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Cocoa pod-opening delay and bean fermentation promote the organoleptic quality of chocolate. The present research investigated the changes in the volatile fingerprint of cocoa harvested at a traditional plantation. Cocoa beans extracted from 2-days pod-opening delay were simultaneously fermented for 5 days using container and then sun-dried to 7-8% moisture content at five different locations: Akoupé, San Pedro, Soubré, Djekanou and Daloa. The aromatic analysis were done on cocoa using the HS-SPME-GC/MS technique. Professional panelists evaluated the sensory perceptions of the chocolate. The results shows that cocoa fermented in both Daloa and Soubré regions were differentiated by 2,3-butanediol while those processed in other regions presented highest acetoin content. However, fermented cocoa from Soubré region exhibited most amount of 2,3-butanediol, diacetate A whereas 2,3,5,6-tetramethylpyrazine differentiated those from Daloa region. Sensory properties of chocolate were not linked to the aromatic compound precursors profile of beans. The fermentation performed in San Pédro region promote both the generation of more desirable aromatic compounds of cocoa and sensory attributes of the finished chocolate. The fermentation location generates a greater differentiation of the volatile fingerprint of cocoa and the sensory perceptions of the finished chocolate.

Given the persistent poor livelihood of cocoa-farming households, future climate predictions and the worldwide demand pressure for higher cocoa quality and productivity, there is still a strong need to find new approaches that guarantee a sustainable cocoa future in cocoa-producing countries amongst which Cameroon is one of them. This exploratory research investigates potential future pathways for the cocoa sector in Cameroon by mapping the perceptions of actors involved in the socio-technical regime. Qualitative expert interviews, structured questionnaires and field observation, as well as a focus group discussion have been applied to understand how a sustainability transition can be triggered. The study shows that actors envisage a sustainability change which determines their actions; however, their perceptions towards future transitions are not actively coordinated. Actors are not finding a way of adopting new organizational structures and letting a transition occur effectively, like in the case of certification standards. An alignment of perceptions and activities, and a stronger cooperation between the private and public are strongly recommended. The study encourages to consider a coordination of actors' perceptions towards future scenarios as a starting point to study sustainability transitions.

Cocoa quality depends on several parameters, such as cocoa variety, environmental growth conditions, cultivation technique, and post-harvest treatments applied to coca beans. In this work, we studied the impact of cocoa post-harvest processing on both microbial communities structure and volatile composition. Cocoa beans samples were fermented in wooden boxes in Ivory Coast at different time intervals with turning and without turning, and derived from pods stored for two different duration times. Cocoa beans were analyzed using a molecular fingerprinting method (PCR-DGGE) in order to detect variations in microbial communities' structure; this global analysis was coupled to SPME-GC-MS for assessing cocoa volatile profiles. The results showed that the main parameter that influenced microbial communities structure was fermentation time, followed by turning, whereas, pods storage duration had a minor impact. Similar results were obtained for aromatic profile, except for pods storage duration that significantly affected volatile compound production. Global statistical analysis using Canonical Correspondence Analysis (CCA), showed the relationship between microbial communities and volatile composition. Furthermore, this study allowed the identification of discriminating microbial and chemical markers of cocoa post-harvest processing.

The aromatic quality of chocolate requires the use of cocoa with high aromatic potential, this being acquired during the fermentation of cocoa beans. Traditional fermentation is still often carried out on a small scale with wild strains of yeasts and acetic bacteria and under poorly controlled conditions leading to cocoa quality ranging from best to worst. This study is the first part of a project aiming to control quality of cocoa to produce high aromatic quality chocolate by using a mixed starter of selected strains of yeast and acetic bacteria and by controlling the conditions of fermentation. To achieve this objective, a mathematical model of the alcoholic fermentation of cocoa beans has been developed. The growth, glucose consumption and ethanol production of Saccharomyces cerevisiae LM strain in synthetic broth were modeled for the most important intrinsic (pH, glucose, ethanol, free nitrogen and oxygen levels) and extrinsic (temperature, oxygen level) fermentation parameters. The model was developed by combining the effects of individual conditions in a multiplicative way using the gamma concept. The model was validated in liquid synthetic medium at two different inoculation levels 104 and 106 CFU/mL with an increase in temperature that recorded during spontaneous fermentations. The model clearly shows that the level of inoculation and the speed of the increase in temperature clearly drive yeast growth, while other factors including pH and ethanol, free nitrogen and oxygen levels have no significant impact on yeast growth.

Despite the importance of fermentation for cocoa quality, process parameters are not controlled under spontaneous conditions at farms. This study evaluates the influence of spontaneous fermentation and processing under laboratory-controlled conditions using the acidic reagents acetic and lactic acids on the cocoa quality of two cultivars, FEAR 5 and CCN 51, at the sensory and metabolomic levels. Under spontaneous conditions, cocoa differs in flavour quality. While FEAR 5 produces chocolate with good global quality, chocolate made with CCN 51 does not have outstanding quality attributes. Transformation under controlled conditions with acidic reagents increases the perception of fine aromatic notes such as fruity, nutty and floral attributes in chocolates made from both cultivars of cocoa. Metabolomic profiles allowed grouping of cocoa samples as a function of postharvest treatment. Twenty-five differential metabolites were identified during the postharvest processes, and these metabolites may be related to the expression of fine sensory attributes; however, more research is needed.

A simple, fast and ecological analytical method using a semi-automatic fat extractor and HPLC-FLD (fluorescence detection) for determination of polycyclic aromatic hydrocarbon markers i.e. benzo(a)anthracene (BaA), chrysene (Chr), benzo(a)pyrene (BaP) and benzo(b)fluoranthene (BbF) in cocoa butter has been validated. Validation's procedure performed out in concordance with French standard NF V03-110 (2010) was based on existing polycyclic aromatic hydrocarbon (PAH) determination methods in various smoked foodstuffs and edible vegetable oils. Determination of correlation coefficients for specific PAHs ranged from 0.9992 to 0.9998. Respective values of limits of detection were 0.010, 0.011, 0.033 and 0.029 μg kg−1 and those of quantification were 0.035, 0.038, 0.111 and 0.098 μg kg−1 for BaA, Chr, BbF and BaP. Both values of repeatability and intermediary precision tests coefficients of variation were less than 5%. Recovery scores of four PAH markers matched EU standard 836/2011 recommendations. Sum of four PAH markers (BaA, Chr, BbF, BaP) contents varied from 5.42 ± 0.58 to 11.37 ± 0.01 μg kg−1 whereas those of BaP was comprised between 0.26 ± 0.00 and 1.75 ± 0.13 μg kg−1 in 20 cocoa butter samples extracted from raw cocoa bean stored at Ivorian cocoa farmer levels.

The fine flavor cocoa (FFC) market offers cocoa farmers better monetary and nonmonetary benefits than the bulk market. In this work, during cocoa fermentation, flavor formation was studied at different fermentation times based on sensory profiles, volatile compound contents and untargeted metabolomics. It was observed that chocolate quality is influenced by fermentation time. Thus, at 72 h, the sensory profiles showed no outstanding attributes, while at 96 h, the global quality presented a stronger influence of fine attributes, such as fruitiness, florality, spices and nuttiness. Finally, at 120/144 h, these FFC features diminished. Metabolomic fingerprint of cocoa beans (related to peptides, sugars, amino acids, and phenolic compounds) and the volatile fingerprint of chocolate showed a change according to the fermentation time. This allowed the proposal of 96 h as the optimal fermentation time to produce FFC beans. Additionally, 20 volatiles and 48 discriminating metabolites were defined as potential quality biomarkers.

International audience; The present study aims at developing an analytical methodology which allows correlating sensory poles of chocolate to their chemical characteristics and, eventually, to those of the cocoa beans used for its preparation. Trained panelists investigated several samples of chocolate, and they divided them into four sensorial poles (characterized by 36 different descriptors) attributable to chocolate flavor. The same samples were analyzed by six different techniques: Proton Transfer Reaction-Time of Flight-Mass Spectrometry (PTR-ToF-MS), Solid Phase Micro Extraction-Gas Chromatography-Mass Spectroscopy (SPME-GC-MS), High-Performance Liquid Chromatography (HPLC) (for the quantification of eight organic acids), Ultra High Performance Liquid Chromatography coupled to triple-quadrupole Mass Spectrometry (UHPLC-QqQ-MS) for polyphenol quantification, 3D front face fluorescence Spectroscopy and Near Infrared Spectroscopy (NIRS). A multi-block classification approach (Sequential and Orthogonalized-Partial Least Squares – SO-PLS) has been used, in order to exploit the chemical information to predict the sensorial poles of samples. Among thirty-one test samples, only two were misclassified.

The selection of fine flavour cocoa and coffee varieties can lead to attractive niche markets but germplasm need to be analysed for non-volatile compounds and aroma precursors. In the present study, green beans of 202 Theobroma cacao L. accessions (acc.), 64 Coffea arabica L. acc., 35 C. canephora Pierre ex A. Froehner, 7 C. arabusta Capot & Ake Assi and 2 C. canephora × C. congensis A. Froehner hybrids cultivated in Santo, Vanuatu, and harvested at full maturity, were analysed using High Performance Thin Layer Chromatography (HPTLC). In cocoa, 11 compounds were quantified: two alkaloids, two catechins, five proanthocyanidins, and two anthocyanins. Multivariate analyses revealed that Amenolado acc. are differentiated from Criollo, Forastero and Trinitario acc. due to their low caffeine, catechins, and proanthocyanidins contents. Hybrids involving an Amenolado parent also produce low non-volatile compounds contents. In coffee, 11 compounds were quantified: sucrose, two alkaloids, and eight chlorogenic acids. The two major species were differentiated by their mean caffeine content (12.69 mg/g in C. arabica vs. 16.04 mg/g in C. canephora), which is highly correlated with CGA and other chlorogenic acids. Each of the eight chlorogenic acids presented higher values in C. canephora. The ratio sucrose/alkaloids + chlorogenic acids was significantly higher in C. arabica (3.24) than in C. canephora (1.68) which could be an explanation for its comparative sweetness. Coffea arabusta interspecific hybrids presented an intermediate value (2.64). Congusta hybrids were low in sucrose. HPTLC is a cost-efficient technique when applied to germplasm characterization of non-volatile compounds in green cocoa and coffee beans. Chemotype selection appears promising for the development of fine flavor varieties.

The average weight of cocoa beans is not generally taken into account during breeding processes, although it is a trait of interest. Several studies indicate that the weight of the beans has a high heritability in Theobroma cacao. However, the values obtained from different countries for the same clone often vary. In this study, we analyzed the effect of different factors on the weight of the beans. Apart from the clone effect, three main factors had an impact: i) the number of beans per pod: a good filling of the pod with beans tended to limit the weight of the beans, ii) the position of the beans in the pod: beans in the apical part of the pod were significantly lighter than the others and iii) the longer the duration of the fructification cycle the heavier the beans were (positive genetics correlation). These results lead us to propose protocols aimed at normalizing the phenotypic values of the genetic material. To obtain a reliable estimate of the bean weight, the following is proposed: either to use beans obtained from manual pollination to saturate the pods with beans, or to systematically use the number beans in the pods as a covariable.

A large fraction of the South-American cacao production is affected by new cadmium (Cd) regulations in cacao. This work was set up to characterize the distribution and speciation of Cd within the cacao fruit and to monitor potential Cd redistribution during cacao fermentation. In cacao fruits from four locations, Cd concentrations decreased with testa > nib ~ placenta ~ pod husk > mucilage. The distribution of Cd within cacao beans was successfully visualized using laser ablation inductively coupled plasma spectrometry (LA-ICP-MS) and confirmed higher Cd concentrations in the testa than in the nib. Speciation analysis by X-ray absorption spectroscopy (XANES) of unfermented cacao beans revealed that Cd was bound to O/N-ligands in both nib and testa. Fermentation induced an outward Cd migration from the nibs to the testa, i.e. against the total concentration gradient. This migration occurred only if the fermentation was sufficiently extensive to decrease the pH in the nib to

Chocolate is a widely consumed product worldwide due to its exquisite flavor, which comes from the unique and fascinating cocoa flavor. This flavor depends on little controllable variables such as the genotype and the agroecological niche, and on the other side, on postharvest operations: (1) cocoa transformation from seeds to beans that comprises cocoa seeds preconditioning, fermentation, and drying, and (2) the production of chocolate from the bean in which roasting is highlighted. Postharvest transformation operations are critically important because during these, cocoa flavor is formed, allowing the differentiation of two categories: bulk and specialty cocoa. In this sense, this article presents an overview of cocoa postharvest operations, the variables and phenomena that influence and control the physical and biochemical transformation from seeds to cocoa beans, and their relation to the formation of chocolate flavor. Moreover, research perspectives in terms of control and management of postharvest practices in order to obtain cocoa with differentiated and specialty characteristics "from bean to bar" are discussed.

Fermentation is a critical step in the processing of high quality cocoa; however, the biochemistry behind is still not well understood at a molecular level. In this research, using a non-targeted approach, the main metabolomic changes that occur throughout the fermentation process were explored. Genetically undefined cocoa varieties from Trinidad and Tobago (n = 3), Costa Rica (n = 1) and one clone IMC-67 (n = 3) were subjected to spontaneous fermentation using farm-based and pilot plant controlled conditions. Samples were collected daily, and acetone/water/acetic acid (70/29.5/0.5%) extracts were obtained and measured using a UPLC-ESI+-Q-Tof-MS system. Analysis of pre-processed data, applying a PLS-DA model, highlighted significant differences between the three fermentation periods, observed at 0–2, 3–4 and 5–6 days, respectively. Among the most discriminating metabolites, sucrose, flavanols such as (epi) catechin, procyanidin dimers and trimers, anthocyanins and oligopeptides ranging in size from 3 to 12 amino acids were tentatively identified. In general, flavanols and sugars tended to decrease throughout fermentation, whereas most oligopeptides increased to maximal levels after 3 to 4 days of fermentation and decreased thereafter. These results shed new insight into cocoa fermentation optimization strategies and may also contribute to the development of novel alternatives for cocoa processing based on biochemical and functional values. UCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Agroalimentarias::Centro Nacional de Ciencia y Tecnología de Alimentos (CITA)

According to the cocoa cycle model constructed over the four centuries of cocoa history, after a commodity boom in a region, there comes a recession. When the world price increases again, that region can benefit marginally or has at least to wait for a long period before rebounding; meanwhile, a new region takes over. The case of the Thai rubber economy with continuous, long-term growth shows that several factors—ecological (physiology of the crop), technical (high yielding planting material), political (strong support from public policy) and social (important role of local populations)—can explain some of the divergence from the cocoa cycle model. This suggests a need to update and enrich the model with new scenarios and options.

Les exigences europeennes sur la qualite du cacao conduisent au developpement de la certification, pour ameliorer la production et la gestion post-recolte des feves. Cependant, la certification reste peu developpee au Cameroun. Cet article mobilise le modele de la transition sociotechnique pour analyser les determinants d’adoption de la certification. Des entretiens aupres de 11 acteurs de la filiere cacao ont ete menes, ainsi qu’une enquete aupres de 90 producteurs. Les resultats mettent en exergue l’incompletude du systeme acteur de la certification, qui se traduit par sa faible diffusion. Cette tendance est accentuee par l’absence d’un differentiel de prix aux producteurs entre cacao certifie et cacao ordinaire. La conclusion interroge la capacite des normes de certification a transformer le secteur cacao.

Cocoa beans (Theobroma cocoa L.) are the main components for chocolate manufacturing. The beans must be correctly fermented at first. Traditional process to perform the first fermentation (lactic fermentation) often consists in confining cacao beans using banana leaves or a fermentation basket, both of them leading to a poor product thermal insulation and to an inability to mix the product. Box fermenter reduces this loss by using a wood with large thickness (e>3cm), but mixing to homogenize the product is still hard to perform. Automatic fermenters are not rentable for most of producers. Heat (T>45°C) and acidity produced during the fermentation by microbiology activity of yeasts and bacteria are enabling the emergence of potential flavor and taste of future chocolate. In this study, a cylindro-rotative fermenter (FCR-V1) has been built and coconut fibers were used in its structure to confine heat. An axis of rotation (360°) has been integrated to facilitate the turning and homogenization of beans in the fermenter. This axis permits to put fermenter in a vertical position during the anaerobic alcoholic phase of fermentation, and horizontally during acetic phase to take advantage of the mid height filling. For circulation of air flow during turning in acetic phase, two woven rattan with grid have been made, one for the top and second for the bottom of the fermenter. In order to reduce air flow during acetic phase, two airtight covers are put on each grid cover. The efficiency of the turning by this kind of rotation, coupled with homogenization of the temperature, caused by the horizontal position in the acetic phase of the fermenter, contribute to having a good proportion of well-fermented beans (83.23%). In addition, beans’pH values ranged between 4.5 and 5.5. These values are ideal for enzymatic activity in the production of the aromatic compounds inside beans. 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La OTA es una micotoxina producida por los géneros Aspergillus y Penicillium, la cual ha sido clasificada por la Agencia Internacional de Investigación para el Cáncer (IARC) como posible carcinógeno en humanos. La presencia de OTA y las especies de hongos que la producen, han sido asociadas a los tratamientos de cosecha y post-cosecha del cacao. Actualmente no existen reportes sobre las poblaciones microbianas presentes durante el beneficio de cacao en México y su interacción con la flora fúngica, por lo que el objetivo de este trabajo fue estudiar la dinámica de bacterias y levaduras y determinar su influencia sobre la presencia de hongos toxigénicos y la contaminación por OTA. Se obtuvieron muestras de mazorca y de grano de cacao durante el proceso de dos haciendas productoras (A y B) en 2013 y 2014. Se obtuvo el % total de infección por hongos, estos fueron aislados y caracterizados por biología molecular y su capacidad de producir OTA fue evaluada. Se realizó la extracción y la amplificación de ADN de las muestras de cacao por PCR, y se obtuvo el perfil DGGE de hongos. Se identificacron 59 cepas de hongos, de las cuales A. carbonarius, Penicillium sp., P. lividum, P. sizovae y A. steyni, resultaron altamente productoras de OTA (5141.05 - 14307.5 μg/kg). El cacao almacenado por 30 días presentó 304.6 μg de OTA/kg acorde con la presencia de especies aisl adas en esta etapa. Se mostró que lavar el grano al final de la fermentación en la hacienda B eliminó parcialmente la pulpa pegada al grano (sustrato disponible), disminuyendo la presencia de especies altamente ocratoxigénicas y el riesgo de contaminación por OTA en etapas posteriores. Los perfiles DGGE mostraron un mayor número de especies presentes 2 en el proceso de la hacienda B. La calidad de la materia prima, la etapa final de la fermentación y el almacenamiento fueron puntos críticos en la contaminación por hongos toxigénicos y producción de OTA. Este estudio permitió identificar los peligros y los puntos críticos de contaminación por OTA, precursores para la implementación de un sistema de Análisis de Riesgos y Puntos críticos de control (HACCP), para minimizar la contaminación en la cadena de producción de cacao.

Depuis plusieurs années, les programmes de recherche chez le cacaoyer ont mis l'accent sur l'étude des bases génétiques des caractères agronomiques d'intérêt, notamment concernant la résistance aux maladies et la qualité des fèves de cacao, qui représentent deux attributs importants pour la cacaoculture et la production de chocolat. Ce travail présente, par l'exploration du transcriptome et du génome du cacaoyer, la constitution de ressources moléculaires et l'analyse des voies de biosynthèse impliquées dans plusieurs de ces caractères agronomiques d'intérêt. L'étude du transcriptome a permis l'identification de plusieurs dizaines de milliers de gènes exprimés dans divers organes et pour différentes conditions environnementales et ont fourni de nombreux marqueurs moléculaires qui ont été utilisés pour réaliser des cartes génétiques haute densité. Les informations apportées par ce travail ont permis d'engager le séquençage du génome de la variété Criollo du cacaoyer. Son analyse et son annotation ont apporté un ensemble d'informations biologiques cruciales, depuis le catalogue des gènes et éléments mobiles jusqu'aux aspects évolutifs qui a révélé une structure du génome peu remanié par rapport à l'ancêtre commun aux dicotylédones. Par la suite, les travaux que nous avons menés pour améliorer la séquence complète ont conduit à une réduction considérable de la fragmentation chromosomique observée dans la première version. Par ailleurs 97% de la séquence assemblée et 99% des gènes sont désormais ancrés sur les chromosomes du cacaoyer. Pour commencer à exploiter cette nouvelle séquence du génome, nous avons conduit une étude QTL à partir d'une descendance entre Trinitario implantée en Guyane, permettant de localiser les régions génomiques impliquées dans la variation de la couleur des fèves de cacao. En s'appuyant sur la version améliorée du génome du Criollo, nous avons identifié deux gènes potentiellement impliqués dans la voie de biosynthèse des anthocyanines et flavonoïdes dans la principale région génomique concernée. Un des deux gènes, situé proche du marqueur situé au pic du QTL et codant pour une chalcone synthase, semble être un gène candidat prometteur. L'étude comparative de sa structure dans le génome du Criollo (à fève blanche) et du génome de l'Amelonado (à fève violette) a mis en évidence des différences structurales pouvant être à l'origine d'une modification fonctionnelle. L'ensemble des résultats présentés dans ce travail de thèse apporte une connaissance et des outils variés qui peuvent être exploités par de multiples approches intégrées pour étudier la génétique du cacaoyer.

Traditional fermented foods are not only the staple food for most of developing countries but also the key healthy food for developed countries. As the healthy functions of these foods are gradually discovered, more high throughput biotechnologies are being used to promote the fermented food industries. As a result, the microorganisms, process biochemistry, manufacturing, and down-streaming processing, as well as the bioactive metabolites released by the fermenting organisms and, above all, the healthy functions of these foods were extensively researched. The application and progress of biotechnology and biochemistry of traditional fermented food systems are different from each other, as the microorganisms and the food matrices vary widely. Part I (Biochemistry and Biotechnology) of this book (Fermented Foods) discusses the general aspects of biochemistry and biotechnological application of fermented foods involving acetic acid bacteria, lactic acid bacteria, ethanolic yeasts, and fungi in accelerating the many and variable functional factors in the fermented foods as well as metagenomics of fermented foods. The detailed technological interventions involved in different categories of fermented foods such as fermented cereals (bread and sourdough), fermented milk products (yogurt, cheese), fermented sausages, fermented vegetables (kimchi, sauerkraut), fermented legumes (tempeh, natto) and coffee and cocoa fermentations, and fermented beverages (animal- and plant-based) with their potential and actual health benefits, are discussed in Part II (Fermented Foods: Technological Interventions). (Resume d'auteur)

The roasting of green coffee beans ( Coffea arabica) artificially contaminated by Ochratoxin A (OTA) after inoculation with Aspergillus westerdijkiae was carried out with two different roasting techniques (Rotating Cylinder [RC] and Fluidized Bed [FB]). The green coffee beans were contaminated at two different toxin levels (L1 = 5.3 μg kg −1 and L2 = 57.2 μg kg −1 ). Different roasting points (light, medium, dark and very dark) were set according to the L ∗ color coordinate. The cylinder roasting conditions were 0, 3, 6, 9, 12, and 15 min at 230 °C and the fluidized bed roasting conditions were 0, 0.9, 1.7, 2.6, 3.5 and 4.3 min, at 230 °C. The roasted beans were compared for their physical properties (bean swell and weight loss) as well as for their residual OTA content. The results indicated that the OTA reduction was similar for the two contamination levels: 95.1% and 97.2% with the rotating cylinder and 81.3% and 79.2% with the fluidized bed at the maximal roasting time. The OTA degradation kinetics differed between the two processes. The complete degradation of OTA within the limit of this study (230 °C) was not observed but the rotating cylinder roasting was the most efficient technical process for the OTA reduction in a commercial dark roasted coffee (88%).

The effects of heat treatment on the survival of isolated Ephestia kuehniella Zeller larvae were examined. Larvae were treated in a specific device at a temperature range of 46 to 70 °C. Statistical analysis of the data demonstrated that the thermal survival kinetics was best represented by a 2-parameter Weibull model above 50 °C. The mortality of larvae only occurs beyond a critical temperature of 41.6 °C ± 2.5 °C. A 2D axial-symmetric model of heat transfer (convection, microwave at 915 MHz) was developed for cocoa bean and date palm. It was combined with the survival rate of larvae (Weibull model) and some z -values (from literature) are used for calculating a “food quality index” degradation kinetics. The intensive heating/convection process may not be adaptable for food products at low water activity due to high surface product temperatures. The use of microwave heating for date fruits and conventional hot air treatments for cocoa beans is recommended.

Ochratoxin A (OTA) is a mycotoxin that contaminates several foodstuffs, including cocoa. It has nephrotoxic, teratogenic and carcinogenic properties in humans. The effect of post-harvest processing and storage on the OTA contamination of cocoa was studied over three successive cocoa seasons (2005, 2006 and 2007) in Cameroon. The type of fermentation (box or heap) did not significantly influence bean OTA content, which varied from undetectable (

The selection of productive varieties of modern Criollo cocoa, showing fine aromatic qualities in their beans, is of major interest for some producing countries, such as Venezuela. Cultivated populations of Modern Criollo or Trinitario varieties may be suitable for admixture mapping analysis, as large blocks of alleles derived from two identified divergent ancestors, recently admixed, are still preserved, after a few generations of recombination, similar to experimental mapping progenies. Two hundred and fifty-seven individuals from a cultivated population of Modern Criollo were selected and analysed with 92 microsatellite markers distributed along the genome. This population exhibited a wide range of variability for yield factors and morphological features. Population structure analysis identified two main subgroups corresponding to the admixture from the two ancestors Criollo and Forastero. Several significant associations between markers and phenotypic data (yield factors and morphological traits) were identified by a least squares general linear model (GLM) taking into account the population structure and the percentage of admixture of each individual. Results were compared with classical QTL analyses previously reported for other cacao populations. Most markers associated to quantitative traits were very close to QTLs detected formerly for the same traits. Associations were also identified between markers and several qualitative traits including the red pigmentation observed in different organs, mainly associated to common markers in linkage group 4.

Cette étude se situe dans le cadre de l'amélioration de la qualité du cacao de Côte d'Ivoire. Elle s'est intéressée à l'impact des traitements technologiques post-récolte sur la contamination du cacao en ochratoxine A (OTA). Afin d'y parvenir, des investigations ont été menées selon quatre approches. La première a été relative à l'évaluation de l'influence de chaque traitement technologique post-récolte sur la qualité marchande et la production d'OTA dans le cacao. Ensuite, il s'agit de définir un itinéraire technologique post-récolte incluant les meilleures pratiques technologiques en vue de limiter la croissance fongique et la production d'OTA dans le cacao. La troisième approche a concerné l'identification des espèces fongiques en général notamment ochratoxinogènes associées au cacao en relation avec la technologie post-récolte. Enfin, nous nous sommes intéressés à l'étude des interactions entre Aspergillus carbonarius productrice d'OTA et Rhizopus qui ne l'est pas. Les résultats obtenus ont montré que les cabosses abîmées, les longs délais d'écabossage et la fermentation des fèves dans des caisses en plastique produisent des taux de fèves défectueuses et de fèves moisies élevés pouvant parfois atteindre 55,67±7,17%. La mesure de la teneur moyenne en OTA dans le cacao obtenu des cabosses abîmées, le cacao écabossé après 7 jours et le cacao fermenté dans des caisses en plastique a révélé des teneurs s en OTA de 4-10 μg.kg-1. En revanche, la durée de fermentation et le support de séchage présentent peu d'effet sur la contamination du cacao en OTA. Par ailleurs, la combinaison de longs délais d'écabossage et la fermentation du cacao dans des caisses en plastique ont eu un effet de cumul sur la production d'OTA. Les techniques de la microbiologie classique ont montré que les moisissures isolées appartiennent aux genres Aspergillus, Aureobasidium, Chrysonilia, Mucor, Penicillium et Rhizopus. Le genre Aspergillus constitue la mycoflore dominante avec huit espèces identifiées dont A. niger et A. carbonarius. Bien que les techniques moléculaires (PCR-DGGE) aient montré des différences dans la diversité fongique du cacao en fonction des traitements post-récolte avec un nombre supérieur d'espèces fongiques, les moisissures ochratoxinogènes identifiées sont similaires à celles détectées par la microbiologie classique. La mise en relation des traitements technologiques et la présence de ces souches avec la teneur en OTA du cacao montre deux interactions significatives dont l'une entre la présence d'A. carbonarius et la méthode de fermentation dans des caisses en plastique et l'autre entre la présence d'A. carbonarius et/ou niger et le procédé de fermentation sans brassage des fèves. Par ailleurs, la co-inoculation d'A. carbonarus et de Rhizopus sp. a retardé et même diminué fortement la production d'OTA dans le cacao lorsque Rhizopus est majoritaire. Si A. carbonarius est majoritaire, l'OTA est produite mais Rhizopus sp. semble la consommer après. Ces résultats semblent prometteurs pour envisager des solutions biologiques contre la contamination du cacao en OTA.