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3 results on '"Epithemia pelagica strain UHM3201"'

1. The genome sequences of the marine diatom Epithemia pelagica strain UHM3201 (Schvarcz, Stancheva & Steward, 2022) and its nitrogen-fixing, endosymbiotic cyanobacterium.

Author

Schvarcz, Christopher, Stancheva, Rosalina, Turk-Kubo, Kendra, Wilson, Samuel, Zehr, Jonathan, Edwards, Kyle, Steward, Grieg, Archibald, John, Oatley, Graeme, Sinclair, Elizabeth, Santos, Camilla, Paulini, Michael, Aunin, Eerik, Gettle, Noah, Niu, Haoyu, McKenna, Victoria, and OBrien, Rebecca

Subjects
Epithemia pelagica strain UHM3201, Rhopalodiales, chromosomal, cyanobacterial endosymbiont, genome sequence, pennate diatom
Abstract

We present the genome assembly of the pennate diatom Epithemia pelagica strain UHM3201 (Ochrophyta; Bacillariophyceae; Rhopalodiales; Rhopalodiaceae) and that of its cyanobacterial endosymbiont (Chroococcales: Aphanothecaceae). The genome sequence of the diatom is 60.3 megabases in span, and the cyanobacterial genome has a length of 2.48 megabases. Most of the diatom nuclear genome assembly is scaffolded into 15 chromosomal pseudomolecules. The organelle genomes have also been assembled, with the mitochondrial genome 40.08 kilobases and the plastid genome 130.75 kilobases in length. A number of other prokaryote MAGs were also assembled.

Published
2024

2. The genome sequences of the marine diatom Epithemia pelagica strain UHM3201 (Schvarcz, Stancheva & Steward, 2022) and its nitrogen-fixing, endosymbiotic cyanobacterium [version 1; peer review: 2 approved]

Author

Christopher R. Schvarcz, Eerik Aunin, Kendra A. Turk-Kubo, Rosalina Stancheva, Jonathan P. Zehr, Victoria McKenna, Samuel T. Wilson, Grieg F. Steward, Kyle F. Edwards, John M. Archibald, Elizabeth Sinclair, Graeme Oatley, Camilla Santos, Noah Gettle, Haoyu Niu, Michael Paulini, and Rebecca O’Brien

Subjects
Epithemia pelagica strain UHM3201, cyanobacterial endosymbiont, pennate diatom, genome sequence, chromosomal, Rhopalodiales, eng, Medicine, Science
Abstract

We present the genome assembly of the pennate diatom Epithemia pelagica strain UHM3201 (Ochrophyta; Bacillariophyceae; Rhopalodiales; Rhopalodiaceae) and that of its cyanobacterial endosymbiont (Chroococcales: Aphanothecaceae). The genome sequence of the diatom is 60.3 megabases in span, and the cyanobacterial genome has a length of 2.48 megabases. Most of the diatom nuclear genome assembly is scaffolded into 15 chromosomal pseudomolecules. The organelle genomes have also been assembled, with the mitochondrial genome 40.08 kilobases and the plastid genome 130.75 kilobases in length. A number of other prokaryote MAGs were also assembled.

Published
2024
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3. The genome sequences of the marine diatom Epithemia pelagica strain UHM3201 (Schvarcz, Stancheva & Steward, 2022) and its nitrogen-fixing, endosymbiotic cyanobacterium.

Author

Schvarcz CR, Stancheva R, Turk-Kubo KA, Wilson ST, Zehr JP, Edwards KF, Steward GF, Archibald JM, Oatley G, Sinclair E, Santos C, Paulini M, Aunin E, Gettle N, Niu H, McKenna V, and O'Brien R

Abstract

We present the genome assembly of the pennate diatom Epithemia pelagica strain UHM3201 (Ochrophyta; Bacillariophyceae; Rhopalodiales; Rhopalodiaceae) and that of its cyanobacterial endosymbiont (Chroococcales: Aphanothecaceae). The genome sequence of the diatom is 60.3 megabases in span, and the cyanobacterial genome has a length of 2.48 megabases. Most of the diatom nuclear genome assembly is scaffolded into 15 chromosomal pseudomolecules. The organelle genomes have also been assembled, with the mitochondrial genome 40.08 kilobases and the plastid genome 130.75 kilobases in length. A number of other prokaryote MAGs were also assembled., Competing Interests: No competing interests were disclosed., (Copyright: © 2024 Schvarcz CR et al.)

Published
2024
Full Text
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