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2. A large scale metagenomic analysis of the faecal microbiota in preterm infants developing necrotising enterocolitis

4. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

5. SARS-CoV-2 evolution during treatment of chronic infection

6. Harmonisation of in-silico next-generation sequencing based methods for diagnostics and surveillance

7. Genomic reconstruction of the SARS-CoV-2 epidemic in England

9. Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

10. An integrated national scale SARS-CoV-2 genomic surveillance network

11. Oral iron exacerbates colitis and influences the intestinal microbiome

12. A Large Scale Metagenomic Analysis of the Faecal Microbiota in Preterm Infants Developing Necrotising Enterocolitis

13. INVESTIGATION OF FAECAL VOLATILE ORGANIC COMPOUNDS AS BIOMARKERS FOR THE DIAGNOSIS OF NECROTISING ENTERCOLITIS

14. Genomic reconstruction of the SARS-CoV-2 epidemic in England

15. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

16. Recurrent SARS-CoV-2 mutations in immunodeficient patients

17. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

18. COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

19. The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis

20. Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

21. Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021

22. COVID-19 therapeutics: stewardship in England and considerations for antimicrobial resistance.

23. Generation of SARS-CoV-2 escape mutations by monoclonal antibody therapy.

24. A Broad-Host-Range Plasmid Outbreak: Dynamics of IncL/M Plasmids Transferring Carbapenemase Genes.

25. The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.

26. Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period.

27. Impact of SARS-CoV-2 Alpha variant (B.1.1.7) on prisons, England.

28. NDM-1 carbapenemase resistance gene vehicles emergent on distinct plasmid backbones from the IncL/M family.

29. Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission.

30. Selection and characterization of mutational resistance to aztreonam/avibactam in β-lactamase-producing Enterobacterales.

31. Migration of Escherichia coli and Klebsiella pneumoniae Carbapenemase (KPC)-Producing Enterobacter cloacae through Wastewater Pipework and Establishment in Hospital Sink Waste Traps in a Laboratory Model System.

32. Detection in livestock of the human pandemic Escherichia coli ST131 fimH30(R) clone carrying blaCTX-M-27.

33. Emergence of diversity in carbapenemase-producing Escherichia coli ST131, England, January 2014 to June 2016.

34. Oral iron exacerbates colitis and influences the intestinal microbiome.

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