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Consumer cameras, especially on smartphones, are popular and effective instruments for above-water radiometry. The remote sensing reflectance Rrs is measured above the water surface and used to estimate inherent optical properties and constituent concentrations. Two smartphone apps, HydroColor and EyeOnWater, are used worldwide by professional and citizen scientists alike. However, consumer camera data have problems with accuracy and reproducibility between cameras, with systematic differences of up to 40% in intercomparisons. These problems stem from the need, until recently, to use JPEG data. Lossless data, in the RAW format, and calibrations of the spectral and radiometric response of consumer cameras can now be used to significantly improve the data quality. Here, we apply these methods to above-water radiometry. The resulting accuracy in Rrs is around 10% in the red, green, and blue (RGB) bands and 2% in the RGB band ratios, similar to professional instruments and up to 9 times better than existing smartphone-based methods. Data from different smartphones are reproducible to within measurement uncertainties, which are on the percent level. The primary sources of uncertainty are environmental factors and sensor noise. We conclude that using RAW data, smartphones and other consumer cameras are complementary to professional instruments in terms of data quality. We offer practical recommendations for using consumer cameras in professional and citizen science.

Changes in airborne high spectral resolution lidar (HSRL) measurements of scattering, depolarization, and attenuation coincided with a shift in phytoplankton community composition across an anticyclonic eddy in the North Atlantic. We normalized the total depolarization ratio (δ) by the particulate backscattering coefficient (bbp) to account for the covariance in δ and bbp that has been attributed to multiple scattering. A 15% increase in δ/bbp inside the eddy coincided with decreased phytoplankton biomass and a shift to smaller and more elongated phytoplankton cells. Taxonomic changes (reduced dinoflagellate relative abundance inside the eddy) were also observed. The δ signal is thus potentially most sensitive to changes in phytoplankton shape because neither the observed change in the particle size distribution (PSD) nor refractive index (assuming average refractive indices) are consistent with previous theoretical modeling results. We additionally calculated chlorophyll-a (Chl) concentrations from measurements of the diffuse light attenuation coefficient (Kd) and divided by bbp to evaluate another optical metric of phytoplankton community composition (Chl:bbp), which decreased by more than a factor of two inside the eddy. This case study demonstrates that the HSRL is able to detect changes in phytoplankton community composition. High spectral resolution lidar measurements reveal complex structures in both the vertical and horizontal distribution of phytoplankton in the mixed layer providing a valuable new tool to support other remote sensing techniques for studying mixed layer dynamics. Our results identify fronts at the periphery of mesoscale eddies as locations of abrupt changes in near-surface optical properties.

Phytoplankton division rate (μ), loss rate (l), and specific accumulation rate (r) were calculated using Chlorophyll-a (Chl) and phytoplankton carbon (Cphyto) derived from bio-optical measurements on 12 Argo profiling floats in a north-south section of the western North Atlantic Ocean (40° N to 60° N). The float results were used to quantify the seasonal phytoplankton phenology and bloom dynamics for the region. Latitudinally varying phytoplankton dynamics were observed. In the north, the CPhyto peak was higher, occurred later, and was accompanied by higher total annual CPhyto accumulation. In contrast, in the south, stronger μ-r decoupling occurred despite smaller seasonal variations in mixed layer depth (suggesting the possibility of other ecological forcing), and was accompanied by an increasing portion of winter to total annual production, consistent with relief of nutrient limitation. The float observations of phytoplankton phenology for the mixed layer were compared to ocean color satellite remote sensing observations and found to be similar. A similar comparison to an eddy-resolving ocean simulation found the model only reproduced some aspects of the observed phytoplankton phenology, indicating possible biases in the simulated physical forcing, turbulent dynamics, and bio-physical interactions. In addition to seasonal patterns in the mixed layer, the float measurements provided information on the vertical distribution of physical and biogeochemical quantities and therefore are complementary to the remote sensing measurements. Seasonal phenology patterns arise from interactions between “bottom-up” (e.g., resources for growth) and “top-down” (e.g., grazing, mortality) factors that involve both biological and physical drivers. The Argo float data are consistent with the disturbance recovery hypothesis over the full, annual seasonal cycle; for the late winter/early spring transition, the float data are also consistent with other bloom hypotheses (e.g., critical photosynthesis, critical division rate, and meso/sub-mesoscale physics) that highlight the importance of brief, episodic boundary layer shoaling for decoupling of division and grazing rates.

The North Atlantic Aerosols and Marine Ecosystems Study (NAAMES) is an interdisciplinary investigation to improve understanding of Earth's ocean ecosystem-aerosol-cloud system. Specific overarching science objectives for NAAMES are to (1) characterize plankton ecosystem properties during primary phases of the annual cycle and their dependence on environmental forcings, (2) determine how these phases interact to recreate each year the conditions for an annual plankton bloom, and (3) resolve how remote marine aerosols and boundary layer clouds are influenced by plankton ecosystems. Four NAAMES field campaigns were conducted in the western subarctic Atlantic between November 2015 and April 2018, with each campaign targeting specific seasonal events in the annual plankton cycle. A broad diversity of measurements were collected during each campaign, including ship, aircraft, autonomous float and drifter, and satellite observations. Here, we present an overview of NAAMES science motives, experimental design, and measurements. We then briefly describe conditions and accomplishments during each of the four field campaigns and provide information on how to access NAAMES data. The intent of this manuscript is to familiarize the broad scientific community with NAAMES and to provide a common reference overview of the project for upcoming publications.

Chlorophyll a fluorometry has long been used as a method to study phytoplankton in the ocean. In situ fluorometry is used frequently in oceanography to provide depth-resolved estimates of phytoplankton biomass. However, the high price of commercially manufactured in situ fluorometers has made them unavailable to some individuals and institutions. Presented here is an investigation into building an in situ fluorometer using low cost electronics. The goal was to construct an easily reproducible in situ fluorometer from simple and widely available electronic components. The simplicity and modest cost of the sensor makes it valuable to students and professionals alike. Open source sharing of architecture and software will allow students to reconstruct and customize the sensor on a small budget. Research applications that require numerous in situ fluorometers or expendable fluorometers can also benefit from this study. The sensor costs US$150.00 and can be constructed with little to no previous experience. The sensor uses a blue LED to excite chlorophyll a and measures fluorescence using a silicon photodiode. The sensor is controlled by an Arduino microcontroller that also serves as a data logger.

Measurements in San Bernardino Strait, one of two major connections between the Pacific Ocean and the interior waters of the Philippine Archipelago, captured 2–3 m s-1 tidal currents that drove vertical mixing and net landward transport. A TRIAXUS towed profiling vehicle equipped with physical and optical sensors was used to repeatedly map subregions within the strait, employing survey patterns designed to resolve tidal variability of physical and optical properties. Strong flow over the sill between Luzon and Capul islands resulted in upward transport and mixing of deeper high-salinity, low-oxygen, high-particle-and-nutrient-concentration water into the upper water column, landward of the sill. During the high-velocity ebb flow, topography influences the vertical distribution of water, but without the diapycnal mixing observed during flood tide. The surveys captured a net landward flux of water through the narrowest part of the strait. The tidally varying velocities contribute to strong vertical transport and diapycnal mixing of the deeper water into the upper layer, contributing to the observed higher phytoplankton biomass within the interior of the strait.

Chemical and biological sensor technologies have advanced rapidly in the past five years. Sensors that require low power and operate for multiple years are now available for oxygen, nitrate, and a variety of bio-optical properties that serve as proxies for important components of the carbon cycle (e.g., particulate organic carbon). These sensors have all been deployed successfully for long periods, in some cases more than three years, on platforms such as profiling floats or gliders. Technologies for pH, pCO2, and particulate inorganic carbon are maturing rapidly as well. These sensors could serve as the enabling technology for a global biogeochemical observing system that might operate on a scale comparable to the current Argo array. Here, we review the scientific motivation and the prospects for a global observing system for ocean biogeochemistry.