18 results on '"Ellegaard, Martin R."'
Search Results
2. Corroborating written history with ancient DNA: The case of the Well-man described in an Old Norse saga
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Ellegaard, Martin R., Ebenesersdóttir, S. Sunna, Moore, Kristjan H.S., Petersén, Anna, Vågene, Åshild J., Bieker, Vanessa C., Denham, Sean D., Cavalleri, Gianpiero L., Gilbert, Edmund, Werge, Thomas, Hansen, Thomas F., Kockum, Ingrid, Alfredsson, Lars, Olsson, Tomas, Hovig, Eivind, Gilbert, M. Thomas P., Stefánsson, Kári, Stenøien, Hans K., Helgason, Agnar, and Martin, Michael D.
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- 2024
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3. Genomic insights into the secondary aquatic transition of penguins
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Cole, Theresa L., Zhou, Chengran, Fang, Miaoquan, Pan, Hailin, Ksepka, Daniel T., Fiddaman, Steven R., Emerling, Christopher A., Thomas, Daniel B., Bi, Xupeng, Fang, Qi, Ellegaard, Martin R., Feng, Shaohong, Smith, Adrian L., Heath, Tracy A., Tennyson, Alan J. D., Borboroglu, Pablo García, Wood, Jamie R., Hadden, Peter W., Grosser, Stefanie, Bost, Charles-André, Cherel, Yves, Mattern, Thomas, Hart, Tom, Sinding, Mikkel-Holger S., Shepherd, Lara D., Phillips, Richard A., Quillfeldt, Petra, Masello, Juan F., Bouzat, Juan L., Ryan, Peter G., Thompson, David R., Ellenberg, Ursula, Dann, Peter, Miller, Gary, Dee Boersma, P., Zhao, Ruoping, Gilbert, M. Thomas P., Yang, Huanming, Zhang, De-Xing, and Zhang, Guojie
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- 2022
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4. Corroborating written history with ancient DNA:The case of the Well-man described in an Old Norse saga
- Author
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Ellegaard, Martin R., Ebenesersdóttir, S. Sunna, Moore, Kristjan H. S., Petersén, Anna, Vågene, Åshild J., Bieker, Vanessa C., Denham, Sean D., Cavalleri, Gianpiero L., Gilbert, Edmund, Werge, Thomas, Hansen, Thomas F., Kockum, Ingrid, Alfredsson, Lars, Olsson, Tomas, Hovig, Eivind, Gilbert, M. Thomas P., Stefánsson, Kári, Stenøien, Hans K., Helgason, Agnar, Martin, Michael D., Ellegaard, Martin R., Ebenesersdóttir, S. Sunna, Moore, Kristjan H. S., Petersén, Anna, Vågene, Åshild J., Bieker, Vanessa C., Denham, Sean D., Cavalleri, Gianpiero L., Gilbert, Edmund, Werge, Thomas, Hansen, Thomas F., Kockum, Ingrid, Alfredsson, Lars, Olsson, Tomas, Hovig, Eivind, Gilbert, M. Thomas P., Stefánsson, Kári, Stenøien, Hans K., Helgason, Agnar, and Martin, Michael D.
- Abstract
The potential of ancient DNA analyses to provide independent sources of information about events in the historical record remains to be demonstrated. Here we apply palaeogenomic analysis to human remains excavated from a medieval well at the ruins of Sverresborg Castle in central Norway. In Sverris Saga, the Old Norse saga of King Sverre Sigurdsson, one passage details a 1197-CE raid on the castle and mentions a dead man thrown into the well. Radiocarbon dating supports that these are that individual’s remains. We sequenced the Well-man’s nuclear genome to 3.4× and compared it to Scandinavian populations, revealing he was closely related to inhabitants of southern Norway. This was surprising because King Sverre’s defeated army was assumed to be recruited from parts of central Norway, whereas the raiders were from the south. The findings also indicate that the unique genetic drift seen in present-day southern Norwegians already existed 800 years ago., The potential of ancient DNA analyses to provide independent sources of information about events in the historical record remains to be demonstrated. Here we apply palaeogenomic analysis to human remains excavated from a medieval well at the ruins of Sverresborg castle in central Norway. In Sverris Saga, the Old Norse saga of King Sverre Sigurdsson, one passage details a 1197-CE raid on the castle and mentions a dead man thrown into the well. Radiocarbon dating supports that these are that individual's remains. We sequenced the Well-man's nuclear genome to 3.4× and compared it to Scandinavian populations, revealing he was closely related to inhabitants of southern Norway. This was surprising because King Sverre's defeated army was assumed to be recruited from parts of central Norway, whereas the raiders were from the south. The findings also indicate that the unique genetic drift seen in present-day southern Norwegians already existed 800 years ago.
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- 2024
5. Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter
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Schablitsky, Julie M., Witt, Kelsey E., Madrigal, Jazmín Ramos, Ellegaard, Martin R., Malhi, Ripan S., and Schroeder, Hannes
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- 2019
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6. Corrigendum to “Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter” [J. Archaeol. Sci. 105 (2019) 11–18]
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Schablitsky, Julie M., primary, Witt, Kelsey E., additional, Madrigal, Jazmín Ramos, additional, Ellegaard, Martin R., additional, Malhi, Ripan S., additional, and Schroeder, Hannes, additional
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- 2023
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7. A 5700 year-old human genome and oral microbiome from chewed birch pitch
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Jensen, Theis Z. T., Niemann, Jonas, Iversen, Katrine Højholt, Fotakis, Anna K., Gopalakrishnan, Shyam, Vågene, Åshild J., Pedersen, Mikkel Winther, Sinding, Mikkel-Holger S., Ellegaard, Martin R., Allentoft, Morten E., Lanigan, Liam T., Taurozzi, Alberto J., Nielsen, Sofie Holtsmark, Dee, Michael W., Mortensen, Martin N., Christensen, Mads C., Sørensen, Søren A., Collins, Matthew J., Gilbert, M. Thomas P., Sikora, Martin, Rasmussen, Simon, and Schroeder, Hannes
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- 2019
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8. A palaeogenomic investigation of overharvest implications in an endemic wild reindeer subspecies.
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Kellner, Fabian L., Le Moullec, Mathilde, Ellegaard, Martin R., Rosvold, Jørgen, Peeters, Bart, Burnett, Hamish A., Pedersen, Åshild Ønvik, Brealey, Jaelle C., Dussex, Nicolas, Bieker, Vanessa C., Hansen, Brage B., and Martin, Michael D.
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GENETIC drift ,WILDLIFE conservation ,WHOLE genome sequencing ,GENETIC variation ,SHOTGUN sequencing ,REPRODUCTIVE isolation ,REINDEER - Abstract
Overharvest can severely reduce the abundance and distribution of a species and thereby impact its genetic diversity and threaten its future viability. Overharvest remains an ongoing issue for Arctic mammals, which due to climate change now also confront one of the fastest changing environments on Earth. The high‐arctic Svalbard reindeer (Rangifer tarandus platyrhynchus), endemic to Svalbard, experienced a harvest‐induced demographic bottleneck that occurred during the 17–20th centuries. Here, we investigate changes in genetic diversity, population structure, and gene‐specific differentiation during and after this overharvesting event. Using whole‐genome shotgun sequencing, we generated the first ancient and historical nuclear (n = 11) and mitochondrial (n = 18) genomes from Svalbard reindeer (up to 4000 BP) and integrated these data with a large collection of modern genome sequences (n = 90) to infer temporal changes. We show that hunting resulted in major genetic changes and restructuring in reindeer populations. Near‐extirpation followed by pronounced genetic drift has altered the allele frequencies of important genes contributing to diverse biological functions. Median heterozygosity was reduced by 26%, while the mitochondrial genetic diversity was reduced only to a limited extent, likely due to already low pre‐harvest diversity and a complex post‐harvest recolonization process. Such genomic erosion and genetic isolation of populations due to past anthropogenic disturbance will likely play a major role in metapopulation dynamics (i.e., extirpation, recolonization) under further climate change. Our results from a high‐arctic case study therefore emphasize the need to understand the long‐term interplay of past, current, and future stressors in wildlife conservation. [ABSTRACT FROM AUTHOR]
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- 2024
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9. DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites
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Lynggaard, Christina, primary, Yu, Douglas W., additional, Oliveira, Guilherme, additional, Caldeira, Cecilio F., additional, Ramos, Silvio J., additional, Ellegaard, Martin R., additional, Gilbert, M. Thomas P., additional, Gastauer, Markus, additional, and Bohmann, Kristine, additional
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- 2020
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10. DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites
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Lynggaard, Christina, Yu, Douglas W., Oliveira, Guilherme, Caldeira, Cecilio F., Ramos, Silvio J., Ellegaard, Martin R., Gilbert, M. Thomas P., Gastauer, Markus, Bohmann, Kristine, Lynggaard, Christina, Yu, Douglas W., Oliveira, Guilherme, Caldeira, Cecilio F., Ramos, Silvio J., Ellegaard, Martin R., Gilbert, M. Thomas P., Gastauer, Markus, and Bohmann, Kristine
- Abstract
Human activities change natural landscapes, and in doing so endanger biodiversity and associated ecosystem services. To reduce the net impacts of these activities, such as mining, disturbed areas are rehabilitated and restored. During this process, monitoring is important to ensure that desired trajectories are maintained. In the Carajas region of the Brazilian Amazon, exploration for iron ores has transformed the original ecosystem; natural forest and a savanna formation with lateritic iron duricrust outcrops named canga. Here, native vegetation is logged and topsoil removed and deposited in waste piles along with mine waste. During rehabilitation, these waste piles are hydroseeded with non-native plant species to achieve rapid revegetation. Further, seeds of native canga and forest plant species are planted to point ecological succession towards natural ecosystems. In this study, we investigate diversity and composition of the arthropod community along a post-mining rehabilitation and restoration gradient, taking seasonality and primer bias into account. We use DNA metabarcoding of bulk arthropod samples collected in both the dry and rainy seasons from waste-pile benches at various stages of revegetation: non-revegetated exposed soils, initial stage with one-to-three-year-old stands, intermediate stage with four-to-five-year-old stands, and advanced stage with six-to-seven-year-old stands. We use samples from undisturbed cangas and forests as reference sites. In addition, we vegetation diversity and structure were measured to investigate relations between arthropod community and vegetation structure. Our results show that, over time, the arthropod community composition of the waste piles becomes more similar to the reference forests, but not to the reference cangas. Nevertheless, even the communities in the advanced-stage waste piles are different from the reference forests, and full restoration in these highly diverse ecosystems is not achieved, even after 6 t
- Published
- 2020
11. Correction to: High-coverage genomes to elucidate the evolution of penguins
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Pan, Hailin, primary, Cole, Theresa L, primary, Bi, Xupeng, primary, Fang, Miaoquan, primary, Zhou, Chengran, primary, Yang, Zhengtao, primary, Ksepka, Daniel T, primary, Hart, Tom, primary, Bouzat, Juan L, primary, Argilla, Lisa S, primary, Bertelsen, Mads F, primary, Boersma, P Dee, primary, Bost, Charles-Andre, primary, Cherel, Yves, primary, Dann, Peter, primary, Fiddaman, Steven R, primary, Howard, Pauline, primary, Labuschagne, Kim, primary, Mattern, Thomas, primary, Miller, Gary, primary, Parker, Patricia, primary, Phillips, Richard A, primary, Quillfeldt, Petra, primary, Ryan, Peter G, primary, Taylor, Helen, primary, Thompson, David R, primary, Young, Melanie J, primary, Ellegaard, Martin R, primary, Gilbert, M Thomas P, primary, Sinding, Mikkel-Holger S, primary, Pacheco, George, primary, Shepherd, Lara D, primary, Tennyson, Alan J D, primary, Grosser, Stefanie, primary, Kay, Emily, primary, Nupen, Lisa J, primary, Ellenberg, Ursula, primary, Houston, David M, primary, Reeve, Andrew Hart, primary, Johnson, Kathryn, primary, Masello, Juan F, primary, Stracke, Thomas, primary, McKinlay, Bruce, primary, Garc´ıa Borboroglu, Pablo, primary, Zhang, De-Xing, primary, and Zhang, Guojie, primary
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- 2020
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12. High-coverage genomes to elucidate the evolution of penguins
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Pan, Hailin, primary, Cole, Theresa L, primary, Bi, Xupeng, primary, Fang, Miaoquan, primary, Zhou, Chengran, primary, Yang, Zhengtao, primary, Ksepka, Daniel T, primary, Hart, Tom, primary, Bouzat, Juan L, primary, Argilla, Lisa S, primary, Bertelsen, Mads F, primary, Boersma, P Dee, primary, Bost, Charles-André, primary, Cherel, Yves, primary, Dann, Peter, primary, Fiddaman, Steven R, primary, Howard, Pauline, primary, Labuschagne, Kim, primary, Mattern, Thomas, primary, Miller, Gary, primary, Parker, Patricia, primary, Phillips, Richard A, primary, Quillfeldt, Petra, primary, Ryan, Peter G, primary, Taylor, Helen, primary, Thompson, David R, primary, Young, Melanie J, primary, Ellegaard, Martin R, primary, Gilbert, M Thomas P, primary, Sinding, Mikkel-Holger S, primary, Pacheco, George, primary, Shepherd, Lara D, primary, Tennyson, Alan J D, primary, Grosser, Stefanie, primary, Kay, Emily, primary, Nupen, Lisa J, primary, Ellenberg, Ursula, primary, Houston, David M, primary, Reeve, Andrew Hart, primary, Johnson, Kathryn, primary, Masello, Juan F, primary, Stracke, Thomas, primary, McKinlay, Bruce, primary, Borboroglu, Pablo García, primary, Zhang, De-Xing, primary, and Zhang, Guojie, primary
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- 2019
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13. High-coverage genomes to elucidate the evolution of penguins
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Pan, Hailin, Cole, Theresa L., Bi, Xupeng, Fang, Miaoquan, Zhou, Chengran, Yang, Zhengtao, Hart, Tom, Bouzat, Juan L., Argilla, Lisa S., Bertelsen, Mads F., Boersma, P. Dee, Bost, Charles-André, Cherel, Yves, Dann, Peter, Fiddaman, Steven R., Howard, Pauline, Labuschagne, Kim, Mattern, Thomas, Miller, Gary, Parker, Patricia, Phillips, Richard A., Quillfeldt, Petra, Ryan, Peter G., Taylor, Helen, Thompson, David R., Young, Melanie J., Ellegaard, Martin R., Gilbert, M. Thomas P., Mikkel-Holger, S. Sinding, Pacheco, George, Shepherd, Lara D., Tennyson, Alan J.D., Grosser, Stefanie, Kay, Emily, Nupen, Lisa j., Ellenberg, Ursula, Houston, David M., Reeve, Andrew Hart, Johnson, Kathryn, Masello, Juan F., Stracke, Thomas, McKinlay, Bruce, Zhang, De Xing, Zhang, Guojie, Pan, Hailin, Cole, Theresa L., Bi, Xupeng, Fang, Miaoquan, Zhou, Chengran, Yang, Zhengtao, Hart, Tom, Bouzat, Juan L., Argilla, Lisa S., Bertelsen, Mads F., Boersma, P. Dee, Bost, Charles-André, Cherel, Yves, Dann, Peter, Fiddaman, Steven R., Howard, Pauline, Labuschagne, Kim, Mattern, Thomas, Miller, Gary, Parker, Patricia, Phillips, Richard A., Quillfeldt, Petra, Ryan, Peter G., Taylor, Helen, Thompson, David R., Young, Melanie J., Ellegaard, Martin R., Gilbert, M. Thomas P., Mikkel-Holger, S. Sinding, Pacheco, George, Shepherd, Lara D., Tennyson, Alan J.D., Grosser, Stefanie, Kay, Emily, Nupen, Lisa j., Ellenberg, Ursula, Houston, David M., Reeve, Andrew Hart, Johnson, Kathryn, Masello, Juan F., Stracke, Thomas, McKinlay, Bruce, Zhang, De Xing, and Zhang, Guojie
- Abstract
Penguins (Sphenisciformes) are a remarkable order of flightless wing-propelled diving seabirds distributed widely across the southern hemisphere. They share a volant common ancestor with Procellariiformes close to the Cretaceous-Paleogene boundary (66 million years ago) and subsequently lost the ability to fly but enhanced their diving capabilities. With ∼20 species among 6 genera, penguins range from the tropical Galápagos Islands to the oceanic temperate forests of New Zealand, the rocky coastlines of the sub-Antarctic islands, and the sea ice around Antarctica. To inhabit such diverse and extreme environments, penguins evolved many physiological and morphological adaptations. However, they are also highly sensitive to climate change. Therefore, penguins provide an exciting target system for understanding the evolutionary processes of speciation, adaptation, and demography. Genomic data are an emerging resource for addressing questions about such processes.
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- 2019
14. A 5700 year-old human genome and oral microbiome from chewed birch pitch
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Jensen, Theis Z.T., Niemann, Jonas, Iversen, Katrine Højholt, Fotakis, Anna K., Gopalakrishnan, Shyam, Vågene, Åshild J., Pedersen, Mikkel Winther, Sinding, Mikkel Holger S., Ellegaard, Martin R., Allentoft, Morten E., Lanigan, Liam T., Taurozzi, Alberto J., Nielsen, Sofie Holtsmark, Dee, Michael W., Mortensen, Martin N., Christensen, Mads C., Sørensen, Søren A., Collins, Matthew J., Gilbert, M. Thomas P., Sikora, Martin, Rasmussen, Simon, Schroeder, Hannes, Jensen, Theis Z.T., Niemann, Jonas, Iversen, Katrine Højholt, Fotakis, Anna K., Gopalakrishnan, Shyam, Vågene, Åshild J., Pedersen, Mikkel Winther, Sinding, Mikkel Holger S., Ellegaard, Martin R., Allentoft, Morten E., Lanigan, Liam T., Taurozzi, Alberto J., Nielsen, Sofie Holtsmark, Dee, Michael W., Mortensen, Martin N., Christensen, Mads C., Sørensen, Søren A., Collins, Matthew J., Gilbert, M. Thomas P., Sikora, Martin, Rasmussen, Simon, and Schroeder, Hannes
- Abstract
The rise of ancient genomics has revolutionised our understanding of human prehistory but this work depends on the availability of suitable samples. Here we present a complete ancient human genome and oral microbiome sequenced from a 5700 year-old piece of chewed birch pitch from Denmark. We sequence the human genome to an average depth of 2.3× and find that the individual who chewed the pitch was female and that she was genetically more closely related to western hunter-gatherers from mainland Europe than hunter-gatherers from central Scandinavia. We also find that she likely had dark skin, dark brown hair and blue eyes. In addition, we identify DNA fragments from several bacterial and viral taxa, including Epstein-Barr virus, as well as animal and plant DNA, which may have derived from a recent meal. The results highlight the potential of chewed birch pitch as a source of ancient DNA.
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- 2019
15. Stone Age "chewing gum" yields 5,700 year-old human genome and oral microbiome
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Jensen, Theis ZT, primary, Niemann, Jonas, additional, Hoejholt Iversen, Katrine, additional, Fotakis, Anna K, additional, Gopalakrishnan, Shyam, additional, Sinding, Mikkel HS, additional, Ellegaard, Martin R, additional, Allentoft, Morten E, additional, Lanigan, Liam T, additional, Taurozzi, Alberto J, additional, Holtsmark Nielsen, Sofie, additional, Dee, Michael W, additional, Mortensen, Martin N, additional, Christensen, Mads C, additional, Soerensen, Soeren A, additional, Collins, Matthew J, additional, Gilbert, Tom, additional, Sikora, Martin, additional, Rasmussen, Simon, additional, and Schroeder, Hannes, additional
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- 2018
- Full Text
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16. Ancient DNA Analysis of Nineteenth Century Pipe Stems Recovered from a Maryland Slave Quarter
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Witt, Kelsey E., Schablitsky, Julie M., Madrigal, Jazmin Ramos, Ellegaard, Martin R., Schroeder, Hannes, Malhi, Ripan S., Witt, Kelsey E., Schablitsky, Julie M., Madrigal, Jazmin Ramos, Ellegaard, Martin R., Schroeder, Hannes, and Malhi, Ripan S.
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- 2018
17. High-coverage genomes to elucidate the evolution of penguins
- Author
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Pan, Hailin, Cole, Theresa L, Bi, Xupeng, Fang, Miaoquan, Zhou, Chengran, Yang, Zhengtao, Ksepka, Daniel T, Hart, Tom, Bouzat, Juan L, Argilla, Lisa S, Bertelsen, Mads F, Boersma, P Dee, Bost, Charles-André, Cherel, Yves, Dann, Peter, Fiddaman, Steven R, Howard, Pauline, Labuschagne, Kim, Mattern, Thomas, Miller, Gary, Parker, Patricia, Phillips, Richard A, Quillfeldt, Petra, Ryan, Peter G, Taylor, Helen, Thompson, David R, Young, Melanie J, Ellegaard, Martin R, Gilbert, M Thomas P, Sinding, Mikkel-Holger S, Pacheco, George, Shepherd, Lara D, Tennyson, Alan J D, Grosser, Stefanie, Kay, Emily, Nupen, Lisa J, Ellenberg, Ursula, Houston, David M, Reeve, Andrew Hart, Johnson, Kathryn, Masello, Juan F, Stracke, Thomas, McKinlay, Bruce, Borboroglu, Pablo García, Zhang, De-Xing, Zhang, Guojie, and Justus Liebig University Giessen
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phylogenetics ,demography ,climate change ,comparative evolution ,speciation ,evolution ,genomics ,Antarctica ,14. Life underwater ,ddc:570 ,15. Life on land ,Sphenisciformes ,biogeography - Abstract
Background: Penguins (Sphenisciformes) are a remarkable order of flightless wing-propelled diving seabirds distributed widely across the southern hemisphere. They share a volant common ancestor with Procellariiformes close to the Cretaceous-Paleogene boundary (66 million years ago) and subsequently lost the ability to fly but enhanced their diving capabilities. With ∼20 species among 6 genera, penguins range from the tropical Galápagos Islands to the oceanic temperate forests of New Zealand, the rocky coastlines of the sub-Antarctic islands, and the sea ice around Antarctica. To inhabit such diverse and extreme environments, penguins evolved many physiological and morphological adaptations. However, they are also highly sensitive to climate change. Therefore, penguins provide an exciting target system for understanding the evolutionary processes of speciation, adaptation, and demography. Genomic data are an emerging resource for addressing questions about such processes. Results: Here we present a novel dataset of 19 high-coverage genomes that, together with 2 previously published genomes, encompass all extant penguin species. We also present a well-supported phylogeny to clarify the relationships among penguins. In contrast to recent studies, our results demonstrate that the genus Aptenodytes is basal and sister to all other extant penguin genera, providing intriguing new insights into the adaptation of penguins to Antarctica. As such, our dataset provides a novel resource for understanding the evolutionary history of penguins as a clade, as well as the fine-scale relationships of individual penguin lineages. Against this background, we introduce a major consortium of international scientists dedicated to studying these genomes. Moreover, we highlight emerging issues regarding ensuring legal and respectful indigenous consultation, particularly for genomic data originating from New Zealand Taonga species. Conclusions: We believe that our dataset and project will be important for understanding evolution, increasing cultural heritage and guiding the conservation of this iconic southern hemisphere species assemblage.
18. A 5700 year-old human genome and oral microbiome from chewed birch pitch
- Author
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Katrine Højholt Iversen, Martin R. Ellegaard, Michael W. Dee, Simon Rasmussen, Martin Sikora, Åshild J. Vågene, Morten E. Allentoft, Hannes Schroeder, Liam T. Lanigan, Mikkel Winther Pedersen, Søren A. Sørensen, Mads C. Christensen, Alberto J. Taurozzi, Shyam Gopalakrishnan, Sofie Holtsmark Nielsen, M. Thomas P. Gilbert, Mikkel-Holger S. Sinding, Anna K. Fotakis, Jonas Niemann, Martin Mortensen, Matthew J. Collins, Theis Zetner Trolle Jensen, Jensen, Theis ZT [0000-0002-7166-7975], Iversen, Katrine Højholt [0000-0002-7134-7672], Fotakis, Anna K [0000-0002-4585-4662], Gopalakrishnan, Shyam [0000-0002-2004-6810], Pedersen, Mikkel Winther [0000-0002-7291-8887], Sinding, Mikkel-Holger S [0000-0003-1371-219X], Ellegaard, Martin R [0000-0001-5777-091X], Mortensen, Martin N [0000-0002-8914-9463], Gilbert, M Thomas P [0000-0002-5805-7195], Sikora, Martin [0000-0003-2818-8319], Rasmussen, Simon [0000-0001-6323-9041], Schroeder, Hannes [0000-0002-6743-0270], Apollo - University of Cambridge Repository, Jensen, Theis Z. T. [0000-0002-7166-7975], Fotakis, Anna K. [0000-0002-4585-4662], Sinding, Mikkel-Holger S. [0000-0003-1371-219X], Ellegaard, Martin R. [0000-0001-5777-091X], Mortensen, Martin N. [0000-0002-8914-9463], Gilbert, M. Thomas P. [0000-0002-5805-7195], and Isotope Research
- Subjects
0301 basic medicine ,Sex Determination Analysis ,Time Factors ,Population genetics ,Denmark ,DIVERSITY ,General Physics and Astronomy ,631/208/457 ,0302 clinical medicine ,631/208/212/2142 ,DNA sequencing ,lcsh:Science ,EPSTEIN-BARR-VIRUS ,Dark brown hair ,Betula ,Multidisciplinary ,Geography ,Microbiota ,digestive, oral, and skin physiology ,article ,humanities ,READ ALIGNMENT ,ADMIXTURE ,706/689/19/27 ,Phenotype ,Archaeology ,ACCURATE ,Oral Microbiome ,DNA, Bacterial ,NEOLITHIC TRANSITION ,Science ,Zoology ,Genomics ,45/23 ,Biology ,Hafting ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,stomatognathic system ,ANCIENT DNA ,Animals ,Humans ,BRONZE-AGE ,DNA, Ancient ,Mouth ,IDENTIFICATION ,Genome, Human ,Radiometric Dating ,General Chemistry ,631/208/514/1948 ,HUNTER-GATHERERS ,stomatognathic diseases ,030104 developmental biology ,Ancient DNA ,Metagenomics ,lcsh:Q ,Human genome ,030217 neurology & neurosurgery - Abstract
The rise of ancient genomics has revolutionised our understanding of human prehistory but this work depends on the availability of suitable samples. Here we present a complete ancient human genome and oral microbiome sequenced from a 5700 year-old piece of chewed birch pitch from Denmark. We sequence the human genome to an average depth of 2.3× and find that the individual who chewed the pitch was female and that she was genetically more closely related to western hunter-gatherers from mainland Europe than hunter-gatherers from central Scandinavia. We also find that she likely had dark skin, dark brown hair and blue eyes. In addition, we identify DNA fragments from several bacterial and viral taxa, including Epstein-Barr virus, as well as animal and plant DNA, which may have derived from a recent meal. The results highlight the potential of chewed birch pitch as a source of ancient DNA., Birch pitch is thought to have been used in prehistoric times as hafting material or antiseptic and tooth imprints suggest that it was chewed. Here, the authors report a 5,700 year-old piece of chewed birch pitch from Denmark from which they successfully recovered a complete ancient human genome and oral microbiome DNA.
- Published
- 2020
- Full Text
- View/download PDF
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