18 results on '"Ellis, Bethany"'
Search Results
2. Coupling of Indo-Pacific climate variability over the last millennium
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Abram, Nerilie J., Wright, Nicky M., Ellis, Bethany, Dixon, Bronwyn C., Wurtzel, Jennifer B., England, Matthew H., and Ummenhofer, Caroline C.
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Indian Ocean -- Environmental aspects ,Southern oscillation -- Analysis ,Ocean-atmosphere interaction -- Analysis ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
The Indian Ocean Dipole (IOD) affects climate and rainfall across the world, and most severely in nations surrounding the Indian Ocean.sup.1-4. The frequency and intensity of positive IOD events increased during the twentieth century.sup.5 and may continue to intensify in a warming world.sup.6. However, confidence in predictions of future IOD change is limited by known biases in IOD models.sup.7 and the lack of information on natural IOD variability before anthropogenic climate change. Here we use precisely dated and highly resolved coral records from the eastern equatorial Indian Ocean, where the signature of IOD variability is strong and unambiguous, to produce a semi-continuous reconstruction of IOD variability that covers five centuries of the last millennium. Our reconstruction demonstrates that extreme positive IOD events were rare before 1960. However, the most extreme event on record (1997) is not unprecedented, because at least one event that was approximately 27 to 42 per cent larger occurred naturally during the seventeenth century. We further show that a persistent, tight coupling existed between the variability of the IOD and the El Niño/Southern Oscillation during the last millennium. Indo-Pacific coupling was characterized by weak interannual variability before approximately 1590, which probably altered teleconnection patterns, and by anomalously strong variability during the seventeenth century, which was associated with societal upheaval in tropical Asia. A tendency towards clustering of positive IOD events is evident in our reconstruction, which--together with the identification of extreme IOD variability and persistent tropical Indo-Pacific climate coupling--may have implications for improving seasonal and decadal predictions and managing the climate risks of future IOD variability. Coral records indicate that the variability of the Indian Ocean Dipole over the last millennium is strongly coupled to variability in the El Niño/Southern Oscillation and that recent extremes are unusual but not unprecedented., Author(s): Nerilie J. Abram [sup.1] [sup.2] , Nicky M. Wright [sup.1] [sup.2] , Bethany Ellis [sup.1] [sup.3] , Bronwyn C. Dixon [sup.1] [sup.3] [sup.4] , Jennifer B. Wurtzel [sup.1] [sup.15] [...]
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- 2020
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3. Is XRF core scanning a viable method for coral palaeoclimate temperature reconstructions?
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Ellis, Bethany, Grant, Katharine, Mallela, Jennie, and Abram, Nerilie
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- 2019
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4. Author Correction: Coupling of Indo-Pacific climate variability over the last millennium
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Abram, Nerilie J., Wright, Nicky M., Ellis, Bethany, Dixon, Bronwyn C., Wurtzel, Jennifer B., England, Matthew H., Ummenhofer, Caroline C., Philibosian, Belle, Cahyarini, Sri Yudawati, Yu, Tsai-Luen, Shen, Chuan-Chou, Cheng, Hai, Edwards, R. Lawrence, and Heslop, David
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- 2022
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5. The CoralHydro2k database: a global, actively curated compilation of coral δ18O and Sr ∕ Ca proxy records of tropical ocean hydrology and temperature for the Common Era
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Walter, Rachel M., Sayani, Hussein R., Felis, Thomas, Cobb, Kim M., Abram, Nerilie J., Arzey, Ariella K., Atwood, Alyssa R., Brenner, Logan D., Dassié, Émilie P., DeLong, Kristine L., Ellis, Bethany, Emile-Geay, Julien, Fischer, Matthew J., Goodkin, Nathalie F., Hargreaves, Jessica A., Kilbourne, K. Halimeda, Krawczyk, Hedwig, McKay, Nicholas P., Moore, Andrea L., Murty, Sujata A., Ong, Maria Rosabelle, Ramos, Riovie D., Reed, Emma V., Samanta, Dhrubajyoti, Sanchez, Sara C., Zinke, Jens, and the PAGES CoralHydro2k Project Members
- Abstract
The response of the hydrological cycle to anthropogenic climate change, especially across the tropical oceans, remains poorly understood due to the scarcity of long instrumental temperature and hydrological records. Massive shallow-water corals are ideally suited to reconstructing past oceanic variability as they are widely distributed across the tropics, rapidly deposit calcium carbonate skeletons that continuously record ambient environmental conditions, and can be sampled at monthly to annual resolution. Climate reconstructions based on corals primarily use the stable oxygen isotope composition (δ18O), which acts as a proxy for sea surface temperature (SST), and the oxygen isotope composition of seawater (δ18Osw), a measure of hydrological variability. Increasingly, coral δ18O time series are paired with time series of strontium-to-calcium ratios (Sr/Ca), a proxy for SST, from the same coral to quantify temperature and δ18Osw variability through time. To increase the utility of such reconstructions, we present the CoralHydro2k database, a compilation of published, peer-reviewed coral Sr/Ca and δ18O records from the Common Era (CE). The database contains 54 paired Sr/Ca–δ18O records and 125 unpaired Sr/Ca or δ18O records, with 88 % of these records providing data coverage from 1800 CE to the present. A quality-controlled set of metadata with standardized vocabulary and units accompanies each record, informing the use of the database. The CoralHydro2k database tracks large-scale temperature and hydrological variability. As such, it is well-suited for investigations of past climate variability, comparisons with climate model simulations including isotope-enabled models, and application in paleodata-assimilation projects. The CoralHydro2k database is available in Linked Paleo Data (LiPD) format with serializations in MATLAB, R, and Python and can be downloaded from the NOAA National Center for Environmental Information's Paleoclimate Data Archive at https://doi.org/10.25921/yp94-v135 (Walter et al., 2022).
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- 2023
6. The CoralHydro2k Database: a global, actively curated compilation of coral δ18O and Sr / Ca proxy records of tropical ocean hydrology and temperature for the Common Era
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Walter, Rachel M., Sayani, Hussein R., Felis, Thomas, Cobb, Kim M., Abram, Nerilie J., Arzey, Ariella K., Atwood, Alyssa R., Brenner, Logan D., Dassié, Émilie P., DeLong, Kristine L., Ellis, Bethany, Fischer, Matthew J., Goodkin, Nathalie F., Hargreaves, Jessica A., Kilbourne, K. Halimeda, Krawczyk, Hedwig, McKay, Nicholas P., Murty, Sujata A., Ramos, Riovie D., Reed, Emma V., Samanta, Dhrubajyoti, Sanchez, Sara C., Zinke, Jens, and the PAGES CoralHydro2k Project Members
- Abstract
The response of the hydrological cycle to anthropogenic climate change, especially across the tropical oceans, remains poorly understood due to the scarcity of long instrumental temperature and hydrological records. Massive shallow-water corals are ideally suited to reconstructing past oceanic variability as they are widely distributed across the tropics, rapidly deposit calcium carbonate skeletons that continuously record ambient environmental conditions, and can be sampled at monthly to annual resolution. Most coral-based reconstructions utilize stable oxygen isotope composition (δ18O) that tracks the combined change in sea surface temperature (SST) and the oxygen isotopic composition of seawater (δ18Osw), a measure of hydrologic variability. Increasingly, coral δ18O time series are paired with time series of strontium-to-calcium ratios (Sr / Ca), a proxy for SST, from the same coral to quantify temperature and δ18Osw variability through time. To increase the utility of such reconstructions, we present the CoralHydro2k database: a compilation of published, peer-reviewed coral Sr / Ca and δ18O records from the Common Era. The database contains 54 paired Sr / Ca-δ18O records and 125 unpaired Sr / Ca or δ18O records, with 88 % of these records providing data coverage from 1800 CE to present. A quality-controlled set of metadata with standardized vocabulary and units accompanies each record, informing the use of the database. The CoralHydro2k database tracks large-scale temperature and hydrological variability. As such, it is well-suited for investigations of past climate variability, comparisons with climate model simulations including isotope-enabled models – and application in paleo-data assimilation projects.The CoralHydro2k database will be available on the NOAA National Center for Environmental Information’s Paleoclimate data service with serializations in MATLAB, R, Python, and LiPD.
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- 2022
7. The CoralHydro2k database: a global, actively curated compilation of coral δ18O and Sr / Ca proxy records of tropical ocean hydrology and temperature for the Common Era.
- Author
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Walter, Rachel M., Sayani, Hussein R., Felis, Thomas, Cobb, Kim M., Abram, Nerilie J., Arzey, Ariella K., Atwood, Alyssa R., Brenner, Logan D., Dassié, Émilie P., DeLong, Kristine L., Ellis, Bethany, Emile-Geay, Julien, Fischer, Matthew J., Goodkin, Nathalie F., Hargreaves, Jessica A., Kilbourne, K. Halimeda, Krawczyk, Hedwig, McKay, Nicholas P., Moore, Andrea L., and Murty, Sujata A.
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DATABASES ,OCEAN temperature ,EFFECT of human beings on climate change ,CORALS ,DATA libraries - Abstract
The response of the hydrological cycle to anthropogenic climate change, especially across the tropical oceans, remains poorly understood due to the scarcity of long instrumental temperature and hydrological records. Massive shallow-water corals are ideally suited to reconstructing past oceanic variability as they are widely distributed across the tropics, rapidly deposit calcium carbonate skeletons that continuously record ambient environmental conditions, and can be sampled at monthly to annual resolution. Climate reconstructions based on corals primarily use the stable oxygen isotope composition (δ18 O), which acts as a proxy for sea surface temperature (SST), and the oxygen isotope composition of seawater (δ18 O sw), a measure of hydrological variability. Increasingly, coral δ18 O time series are paired with time series of strontium-to-calcium ratios (Sr/Ca), a proxy for SST, from the same coral to quantify temperature and δ18 O sw variability through time. To increase the utility of such reconstructions, we present the CoralHydro2k database, a compilation of published, peer-reviewed coral Sr/Ca and δ18 O records from the Common Era (CE). The database contains 54 paired Sr/Ca – δ18 O records and 125 unpaired Sr/Ca or δ18 O records, with 88 % of these records providing data coverage from 1800 CE to the present. A quality-controlled set of metadata with standardized vocabulary and units accompanies each record, informing the use of the database. The CoralHydro2k database tracks large-scale temperature and hydrological variability. As such, it is well-suited for investigations of past climate variability, comparisons with climate model simulations including isotope-enabled models, and application in paleodata-assimilation projects. The CoralHydro2k database is available in Linked Paleo Data (LiPD) format with serializations in MATLAB, R, and Python and can be downloaded from the NOAA National Center for Environmental Information's Paleoclimate Data Archive at 10.25921/yp94-v135 (Walter et al., 2022). [ABSTRACT FROM AUTHOR]
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- 2023
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8. An Early Tweet Catches the Worm - Twitter Trends in #Parasitology
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Ellis, John, primary, Ellis, Bethany, additional, and Reichel, Michael, additional
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- 2022
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9. A new subspecies of Trypanosoma cyclops found in the Australian terrestrial leech Chtonobdella bilineata
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Ellis, Bethany, Ellis, John, Barratt, Joel, Kaufer, Alexa, Pearn, Lauren, Armstrong, Brigette, Johnson, Michael, Park, Yasunori, Downey, Lara, Cao, Maisie, Ellis, Bethany, Ellis, John, Barratt, Joel, Kaufer, Alexa, Pearn, Lauren, Armstrong, Brigette, Johnson, Michael, Park, Yasunori, Downey, Lara, and Cao, Maisie
- Abstract
Previously it was suggested that haemadipsid leeches represent an important vector of trypanosomes amongst native animals in Australia. Consequently, Chtonobdella bilineata leeches were investigated for the presence of trypanosome species by PCR, DNA sequencing, and in vitro isolation. Phylogenetic analysis ensued to further define the populations present. PCR targeting the 28S rDNA demonstrated that over 95% of C. bilineata contained trypanosomes; diversity profiling by deep amplicon sequencing of 18S rDNA indicated the presence of four different clusters related to the Trypanosoma (Megatrypanum) theileri. Novy-MacNeal-Nicolle (NNN) slopes with liquid overlay were used to isolate trypanosomes into culture that proved similar in morphology to Trypanosoma cyclops in that they contained a large numbers of acidocalcisomes. Phylogeny of 18S rDNA/GAPDH/ND5 DNA sequences from primary cultures and subclones showed the trypanosomes were monophyletic, with T. cyclops as a sister group. Blood meal analysis of leeches showed thatleeches primarily contained blood from Swamp Wallaby (Wallabia bicolour), human (Homo sapiens) or horse (Equus sp.). The leech C. bilineata is a host for at least five lineages of Trypanosoma sp. and these are monophyletic with T. cyclops; we propose Trypanosoma cyclops australiensis as a subspecies of T. cyclops based on genetic similarity and biogeography considerations.
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- 2021
10. A new subspecies of Trypanosoma cyclops found in the Australian terrestrial leech Chtonobdella bilineata
- Author
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Ellis, John, primary, Barratt, Joel, additional, Kaufer, Alexa, additional, Pearn, Lauren, additional, Armstrong, Brigette, additional, Johnson, Michael, additional, Park, Yasunori, additional, Downey, Lara, additional, Cao, Maisie, additional, Neill, Levina, additional, Lee, Rogan, additional, Ellis, Bethany, additional, Tyler, Kevin, additional, Lun, Zhao-Rong, additional, and Stark, Damien, additional
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- 2021
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11. 30 years of parasitology research analysed by text mining
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Ellis, John T., primary, Ellis, Bethany, additional, Velez-Estevez, Antonio, additional, Reichel, Michael P., additional, and Cobo, Manuel J., additional
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- 2020
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12. Marine biomarkers from ice cores reveal enhanced high-latitude Southern Ocean carbon sink during the Antarctic Cold Reversal
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Rivera, Andres, Ramsey, Christopher, Bird, Michael, Bagshaw, Elizabeth, Ellis, Bethany, Millman, Helen, Love, John, Weyrich, Laura, Power, Ann, Munksgaard, Niels, Cooper, Alan, Fogwill, Christopher, Rainsley, Eleanor, Hall, Ian, Rootes, Camilla, Moy, Andrew, Davies, Siwan, Vohra, Juee, Turney, Chris, Golledge, Nick, Pike, Jennifer, Menviel, Laurie, Rubino, Mauro, Weber, Michael, Curran, Mark, Etheridge, David, Harris, Matthew, Mackintosh, Andrew, Cage, Alix, Young, Jennifer, van Ommen, Tas, Thornton, David, Thomas, Zoë, Montenari, Michael, and Baker, Andy
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bepress|Physical Sciences and Mathematics ,bepress|Physical Sciences and Mathematics|Earth Sciences|Paleontology ,bepress|Physical Sciences and Mathematics|Earth Sciences|Glaciology ,EarthArXiv|Physical Sciences and Mathematics|Earth Sciences|Biogeochemistry ,bepress|Physical Sciences and Mathematics|Earth Sciences ,EarthArXiv|Physical Sciences and Mathematics|Earth Sciences|Glaciology ,EarthArXiv|Physical Sciences and Mathematics|Earth Sciences ,bepress|Physical Sciences and Mathematics|Earth Sciences|Biogeochemistry ,EarthArXiv|Physical Sciences and Mathematics|Earth Sciences|Paleontology ,EarthArXiv|Physical Sciences and Mathematics - Abstract
Determining the feedbacks that modulate Southern Ocean carbon dynamics is key to understanding past and future climate. The global pause in rising atmospheric CO2 during the period of mid- to high-latitude southern surface cooling known as the Antarctic Cold Reversal (ACR, 14,700-12,700 years ago) provides an opportunity to disentangle competing influences. We present highly-resolved and precisely-aligned ice and marine reconstructions that capture a previously unrecognized increase in microbial diversity and ocean primary productivity during the ACR. Transient climate modeling across the last glacial suggests this period corresponds to a maximum seasonal difference in sea-ice extent. Our results indicate that this increased seasonal sea-ice variability drove changes in high-latitude light, temperature and nutrient availability, turning the southern seasonal sea-ice zone into a globally significant carbon sink.
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- 2019
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13. 30 years of parasitology research analysed by text mining
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Ellis, John Timothy, Ellis, Bethany, Velez-Estevez, Antonio, Reichel, Michael P, Cobo, Manuel J, Ellis, John Timothy, Ellis, Bethany, Velez-Estevez, Antonio, Reichel, Michael P, and Cobo, Manuel J
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Bibliometric methods were used to analyse the major research trends, themes and topics over the last 30 years in the parasitology discipline. The tools used were SciMAT, VOSviewer and SWIFT-Review in conjunction with the parasitology literature contained in the MEDLINE, Web of Science, Scopus and Dimensions databases. The analyses show that the major research themes are dynamic and continually changing with time, although some themes identified based on keywords such as malaria, nematode, epidemiology and phylogeny are consistently referenced over time. We note the major impact of countries like Brazil has had on the literature of parasitology research. The increase in recent times of research productivity on 'antiparasitics' is discussed, as well as the change in emphasis on different antiparasitic drugs and insecticides over time. In summary, innovation in parasitology is global, extensive, multidisciplinary, constantly evolving and closely aligned with the availability of technology.
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- 2020
14. Marine biomarkers from ice cores reveal enhanced high-latitude Southern Ocean carbon sink during the Antarctic Cold Reversal
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Fogwill, Christopher, primary, Turney, Chris, additional, Menviel, Laurie, additional, Baker, Andy, additional, Weber, Michael, additional, Ellis, Bethany, additional, Thomas, Zoë, additional, Golledge, Nick, additional, Etheridge, David, additional, and Rubino, Mauro, additional
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- 2019
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15. Tryptophan fluorescence in snow as a potential proxy for Antarctic Bottom Water production in the Weddell Sea, Antarctica.
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Harris, Matthew, Turney, Chris, Fogwill, Chris, Baker, Andy, Ellis, Bethany, Power, Ann, Love, John, Rubino, Mauro, Fernandoy, Francisco, Thornton, David, and Munksgaard, Niels
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- 2019
16. Biomarkers reveal that high-latitude Southern Ocean carbon sink enhanced by seasonal sea-ice feedbacks during the Antarctic Cold Reversal.
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Fogwill, Christopher, Turney, Chris, Menviel, Laurie, Baker, Andy, Weber, Mike, Ellis, Bethany, Thomas, Zoë, Golledge, Nick, Etheridge, David, Rubino, Mauro, Davies, Siwan, van Ommen, Tas, Rainsley, Eleanor, Munksgaard, Neils, Bird, Michael, Pike, Jenifer, Love, John, Power, Ann, Weyrich, Laura, and Cooper, Alan
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- 2019
17. Biomarker analysis of a snow core from Patriot Hills, Antarctica provides evidence for twentieth-century deep convection activity and ocean-climate interactions in the Weddell Sea Embayment.
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Harris, Matthew, Turney, Chris, Fogwill, Chris, Baker, Andy, Ellis, Bethany, Cooper, Alan, Etheridge, David, Rubino, Mauro, Thornton, David, Fernandoy, Francisco, Bird, Michael, and Munksgaard, Niels
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- 2018
18. Polygenic scores for intelligence, educational attainment and schizophrenia are differentially associated with core autism features, IQ, and adaptive behaviour in autistic individuals
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Warrier, Varun, Leblond, Claire, Cliquet, Freddy, Leap, Aims-2-Trials, Bourgeron, Thomas, Baron-Cohen, Simon, University of Cambridge [UK] (CAM), Génétique humaine et fonctions cognitives - Human Genetics and Cognitive Functions (GHFC (UMR_3571 / U-Pasteur_1)), Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]-Université de Paris (UP), V.W. is funded by St. Catharines College, Cambridge. This study was funded by grants to SBC from the Medical Research Council, the Wellcome Trust, the Autism Research Trust, the Templeton World Charity Foundation, and to T.B. from the Institut Pasteur, the CNRS, The Bettencourt-Schueller and the Cognacq-Jay Foundations, the APHP and the Universite de Paris. SBC was funded by the Autism Research Trust, the Wellcome Trust, the Templeton World Charitable Foundation, and the NIHR Biomedical Research Centre in Cambridge, during the period of this work., List of authors and their affiliations for the EU-AIMS LEAP group : KCL: Dr Antonia San Jose Caceres, Hannah Hayward, Daisy Crawley, Jessica Faulkner, Jessica Sabet, Claire Ellis, Bethany Oakley, Dr. Eva Loth, Prof. Tony Charman, Prof. Declan Murphy, University of Cambridge: Dr. Rosemary Holt , Jack Waldman, Jessica Upadhyay, Nicola Gunby, Dr. Meng-Chuan Lai, Gwilym Renouf, Dr. Amber Ruigrok, Emily Taylor, Dr. Hisham Ziauddeen, Dr. Julia Deakin, Professor Simon Baron-Cohen, UMC Utrecht: Sara Ambrosino di Bruttopilo, Sarai van Dijk, Yvonne Rijks, Tabitha Koops, Miriam Douma, Alyssia Spaan, Iris Selten, Maarten Steffers, Anna Ver Loren van Themaat, Central Institute of Mental Health Mannheim: Dr. Nico Bast, Dr. Sarah Baumeister, Radboudumc: Dr Larry O’Dwyer, Carsten Bours, Annika Rausch Dr. Daniel von Rhein, Ineke Cornelissen, Yvette de Bruin, Maartje Graauwmans, Karolinska Institutet: Elzbieta Kostrzewa, Elodie Cauvet, Dr. Kristiina Tammimies, Rouslan Sitnikow, Institut Pasteur: Dr. Guillaume Dumas, Dr. Yang-Min Kim, and Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
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[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] - Abstract
Posté sur medRxiv le 24 juillet 2020.; ImportanceSchizophrenia, educational attainment, and intelligence are all genetically correlated with autism. However, autism is a complex condition, with several different core (such as social communication difficulties and repetitive and restricted behaviour) and associated features (such as IQ and adaptive behaviour) contributing to the underlying heterogeneity. It is unknown to what extent polygenic scores (PGS) for these three phenotypes are associated with the core and associated autism features.ObjectiveTo investigate the association of PGS for intelligence, educational attainment and schizophrenia on core autism features, IQ and adaptive behaviour in autistic individuals. To further investigate the effects of stratifying by sex and IQ on these associations.DesignPGS association for the three phenotypes with 12 different autism core and associated features in three cohorts followed by meta-analysis. We additionally conducted sensitivity analyses by stratifying for sex and IQ.Settings :Three cross-sectional, multi-centre cohorts comprising autistic with genotype data, and phenotypic information.ParticipantsAutistic individuals (total N: 2,512 – 3,681) from three different cohorts: Simons Simplex Collection (Nmax = 2,233), Autism Genetic Research Exchange (Nmax = 1,200), and AIMS-2- TRIALS LEAP (Nmax = 262)Main outcome measuresAssociation of PGS for intelligence, educational attainment, and schizophrenia with core autism features, measures of intelligence, and adaptive behaviour in autistic individualsResultsWe identified a similar pattern of correlation among core and associated autism features across all three cohorts. Cluster analyses of these features identified two broad clusters – one consisting of the core features, and another consisting of IQ and adaptive behaviour. PGS for intelligence were only associated with measures of intelligence and adaptive behaviour (e.g. for full-scale IQ, Beta = 0.08, 95%CI = 0.11 – 0.04) for PGS for educational attainment were associated for measures of intelligence, adaptive behaviour, and additionally, non-verbal communication as measured by ADI – a core-autism feature (e.g. for full-scale IQ, Beta = 0.05, 95%CI = 0.08 – 0.02; for ADI non-verbal communication, Beta = 0.05, 95%CI = 0.09 – 0.01). Finally, PGS for schizophrenia were associated with two core autism features: restricted and repetitive behaviour and verbal communication difficulties as measured by the ADI-R (e.g. for ADI restricted and repetitive behaviour: Beta = 0.06, 95%CI = 0.09 – 0.02). Most of these associations were also significant when restricting it to males only or to individuals with IQ > 70. We find limited evidence for heterogeneity between cohorts.Conclusion and relevanceWe identify specific and different patterns of association between PGS for the three phenotypes and core and associated autism features. This provides greater resolution into the shared genetics between autism and the three phenotypes, and suggests one method to investigate heterogeneity in autism and co-occurring conditions.
- Published
- 2021
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