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Cholera remains a heavy burden worldwide, especially in Sub-Saharan African countries, which account for the majority of the reported cases on the continent. In this study, a 27-year retrospective analysis of cholera epidemics in Guinea-Bissau was performed in order to highlight major stressors fueling the trigger and dissemination of the disease. Although the role of environmental factors did not always have the same degree of importance for the onset of epidemics, a cholera seasonal pattern was clearly perceived, with most of the reported cases occurring during the wet season. The generated theoretical hypothesis indicated rainfall above climatological average, associated with a lack of WASH (water, sanitation and hygiene) infrastructure, and the occurrence of concomitant epidemics in neighboring countries as the key indicators for optimal conditions for cholera to thrive in Guinea-Bissau. Warmer air temperature, the increase in sea surface temperature, and the decrease in salinity in the coastal areas may also contribute to the emergence and/or aggravation of cholera events. Prediction of the conditions favorable for cholera growth and identification of risk pathways will allow the timely allocation of resources, and support the development of alert tools and mitigation strategies.

Habitat structure and complexity influence the structuring and functioning of fish communities. Habitat changes are one of the main pressures affecting estuarine systems worldwide, yet the degree and rate of change and its impact on fish communities is still poorly understood. In order to quantify historical modifications in habitat structure, an ecohydrological classification system using physiotopes, i.e. units with homogenous abiotic characteristics, was developed for the lower Lima estuary (NW Portugal). Field data, aerial imagery, historical maps and interpolation methods were used to map input variables, including bathymetry, substratum (hard/soft), sediment composition, hydrodynamics (current velocity) and vegetation coverage. Physiotopes were then mapped for the years of 1933 and 2013 and the areas lost and gained over the 80 years were quantified. The implications of changes for the benthic and demersal fish communities using the lower estuary were estimated using the attractiveness to those communities of each physiotope, while considering the main estuarine habitat functions for fish, namely spawning, nursery, feeding and refuge areas and migratory routes. The lower estuary was highly affected due to urbanisation and development and, following a port/harbour expansion, its boundary moved seaward causing an increase in total area. Modifications led to the loss of most of its sandy and saltmarsh intertidal physiotopes, which were replaced by deeper subtidal physiotopes. The most attractive physiotopes for fish (defined as the way in which they supported the fish ecological features) decreased in area while less attractive ones increased, producing an overall lower attractiveness of the studied area in 2013 compared to 1933. The implications of habitat alterations for the fish using the estuary include potential changes in the nursery carrying capacity and the functioning of the fish community. The study also highlighted the poor knowledge of the impacts of habitat changes on fish due to coastal development and urbanisation and emphasises that ecosystem management and conservation will benefit from a wider understanding of habitat functional roles and habitat changes influencing the functioning and structure of the fish communities.

Connectivity between coastal spawning grounds and estuarine nurseries is a critical step in the life cycle of many fish species. Larval immigration and transport-associated physical–biological processes are determinants of recruitment success to nursery areas. The recruitment of the European flounder, Platichthys flesus, to estuarine nurseries located at the southern edge of the species distribution range, has been usually investigated during its juvenile stages, while estuarine recruitment during the earlier planktonic life stage remains largely unstudied. The present study investigated the patterns of flounder larval recruitment and the influence of environmental factors on the immigration of the early life stages to the Lima estuary (NW Portugal), integrating data on fish larvae and post-settlement individuals (< 50 mm length), collected over 7 years. Late-stage larvae arrived at the estuary between February and July and peak abundances were observed in April. Post-settlement individuals (< 50 mm) occurred later between April and October, whereas newly-settled ones (< 20 mm) were found only in May and June. Variables associated with the spawning, survival and growth of larvae in the ocean (sea surface temperature, chlorophyll a and inland hydrological variables) were the major drivers of flounder occurrence in the estuarine nursery. Although the adjacent coastal area is characterized by a current system with strong seasonality and mesoscale variability, we did not identify any influence of variables related with physical processes (currents and upwelling) on the occurrence of early life stages in the estuary. A wider knowledge on the influence of the coastal circulation variability and its associated effects upon ocean-estuarine connectivity is required to improve our understanding of the population dynamics of marine spawning fish that use estuarine nurseries.

The microbiological quality of bathing waters is a fundamental concern for the use of bathing areas. Although the present European Bathing Directive (2006/7/EC) broke new ground in what monitoring, harmonized methods and practices of analysis are concerned, several questions remain unanswered. This study investigated the variation of fecal indicator bacteria of an urban beach area at different spatial and temporal scales. Intensive hourly and spatial sampling was conducted during the most crowded months of the bathing season in order to identify major pollution sources and their influence on the bathing water quality. Temporal variations explained approximately 76% of the overall variability, emphasizing the importance of sample retrieval timing, but also regional events in obtaining reliable results. Although spatial variation explained only 24% of the total variability, it highlighted the fact that the physical and hydrodynamic characteristics of adjacent beach areas, as well as the magnitude of various local inputs also may decisively influence the overall water quality. As a result, small-scale variations of water quality should be identified and accounted when designing the bathing water profiles required by the Directive 2006/7/EC. In order to reduce the public health threats posed by pollution events, water monitoring programs should be planned to be beach specific, especially in areas where these events are more likely to occur.

A major goal of current environmental policies is to preserve or return areas to a good ecological status, which should be assessed at the ecosystem level, using several biological elements, together with physical, chemical and pollution elements. This study investigated the use of early life stages of fishes as indicators of estuarine ecosystem condition, testing the hypothesis that estuaries with different human impacts would carry distinct larval and juvenile fish assemblages. We used two estuaries as models, the Ave and Cavado (NW Portugal) that have similar geomorphologies but are submitted to different human pressures. Surveys were conducted during spring and autumn 2009, and included the collection of larval and juvenile stages of fishes, together with the physical and chemical characterization of water and sediments. Several indicators of human pressure, namely sewage contamination and toxicology of water were assayed. Physical and chemical water characteristics did not vary between the two estuaries and exhibited a similar seasonal trend. However, during autumn, atypical freshet conditions were observed in the Cavado as a result of increased precipitation and river flow, illustrating hydrological pressures. Despite this, the Cavado with unmodified banks, lower nutrient load, organic matter and sewage contamination appeared less impacted than the Ave. Although the abundance and diversity were similar, the structure of larval fish assemblages varied between the two estuaries. Marine species dominated the Ave larval assemblages, while in the Cavado resident species were the most abundant taxa. Juvenile fish assemblages were more abundant and diverse in the Cavado, with a total of thirteen species against the eight species observed in the Ave. The Cavado larval and juvenile fish assemblages comprised more functional guilds than in the Ave estuary. The marine species Solea senegalensis and Dicentrarchus labrax were identified as responsible for the major differences in larval and juvenile fish assemblages, respectively. In the case of species that were simultaneously present during larval and juvenile phases, only two resident species were observed in the Ave, while five species were observed in the Cavado, including resident and marine juveniles. Thus, early life stages of fishes were indicative of a better ecological condition and environmental status of the Cavado estuary, which is less impacted and has a lower pollution level than the Ave estuary. The present study reinforced the idea that larval and juvenile stages of fishes can be useful tools for the assessment of ecological condition status of transitional waters especially in estuaries noted for their nursery function.

According to the Water Framework Directive (WFD) transitional waters should be differentiated according to type and, in some cases, divided into different water bodies. This raises a dilemma in trying to define parts of a continuum. In the sequence of WFD several indices have been proposed including the Estuarine Fish Assessment Index, which can be applied taking an estuary as a whole (EFAI - without water bodies division) or divided in water bodies (EFAI(WB)). The purpose of this work is to analyze the robustness of the Estuarine Fish Assessment Index, based on three different ways of dividing Portuguese estuaries into water bodies according to different criteria (criterion 1 - distance to the estuary mouth, criterion 2 - salinity and criterion 3 - morphology, salinity and human dimension as pressure and state). In this study we evaluated at which degree these three criteria could influence the ecological quality ratio (EQR) results, when the index was applied to water body level (EFAI(WB)). Also, for each estuary, the EQR(WB) results for each criterion of EFAI(WB) were combined and weighted according to the water bodies areas (EFAI overall weighted - EFAI(Ow)). Finally, it was compared if the results obtained for each criterion with the EFAI(OW) were similar to the results of the index application taking the estuary as a whole (EFAI without water bodies division). No significant differences were found in both cases, which indicated that this index is a robust method regarding the division of the estuaries in different water bodies, which is an important element of a fish-based multimetric tool for assessing estuarine ecological quality. However, in some cases, different ecological quality statuses were achieved when applying the EFAI(Ow) or the EFAI. This work addressed several aspects regarding the possible division of water bodies at the WFD context. (C) 2012 Elsevier Ltd. All rights reserved.

The assessment of water quality has changed markedly worldwide over the last years, especially in Europe due to the implementation of the Water Framework Directive. Fish was considered a key-element in this context and several fish-based multi-metric indices have been proposed. In this study, we propose a multi-metric index, the Estuarine Fish Assessment Index (EFAI), developed for Portuguese estuaries, designed for the overall assessment of transitional waters, which could also be applied at the water body level within an estuary. The EFAI integrates seven metrics: species richness, percentage of marine migrants, number of species and abundance of estuarine resident species, number of species and abundance of piscivorous species, status of diadromous species, status of introduced species and status of disturbance sensitive species. Fish sampling surveys were conducted in 2006, 2009 and 2010, using beam trawl, in 13 estuarine systems along the Portuguese coast. Most of the metrics presented a high variability among the transitional systems surveyed. According to the EFAI values, Portuguese estuaries presented a "Good" water quality status (except the Douro in a particular year). The assessments in different years were generally concordant, with a few exceptions. The relationship between the EFAI and the Anthropogenic Pressure Index (API) was not significant, but a negative and significant correlation was registered between the EFAI and the expert judgement pressure index, at both estuary and water body level. The ordination analysis performed to evaluate similarities among North-East Atlantic Geographical Intercalibration Group (NEAGIG) fish-based indices put in evidence four main groups: the French index, since it is substantially different from all the other indices (uses only four metrics based on densities); indices from Ireland, United Kingdom and Spain (Asturias and Cantabria); the Dutch and German indices; and the indices of Belgium. Portugal and Spain (Basque country). The need for detailed studies, including comparative approaches, on several aspects of these assessment tools, especially in what regards their response to anthropogenic pressures was stressed. (C) 2011 Elsevier Ltd. All rights reserved.

Sound tubes, pipes, and singing rods are used as musical instruments and as toys to perform amusing experiments. In particular, corrugated tubes present unique characteristics with respect to the sounds they can produce; that is why they have been studied so intensively, both at theoretical and experimental levels.1–4 Experimental studies usually involve expensive and sophisticated equipment that is out of reach of school laboratory facilities.3–6 In this paper we show how to investigate quantitatively the sounds produced by a flexible sound tube corrugated on the inside by using educational equipment readily available in school laboratories, such as the oscilloscope, the microphone, the anemometer, and the air pump. We show that it is possible for students to study the discontinuous spectrum of sounds produced by a flexible corrugated tube and go even further, computing the speed of sound in air with a simple experimental procedure.