Trust Centre for Human Genetics [Oxford], University of Oxford, London School of Hygiene and Tropical Medicine (LSHTM), The Wellcome Trust Sanger Institute [Cambridge], St Mary's Hospital, Imperial College, TNW and MM are funded through awards from the Wellcome Trust (grants 091758 and 202800 [to TNW] and grant 088634 [to MM]) and DPK and TGC receive support from the Medical Research Council (grant G19/9 [to DPK] and grants MR/K000551/1, MR/M01360X/1, MR/N010469/1, and MC_PC_15103 [to TGC]). The research leading to these results received funding from the European Community's Seventh Framework Programme (FP7/2007-2013, under grant agreement 242095) and from the Medical Research Council (grant G0600718). MalariaGEN is supported by the Wellcome Trust (WT077383/Z/05/Z) and by the Foundation for the National Institutes of Health (grant 566) as part of the Bill & Melinda Gates' Grand Challenges in Global Health Initiative. The Resource Centre for Genomic Epidemiology of Malaria is supported by the Wellcome Trust (grant 090770/Z/09/Z). Support was also provided by the Medical Research Council (grant G0600718). The Wellcome Trust also provides core awards to the Wellcome Trust Centre for Human Genetics (grant 090532/Z/09/Z) and to the Wellcome Trust Sanger Institute (grant 098051). This work forms part of a larger collaboration with the MalariaGEN Consortium, whose members are listed at http://www.malariagen.net/projects/host/consortium-members. This paper is published with permission from the Director of the Kenya Medical Research Institute (KEMRI)., MalariaGEN Consortium (Anavaj Sakuntabhai), and European Project: 242095,EC:FP7:HEALTH,FP7-HEALTH-2009-single-stage,EVIMALAR(2009)
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Case-Control Studies ,Child ,Child, Preschool ,Female ,Gene Frequency ,Genetic Predisposition to Disease ,Humans ,Kenya ,Malaria ,Male ,Polymorphism, Genetic ,Hematology ,macromolecular substances ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,Article ,Genetic ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,parasitic diseases ,[SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,Polymorphism ,Preschool - Abstract
Summary Background Human genetic factors are important determinants of malaria risk. We investigated associations between multiple candidate polymorphisms—many related to the structure or function of red blood cells—and risk for severe Plasmodium falciparum malaria and its specific phenotypes, including cerebral malaria, severe malaria anaemia, and respiratory distress. Methods We did a case-control study in Kilifi County, Kenya. We recruited as cases children presenting with severe malaria to the high-dependency ward of Kilifi County Hospital. We included as controls infants born in the local community between Aug 1, 2006, and Sept 30, 2010, who were part of a genetics study. We tested for associations between a range of candidate malaria-protective genes and risk for severe malaria and its specific phenotypes. We used a permutation approach to account for multiple comparisons between polymorphisms and severe malaria. We judged p values less than 0·005 significant for the primary analysis of the association between candidate genes and severe malaria. Findings Between June 11, 1995, and June 12, 2008, 2244 children with severe malaria were recruited to the study, and 3949 infants were included as controls. Overall, 263 (12%) of 2244 children with severe malaria died in hospital, including 196 (16%) of 1233 with cerebral malaria. We investigated 121 polymorphisms in 70 candidate severe malaria-associated genes. We found significant associations between risk for severe malaria overall and polymorphisms in 15 genes or locations, of which most were related to red blood cells: ABO, ATP2B4, ARL14, CD40LG, FREM3, INPP4B, G6PD, HBA (both HBA1 and HBA2), HBB, IL10, LPHN2 (also known as ADGRL2), LOC727982, RPS6KL1, CAND1, and GNAS. Combined, these genetic associations accounted for 5·2% of the variance in risk for developing severe malaria among individuals in the general population. We confirmed established associations between severe malaria and sickle-cell trait (odds ratio [OR] 0·15, 95% CI 0·11–0·20; p=2·61 × 10−58), blood group O (0·74, 0·66–0·82; p=6·26 × 10−8), and –α3·7-thalassaemia (0·83, 0·76–0·90; p=2·06 × 10−6). We also found strong associations between overall risk of severe malaria and polymorphisms in both ATP2B4 (OR 0·76, 95% CI 0·63–0·92; p=0·001) and FREM3 (0·64, 0·53–0·79; p=3·18 × 10−14). The association with FREM3 could be accounted for by linkage disequilibrium with a complex structural mutation within the glycophorin gene region (comprising GYPA, GYPB, and GYPE) that encodes for the rare Dantu blood group antigen. Heterozygosity for Dantu was associated with risk for severe malaria (OR 0·57, 95% CI 0·49–0·68; p=3·22 × 10−11), as was homozygosity (0·26, 0·11–0·62; p=0·002). Interpretation Both ATP2B4 and the Dantu blood group antigen are associated with the structure and function of red blood cells. ATP2B4 codes for plasma membrane calcium-transporting ATPase 4 (the major calcium pump on red blood cells) and the glycophorins are ligands for parasites to invade red blood cells. Future work should aim at uncovering the mechanisms by which these polymorphisms can result in severe malaria protection and investigate the implications of these associations for wider health. Funding Wellcome Trust, UK Medical Research Council, European Union, and Foundation for the National Institutes of Health as part of the Bill & Melinda Gates Grand Challenges in Global Health Initiative.
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- 2018
24. Pattern of malaria transmission along the Rahad River basin, Eastern Sudan
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Ibrahim Muntaser, Kweka Eliningaya J, Elzaki Mervet M, Himeidan Yousif E, and Elhassan Ibrahim M
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Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Understanding malaria vector mosquitoes and their infectivity dynamics is of importance in setting up intervention and control programmes. Patterns of malaria transmission have been shown to differ between non-irrigated and irrigated semi-arid areas of eastern Sudan. However, very little information is available regarding malaria transmission dynamics along the seasonal river's basin. Such information is required for the design of effective vector control strategies. Methods A longitudinal study for mosquito sampling using pyrethrum spray catch (PSC) was conducted in two villages (Koka & Um Salala) along the Rahad River basin from December 2005 to October 2006. The Plasmodium falciparum circumsporozoite (CSP) and human blood index (HBI) were detected by ELISA. Three seasons were considered and the surveys represented cool dry, hot dry and rainy seasons were November - February, March - June, July - October, respectively. The CSP was compared between the seasons and populations using Chi-square test. The differences between the seasons and the populations in the other entomological indices, including Entomological Inoculation Rates (EIR), were measured using Tukey-Kramer HSD and Student T-test, respectively. The association between An. arabiensis density and monthly total rainfall was examined using regression analysis. Results A total of 1,402 adult female anopheline mosquitoes were sampled, of which 98% were An. gambiae complex; the rest were An. rufipes. All specimens of An. gambiae complex identified by the PCR were An. arabiensis. Bimodal annual peaks of An. arabiensis densities were observed following the peak of rainfall and recess of the Rahad River after a time- lag of two months (Koka r = 0.79, d.f. = 1, P = 0.05; Um Salala, r = 0.88, d.f. = 1, P = 0.02). The CSP differed significantly among the seasons only in Koka (P = 0.0009) where the mean was nine times higher than in Um Salala (P = 0.0014). Active transmission was observed in Koka during the hot, dry season (CSP = 6.25%) and the EIR was observed to be 0.01 ib/p/n during this time. The EIR peaked to 0.71 ib/p/n during the rainy season and decreased to 0.18 ib/p/n during the minor peak of the cool dry season (P = 0.54). The combined annual average of the EIR for both populations was 55.48 ib/p/y and, typically, it would take approximately 192.7 days for an individual to receive an infective bite from An. arabiensis. Conclusion The bimodal annual peaks and the active transmission observed during the hot dry season suggested low to moderate perennial malaria transmission pattern. Infectivity and transmission rates increased with proximity to the river following the peak of rainfall and the subsequent recession in the flow of the Rahad River. Current vector interventions can be integrated with larval control and should be formatted in accordance with targeted according to the time and space.
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- 2011
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25. The spatial-temporal clustering of Plasmodium falciparum infection over eleven years in Gezira State, The Sudan
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Snow Robert W, Elhassan Ibrahim M, Bushra Sayed M, Nour Bakri YM, Mirghani Samia E, and Noor Abdisalan M
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Arctic medicine. Tropical medicine ,RC955-962 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Malaria infection and disease exhibit microgeographic heterogeneity which if predictable could have implications for designing small-area intervention. Here, the space-time clustering of Plasmodium falciparum infections using data from repeat cross-sectional surveys in Gezira State, a low transmission area in northern Sudan, is investigated. Methods Data from cross-sectional surveys undertaken in January each year from 1999-2009 in 88 villages in the Gezira state were assembled. During each survey, about a 100 children between the ages two to ten years were sampled to examine the presence of P. falciparum parasites. In 2009, all the villages were mapped using global positioning systems. Cluster level data were analysed for spatial-only and space-time clustering using the Bernoulli model and the significance of clusters were tested using the Kulldorff scan statistic. Results Over the study period, 96,022 malaria slide examinations were undertaken and the P. falciparum prevalence was 8.6% in 1999 and by 2009 this had reduced to 1.6%. The cluster analysis showed the presence of one significant spatial-only cluster in each survey year and one significant space-time cluster over the whole study period. The primary spatial-only clusters in 10/11 years were either contained within or overlapped with the primary space-time cluster. Conclusion The results of the study confirm the generally low malaria transmission in the state of Gezira and the presence of spatial and space-time clusters concentrated around a specific area in the south of the state. Improved surveillance data that allows for the analysis of seasonality, age and other risk factors need to be collected to design effective small area interventions as Gezira state targets malaria elimination.
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- 2010
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26. Loss of balancing selection in the βS globin locus
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Ishag Hani B, Khalil Eltahir AG, Elhassan Ibrahim M, Elzein Abeir M, Almugtaba Ibrahim A, Hussain Ayman A, Salih Niven A, Mohammed Hiba S, Kwiatkowski Dominic, and Ibrahim Muntaser E
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Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Probably the best example of the rise and maintenance of balancing selection as an evolutionary trend is the role of S-haemoglobin (HbS - rs334) in protecting from malaria. Yet, the dynamics of such a process remains poorly understood, particularly in relation to different malaria transmission rates and the genetic background of the affected populations. Methods We investigated the association of haemoglobin HbS in protection from clinical episodes of malaria in two populations/villages where malaria is endemic, but mostly presenting in mild clinical forms. Five-hundred and forty-six individuals comprising 65 and 82 families from the Hausa and Massalit villages respectively were genotyped for HbS. Allele and genotype frequencies as well as departure from Hardy-Weinberg Equilibrium were estimated from four-hundred and seventy independent genotypes across different age groups. Age-group frequencies were used to calculate the coefficient-of-fitness and to simulate the expected frequencies in future generations. Results Genotype frequencies were within Hardy-Weinberg expectations in Hausa and Massalit in the total sample set but not within the different age groups. There was a trend for a decrease of the HbS allele frequency in Hausa and an increase of frequency in Massalit. Although the HbS allele was able to confer significant protection from the clinical episodes of malaria in the two populations, as suggested by the odds ratios, the overall relative fitness of the HbS allele seems to have declined in Hausa. Conclusions Such loss of balancing selection could be due to a combined effect of preponderance of non-clinical malaria in Hausa, and the deleterious effect of the homozygous HbS under circumstances of endogamy.
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- 2010
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27. Chloroquine-resistant Plasmodium vivax malaria in Debre Zeit, Ethiopia
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Muchohi Simon, Elhassan Ibrahim, Tesfaye Gezahegn, Yamuah Lawrence, Petros Beyene, Teka Hiwot, Kokwaro Gilbert, Aseffa Abraham, and Engers Howard
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Arctic medicine. Tropical medicine ,RC955-962 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Plasmodium vivax accounts for about 40% of all malaria infection in Ethiopia. Chloroquine (CQ) is the first line treatment for confirmed P. vivax malaria in the country. The first report of CQ treatment failure in P. vivax was from Debre Zeit, which suggested the presence of chloroquine resistance. Methods An in vivo drug efficacy study was conducted in Debre Zeit from June to August 2006. Eighty-seven patients with microscopically confirmed P. vivax malaria, aged between 8 months and 52 years, were recruited and treated under supervision with CQ (25 mg/kg over three days). Clinical and parasitological parameters were assessed during the 28 day follow-up period. CQ and desethylchloroquine (DCQ) blood and serum concentrations were determined with high performance liquid chromatography (HPLC) in patients who showed recurrent parasitaemia. Results Of the 87 patients recruited in the study, one was lost to follow-up and three were excluded due to P. falciparum infection during follow-up. A total of 83 (95%) of the study participants completed the follow-up. On enrolment, 39.8% had documented fever and 60.2% had a history of fever. The geometric mean parasite density of the patients was 7045 parasites/μl. Among these, four patients had recurrent parasitaemia on Day 28. The blood CQ plus DCQ concentrations of these four patients were all above the minimal effective concentration (> 100 ng/ml). Conclusion Chloroquine-resistant P. vivax parasites are emerging in Debre Zeit, Ethiopia. A multi-centre national survey is needed to better understand the extent of P. vivax resistance to CQ in Ethiopia.
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- 2008
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28. Seroprevalence of Neospora caninum in cattle in Sudan
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Khalid A Enan, Abdelrahim M. ElHussein, Mohammed O. Hussien, Amira Mohamed Elhassan Ibrahim, Khalid M. Taha, Mohammed S. Mohammed, and Abdelghafar M. Elfahal
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Veterinary medicine ,cELISA ,General Veterinary ,biology ,Significant difference ,Prevalence ,Neospora caninum ,biology.organism_classification ,medicine.disease ,Crossbreed ,SF1-1100 ,Animal culture ,Sudan ,Coccidiosis ,Animal science ,River nile ,parasitic diseases ,SF600-1100 ,Herd ,medicine ,Seroprevalence ,Cattle - Abstract
Aim: This cross-sectional survey was conducted to detect anti- N. caninum antibodies in bovine dams' sera samples in nine States of the Sudan. Materials and Methods: Two hundred and seventy six bovine dams' sera samples collected from nine States in the Sudan were screened for anti-Neospora caninum antibodies using a commercial competitive ELISA (cELISA) kits. Results: The results showed an overall prevalence rate of 15.9% (range 6.7% - 70%) of Neospora caninum antibodies. The prevalence rates were high in White Nile (70%) and North Kordofan (30%), moderate in the Northern (15.6%), Red Sea (13.3%) States and was low in the South Kordofan (9.4%) and River Nile (6.7%). States with high values of percentage inhibition (PI) detected in White Nile State compared to other States. No antibodies were detected in El Gadarif, Kassala and South Darfur States. The prevalence was observed to be high in crossbred dams (70%) with statistically significant difference (P
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- 2012
29. Second-Line Chemotherapy in Advanced Non-Small Cell Lung Cancer (NSCLC): Single Institution Experience
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Attia, Hanaa, primary, Y. Ibrahim, Noha, additional, Talima, Soha, additional, and Elhassan, Ibrahim, additional
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- 2017
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30. Genetic determinants of anti-malarial acquired immunity in a large multi-centre study
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Shelton, Jennifer MG, Corran, Patrick, Risley, Paul, Silva, Nilupa, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Craik, Rachel, Cornelius, Victoria, Hensmann, Meike, Molloy, Sile, Sepulveda, Nuno, Clark, Taane G, Band, Gavin, Clarke, Geraldine M, Spencer, Christopher CA, Kerasidou, Angeliki, Campino, Susana, Auburn, Sarah, Tall, Adama, Ly, Alioune Badara, Mercereau-Puijalon, Odile, Sakuntabhai, Anavaj, Djimdé, Abdoulaye, Maiga, Boubacar, Touré, Ousmane, Doumbo, Ogobara K, Dolo, Amagana, Troye-Blomberg, Marita, Mangano, Valentina D, Verra, Frederica, Modiano, David, Bougouma, Edith, Sirima, Sodiomon B, Ibrahim, Muntaser, Hussain, Ayman, Eid, Nahid, Elzein, Abier, Mohammed, Hiba, Elhassan, Ahmed, Elhassan, Ibrahim, Williams, Thomas N, Ndila, Carolyne, Macharia, Alexander, Marsh, Kevin, Manjurano, Alphaxard, Reyburn, Hugh, Lemnge, Martha, Ishengoma, Deus, Carter, Richard, Karunaweera, Nadira, Fernando, Deepika, Dewasurendra, Rajika, Drakeley, Christopher J, Riley, Eleanor M, Kwiatkowski, Dominic P, Rockett, Kirk A, MalariaGEN Consortium, The Wellcome Trust Centre for Human Genetics [Oxford], University of Oxford [Oxford], London School of Hygiene and Tropical Medicine (LSHTM), National Institute for Biological Standards and Control (NIBSC), Medicines and Healthcare Products Regulatory Agency (MHRA), Nuffield Department of Population Health [Oxford], The Wellcome Trust Sanger Institute [Cambridge], Unité d'Epidémiologie des Maladies Infectieuses, Institut Pasteur de Dakar, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Immunologie Moléculaire des Parasites, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Génétique fonctionnelle des Maladies infectieuses - Functional Genetics of Infectious Diseases, Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris], Malaria Research and Training Center [Bamako, Mali], Université de Bamako, Stockholm University, Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Centre National de Recherche et de Formation sur le Paludisme [Ouagadougou, Burkina Faso] (CNRFP), University of Khartoum, KEMRI-Wellcome Trust Research Programme (KWTRP), Tumaini University Makumira, National Institute for Medical Research [Tanzania] (NIMR), University of Edinburgh, University of Colombo [Sri Lanka], MalariaGEN is supported by the Wellcome Trust (077383/Z/05/Z) and by the Foundation for the National Institutes of Health (566) as part of the Bill & Melinda Gates Grand Challenges in Global Health Initiative. The Resource Centre for Genomic Epidemiology of Malaria is supported by the Wellcome Trust (090770/Z/09/Z). Support was also provided by the Medical Research Council (G0600718). DPK receives support from the Medical Research Council (G19/9). CCAS was supported by a Wellcome Trust Career Development Fellowship (097364/Z/11/Z). The Wellcome Trust also provides core awards to The Wellcome Trust Centre for Human Genetics (075491/Z/04, 090532/Z/09/Z) and the Wellcome Trust Sanger Institute (077012/Z/05/Z). MTB and BM received funding through the EU Network of Excellence EviMalar. VDM was funded by a Biomalpar (European Community’s Sixth Framework Programme) PhD fellowship. FV was funded by the Italian Malaria Network, sponsored by Compagnia di San Paolo, Turin, Italy. TNW is supported by a Senior Research Fellowship from the Wellcome Trust (091758/Z/10/Z). This study was conducted as part of the Joint Malaria Programme, a collaboration between the National Institute for Medical Research (NIMR), Kilimanjaro Christian Medical College (KCMC), the London School of Hygiene and Tropical Medicine (LSHTM) and the Centre for Medical Parasitology, University of Copenhagen (CMP) with funding from the UK Medical Research Council (GG9901439) and the Danish International Development Agency. CJD is supported by the Wellcome Trust (091924). RD is supported by the University of Colombo Research Grants 2011 (AP/3/2011/PG/15)., European Project: 26843,BIOMALPAR, University of Oxford, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), and Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome] (UNIROMA)
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Male ,Hemoglobin, Sickle ,Antibodies, Protozoan ,Sickle ,MESH: Linear Models ,MESH: Child ,Child ,HbAS ,MESH: Infant, Newborn ,Antibody ,CD36 ,Genotype ,Malaria ,Sickle cell trait ,Adolescent ,Adult ,Africa South of the Sahara ,Child, Preschool ,Female ,Humans ,Infant ,Infant, Newborn ,Linear Models ,Sri Lanka ,Young Adult ,Infectious Diseases ,Parasitology ,MESH: Infant ,MESH: Young Adult ,Protozoan ,[SDV.IMM]Life Sciences [q-bio]/Immunology ,MESH: Malaria ,Antibodies ,parasitic diseases ,MESH: Antibodies, Protozoan ,Hemoglobin ,MESH: Africa South of the Sahara ,Preschool ,MESH: Sri Lanka ,MESH: Adolescent ,MESH: Humans ,Research ,MESH: Child, Preschool ,MESH: Adult ,Newborn ,MESH: Hemoglobin, Sickle ,MESH: Male ,antibody ,cd36 ,genotype ,hbas ,malaria ,sickle cell trait ,infectious diseases ,parasitology ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,MESH: Female - Abstract
Background Many studies report associations between human genetic factors and immunity to malaria but few have been reliably replicated. These studies are usually country-specific, use small sample sizes and are not directly comparable due to differences in methodologies. This study brings together samples and data collected from multiple sites across Africa and Asia to use standardized methods to look for consistent genetic effects on anti-malarial antibody levels. Methods Sera, DNA samples and clinical data were collected from 13,299 individuals from ten sites in Senegal, Mali, Burkina Faso, Sudan, Kenya, Tanzania, and Sri Lanka using standardized methods. DNA was extracted and typed for 202 Single Nucleotide Polymorphisms with known associations to malaria or antibody production, and antibody levels to four clinical grade malarial antigens [AMA1, MSP1, MSP2, and (NANP)4] plus total IgE were measured by ELISA techniques. Regression models were used to investigate the associations of clinical and genetic factors with antibody levels. Results Malaria infection increased levels of antibodies to malaria antigens and, as expected, stable predictors of anti-malarial antibody levels included age, seasonality, location, and ethnicity. Correlations between antibodies to blood-stage antigens AMA1, MSP1 and MSP2 were higher between themselves than with antibodies to the (NANP)4 epitope of the pre-erythrocytic circumsporozoite protein, while there was little or no correlation with total IgE levels. Individuals with sickle cell trait had significantly lower antibody levels to all blood-stage antigens, and recessive homozygotes for CD36 (rs321198) had significantly lower anti-malarial antibody levels to MSP2. Conclusion Although the most significant finding with a consistent effect across sites was for sickle cell trait, its effect is likely to be via reducing a microscopically positive parasitaemia rather than directly on antibody levels. However, this study does demonstrate a framework for the feasibility of combining data from sites with heterogeneous malaria transmission levels across Africa and Asia with which to explore genetic effects on anti-malarial immunity. Electronic supplementary material The online version of this article (doi:10.1186/s12936-015-0833-x) contains supplementary material, which is available to authorized users.
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- 2015
31. Additional file 3: of Genetic determinants of anti-malarial acquired immunity in a large multi-centre study
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Shelton, Jennifer, Corran, Patrick, Risley, Paul, Nilupa Silva, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Craik, Rachel, Cornelius, Victoria, Hensmann, Meike, Molloy, Sile, Sepulveda, Nuno, Taane Clark, Band, Gavin, Clarke, Geraldine, Spencer, Christopher, Kerasidou, Angeliki, Campino, Susana, Auburn, Sarah, Tall, Adama, Alioune Ly, Mercereau-Puijalon, Odile, Anavaj Sakuntabhai, Abdoulaye DjimdĂŠ, Boubacar Maiga, Ousmane TourĂŠ, Ogobara Doumbo, Amagana Dolo, Troye-Blomberg, Marita, Mangano, Valentina, Verra, Frederica, Modiano, David, Bougouma, Edith, Sodiomon Sirima, Muntaser Ibrahim, Hussain, Ayman, Eid, Nahid, Abier Elzein, Mohammed, Hiba, Elhassan, Ahmed, Elhassan, Ibrahim, Williams, Thomas, Ndila, Carolyne, Macharia, Alexander, Marsh, Kevin, Alphaxard Manjurano, Reyburn, Hugh, Lemnge, Martha, Deus Ishengoma, Carter, Richard, Karunaweera, Nadira, Fernando, Deepika, Rajika Dewasurendra, Drakeley, Christopher, Riley, Eleanor, Kwiatkowski, Dominic, and Rockett, Kirk
- Abstract
Additional File LFST1A: Details of gene regions selected for genotyping and the SNP assay design details. This file contains a list of the genes from which SNPs were selected and typed for this study. Information is provided on the gene and its genomic location with respect to the Human Reference genome build GRCh37. Also provided is a table containing the assay design details for each SNP used in this study for the Agena Biosciences iPLEX genotyping platform. SNPs are grouped into multiplexes as assigned by the assay design software.
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- 2015
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32. Additional file 17: of Genetic determinants of anti-malarial acquired immunity in a large multi-centre study
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Shelton, Jennifer, Corran, Patrick, Risley, Paul, Nilupa Silva, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Craik, Rachel, Cornelius, Victoria, Hensmann, Meike, Molloy, Sile, Sepulveda, Nuno, Taane Clark, Band, Gavin, Clarke, Geraldine, Spencer, Christopher, Kerasidou, Angeliki, Campino, Susana, Auburn, Sarah, Tall, Adama, Alioune Ly, Mercereau-Puijalon, Odile, Anavaj Sakuntabhai, Abdoulaye DjimdĂŠ, Boubacar Maiga, Ousmane TourĂŠ, Ogobara Doumbo, Amagana Dolo, Troye-Blomberg, Marita, Mangano, Valentina, Verra, Frederica, Modiano, David, Bougouma, Edith, Sodiomon Sirima, Muntaser Ibrahim, Hussain, Ayman, Eid, Nahid, Abier Elzein, Mohammed, Hiba, Elhassan, Ahmed, Elhassan, Ibrahim, Williams, Thomas, Ndila, Carolyne, Macharia, Alexander, Marsh, Kevin, Alphaxard Manjurano, Reyburn, Hugh, Lemnge, Martha, Deus Ishengoma, Carter, Richard, Karunaweera, Nadira, Fernando, Deepika, Rajika Dewasurendra, Drakeley, Christopher, Riley, Eleanor, Kwiatkowski, Dominic, and Rockett, Kirk
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Additional Figure SF5: Plot for 178 SNPs with logged anti-malarial antibody levels. Plot for the P-values of the analyses of 178 SNPs with logged anti-malarial antibody levels Adjusted for age, gender, parasite density, village (>20), ethnicity (>20), sample month (>20) and study. This is an extension to that shown in the main text and is a reduced dataset as not all sites provided parasitaemia data.
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- 2015
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33. Genetic determinants of anti-malarial acquired immunity in a large multi-centre study
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Shelton, Jennifer M. G., Corran, Patrick, Risley, Paul, Silva, Nilupa, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Craik, Rachel, Cornelius, Victoria, Hensmann, Meike, Molloy, Sile, Sepulveda, Nuno, Clark, Taane G., Band, Gavin, Clarke, Geraldine M., Spencer, Christopher C. A., Kerasidou, Angeliki, Campino, Susana, Auburn, Sarah, Tall, Adama, Ly, Alioune Badara, Mercereau-Puijalon, Odile, Sakuntabhai, Anavaj, Djimde, Abdoulaye, Maiga, Boubacar, Toure, Ousmane, Doumbo, Ogobara K., Dolo, Amagana, Troye-Blomberg, Marita, Mangano, Valentina D., Verra, Frederica, Modiano, David, Bougouma, Edith, Sirima, Sodiomon B., Ibrahim, Muntaser, Hussain, Ayman, Eid, Nahid, Elzein, Abier, Mohammed, Hiba, Elhassan, Ahmed, Elhassan, Ibrahim, Williams, Thomas N., Ndila, Carolyne, Macharia, Alexander, Marsh, Kevin, Manjurano, Alphaxard, Reyburn, Hugh, Lemnge, Martha, Ishengoma, Deus, Carter, Richard, Karunaweera, Nadira, Fernando, Deepika, Dewasurendra, Rajika, Drakeley, Christopher J., Riley, Eleanor M., Kwiatkowski, Dominic P., Rockett, Kirk A., Shelton, Jennifer M. G., Corran, Patrick, Risley, Paul, Silva, Nilupa, Hubbart, Christina, Jeffreys, Anna, Rowlands, Kate, Craik, Rachel, Cornelius, Victoria, Hensmann, Meike, Molloy, Sile, Sepulveda, Nuno, Clark, Taane G., Band, Gavin, Clarke, Geraldine M., Spencer, Christopher C. A., Kerasidou, Angeliki, Campino, Susana, Auburn, Sarah, Tall, Adama, Ly, Alioune Badara, Mercereau-Puijalon, Odile, Sakuntabhai, Anavaj, Djimde, Abdoulaye, Maiga, Boubacar, Toure, Ousmane, Doumbo, Ogobara K., Dolo, Amagana, Troye-Blomberg, Marita, Mangano, Valentina D., Verra, Frederica, Modiano, David, Bougouma, Edith, Sirima, Sodiomon B., Ibrahim, Muntaser, Hussain, Ayman, Eid, Nahid, Elzein, Abier, Mohammed, Hiba, Elhassan, Ahmed, Elhassan, Ibrahim, Williams, Thomas N., Ndila, Carolyne, Macharia, Alexander, Marsh, Kevin, Manjurano, Alphaxard, Reyburn, Hugh, Lemnge, Martha, Ishengoma, Deus, Carter, Richard, Karunaweera, Nadira, Fernando, Deepika, Dewasurendra, Rajika, Drakeley, Christopher J., Riley, Eleanor M., Kwiatkowski, Dominic P., and Rockett, Kirk A.
- Abstract
Background: Many studies report associations between human genetic factors and immunity to malaria but few have been reliably replicated. These studies are usually country-specific, use small sample sizes and are not directly comparable due to differences in methodologies. This study brings together samples and data collected from multiple sites across Africa and Asia to use standardized methods to look for consistent genetic effects on anti-malarial antibody levels. Methods: Sera, DNA samples and clinical data were collected from 13,299 individuals from ten sites in Senegal, Mali, Burkina Faso, Sudan, Kenya, Tanzania, and Sri Lanka using standardized methods. DNA was extracted and typed for 202 Single Nucleotide Polymorphisms with known associations to malaria or antibody production, and antibody levels to four clinical grade malarial antigens [AMA1, MSP1, MSP2, and (NANP) 4] plus total IgE were measured by ELISA techniques. Regression models were used to investigate the associations of clinical and genetic factors with antibody levels. Results: Malaria infection increased levels of antibodies to malaria antigens and, as expected, stable predictors of anti-malarial antibody levels included age, seasonality, location, and ethnicity. Correlations between antibodies to blood-stage antigens AMA1, MSP1 and MSP2 were higher between themselves than with antibodies to the (NANP)(4) epitope of the pre-erythrocytic circumsporozoite protein, while there was little or no correlation with total IgE levels. Individuals with sickle cell trait had significantly lower antibody levels to all blood-stage antigens, and recessive homozygotes for CD36 (rs321198) had significantly lower anti-malarial antibody levels to MSP2. Conclusion: Although the most significant finding with a consistent effect across sites was for sickle cell trait, its effect is likely to be via reducing a microscopically positive parasitaemia rather than directly on antibody levels. However, this study does demons
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- 2015
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34. Knowledge, attitudes, and practices (KAP) during the malaria elimination phase: A household-based cross-sectional survey.
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Abdelwahab, Siddig Ibrahim, Elhassan, Ibrahim M., Albasheer, Osama, Taha, Manal Mohamed Elhassan, Ali, Nasir Ahmed, Al-Jabiri, Yahya Salem, Madkhali, Waleed, Sahly, Ahmad A., Oraibi, Bassem, Altraifi, Ahmed Abdallah Ahmed, Hakami, Nasser, Alshehri, Mohammed M., Abu Shaphe, Mohammad, Beg, Rashid Ali, and Alshamrani, Meshal
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- 2023
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35. First report of Neospora caninum infection in cattle in Sudan
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Abdel Rahim Mohamed El Hussein, Abdelghafar M. Elfahal, and Amira Mohamed Elhassan Ibrahim
- Subjects
Male ,Veterinary medicine ,Prevalence ,Antibodies, Protozoan ,Cattle Diseases ,Enzyme-Linked Immunosorbent Assay ,Sudan ,Animal science ,Food Animals ,Pregnancy ,Risk Factors ,Seroepidemiologic Studies ,parasitic diseases ,Animals ,Dairy cattle ,biology ,Individual animal ,Dairy herds ,Coccidiosis ,Reproduction ,Neospora ,Abortion, Veterinary ,biology.organism_classification ,Neospora caninum ,Neospora caninum infection ,Dairying ,Cross-Sectional Studies ,Fertility ,Pregnancy Complications, Parasitic ,Elisa test ,Herd ,Animal Science and Zoology ,Cattle ,Female ,Seasons - Abstract
A cross-sectional survey was conducted in Sudan to determine sero-prevalence and risk factors associated with Neospora caninum infection in non-vaccinated dairy herds and to assess importance of the disease. Blood samples were collected from a total of 262 animals from 25 herds. Sera were tested for antibodies against N. caninum using ELISA test. The prevalence rates of N. caninum antibodies in cattle were high both at herd level (44%) and at individual animal level (10.7%). Herd level infection rates were similar in Khartoum State (43.7%) and at Gazira States (44.4%). The overall prevalence rates were higher (16.1%) in Gazira State than in Khartoum State (9%) but with no significant variation. The sero-prevalence at individual animal level was significantly higher (p0.05) in animals with history of abortion (12.8%) than in apparently healthy animal (11.3%), animal with history of infertility (8.1%), or neonatal death of calves (4.3%). In addition, significantly higher (P0.05) sero-prevalence was observed in samples collected during the rainy season (6.87%) than winter (3.05%) or summer (0.76%). However, no significant differences in sero-prevalence due to locality, animal breed, sex, and age were observed (p0.05). This preliminary study reveals for the first time the existence of natural N. caninum infection in Sudan. Also, the findings of the present study indicated that this disease is highly prevalent in two major areas of dairy production in the country, and this calls for control strategy to be implemented.
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- 2011
36. Prevalence and Risk Factors of Hepatitis B Virus in Jazan Region, Saudi Arabia: Cross-Sectional Health Facility Based Study
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Ageely, Hussein, primary, Mahfouz, Mohamed Salih, additional, Gaffar, Abdelrahim, additional, Elmakki, Erwa, additional, Elhassan, Ibrahim, additional, Yasin, Abu Obaida, additional, and Bani, Ibrahim, additional
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- 2015
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37. Seroepidemiology ofToxoplasma gondiiamongst Pregnant Women in Jazan Province, Saudi Arabia
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Aqeely, Hussein, primary, El-Gayar, Eman K., additional, Perveen Khan, Darakhshan, additional, Najmi, Abdullah, additional, Alvi, Ayesha, additional, Bani, Ibrahim, additional, Mahfouz, Mohamed Salih, additional, Abdalla, Saif Elden, additional, and Elhassan, Ibrahim M., additional
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- 2014
- Full Text
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38. Immunity against HIV/AIDS, Malaria, and Tuberculosis during Co-Infections with Neglected Infectious Diseases : Recommendations for the European Union Research Priorities.
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Boraschi, Diana, Abebe Alemayehu, Markos, Aseffa, Abraham, Chiodi, Francesca, Chisi, John, Del Prete, Gianfranco, Doherty, T Mark, Elhassan, Ibrahim, Engers, Howard, Gyan, Ben, Harandi, Ali M, Kariuki, Thomas, Kironde, Fred, Kouriba, Bourema, Langhorne, Jean, Laskay, Tamás, Medaglini, Donata, Olesen, Ole, Onyebujoh, Philip, Palma, Carla, Sauerwein, Robert, Sibanda, Elopy, Steinhoff, Ulrich, Tagliabue, Aldo, Thiel, Andreas, Vahedi, Mahnaz, Troye-Blomberg, Marita, Boraschi, Diana, Abebe Alemayehu, Markos, Aseffa, Abraham, Chiodi, Francesca, Chisi, John, Del Prete, Gianfranco, Doherty, T Mark, Elhassan, Ibrahim, Engers, Howard, Gyan, Ben, Harandi, Ali M, Kariuki, Thomas, Kironde, Fred, Kouriba, Bourema, Langhorne, Jean, Laskay, Tamás, Medaglini, Donata, Olesen, Ole, Onyebujoh, Philip, Palma, Carla, Sauerwein, Robert, Sibanda, Elopy, Steinhoff, Ulrich, Tagliabue, Aldo, Thiel, Andreas, Vahedi, Mahnaz, and Troye-Blomberg, Marita
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- 2008
39. Immunological Characteristics of Hyperreactive Malarial Splenomegaly Syndrome in Sudanese Patients
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Alkadarou, Tayseer, primary, Musa, Ahmed, additional, Alkadarou, Abedelgader, additional, Mahfouz, Mohamed S., additional, Troye-Blomberg, Marita, additional, Elhassan, Ahmed M., additional, and Elhassan, Ibrahim M., additional
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- 2013
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40. Pattern of malaria transmission along the Rahad River basin, Eastern Sudan
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Himeidan, Yousif E, primary, Elzaki, Mervet M, additional, Kweka, Eliningaya J, additional, Ibrahim, Muntaser, additional, and Elhassan, Ibrahim M, additional
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- 2011
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41. The spatial-temporal clustering of Plasmodium falciparum infection over eleven years in Gezira State, The Sudan
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Mirghani, Samia E, primary, Nour, Bakri YM, additional, Bushra, Sayed M, additional, Elhassan, Ibrahim M, additional, Snow, Robert W, additional, and Noor, Abdisalan M, additional
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- 2010
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42. Loss of balancing selection in the βS globin locus
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Salih, Niven A, primary, Hussain, Ayman A, additional, Almugtaba, Ibrahim A, additional, Elzein, Abeir M, additional, Elhassan, Ibrahim M, additional, Khalil, Eltahir AG, additional, Ishag, Hani B, additional, Mohammed, Hiba S, additional, Kwiatkowski, Dominic, additional, and Ibrahim, Muntaser E, additional
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- 2010
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43. Chloroquine-resistant Plasmodium vivax malaria in Debre Zeit, Ethiopia
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Teka, Hiwot, primary, Petros, Beyene, additional, Yamuah, Lawrence, additional, Tesfaye, Gezahegn, additional, Elhassan, Ibrahim, additional, Muchohi, Simon, additional, Kokwaro, Gilbert, additional, Aseffa, Abraham, additional, and Engers, Howard, additional
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- 2008
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44. Immunity against HIV/AIDS, Malaria, and Tuberculosis during Co-Infections with Neglected Infectious Diseases: Recommendations for the European Union Research Priorities
- Author
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Boraschi, Diana, primary, Abebe Alemayehu, Markos, additional, Aseffa, Abraham, additional, Chiodi, Francesca, additional, Chisi, John, additional, Del Prete, Gianfranco, additional, Doherty, T. Mark, additional, Elhassan, Ibrahim, additional, Engers, Howard, additional, Gyan, Ben, additional, Harandi, Ali M., additional, Kariuki, Thomas, additional, Kironde, Fred, additional, Kouriba, Bourema, additional, Langhorne, Jean, additional, Laskay, Tamás, additional, Medaglini, Donata, additional, Olesen, Ole, additional, Onyebujoh, Philip, additional, Palma, Carla, additional, Sauerwein, Robert, additional, Sibanda, Elopy, additional, Steinhoff, Ulrich, additional, Tagliabue, Aldo, additional, Thiel, Andreas, additional, Vahedi, Mahnaz, additional, and Troye-Blomberg, Marita, additional
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- 2008
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45. Hyper-reactive Malarial Splenomegaly (HMS) in malaria endemic area in Eastern Sudan
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Allam, Mushal M., primary, Alkadarou, Tayseer A.M.Y., additional, Ahmed, Bashir G., additional, Elkhair, Ikhlas S., additional, Alansary, Elhassan H., additional, Ibrahim, Muntasir E., additional, Elhassan, Ahmed M., additional, and Elhassan, Ibrahim M., additional
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- 2008
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46. In Vivo Switching between Variant Surface Antigens in HumanPlasmodium falciparumInfection
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Staalsoe, Trine, primary, Hamad, Amel A., additional, Hviid, Lars, additional, Elhassan, Ibrahim M., additional, Arnot, David E., additional, and Theander, Thor G., additional
- Published
- 2002
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47. Differential Patterns of Human Immunoglobulin G Subclass Responses to Distinct Regions of a Single Protein, the Merozoite Surface Protein 1 ofPlasmodium falciparum
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Cavanagh, David R., primary, Dobaño, Carlota, additional, Elhassan, Ibrahim M., additional, Marsh, Kevin, additional, Elhassan, Ahmed, additional, Hviid, Lars, additional, Khalil, E. At Tahir G., additional, Theander, Thor G., additional, Arnot, David E., additional, and McBride, Jana S., additional
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- 2001
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48. Seroepidemiology of Toxoplasma gondii amongst Pregnant Women in Jazan Province, Saudi Arabia.
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Aqeely, Hussein, El-Gayar, Eman K., Khan, Darakhshan Perveen, Najmi, Abdullah, Alvi, Ayesha, Bani, Ibrahim, Mahfouz, Mohamed Salih, Abdalla, Saif Elden, and Elhassan, Ibrahim M.
- Subjects
TOXOPLASMA gondii ,SEROPREVALENCE ,PREGNANCY complications ,EPIDEMIOLOGY ,ENZYME-linked immunosorbent assay ,BLOOD sampling - Abstract
Background. Toxoplasma gondii (T. gondii) is an obligate intracellular protozoan parasite of worldwide distribution. There is limited information about the seroprevalence of toxoplasmosis in the southern area of Saudi Arabia. The current study was carried out to determine the prevalence of T. gondii in pregnant women in Jazan province. Materials and Methods. The study was conducted between January and June 2013 and included 195 pregnant women, data on sociodemographic and predisposing factors were collected from each participant. Venous blood samples were collected following standard operating procedures. Serological analysis for latent toxoplasmosis (levels of IgG) and active toxoplasmosis (IgM) was done using Enzyme Linked Immunosorbent Assay (ELISA). Results. The overall seroprevalence of T. gondii in the study area was 24.1%. The seroprevalence of anti-Toxoplasma IgG was 20% (39 out of 195), whereas IgM seropositivity was 6.2% (12 out of 195). Only 4 pregnant women tested positive for both IgG and IgM. The highest IgG and IgM seroprevalence was among the study participants aged 35 to 39 years (13.5% and 35.1%, resp.). The seropositivity rate of T. gondii-specific antibodies was higher among pregnant women from the urban areas than those from rural communities (7.4% versus 0% and 21% versus 15.4% for IgM and IgG, resp.). Conclusions. The seroprevalence of T. gondii was high in pregnant woman in Jazan. The prevalence of toxoplasmosis increases with increase of age. Awareness health education program in Jazan needs to be maintained and developed to targeted pregnant women. [ABSTRACT FROM AUTHOR]
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- 2014
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49. Nine-Year Longitudinal Study of Antibodies to Variant Antigens on the Surface ofPlasmodium falciparum-Infected Erythrocytes
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Giha, Haider A., primary, Staalsoe, Trine, additional, Dodoo, Daniel, additional, Elhassan, Ibrahim M., additional, Roper, Cally, additional, Satti, Gwiria M. H., additional, Arnot, David E., additional, Theander, Thor G., additional, and Hviid, Lars, additional
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- 1999
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50. A Longitudinal Study of Human Antibody Responses to Plasmodium falciparum Rhoptry-Associated Protein 1 in a Region of Seasonal and Unstable Malaria Transmission
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Fonjungo, Peter N., primary, Elhassan, Ibrahim M., additional, Cavanagh, David R., additional, Theander, Thor G., additional, Hviid, Lars, additional, Roper, Cally, additional, Arnot, David E., additional, and McBride, Jana S., additional
- Published
- 1999
- Full Text
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