129 results on '"Elson DS"'
Search Results
2. A YOLOv5-based network for the detection of a diffuse reflectance spectroscopy probe to aid surgical guidance in gastrointestinal cancer surgery
- Author
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Gkouzionis, I, Zhong, Y, Nazarian, S, Darzi, A, Patel, N, Peters, CJ, and Elson, DS
- Abstract
PURPOSE: A positive circumferential resection margin (CRM) for oesophageal and gastric carcinoma is associated with local recurrence and poorer long-term survival. Diffuse reflectance spectroscopy (DRS) is a non-invasive technology able to distinguish tissue type based on spectral data. The aim of this study was to develop a deep learning-based method for DRS probe detection and tracking to aid classification of tumour and non-tumour gastrointestinal (GI) tissue in real time. METHODS: Data collected from both ex vivo human tissue specimen and sold tissue phantoms were used for the training and retrospective validation of the developed neural network framework. Specifically, a neural network based on the You Only Look Once (YOLO) v5 network was developed to accurately detect and track the tip of the DRS probe on video data acquired during an ex vivo clinical study. RESULTS: Different metrics were used to analyse the performance of the proposed probe detection and tracking framework, such as precision, recall, mAP 0.5, and Euclidean distance. Overall, the developed framework achieved a 93% precision at 23 FPS for probe detection, while the average Euclidean distance error was 4.90 pixels. CONCLUSION: The use of a deep learning approach for markerless DRS probe detection and tracking system could pave the way for real-time classification of GI tissue to aid margin assessment in cancer resection surgery and has potential to be applied in routine surgical practice.
- Published
- 2023
3. PTH-143 Application of gold nanorods for in vivotheranostics of human oesophageal adenocarcinoma
- Author
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Singh, M, Nabavi, E, Zhou, Y, Zhao, H, Ma, D, Cass, AE, Hanna, GB, and Elson, DS
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- 2015
- Full Text
- View/download PDF
4. Guiding light to optimize wide local excisions: the 'GLOW' study
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Kedrzycki, MS, Leiloglou, M, Chalau, V, Lin, J, Thiruchelvam, PTR, Elson, DS, Leff, DR, Imperial College Healthcare NHS Trust- BRC Funding, Cancer Research UK, National Institute for Health Research, and Wellcome Trust
- Subjects
Science & Technology ,Oncology ,Surgery ,1112 Oncology and Carcinogenesis ,Oncology & Carcinogenesis ,Life Sciences & Biomedicine - Published
- 2021
5. Full Poincaré polarimetry enabled through physical inference
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He, C, Chang, J, Lin, J, Antonello, J, Dai, B, Wang, J, Cui, J, Qi, J, Wu, M, Elson, DS, Xi, P, Forbes, A, and Booth, MJ
- Subjects
FOS: Physical sciences ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Optics (physics.optics) - Abstract
While polarization sensing is vital in many areas of research, with applications spanning from microscopy to aerospace, traditional approaches are limited by method-related error amplification, accumulation, and pre-processing steps, constraining the performance of single-shot polarimetry. Here, we propose a measurement paradigm that circumvents these limitations, based on the use of a universal full Poincaré generator to map all polarization analyzer states into a single vectorially structured light field. All vector components are analyzed in a single shot, extracting the vectorial state through inference from a physical model of the resulting image, providing a single-step sensing procedure. To demonstrate the feasibility of our approach, we use a common graded index (GRIN) optic as our mapping device and show mean errors of < 1 % for each vector component. Our work paves the way for next-generation polarimetry, impacting a wide variety of applications that rely on vector measurement.
- Published
- 2021
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6. Augmented intraoperative surgical vision for the assessment of gastrointestinal cancer resection margins
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Waldock, WJ, Avila-Rencoret, FB, Tincknell, LG, Murphy, J, Elson, DS, Peters, CJ, Cancer Research UK, and Imperial College Healthcare NHS Trust- BRC Funding
- Subjects
Science & Technology ,Surgery ,11 Medical And Health Sciences ,Life Sciences & Biomedicine - Published
- 2018
7. Bayes' theorem-based binary algorithm for fast reference-less calibration of a multimode fiber
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Zhao, T, Deng, L, Wang, W, Elson, DS, and Su, L
- Subjects
FOCUSING LIGHT ,Science & Technology ,CRYSTAL ,0205 Optical Physics ,AMPLITUDE ,0906 Electrical And Electronic Engineering ,Optics ,TRANSMISSION MATRIX ,OPTICAL-PHASE CONJUGATION ,DEVICE ,SCATTERING MEDIA ,TURBID MEDIA ,Physical Sciences ,1005 Communications Technologies ,MODULATION ,ENDOSCOPE - Abstract
In this paper, we present a Bayes’ theorem-based high-speed algorithm, to measure the binary transmission matrix of a multimode fiber using a digital micromirror device, in a reference-less multimode fiber imaging system. Based on conditional probability, we define a preset threshold to locate those digital-micromirror-device pixels that can be switched ‘ON’ to form a focused spot at the output. This leads to a binary transmission matrix consisting of ‘0’ and ‘1’ elements. High-enhancement-factor light focusing and raster-scanning at the distal end of the fiber are demonstrated experimentally. The key advantage of our algorithm is its capability for fast calibration of a MMF to form a tightly focused spot. In our experiment, for 5000 input-output pairs, we only need 0.26 s to calibrate one row of the transmission matrix to achieve a focused spot with an enhancement factor of 28. This is more than 10 times faster than the prVBEM algorithm. The proposed Bayes’ theorem-based binary algorithm can be applied not only in multimode optical fiber focusing but also to other disordered media. Particularly, it will be valuable in fast multimode fiber calibration for endoscopic imaging.
- Published
- 2018
8. Raman spectroscopic evidence of tissue restructuring in heat-induced tissue fusion
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Su, L, Cloyd, KL, Arya, S, Hedegaard, MAB, Steele, JAM, Elson, DS, Stevens, MM, Hanna, GB, and Department of Health
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tissue diagnostics ,Biochemistry & Molecular Biology ,Hot Temperature ,Radio Waves ,Swine ,0205 Optical Physics ,Biophysics ,Raman imaging ,DIAGNOSIS ,Spectrum Analysis, Raman ,Biochemical Research Methods ,VIVO ,SMALL-BOWEL ,Intestine, Small ,SPECTRA ,Animals ,Microscopy ,Science & Technology ,0304 Medicinal and Biomolecular Chemistry ,1004 Medical Biotechnology ,Optics ,COLLAGEN ,Optoelectronics & Photonics ,Physical Sciences ,Raman spectroscopy ,tissue fusion ,BONE ,Life Sciences & Biomedicine ,BLOOD-VESSEL CLOSURE ,SEAL - Abstract
Heat-induced tissue fusion via radio-frequency (RF) energy has gained wide acceptance clinically and here we present the first optical-Raman-spectroscopy study on tissue fusion samples in vitro. This study provides direct insights into tissue constituent and structural changes on the molecular level, exposing spectroscopic evidence for the loss of distinct collagen fibre rich tissue layers as well as the denaturing and restructuring of collagen crosslinks post RF fusion. These findings open the door for more advanced optical feedback-control methods and characterization during heat-induced tissue fusion, which will lead to new clinical applications of this promising technology. (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)
- Published
- 2014
- Full Text
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9. Detection and Identification of Multispectral Structured Light Patterns for Minimally Invasive Surgery
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Lin, J, Clancy, NT, Boissonnat, G, Elson, DS, Yang, GZ, and Darzi, A
- Published
- 2013
10. Multispectral Imaging using a Fast Filter Wheel System during Vascular Surgery
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Clancy, NT, Ebner, M, Crane, JS, Corbett, R, Duncan, N, Caro, C, Elson, DS, Yang, GZ, and Darzi, A
- Published
- 2013
11. A snapshot endoscopic polarisation imaging system
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Clancy, NT, Elson, DS, Yang, GZ, and Darzi, A
- Published
- 2012
12. Fluorescence lifetime imaging endoscopy
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Kennedy, GT, Munro, IH, Coda, S, Thompson, AJ, Viellerobe, B, Lacombe, F, Thillainayagam, A, Neil, MAA, Stamp, GW, Elson, DS, Dunsby, CW, French, PMW, Ramanujam, N, Popp, J, Tearney, GJ, Wang, TD, and Engineering & Physical Science Research Council (EPSRC)
- Subjects
Fluorescence microscopy ,Technology ,Microscopy ,Fluorescence-lifetime imaging microscopy ,Science & Technology ,SPECTROSCOPY ,Microscope ,Materials science ,Endoscope ,business.industry ,Confocal ,Scanning microscopy ,Optics ,Laser ,law.invention ,Confocal microscopy ,law ,Physical Sciences ,Fluorescence microscope ,Endoscopic imaging ,business ,MICROSCOPE - Abstract
We present two FLIM endoscopes for clinical imaging and in vivo cell biology. For subcellular confocal imaging we demonstrated the first confocal FLIM endomicroscope, implementing TCSPC with a Cellvizio®GI, which we have now developed as a self-contained wheeled instrument (1.0 × 0.7 m) incorporating a tunable excitation laser and acquiring images in < 10 s. This has been applied to image FRET in live cells and to image tissue autofluorescence, for which we are implementing "FIFO" for image montaging. For diagnostic screening/guided biopsy, we have developed a complementary wide-field FLIM endoscope employing time-gated detection with violet and UV excitation for imaging over mm-cm fields of view.
- Published
- 2011
13. PTH-143 Application of gold nanorods forin vivotheranostics of human oesophageal adenocarcinoma
- Author
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Singh, M, primary, Nabavi, E, additional, Zhou, Y, additional, Zhao, H, additional, Ma, D, additional, Cass, AE, additional, Hanna, GB, additional, and Elson, DS, additional
- Published
- 2015
- Full Text
- View/download PDF
14. Photoacoustics, thermoacoustics, and acousto-optics for biomedical imaging.
- Author
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Tang MX, Elson DS, Li R, Dunsby C, Eckersley RJ, Tang, M-X, Elson, D S, Li, R, Dunsby, C, and Eckersley, R J
- Abstract
Recently there have been significant advances in developing hybrid techniques combining electromagnetic waves with ultrasound for biomedical imaging, namely photoacoustic, thermoacoustic, and acousto-optic (or ultrasound modulated optical) tomography. All three techniques take advantage of tissue contrast offered by electromagnetic (EM) waves, while achieving good spatial resolution in deeper tissue facilitated by ultrasound. In this review the principles of the three techniques are introduced. A description of existing experimental and image reconstruction techniques is provided. Some recent key developments are highlighted and current issues in each of the areas are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2010
15. An electronically tunable ultrafast laser source applied to fluorescence imaging and fluorescence lifetime imaging microscopy
- Author
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Lanigan, Pmp, Dunsby, C., Mcginty, J., Elson, Ds, Jose Requejo-Isidro, Munro, I., Galletly, N., Treanor, B., Onfelt, B., Mccann, F., Davis, Dm, Neil, Maa, French, Pmw, and IEEE
- Abstract
We demonstrate that spectral selection from a supercontinuum generated in a microstructured fibre can provide a continuously electronically tunable ultrafast spatially coherent source for confocal microscopy and both scanning and wide field fluorescence lifetime imaging. © 2005 Optical Society of America.
16. Detection of gastrointestinal malignancy by fluorescence lifetime imaging of UV laser induced tissue autofluorescence
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Galletly, Np, Mcginty, Jm, Cohen, P., Munro, I., Elson, Ds, Requejo-Isidro, J., Dunsby, C., Mark Neil, Thillainayagam, Av, French, Pmw, and Stamp, Gw
17. '5-D' fluorescence microscopy
- Author
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Webb, Sed, Elson, Ds, Siegel, J., Leveque-Fort, S., Gu, Y., Parsons-Karavassilis, D., Cole, Mj, French, Pmw, Lever, Mj, Sucharov, Lo, Mark Neil, Juskaitis, R., Wilson, T., Anderssonengels, S., and Kaschke, Mf
18. Calibration-Jitter: Augmentation of hyperspectral data for improved surgical scene segmentation.
- Author
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Roddan A, Czempiel T, Elson DS, and Giannarou S
- Abstract
Semantic surgical scene segmentation is crucial for accurately identifying and delineating different tissue types during surgery, enhancing outcomes and reducing complications. Hyperspectral imaging provides detailed information beyond visible color filters, offering an enhanced view of tissue characteristics. Combined with machine learning, it supports critical tumor resection decisions. Traditional augmentations fail to effectively train machine learning models on illumination and sensor sensitivity variations. Learning to handle these variations is crucial to enable models to better generalize, ultimately enhancing their reliability in deployment. In this article, Calibration-Jitter is introduced, a spectral augmentation technique that leverages hyperspectral calibration variations to improve predictive performance. Evaluated on scene segmentation on a neurosurgical dataset, Calibration-Jitter achieved a F1-score of 74.35% with SegFormer, surpassing the previous best of 70.2%. This advancement addresses limitations of traditional augmentations, improving hyperspectral imaging segmentation performance., Competing Interests: The authors declare no conflicts of interest., (© 2024 The Author(s). Healthcare Technology Letters published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology.)
- Published
- 2024
- Full Text
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19. PoLambRimetry: a multispectral polarimetric atlas of lamb brain.
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Mieites V, Anichini G, Qi J, O'Neill K, Conde OM, and Elson DS
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- Animals, Sheep, White Matter diagnostic imaging, Image Processing, Computer-Assisted methods, Gray Matter diagnostic imaging, Gray Matter anatomy & histology, Anisotropy, Optical Imaging methods, Brain diagnostic imaging, Brain anatomy & histology
- Abstract
Significance: Mueller matrix imaging (MMI) is a comprehensive form of polarization imaging useful for assessing structural changes. However, there is limited literature on the polarimetric properties of brain specimens, especially with multispectral analysis., Aim: We aim to employ multispectral MMI for an exhaustive polarimetric analysis of brain structures, providing a reference dataset for future studies and enhancing the understanding of brain anatomy for clinicians and researchers., Approach: A multispectral wide-field MMI system was used to measure six fresh lamb brain specimens. Multiple decomposition methods (forward polar, symmetric, and differential) and polarization invariants (indices of polarimetric purity and anisotropy coefficients) have been calculated to obtain a complete polarimetric description of the samples. A total of 16 labels based on major brain structures, including grey matter (GM) and white matter (WM), were identified. K -nearest neighbors classification was used to distinguish between GM and WM and validate the feasibility of MMI for WM identification., Results: As the wavelength increases, both depolarization and retardance increase, suggesting enhanced tissue penetration into deeper layers. Moreover, utilizing multiple wavelengths allowed us to track dynamic shifts in the optical axis of retardance within the brain tissue, providing insights into morphological changes in WM beneath the cortical surface. The use of multispectral data for classification outperformed all results obtained with single-wavelength data and provided over 95% accuracy for the test dataset., Conclusions: The consistency of these observations highlights the potential of multispectral wide-field MMI as a non-invasive and effective technique for investigating the brain's architecture., (© 2024 The Authors.)
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- 2024
- Full Text
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20. Computational Polarization Imaging In Vivo through Surgical Smoke Using Refined Polarization Difference.
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Wang D, Song J, Gao J, Qi J, and Elson DS
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- Animals, Humans, Image Processing, Computer-Assisted methods, Robotic Surgical Procedures methods, Smoke, Surgery, Computer-Assisted methods
- Abstract
In surgery, the surgical smoke generated during tissue dissection and hemostasis can degrade the image quality, affecting tissue visibility and interfering with the further image processing. Developing reliable and interpretable computational imaging methods for restoring smoke-affected surgical images is crucial, as typical image restoration methods relying on color-texture information are insufficient. Here a computational polarization imaging method through surgical smoke is demonstrated, including a refined polarization difference estimation based on the discrete electric field direction, and a corresponding prior-based estimation method, for better parameter estimation and image restoration performance. Results and analyses for ex vivo, the first in vivo animal experiments, and human oral cavity tests show that the proposed method achieves visibility restoration and color recovery of higher quality, and exhibits good generalization across diverse imaging scenarios with interpretability. The method is expected to enhance the precision, safety, and efficiency of advanced image-guided and robotic surgery., (© 2024 The Author(s). Advanced Science published by Wiley‐VCH GmbH.)
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- 2024
- Full Text
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21. Real-time classification of tumour and non-tumour tissue in colorectal cancer using diffuse reflectance spectroscopy and neural networks to aid margin assessment.
- Author
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Nazarian S, Gkouzionis I, Murphy J, Darzi A, Patel N, Peters CJ, and Elson DS
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- Humans, Female, Male, Prospective Studies, Aged, Middle Aged, Machine Learning, Aged, 80 and over, Colorectal Neoplasms pathology, Colorectal Neoplasms surgery, Colorectal Neoplasms classification, Neural Networks, Computer, Margins of Excision, Spectrum Analysis methods
- Abstract
Background: Colorectal cancer is the third most commonly diagnosed malignancy and the second leading cause of mortality worldwide. A positive resection margin following surgery for colorectal cancer is linked with higher rates of local recurrence and poorer survival. The authors investigated diffuse reflectance spectroscopy (DRS) to distinguish tumour and non-tumour tissue in ex-vivo colorectal specimens, to aid margin assessment and provide augmented visual maps to the surgeon in real-time., Methods: Patients undergoing elective colorectal cancer resection surgery at a London-based hospital were prospectively recruited. A hand-held DRS probe was used on the surface of freshly resected ex-vivo colorectal tissue. Spectral data were acquired for tumour and non-tumour tissue. Binary classification was achieved using conventional machine learning classifiers and a convolutional neural network (CNN), which were evaluated in terms of sensitivity, specificity, accuracy and the area under the curve., Results: A total of 7692 mean spectra were obtained for tumour and non-tumour colorectal tissue. The CNN-based classifier was the best performing machine learning algorithm, when compared to contrastive approaches, for differentiating tumour and non-tumour colorectal tissue, with an overall diagnostic accuracy of 90.8% and area under the curve of 96.8%. Live on-screen classification of tissue type was achieved using a graduated colourmap., Conclusion: A high diagnostic accuracy for a DRS probe and tracking system to differentiate ex-vivo tumour and non-tumour colorectal tissue in real-time with on-screen visual feedback was highlighted by this study. Further in-vivo studies are needed to ensure integration into a surgical workflow., (Copyright © 2024 The Author(s). Published by Wolters Kluwer Health, Inc.)
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- 2024
- Full Text
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22. Monoclonal Antibodies for Targeted Fluorescence-Guided Surgery: A Review of Applicability across Multiple Solid Tumors.
- Author
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Giuliani S, Paraboschi I, McNair A, Smith M, Rankin KS, Elson DS, Paleri V, Leff D, Stasiuk G, and Anderson J
- Abstract
This study aims to review the status of the clinical use of monoclonal antibodies (mAbs) that have completed or are in ongoing clinical trials for targeted fluorescence-guided surgery (T-FGS) for the intraoperative identification of the tumor margins of extra-hematological solid tumors. For each of them, the targeted antigen, the mAb generic/commercial name and format, and clinical indications are presented, together with utility, doses, and the timing of administration. Based on the current scientific evidence in humans, the top three mAbs that could be prepared in a GMP-compliant bank ready to be delivered for surgical purposes are proposed to speed up the translation to the operating room and produce a few readily available "off-the-shelf" injectable fluorescent probes for safer and more effective solid tumor resection., Competing Interests: The authors declare no conflicts of interest.
- Published
- 2024
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23. Fluorescence guided surgery imaging systems for breast cancer identification: a systematic review.
- Author
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Kedrzycki MS, Chon HTW, Leiloglou M, Chalau V, Leff DR, and Elson DS
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- Humans, Fluorescent Dyes, Light, Breast Neoplasms diagnostic imaging, Breast Neoplasms surgery
- Abstract
Significance: Breast-conserving surgery (BCS) is limited by high rates of positive margins and re-operative interventions. Fluorescence-guided surgery seeks to detect the entire lesion in real time, thus guiding the surgeons to remove all the tumor at the index procedure., Aim: Our aim was to identify the optimal combination of a camera system and fluorophore for fluorescence-guided BCS., Approach: A systematic review of medical databases using the terms "fluorescence," "breast cancer," "surgery," and "fluorescence imaging" was performed. Cameras were compared using the ratio between the fluorescent signal from the tumor compared to background fluorescence, as well as diagnostic accuracy measures, such as sensitivity, specificity, and positive predictive value., Results: Twenty-one studies identified 14 camera systems using nine different fluorophores. Twelve cameras worked in the infrared spectrum. Ten studies reported on the difference in strength of the fluorescence signal between cancer and normal tissue, with results ranging from 1.72 to 4.7. In addition, nine studies reported on whether any tumor remained in the resection cavity (5.4% to 32.5%). To date, only three studies used the fluorescent signal for guidance during real BCS. Diagnostic accuracy ranged from 63% to 98% sensitivity, 32% to 97% specificity, and 75% to 100% positive predictive value., Conclusion: In this systematic review, all the studies reported a clinically significant difference in signal between the tumor and normal tissue using various camera/fluorophore combinations. However, given the heterogeneity in protocols, including camera setup, fluorophore studied, data acquisition, and reporting structure, it was impossible to determine the optimal camera and fluorophore combination for use in BCS. It would be beneficial to develop a standardized reporting structure using similar metrics to provide necessary data for a comparison between camera systems., (© 2024 The Authors.)
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- 2024
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24. A YOLOv5-based network for the detection of a diffuse reflectance spectroscopy probe to aid surgical guidance in gastrointestinal cancer surgery.
- Author
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Gkouzionis I, Zhong Y, Nazarian S, Darzi A, Patel N, Peters CJ, and Elson DS
- Subjects
- Humans, Retrospective Studies, Spectrum Analysis, Neural Networks, Computer, Gastrointestinal Neoplasms diagnosis, Gastrointestinal Neoplasms surgery, Digestive System Surgical Procedures
- Abstract
Purpose: A positive circumferential resection margin (CRM) for oesophageal and gastric carcinoma is associated with local recurrence and poorer long-term survival. Diffuse reflectance spectroscopy (DRS) is a non-invasive technology able to distinguish tissue type based on spectral data. The aim of this study was to develop a deep learning-based method for DRS probe detection and tracking to aid classification of tumour and non-tumour gastrointestinal (GI) tissue in real time., Methods: Data collected from both ex vivo human tissue specimen and sold tissue phantoms were used for the training and retrospective validation of the developed neural network framework. Specifically, a neural network based on the You Only Look Once (YOLO) v5 network was developed to accurately detect and track the tip of the DRS probe on video data acquired during an ex vivo clinical study., Results: Different metrics were used to analyse the performance of the proposed probe detection and tracking framework, such as precision, recall, mAP 0.5, and Euclidean distance. Overall, the developed framework achieved a 93% precision at 23 FPS for probe detection, while the average Euclidean distance error was 4.90 pixels., Conclusion: The use of a deep learning approach for markerless DRS probe detection and tracking system could pave the way for real-time classification of GI tissue to aid margin assessment in cancer resection surgery and has potential to be applied in routine surgical practice., (© 2023. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
25. Surgical polarimetric endoscopy for the detection of laryngeal cancer.
- Author
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Qi J, Tatla T, Nissanka-Jayasuriya E, Yuan AY, Stoyanov D, and Elson DS
- Subjects
- Humans, Endoscopy, Laryngeal Neoplasms diagnostic imaging, Laryngeal Neoplasms pathology, Carcinoma, Squamous Cell diagnostic imaging
- Abstract
The standard-of-care for the detection of laryngeal pathologies involves distinguishing suspicious lesions from surrounding healthy tissue via contrasts in colour and texture captured by white-light endoscopy. However, the technique is insufficiently sensitive and thus leads to unsatisfactory rates of false negatives. Here we show that laryngeal lesions can be better detected in real time by taking advantage of differences in the light-polarization properties of cancer and healthy tissues. By measuring differences in polarized-light retardance and depolarization, the technique, which we named 'surgical polarimetric endoscopy' (SPE), generates about one-order-of-magnitude greater contrast than white-light endoscopy, and hence allows for the better discrimination of cancerous lesions, as we show with patients diagnosed with squamous cell carcinoma. Polarimetric imaging of excised and stained slices of laryngeal tissue indicated that changes in the retardance of polarized light can be largely attributed to architectural features of the tissue. We also assessed SPE to aid routine transoral laser surgery for the removal of a cancerous lesion, indicating that SPE can complement white-light endoscopy for the detection of laryngeal cancer., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2023
- Full Text
- View/download PDF
26. Publisher Correction: Surgical polarimetric endoscopy for the detection of laryngeal cancer.
- Author
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Qi J, Tatla T, Nissanka-Jayasuriya E, Yuan AY, Stoyanov D, and Elson DS
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- 2023
- Full Text
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27. Guidance in breast-conserving surgery: tumour localization versus identification.
- Author
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Kedrzycki MS, Elson DS, and Leff DR
- Subjects
- Humans, Female, Mastectomy, Segmental, Breast pathology, Neoplasms, Breast Neoplasms surgery, Breast Neoplasms pathology
- Published
- 2023
- Full Text
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28. A Comparison of Spectroscopy and Imaging Techniques Utilizing Spectrally Resolved Diffusely Reflected Light for Intraoperative Margin Assessment in Breast-Conserving Surgery: A Systematic Review and Meta-Analysis.
- Author
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Shanthakumar D, Leiloglou M, Kelliher C, Darzi A, Elson DS, and Leff DR
- Abstract
Up to 19% of patients require re-excision surgery due to positive margins in breast-conserving surgery (BCS). Intraoperative margin assessment tools (IMAs) that incorporate tissue optical measurements could help reduce re-excision rates. This review focuses on methods that use and assess spectrally resolved diffusely reflected light for breast cancer detection in the intraoperative setting. Following PROSPERO registration (CRD42022356216), an electronic search was performed. The modalities searched for were diffuse reflectance spectroscopy (DRS), multispectral imaging (MSI), hyperspectral imaging (HSI), and spatial frequency domain imaging (SFDI). The inclusion criteria encompassed studies of human in vivo or ex vivo breast tissues, which presented data on accuracy. The exclusion criteria were contrast use, frozen samples, and other imaging adjuncts. 19 studies were selected following PRISMA guidelines. Studies were divided into point-based (spectroscopy) or whole field-of-view (imaging) techniques. A fixed-or random-effects model analysis generated pooled sensitivity/specificity for the different modalities, following heterogeneity calculations using the Q statistic. Overall, imaging-based techniques had better pooled sensitivity/specificity (0.90 (CI 0.76-1.03)/0.92 (CI 0.78-1.06)) compared with probe-based techniques (0.84 (CI 0.78-0.89)/0.85 (CI 0.79-0.91)). The use of spectrally resolved diffusely reflected light is a rapid, non-contact technique that confers accuracy in discriminating between normal and malignant breast tissue, and it constitutes a potential IMA tool.
- Published
- 2023
- Full Text
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29. Introduction to the Biophotonics Congress 2022 feature issue.
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Liu JTC, Bale G, Choe R, Elson DS, Oldenburg A, Tian L, and Tkaczyk ER
- Abstract
A feature issue is being presented by a team of guest editors containing papers based on studies presented at the Optica Biophotonics Congress: Biomedical Optics held on April 24-27, 2022 in Fort Lauderdale, Florida, USA., (© 2022 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement.)
- Published
- 2022
- Full Text
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30. ASO Author Reflections: Towards Fluorescence Guided Tumor Identification for Precision Breast Conserving Surgery.
- Author
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Leiloglou M, Kedrzycki MS, Elson DS, and Leff DR
- Subjects
- Humans, Female, Mastectomy, Segmental, Breast, Data Collection, Neoplasms, Breast Neoplasms surgery
- Published
- 2022
- Full Text
- View/download PDF
31. Real-time Tracking and Classification of Tumor and Nontumor Tissue in Upper Gastrointestinal Cancers Using Diffuse Reflectance Spectroscopy for Resection Margin Assessment.
- Author
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Nazarian S, Gkouzionis I, Kawka M, Jamroziak M, Lloyd J, Darzi A, Patel N, Elson DS, and Peters CJ
- Subjects
- Humans, Male, Aged, Aged, 80 and over, Female, Margins of Excision, Prospective Studies, Spectrum Analysis methods, Esophageal Neoplasms diagnosis, Esophageal Neoplasms surgery, Stomach Neoplasms diagnosis, Stomach Neoplasms surgery, Adenocarcinoma diagnosis, Adenocarcinoma surgery, Upper Gastrointestinal Tract pathology
- Abstract
Importance: Cancers of the upper gastrointestinal tract remain a major contributor to the global cancer burden. The accurate mapping of tumor margins is of particular importance for curative cancer resection and improvement in overall survival. Current mapping techniques preclude a full resection margin assessment in real time., Objective: To evaluate whether diffuse reflectance spectroscopy (DRS) on gastric and esophageal cancer specimens can differentiate tissue types and provide real-time feedback to the operator., Design, Setting, and Participants: This was a prospective ex vivo validation study. Patients undergoing esophageal or gastric cancer resection were prospectively recruited into the study between July 2020 and July 2021 at Hammersmith Hospital in London, United Kingdom. Tissue specimens were included for patients undergoing elective surgery for either esophageal carcinoma (adenocarcinoma or squamous cell carcinoma) or gastric adenocarcinoma., Exposures: A handheld DRS probe and tracking system was used on freshly resected ex vivo tissue to obtain spectral data. Binary classification, following histopathological validation, was performed using 4 supervised machine learning classifiers., Main Outcomes and Measures: Data were divided into training and testing sets using a stratified 5-fold cross-validation method. Machine learning classifiers were evaluated in terms of sensitivity, specificity, overall accuracy, and the area under the curve., Results: Of 34 included patients, 22 (65%) were male, and the median (range) age was 68 (35-89) years. A total of 14 097 mean spectra for normal and cancerous tissue were collected. For normal vs cancer tissue, the machine learning classifier achieved a mean (SD) overall diagnostic accuracy of 93.86% (0.66) for stomach tissue and 96.22% (0.50) for esophageal tissue and achieved a mean (SD) sensitivity and specificity of 91.31% (1.5) and 95.13% (0.8), respectively, for stomach tissue and of 94.60% (0.9) and 97.28% (0.6) for esophagus tissue. Real-time tissue tracking and classification was achieved and presented live on screen., Conclusions and Relevance: This study provides ex vivo validation of the DRS technology for real-time differentiation of gastric and esophageal cancer from healthy tissue using machine learning with high accuracy. As such, it is a step toward the development of a real-time in vivo tumor mapping tool for esophageal and gastric cancers that can aid decision-making of resection margins intraoperatively.
- Published
- 2022
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32. Indocyanine green fluorescence image processing techniques for breast cancer macroscopic demarcation.
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Leiloglou M, Kedrzycki MS, Chalau V, Chiarini N, Thiruchelvam PTR, Hadjiminas DJ, Hogben KR, Rashid F, Ramakrishnan R, Darzi AW, Leff DR, and Elson DS
- Subjects
- Female, Fluorescence, Formaldehyde, Humans, Margins of Excision, Mastectomy, Segmental methods, Optical Imaging methods, Breast Neoplasms diagnostic imaging, Breast Neoplasms surgery, Indocyanine Green
- Abstract
Re-operation due to disease being inadvertently close to the resection margin is a major challenge in breast conserving surgery (BCS). Indocyanine green (ICG) fluorescence imaging could be used to visualize the tumor boundaries and help surgeons resect disease more efficiently. In this work, ICG fluorescence and color images were acquired with a custom-built camera system from 40 patients treated with BCS. Images were acquired from the tumor in-situ, surgical cavity post-excision, freshly excised tumor and histopathology tumour grossing. Fluorescence image intensity and texture were used as individual or combined predictors in both logistic regression (LR) and support vector machine models to predict the tumor extent. ICG fluorescence spectra in formalin-fixed histopathology grossing tumor were acquired and analyzed. Our results showed that ICG remains in the tissue after formalin fixation. Therefore, tissue imaging could be validated in freshly excised and in formalin-fixed grossing tumor. The trained LR model with combined fluorescence intensity (pixel values) and texture (slope of power spectral density curve) identified the tumor's extent in the grossing images with pixel-level resolution and sensitivity, specificity of 0.75 ± 0.3, 0.89 ± 0.2.This model was applied on tumor in-situ and surgical cavity (post-excision) images to predict tumor presence., (© 2022. The Author(s).)
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- 2022
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33. Simultaneous Depth Estimation and Surgical Tool Segmentation in Laparoscopic Images.
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Huang B, Nguyen A, Wang S, Wang Z, Mayer E, Tuch D, Vyas K, Giannarou S, and Elson DS
- Abstract
Surgical instrument segmentation and depth estimation are crucial steps to improve autonomy in robotic surgery. Most recent works treat these problems separately, making the deployment challenging. In this paper, we propose a unified framework for depth estimation and surgical tool segmentation in laparoscopic images. The network has an encoder-decoder architecture and comprises two branches for simultaneously performing depth estimation and segmentation. To train the network end to end, we propose a new multi-task loss function that effectively learns to estimate depth in an unsupervised manner, while requiring only semi-ground truth for surgical tool segmentation. We conducted extensive experiments on different datasets to validate these findings. The results showed that the end-to-end network successfully improved the state-of-the-art for both tasks while reducing the complexity during their deployment.
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- 2022
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34. Self-supervised Monocular Depth Estimation with 3D Displacement Module for Laparoscopic Images.
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Xu C, Huang B, and Elson DS
- Abstract
We present a novel self-supervised training framework with 3D displacement (3DD) module for accurately estimating per-pixel depth maps from single laparoscopic images. Recently, several self-supervised learning based monocular depth estimation models have achieved good results on the KITTI dataset, under the hypothesis that the camera is dynamic and the objects are stationary, however this hypothesis is often reversed in the surgical setting (laparoscope is stationary, the surgical instruments and tissues are dynamic). Therefore, a 3DD module is proposed to establish the relation between frames instead of ego-motion estimation. In the 3DD module, a convolutional neural network (CNN) analyses source and target frames to predict the 3D displacement of a 3D point cloud from a target frame to a source frame in the coordinates of the camera. Since it is difficult to constrain the depth displacement from two 2D images, a novel depth consistency module is proposed to maintain depth consistency between displacement-updated depth and model-estimated depth to constrain 3D displacement effectively. Our proposed method achieves remarkable performance for monocular depth estimation on the Hamlyn surgical dataset and acquired ground truth depth maps, outperforming monodepth, monodepth2 and packnet models.
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- 2022
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35. A systematic review of robotic surgery: From supervised paradigms to fully autonomous robotic approaches.
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Han J, Davids J, Ashrafian H, Darzi A, Elson DS, and Sodergren M
- Subjects
- Artificial Intelligence, Humans, Machine Learning, Laparoscopy methods, Robotic Surgical Procedures methods, Robotics
- Abstract
Background: From traditional open surgery to laparoscopic surgery and robot-assisted surgery, advances in robotics, machine learning, and imaging are pushing the surgical approach to-wards better clinical outcomes. Pre-clinical and clinical evidence suggests that automation may standardise techniques, increase efficiency, and reduce clinical complications., Methods: A PRISMA-guided search was conducted across PubMed and OVID., Results: Of the 89 screened articles, 51 met the inclusion criteria, with 10 included in the final review. Automatic data segmentation, trajectory planning, intra-operative registration, trajectory drilling, and soft tissue robotic surgery were discussed., Conclusion: Although automated surgical systems remain conceptual, several research groups have developed supervised autonomous robotic surgical systems with increasing consideration for ethico-legal issues for automation. Automation paves the way for precision surgery and improved safety and opens new possibilities for deploying more robust artificial intelligence models, better imaging modalities and robotics to improve clinical outcomes., (© 2021 John Wiley & Sons Ltd.)
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- 2022
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36. Polarization-based smoke removal method for surgical images.
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Wang D, Qi J, Huang B, Noble E, Stoyanov D, Gao J, and Elson DS
- Abstract
Smoke generated during surgery affects tissue visibility and degrades image quality, affecting surgical decisions and limiting further image processing and analysis. Polarization is a fundamental property of light and polarization-resolved imaging has been studied and applied to general visibility restoration scenarios such as for smog or mist removal or in underwater environments. However, there is no related research or application for surgical smoke removal. Due to differences between surgical smoke and general haze scenarios, we propose an alternative imaging degradation model by redefining the form of the transmission parameters. The analysis of the propagation of polarized light interacting with the mixed medium of smoke and tissue is proposed to realize polarization-based smoke removal (visibility restoration). Theoretical analysis and observation of experimental data shows that the cross-polarized channel data generated by multiple scattering is less affected by smoke compared to the co-polarized channel. The polarization difference calculation for different color channels can estimate the model transmission parameters and reconstruct the image with restored visibility. Qualitative and quantitative comparison with alternative methods show that the polarization-based image smoke-removal method can effectively reduce the degradation of biomedical images caused by surgical smoke and partially restore the original degree of polarization of the samples., Competing Interests: The authors declare no conflicts of interest., (Published by Optica Publishing Group under the terms of the Creative Commons Attribution 4.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI.)
- Published
- 2022
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37. Real-time tracking of a diffuse reflectance spectroscopy probe used to aid histological validation of margin assessment in upper gastrointestinal cancer resection surgery.
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Gkouzionis I, Nazarian S, Kawka M, Darzi A, Patel N, Peters CJ, and Elson DS
- Subjects
- Computer Systems, Humans, Spectrum Analysis, Gastrointestinal Neoplasms diagnostic imaging, Gastrointestinal Neoplasms surgery, Margins of Excision
- Abstract
Significance: Diffuse reflectance spectroscopy (DRS) allows discrimination of tissue type. Its application is limited by the inability to mark the scanned tissue and the lack of real-time measurements., Aim: This study aimed to develop a real-time tracking system to enable localization of a DRS probe to aid the classification of tumor and non-tumor tissue., Approach: A green-colored marker attached to the DRS probe was detected using hue-saturation-value (HSV) segmentation. A live, augmented view of tracked optical biopsy sites was recorded in real time. Supervised classifiers were evaluated in terms of sensitivity, specificity, and overall accuracy. A developed software was used for data collection, processing, and statistical analysis., Results: The measured root mean square error (RMSE) of DRS probe tip tracking was 1.18 ± 0.58 mm and 1.05 ± 0.28 mm for the x and y dimensions, respectively. The diagnostic accuracy of the system to classify tumor and non-tumor tissue in real time was 94% for stomach and 96% for the esophagus., Conclusions: We have successfully developed a real-time tracking and classification system for a DRS probe. When used on stomach and esophageal tissue for tumor detection, the accuracy derived demonstrates the strength and clinical value of the technique to aid margin assessment in cancer resection surgery.
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- 2022
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38. The Impact of Temporal Variation in Indocyanine Green Administration on Tumor Identification During Fluorescence Guided Breast Surgery.
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Kedrzycki MS, Leiloglou M, Chalau V, Chiarini N, Thiruchelvam PTR, Hadjiminas DJ, Hogben KR, Rashid F, Ramakrishnan R, Darzi AW, Elson DS, and Leff DR
- Subjects
- Female, Humans, Margins of Excision, Mastectomy, Segmental, Prospective Studies, Breast Neoplasms diagnostic imaging, Breast Neoplasms surgery, Indocyanine Green
- Abstract
Background: On average, 21% of women in the USA treated with Breast Conserving Surgery (BCS) undergo a second operation because of close positive margins. Tumor identification with fluorescence imaging could improve positive margin rates through demarcating location, size, and invasiveness of tumors. We investigated the technique's diagnostic accuracy in detecting tumors during BCS using intravenous indocyanine green (ICG) and a custom-built fluorescence camera system., Methods: In this single-center prospective clinical study, 40 recruited BCS patients were sub-categorized into two cohorts. In the first 'enhanced permeability and retention' (EPR) cohort, 0.25 mg/kg ICG was injected ~ 25 min prior to tumor excision, and in the second 'angiography' cohort, ~ 5 min prior to tumor excision. Subsequently, an in-house imaging system was used to image the tumor in situ prior to resection, ex vivo following resection, the resection bed, and during grossing in the histopathology laboratory to compare the technique's diagnostic accuracy between the cohorts., Results: The two cohorts were matched in patient and tumor characteristics. The majority of patients had invasive ductal carcinoma with concomitant ductal carcinoma in situ. Tumor-to-background ratio (TBR) in the angiography cohort was superior to the EPR cohort (TBR = 3.18 ± 1.74 vs 2.10 ± 0.92 respectively, p = 0.023). Tumor detection reached sensitivity and specificity scores of 0.82 and 0.93 for the angiography cohort and 0.66 and 0.90 for the EPR cohort, respectively (p = 0.1051 and p = 0.9099)., Discussion: ICG administration timing during the angiography phase compared with the EPR phase improved TBR and diagnostic accuracy. Future work will focus on image pattern analysis and adaptation of the camera system to targeting fluorophores specific to breast cancer., (© 2021. Crown.)
- Published
- 2021
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39. Establishing key research questions for the implementation of artificial intelligence in colonoscopy: a modified Delphi method.
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Ahmad OF, Mori Y, Misawa M, Kudo SE, Anderson JT, Bernal J, Berzin TM, Bisschops R, Byrne MF, Chen PJ, East JE, Eelbode T, Elson DS, Gurudu SR, Histace A, Karnes WE, Repici A, Singh R, Valdastri P, Wallace MB, Wang P, Stoyanov D, and Lovat LB
- Subjects
- Delphi Technique, Humans, Artificial Intelligence, Colonoscopy
- Abstract
BACKGROUND : Artificial intelligence (AI) research in colonoscopy is progressing rapidly but widespread clinical implementation is not yet a reality. We aimed to identify the top implementation research priorities. METHODS : An established modified Delphi approach for research priority setting was used. Fifteen international experts, including endoscopists and translational computer scientists/engineers, from nine countries participated in an online survey over 9 months. Questions related to AI implementation in colonoscopy were generated as a long-list in the first round, and then scored in two subsequent rounds to identify the top 10 research questions. RESULTS : The top 10 ranked questions were categorized into five themes. Theme 1: clinical trial design/end points (4 questions), related to optimum trial designs for polyp detection and characterization, determining the optimal end points for evaluation of AI, and demonstrating impact on interval cancer rates. Theme 2: technological developments (3 questions), including improving detection of more challenging and advanced lesions, reduction of false-positive rates, and minimizing latency. Theme 3: clinical adoption/integration (1 question), concerning the effective combination of detection and characterization into one workflow. Theme 4: data access/annotation (1 question), concerning more efficient or automated data annotation methods to reduce the burden on human experts. Theme 5: regulatory approval (1 question), related to making regulatory approval processes more efficient. CONCLUSIONS : This is the first reported international research priority setting exercise for AI in colonoscopy. The study findings should be used as a framework to guide future research with key stakeholders to accelerate the clinical implementation of AI in endoscopy., Competing Interests: Y. Mori has received consultancy and lecture fees from Olympus Corporation. M. Misawa has received consultancy and lecture fees from Olympus Corporation. T. Berzin has received consultancy fees from Wision AI, Medtronic, and Boston Scientific. M.F. Byrne is CEO and shareholder of Satisfai Health; founder of AI4GI joint venture, a co-development agreement between Olympus America and AI4GI in artificial intelligence and colorectal polyps. J.E. East is on the clinical advisory boards of Boston Scientific, Lumendi (2017 – 2019), and Satisfai Health (2020), and has received speaker’s fees from Falk. W.E. Karnes is co-founder and chief medical officer of DocBot. A. Repici has received consultancy fees and is on the advisory board for Medtronic; he has received consultancy fees, research support, and is on the advisory board for FujiFilm. M.B. Wallace has received consultancy fees from Virgo Inc., Cosmo/Aries Pharmaceuticals, Anx Robotica (2019), Covidien, and GI Supply; he has received research grants from Fujifilm, Boston Scientific, Olympus, Medtronic, Ninepoint Medical, and Cosmo/Aries Pharmaceuticals; he also has stock/stock options in Virgo Inc.; he has provided consulting on behalf of Mayo Clinic to GI Supply (2018), Endokey, Endostart, Boston Scientific, and Microtek; he has also received general payments/minor food and beverage from Synergy Pharmaceuticals, Boston Scientific, and Cook Medical. D. Stoyanov is a shareholder in Odin Vision and Digital Surgery. L.B. Lovat is a minor shareholder and is on the advisory board of Odin Vision; he has received research grants from Medtronic, Pentax Medical, and DynamX; he is also on the advisory board for DynamX and Ninepoint Medical. O.F. Ahmad, S. Kudo, J.T. Anderson, J. Bernal, R. Bisschops, P. Chen, T. Eelbode, D.S. Elson, S.R. Gurudu, A. Histace, R. Singh, P.Valdastri and P.Wang declare that they have no conflict of interest., (© 2020. The Author(s). This is an open access article published by Thieme under the terms of the Creative Commons Attribution License, permitting unrestricted use, distribution, and reproduction so long as the original work is properly cited. (https://creativecommons.org/licenses/by/4.0/).)
- Published
- 2021
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40. Corrigendum to Dual-modality endoscopic probe for tissue surface shape reconstruction and hyperspectral imaging enabled by deep neural networks [Medical Image Analysis 48 (2018) 162-176/2018.06.004].
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Lin J, Clancy NT, Qi J, Hu Y, Tatla T, Stoyanov D, Maier-Hein L, and Elson DS
- Published
- 2021
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41. ASO Author Reflections: Fluorescence-Guided Sentinel Node Biopsy for Breast Cancer.
- Author
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Kedrzycki MS, Elson DS, and Leff DR
- Subjects
- Axilla, Female, Humans, Lymph Nodes surgery, Sentinel Lymph Node Biopsy, Breast Neoplasms surgery, Sentinel Lymph Node surgery
- Published
- 2021
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42. Meta-analysis Comparing Fluorescence Imaging with Radioisotope and Blue Dye-Guided Sentinel Node Identification for Breast Cancer Surgery.
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Kedrzycki MS, Leiloglou M, Ashrafian H, Jiwa N, Thiruchelvam PTR, Elson DS, and Leff DR
- Subjects
- Coloring Agents, Female, Fluorescence, Humans, Indocyanine Green, Optical Imaging, Radioisotopes, Sentinel Lymph Node Biopsy, Breast Neoplasms diagnostic imaging, Breast Neoplasms surgery, Sentinel Lymph Node diagnostic imaging, Sentinel Lymph Node surgery
- Abstract
Introduction: Conventional methods for axillary sentinel lymph node biopsy (SLNB) are fraught with complications such as allergic reactions, skin tattooing, radiation, and limitations on infrastructure. A novel technique has been developed for lymphatic mapping utilizing fluorescence imaging. This meta-analysis aims to compare the gold standard blue dye and radioisotope (BD-RI) technique with fluorescence-guided SLNB using indocyanine green (ICG)., Methods: This study was registered with PROSPERO (CRD42019129224). The MEDLINE, EMBASE, Scopus, and Web of Science databases were searched using the Medical Subject Heading (MESH) terms 'Surgery' AND 'Lymph node' AND 'Near infrared fluorescence' AND 'Indocyanine green'. Studies containing raw data on the sentinel node identification rate in breast cancer surgery were included. A heterogeneity test (using Cochran's Q) determined the use of fixed- or random-effects models for pooled odds ratios (OR)., Results: Overall, 1748 studies were screened, of which 10 met the inclusion criteria for meta-analysis. ICG was equivalent to radioisotope (RI) at sentinel node identification (OR 2.58, 95% confidence interval [CI] 0.35-19.08, p < 0.05) but superior to blue dye (BD) (OR 9.07, 95% CI 6.73-12.23, p < 0.05). Furthermore, ICG was superior to the gold standard BD-RI technique (OR 4.22, 95% CI 2.17-8.20, p < 0.001)., Conclusion: Fluorescence imaging for axillary sentinel node identification with ICG is equivalent to the single technique using RI, and superior to the dual technique (RI-BD) and single technique with BD. Hospitals using RI and/or BD could consider changing their practice to ICG given the comparable efficacy and improved safety profile, as well as the lesser burden on hospital infrastructure.
- Published
- 2021
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43. Tracking and visualization of the sensing area for a tethered laparoscopic gamma probe.
- Author
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Huang B, Tsai YY, Cartucho J, Vyas K, Tuch D, Giannarou S, and Elson DS
- Subjects
- Gamma Rays, Humans, Male, Minimally Invasive Surgical Procedures methods, Laparoscopy methods, Prostatic Neoplasms surgery, Surgery, Computer-Assisted methods
- Abstract
Purpose: In surgical oncology, complete cancer resection and lymph node identification are challenging due to the lack of reliable intraoperative visualization. Recently, endoscopic radio-guided cancer resection has been introduced where a novel tethered laparoscopic gamma detector can be used to determine the location of tracer activity, which can complement preoperative nuclear imaging data and endoscopic imaging. However, these probes do not clearly indicate where on the tissue surface the activity originates, making localization of pathological sites difficult and increasing the mental workload of the surgeons. Therefore, a robust real-time gamma probe tracking system integrated with augmented reality is proposed., Methods: A dual-pattern marker has been attached to the gamma probe, which combines chessboard vertices and circular dots for higher detection accuracy. Both patterns are detected simultaneously based on blob detection and the pixel intensity-based vertices detector and used to estimate the pose of the probe. Temporal information is incorporated into the framework to reduce tracking failure. Furthermore, we utilized the 3D point cloud generated from structure from motion to find the intersection between the probe axis and the tissue surface. When presented as an augmented image, this can provide visual feedback to the surgeons., Results: The method has been validated with ground truth probe pose data generated using the OptiTrack system. When detecting the orientation of the pose using circular dots and chessboard dots alone, the mean error obtained is [Formula: see text] and [Formula: see text], respectively. As for the translation, the mean error for each pattern is 1.78 mm and 1.81 mm. The detection limits for pitch, roll and yaw are [Formula: see text] and [Formula: see text]-[Formula: see text]-[Formula: see text] ., Conclusion: The performance evaluation results show that this dual-pattern marker can provide high detection rates, as well as more accurate pose estimation and a larger workspace than the previously proposed hybrid markers. The augmented reality will be used to provide visual feedback to the surgeons on the location of the affected lymph nodes or tumor.
- Published
- 2020
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44. Surgical spectral imaging.
- Author
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Clancy NT, Jones G, Maier-Hein L, Elson DS, and Stoyanov D
- Subjects
- Humans, Image Processing, Computer-Assisted, Machine Learning, Artificial Intelligence, Diagnostic Imaging
- Abstract
Recent technological developments have resulted in the availability of miniaturised spectral imaging sensors capable of operating in the multi- (MSI) and hyperspectral imaging (HSI) regimes. Simultaneous advances in image-processing techniques and artificial intelligence (AI), especially in machine learning and deep learning, have made these data-rich modalities highly attractive as a means of extracting biological information non-destructively. Surgery in particular is poised to benefit from this, as spectrally-resolved tissue optical properties can offer enhanced contrast as well as diagnostic and guidance information during interventions. This is particularly relevant for procedures where inherent contrast is low under standard white light visualisation. This review summarises recent work in surgical spectral imaging (SSI) techniques, taken from Pubmed, Google Scholar and arXiv searches spanning the period 2013-2019. New hardware, optimised for use in both open and minimally-invasive surgery (MIS), is described, and recent commercial activity is summarised. Computational approaches to extract spectral information from conventional colour images are reviewed, as tip-mounted cameras become more commonplace in MIS. Model-based and machine learning methods of data analysis are discussed in addition to simulation, phantom and clinical validation experiments. A wide variety of surgical pilot studies are reported but it is apparent that further work is needed to quantify the clinical value of MSI/HSI. The current trend toward data-driven analysis emphasises the importance of widely-available, standardised spectral imaging datasets, which will aid understanding of variability across organs and patients, and drive clinical translation., Competing Interests: Declaration of Competing Interest None., (Copyright © 2020. Published by Elsevier B.V.)
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- 2020
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45. Complex vectorial optics through gradient index lens cascades.
- Author
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He C, Chang J, Hu Q, Wang J, Antonello J, He H, Liu S, Lin J, Dai B, Elson DS, Xi P, Ma H, and Booth MJ
- Subjects
- Birefringence, Neoplasms diagnosis, Refractometry, Scanning Laser Polarimetry methods, Endoscopy instrumentation, Lenses, Neoplasms diagnostic imaging, Optics and Photonics, Scanning Laser Polarimetry instrumentation
- Abstract
Graded index (GRIN) lenses are commonly used for compact imaging systems. It is not widely appreciated that the ion-exchange process that creates the rotationally symmetric GRIN lens index profile also causes a symmetric birefringence variation. This property is usually considered a nuisance, such that manufacturing processes are optimized to keep it to a minimum. Here, rather than avoiding this birefringence, we understand and harness it by using GRIN lenses in cascade with other optical components to enable extra functionality in commonplace GRIN lens systems. We show how birefringence in the GRIN cascades can generate vector vortex beams and foci, and how it can be used advantageously to improve axial resolution. Through using the birefringence for analysis, we show that the GRIN cascades form the basis of a new single-shot Müller matrix polarimeter with potential for endoscopic label-free cancer diagnostics. The versatility of these cascades opens up new technological directions.
- Published
- 2019
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46. Polyfunctionalised Nanoparticles Bearing Robust Gadolinium Surface Units for High Relaxivity Performance in MRI.
- Author
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Chabloz NG, Wenzel MN, Perry HL, Yoon IC, Molisso S, Stasiuk GJ, Elson DS, Cass AEG, and Wilton-Ely JDET
- Abstract
The first example of an octadentate gadolinium unit based on DO3A (hydration number q=1) with a dithiocarbamate tether has been designed and attached to the surface of gold nanoparticles (around 4.4 nm in diameter). In addition to the superior robustness of this attachment, the restricted rotation of the Gd complex on the nanoparticle surface leads to a dramatic increase in relaxivity (r
1 ) from 4.0 mm-1 s-1 in unbound form to 34.3 mm-1 s-1 (at 10 MHz, 37 °C) and 22±2 mm-1 s-1 (at 63.87 MHz, 25 °C) when immobilised on the surface. The one-pot synthetic route provides a straightforward and versatile way of preparing a range of multifunctional gold nanoparticles. The incorporation of additional surface units for biocompatibility (PEG and thioglucose units) and targeting (folic acid) leads to little detrimental effect on the high relaxivity observed for these non-toxic multifunctional materials. In addition to the passive targeting attributed to gold nanoparticles, the inclusion of a unit capable of targeting the folate receptors overexpressed by cancer cells, such as HeLa cells, illustrates the potential of these assemblies., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2019
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47. Estimation of tissue oxygen saturation from RGB images and sparse hyperspectral signals based on conditional generative adversarial network.
- Author
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Li Q, Lin J, Clancy NT, and Elson DS
- Subjects
- Animals, Swine, Intestines diagnostic imaging, Ischemia diagnostic imaging, Optical Imaging methods, Oxygen
- Abstract
Purpose: Intra-operative measurement of tissue oxygen saturation ([Formula: see text]) is important in detection of ischaemia, monitoring perfusion and identifying disease. Hyperspectral imaging (HSI) measures the optical reflectance spectrum of the tissue and uses this information to quantify its composition, including [Formula: see text]. However, real-time monitoring is difficult due to capture rate and data processing time., Methods: An endoscopic system based on a multi-fibre probe was previously developed to sparsely capture HSI data (sHSI). These were combined with RGB images, via a deep neural network, to generate high-resolution hypercubes and calculate [Formula: see text]. To improve accuracy and processing speed, we propose a dual-input conditional generative adversarial network, Dual2StO2, to directly estimate [Formula: see text] by fusing features from both RGB and sHSI., Results: Validation experiments were carried out on in vivo porcine bowel data, where the ground truth [Formula: see text] was generated from the HSI camera. Performance was also compared to our previous super-spectral-resolution network, SSRNet in terms of mean [Formula: see text] prediction accuracy and structural similarity metrics. Dual2StO2 was also tested using simulated probe data with varying fibre number., Conclusions: [Formula: see text] estimation by Dual2StO2 is visually closer to ground truth in general structure and achieves higher prediction accuracy and faster processing speed than SSRNet. Simulations showed that results improved when a greater number of fibres are used in the probe. Future work will include refinement of the network architecture, hardware optimization based on simulation results, and evaluation of the technique in clinical applications beyond [Formula: see text] estimation.
- Published
- 2019
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48. Eigenvalue calibration method for 3 × 3 Mueller polarimeters.
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Qi J, Elson DS, and Stoyanov D
- Abstract
3×3 Mueller polarimetry has shown potential for tissue characterization applications, however, calibration has not been fully addressed. We demonstrate a 3×3 Mueller polarimeter eigenvalue calibration method, inspired by those for full Mueller polarimeters. We also investigate the optimal combination of calibration measurements. Our method does not rely on modeling the polarization state generator, polarization state analyzer, or precise knowledge of calibration sample properties or orientations. It is therefore easy to implement, and the experimental results of a linear polarizer test sample, as well as a biological specimen, are presented.
- Published
- 2019
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49. Quantification and Analysis of Laryngeal Closure From Endoscopic Videos.
- Author
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Lin J, Walsted ES, Backer V, Hull JH, and Elson DS
- Subjects
- Algorithms, Humans, Larynx physiology, Reproducibility of Results, Video Recording, Image Processing, Computer-Assisted methods, Laryngoscopy methods, Larynx diagnostic imaging, Neural Networks, Computer, Signal Processing, Computer-Assisted
- Abstract
Objective: At present, there are no objective techniques to quantify and describe laryngeal obstruction, and the reproducibility of subjective manual quantification methods is insufficient, resulting in diagnostic inaccuracy and a poor signal-to-noise ratio in medical research. In this work, a workflow is proposed to quantify laryngeal movements from laryngoscopic videos, to facilitate the diagnosis procedure., Methods: The proposed method analyses laryngoscopic videos, and delineates glottic opening, vocal folds, and supraglottic structures, using a convolutional neural networks (CNNs) based algorithm. The segmentation is divided into two steps: A bounding box which indicates the region of interest (RoI) is found, followed by segmentation using fully convolutional networks (FCNs). The segmentation results are statistically quantified along the temporal dimension and processed using singular spectrum analysis (SSA), to extract clear objective information that can be used by the clinicians in diagnosis., Results: The segmentation was validated on 400 images from 20 videos acquired using different endoscopic systems from different patients. The results indicated significant improvements over using FCN only in terms of both processing speed (16 FPS vs. 8 FPS) and segmentation result statistics. Five clinical cases on patients have also been provided to showcase the quantitative analysis results using the proposed method., Conclusion: The proposed method guarantees a robust and fast processing of laryngoscopic videos. Measurements of glottic angles and supraglottic index showed distinctive patterns in the provided clinical cases., Significance: The proposed automated and objective method extracts important temporal laryngeal movement information, which can be used to aid laryngeal closure diagnosis.
- Published
- 2019
- Full Text
- View/download PDF
50. Laparoscopic fluorescence image-guided photothermal therapy enhances cancer diagnosis and treatment.
- Author
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Singh M, Nabavi E, Zhou Y, Gallina ME, Zhao H, Ruenraroengsak P, Porter AE, Ma D, Cass AEG, Hanna GB, and Elson DS
- Subjects
- Animals, Cell Line, Tumor, Humans, Male, Mice, Mice, Nude, Xenograft Model Antitumor Assays, Gold chemistry, Gold pharmacology, Hyperthermia, Induced, Laparoscopy, Metal Nanoparticles chemistry, Metal Nanoparticles therapeutic use, Nanotubes chemistry, Neoplasms, Experimental diagnostic imaging, Neoplasms, Experimental therapy, Optical Imaging, Phototherapy
- Abstract
Endoscopy is the gold standard investigation in the diagnosis of gastrointestinal cancers and the management of early and pre-malignant lesions either by resection or ablation. Recently gold nanoparticles have shown promise in cancer diagnosis and therapeutics (theranostics). The combination of multifunctional gold nanoparticles with near infrared fluorescence endoscopy for accurate mapping of early or pre-malignant lesions can potentially enhance diagnostic efficiency while precisely directing endoscopic near infrared photothermal therapy for established cancers. The integration of endoscopy with near infrared fluorescence imaging and photothermal therapy was aided by the accumulation of our multifunctionalized PEG-GNR-Cy5.5-anti-EGFR-antibody gold nanorods within gastrointestinal tumor xenografts in BALB/c mice. Control mice (with tumors) received either gold nanorods or photothermal therapy, while study mice received both treatment modalities. Local (tumor-centric) and systemic effects were examined for 30 days. Clear endoscopic near infrared fluorescence signals were observed emanating specifically from tumor sites and these corresponded precisely to the tumor margins. Endoscopic fluorescence-guided near infrared photothermal therapy successfully induced tumor ablations in all 20 mice studied, with complete histological clearance and minimal collateral damage. Multi-source analysis from histology, electron microscopy, mass spectrometry, blood, clinical evaluation, psychosocial and weight monitoring demonstrated the inherent safety of this technology. The combination of this innovative nanotechnology with gold standard clinical practice will be of value in enhancing the early optical detection of gastrointestinal cancers and a useful adjunct for its therapy., Competing Interests: Competing Interests: The authors have declared that no competing interest exists.
- Published
- 2019
- Full Text
- View/download PDF
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