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Mixed fatty acid-modified aggregators have been developed as potential crude oil sorbents. Cheap pine wood flour was first modified with oleic acid (OA) and further modified with a second fatty acid by a leaving group chemistry, where a surface hydroxyl group is first replaced by p-toluenesulfonyl group and a fatty acid forms a covalent bond on sawdust surface through esterification at the elevated temperature (55 °C). Two OA-modified base materials, pine/OA-106 and pine/OA-124, with different OA-coverages were first prepared and the second fatty acids with C3, C6, C8, C10, C12, C14, or C16 alkyl chains were applied to cover the remaining surface hydroxyl groups. The crude oil sorption capacities of the mixed fatty acid-modified aggregators were studied and compared with those of the base materials. The results showed that mixed fatty acid-modified aggregators increased up to 45.6% more crude oil sorption than those of OA-modified base materials. A correlation between surface property and sorption capacity was studied by moisture sorption, Fourier transform infrared spectroscopy, X-ray diffraction, 13C cross polarization and magic angle spinning nuclear magnetic resonance, thermal gravimetric analysis, and scanning electron microscopy. To our knowledge, no report has been published for mixed fatty acid-modified herders or aggregators in the environmental remediation.

The accumulation of bacteria in surface-attached biofilms can be detrimental to human health, dental hygiene, and many industrial processes. Natural biofilms are soft and often transparent, and they have heterogeneous biological composition and structure over micro- and macroscales. As a result, it is challenging to quantify the spatial distribution and overall intensity of biofilms. In this work, a new method was developed to enhance the visibility and quantification of bacterial biofilms. First, broad-spectrum biomolecular staining was used to enhance the visibility of the cells, nucleic acids, and proteins that make up biofilms. Then, an image analysis algorithm was developed to objectively and quantitatively measure biofilm accumulation from digital photographs and results were compared to independent measurements of cell density. This new method was used to quantify the growth intensity of Pseudomonas putida biofilms as they grew over time. This method is simple and fast, and can quantify biofilm growth over a large area with approximately the same precision as the more laborious cell counting method. Stained and processed images facilitate assessment of spatial heterogeneity of a biofilm across a surface. This new approach to biofilm analysis could be applied in studies of natural, industrial, and environmental biofilms. Graphical abstract A novel photographic method was developed to quantify bacterial biofilms. Broad spectrum biomolecular staining enhanced the visibility of the biofilms. Image analysis objectively and quantitatively measured biofilm accumulation from digital photographs. When compared to independent measurements of cell density the new method accurately quantified growth of Pseudomonas putida biofilms as they grew over time. The graph shows a comparison of biofilm quantification from cell density and image analysis. Error bars show standard deviation from three independent samples. Inset photographs show effect of staining Electronic supplementary material The online version of this article (doi:10.1007/s00216-015-9195-z) contains supplementary material, which is available to authorized users.

Nanoscale sensing arrays utilizing the unique properties of the optical protein bacteriorhodopsin and colloidal semiconductor quantum dots are being developed for toxin detection applications. This paper describes an innovative method to activate bacteriorhodopsin-based electrodes with the optical output of quantum dots, producing an enhanced electrical response from the protein. Results show that the photonic emission of CdSe/ZnS quantum dots is absorbed by the bacteriorhodopsin retinal and initiates the proton pumping sequence, resulting in an electrical output from a bacteriorhodopsin-based electrode. It is also shown that activated quantum dots in sub-10 nm proximity to bacteriorhodopsin further amplify the photovoltaic response of the protein by approximately 23%, compared to without attached quantum dots, suggesting direct energy transfer mechanisms beyond photonic emission alone. The ability of quantum dots to activate nanoscale regions on bacteriorhodopsin-based electrodes could allow sub-micron sensing arrays to be created due to the ability to activate site-specific regions on the array.

Biofilms are organized structures composed mainly of cells and extracellular polymeric substances produced by the constituent microorganisms. Ubiquitous in nature, biofilms have an innate ability to capture and retain passing material and may therefore act as natural collectors of contaminants or signatures of upstream activities. To determine the persistence and detectability of DNA passing through a sink drain environment, Bacillus anthracis strain Ames35 was cultured (6.35 x 107 CFU/mL), sterilized, and disposed of by addition to a sink drain apparatus with an established biofilm. The sink drain apparatus was sampled before and for several days after the addition of the sterilized B. anthracis culture to detect the presence of B. anthracis DNA. Multiple PCR primer pairs were used to screen for chromosomal and plasmid DNA with primers targeting shorter sequences showing greater amplification efficiency and success. PCR amplification and detection of target sequences indicate persistence of chromosomal DNA and plasmid DNA in the biofilm for 5 or more and 14 or more days, respectively.

The unique energy transfer interaction between the optical Utilizing the direct energy transfer mechanism existing between semiconductor quantum dots and the hydrogen ion protein pump bacteriorhodopsin, a multi-functional bioelectronics platform is demonstrated. Fluorescence resonance energy transfer coupled QD-bR systems have been proven in both aqueous and dried film states, allowing for the vast QD optical absorbance range to directly contribute energy to the bR proton pumping sequence. A nanoscale deposition technique was employed to construct hybrid QD-bR electrodes capable of harnessing the FRET phenomena and enhancing the bR electrical output by nearly 300%. A biosensing prototype system was created where the target molecule disrupts the QD-bR FRET relationship and is signaled by an altered bR electrical output. With an integrated TiO 2 electron generating substrate, the QD-bR hybrid functions as a sensitizer in a thin film bio solar cell design, which will be presented in more detail at the conference and in the full paper.

Harnessing the energy transfer interactions between the optical protein bacteriorhodopsin (bR) and CdSe/ZnS quantum dots (QDs) could provide a novel bio-nano electronics substrate with a variety of applications. In the present study, a polydimethyldiallyammonium chloride based I-SAM technique has been utilized to produce bilayers, trilayers and multilayers of alternating monolayers of bR, PDAC and QD's on a conductive ITO substrate. The construction of multilayer systems was directly monitored by measuring the unique A570 nm absorbance of bR, as well as QD fluorescence emission. Both of these parameters displayed a linear relationship to the number of monolayers present on the ITO substrate. The photovoltaic response of bilayers of bR/PDAC was observed over a range of 3 to 12 bilayers and the ability to efficiently create an electrically active multilayered substrate composed of bR and QDs has been demonstrated for the first time. Evaluation of QD fluorescence emission in the multilayer system strongly suggests that FRET coupling is occurring and, since the I-SAM technique provide a means to control the bR/QD separation distance on the nanometer scale, this technique may prove highly valuable for optimizing the distance dependent energy transfer effects for maximum sensitivity to target molecule binding by a biosensor. Finally, preliminary studies on the production of a sensor protein/bR hybrid gene construct are presented. It is proposed that the energy associated with target molecule binding to a hybrid sensor protein would provide a means to directly modulate the electrical output from a sensor protein/bR biosensor platform.

Nanoscale sensing arrays utilizing the unique properties of the optical protein bacteriorhodopsin and colloidal semiconductor quantum dots are being developed to detect minute concentrations of airborne toxins. This paper describes an innovative method to activate bacteriorhodopsin-based sensors with the optical output of quantum dots, producing a measurable electrical response from the protein. The ability of quantum dots to activate nanoscale regions on bacteriorhodopsin-based electrodes allows sub-micron sensing arrays to be created due to the ability to activate site-specific regions on the array. A novel method to modulate the sensor's electrical output to obtain both "on" and "off" states is also achieved utilizing the fluorescence resonance energy transfer characteristics of a bacteriorhodopsin/quantum dot system. Apart from applying this technology to toxin detection arrays, the ability to readily manipulate the protein's electrical and optical characteristics could have implications in other areas of nanobiotronics.