82 results on '"F Bonn"'
Search Results
2. Hat Biotin-Mangel Einfluss auf die CED-Pathogenese? Vorläufige Ergebnisse einer Querschnittsstudie
- Author
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A Arnold, O Schröder, J Erbach, Aysegül Aksan, F Bonn, and Juergen Stein
- Published
- 2021
3. P668 Does biotin deficiency play a role in the pathogenesis of Inflammatory Bowel Disease? Preliminary results of a cross-sectional study
- Author
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Aysegül Aksan, Juergen Stein, F Bonn, J Erbach, A Arnold, and Oliver Schröder
- Subjects
Pathogenesis ,Cross-sectional study ,business.industry ,Immunology ,Gastroenterology ,medicine ,Biotin deficiency ,General Medicine ,medicine.disease ,business ,Inflammatory bowel disease - Abstract
Background Biotin, a water-soluble B-vitamin, has been shown to have anti-inflammatory properties. A biotin-deficient diet was recently shown to induce a colitis-like phenotype in mice, alleviated by biotin substitution. Mice with DSS colitis showed biotin deficiency and significantly reduced levels of SDMT, a protein involved in biotin absorption. Oral biotin substitution reversed DSS colitis and induced remission by inhibiting NF-κB, a transcription factor that hinders inflammatory cytokine expression and plays a role in intestinal barrier integrity and IBD. We investigated for the first time a possible clinical role of biotin status in IBD. Methods In a comparative, cross-sectional study, serum samples of IBD patients were compared with samples of 80 healthy blood donors (40f;18-65y). CBC, albumin and hsCRP were determined by standard tests and samples assessed for presence/absence of inflammation (serum hsCRP, cutoff Results 138 IBD patients (67f;72 CD/66 UC;42.5±14.3y) were enrolled. Of these, 83/138 had inflammation (39f;43CD/40UC;42.5±14.6y) and 55/138 no inflammation (28f;29CD/26UC;42.5±13.9y). In IBD patients, mean serum 3HIAc levels were significantly higher vs. controls but similar with vs. without inflammation (Table 1). The reference serum 3HIAc level was calculated as 11.0–27.3 nmol/L from controls; biotin deficiency was defined as >27.3 nmol/L 3HIAc (90thPC), since no validated cut-off exists. Biotin deficiency in IBD patients was significantly greater than in controls (Table 1). Conclusion High serum 3HIAc levels were associated with IBD. In line with preclinical studies, biotin deficiency was more pronounced in IBD patients than controls. No relation was found with inflammatory activity or disease type. Our findings suggest that biotin may have a bigger role than thought in IBD; whether as a cause or effect in IBD pathogenesis warrants investigation. Routine assessment and correction of biotin status may ameliorate IBD and help maintain intestinal integrity. Table 1: 3-hydroxyisovaleryl carnitine levels and biotin deficiency
- Published
- 2021
4. An Easy and Fast Protocol for Affinity Bead-Based Protein Enrichment and Storage of Proteome Samples
- Author
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A, Otto, S, Maaß, F, Bonn, K, Büttner, and D, Becher
- Subjects
Proteomics ,Proteome ,Solid Phase Extraction - Abstract
Analysis of dilute protein samples is a challenging task for scientific and industrial labs all over the world. Although there are different methods available that allow for protein enrichment from various biological sources, all of them have serious limitations apart from their advantages. In order to perform highly reproducible and sensitive protein analysis of lowest concentrated samples, we optimized a method to enrich proteins on affinity beads (StrataClean) recently. This chapter describes the general protocol of this strategy, thereby discussing the power as well as the limits of this technique for qualitative and quantitative proteomic studies. Moreover, additional application and protocol variants will be discussed, expanding the number of compatible up- and downstream processing techniques compared to the originally published method. Hence, we evaluated the reduction of time for sample preparation by use of preprimed affinity beads and shorter incubation durations as well as the influence of high concentration of salts or urea in the sample buffer.
- Published
- 2017
5. A Scalable 6-to-18 GHz Concurrent Dual-Band Quad-Beam Phased-Array Receiver in CMOS
- Author
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Sanggeun Jeon, Yu-Jiu Wang, Arun Natarajan, Hua Wang, Ali Hajimiri, Aydin Babakhani, and F. Bonn
- Subjects
Engineering ,Radio receiver design ,Computer science ,business.industry ,Phased array ,Phase (waves) ,Image response ,Amplitude ,CMOS ,Scalability ,Electronic engineering ,Multi-band device ,Electrical and Electronic Engineering ,business ,Beam (structure) ,Monolithic microwave integrated circuit - Abstract
This paper reports a 6-to-18 GHz integrated phased- array receiver implemented in 130-nm CMOS. The receiver is easily scalable to build a very large-scale phased-array system. It concurrently forms four independent beams at two different frequencies from 6 to 18 GHz. The nominal conversion gain of the receiver ranges from 16 to 24 dB over the entire band while the worst-case cross-band and cross-polarization rejections are achieved 48 dB and 63 dB, respectively. Phase shifting is performed in the LO path by a digital phase rotator with the worst-case RMS phase error and amplitude variation of 0.5deg and 0.4 dB, respectively, over the entire band. A four-element phased-array receiver system is implemented based on four receiver chips. The measured array patterns agree well with the theoretical ones with a peak-to-null ratio of over 21.5 dB.
- Published
- 2008
6. SWAT-predicted influence of different landscape and cropping system alterations on phosphorus mobility within the Pike River watershed of south-western Québec
- Author
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F. Bonn, Chandra A. Madramootoo, J. Deslandes, Isabelle Beaudin, and Aubert Michaud
- Subjects
Hydrology ,Geography ,chemistry ,Phosphorus ,River watershed ,Soil Science ,chemistry.chemical_element ,Sediment ,Cropping system ,computer ,Bay ,Pike ,computer.programming_language - Abstract
An agreement between the governments of the province of Québec and the State of Vermont calls for a 41% decrease in phosphorus (P) loads reaching Missisquoi Bay, the northern portion of Lake Champlain. The agreement particularly targets the agricultural sector, since 80% of non-point source P inputs to the bay are associated with cultivated lands. In order to identify sustainable cropping practices likely to help meet the target P loads, the SWAT (soil and water assessment tool) model was employed to assess hydrological performance, erosion processes and P mobility on the bay’s principal Québec P contributing tributary, the 630 km2 Pike River watershed. Strong in-watershed spatial clustering of vulnerability to non-point source exports highlights the need for targeted implementation of sustainable agricultural practices and soil conservation works to derive the reduction in P loads. Planting cover crops over the 10% most vulnerable lands would result in roughly a 21% d rop in overall P exports at the watershed outlet, whereas the same 10% randomly distributed over the watershed would only contribute to a 6% drop in P exports. The study of different field-scale management scenarios indicated that achieving the targeted 41% reduction in P exports would require the widespread (half the land devoted to annual crops) implementation of sustainable cropping practices, and the conversion of a specific 10% of the territory to either cover crops or permanent prairie land. Meeting the P target-loads would require additional investments in the protection of floodplains and riparian strips, the targeted construction of runoff-control structures, and the rapid soil incorporation of manures on lands dedicated to annual crops. Key words: Soil and water assessment tool, modelling, sediment, phosphorus, cropping system, scenario, best agricultural management practices
- Published
- 2007
7. Influence of Landscape and Cropping System on Phosphorus Mobility within the Pike River Watershed of Southwestern Quebec: Model Parameterization and Validation
- Author
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Chandra A. Madramootoo, J. Deslandes, I. Beaudin, F. Bonn, and Aubert Michaud
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Hydrology ,geography ,geography.geographical_feature_category ,Phosphorus ,chemistry.chemical_element ,Hydrology (agriculture) ,chemistry ,Tributary ,Erosion ,Environmental science ,Water quality ,Cropping system ,computer ,Bay ,Water Science and Technology ,Pike ,computer.programming_language - Abstract
The hydrology, erosion processes and phosphorus mobility were modelled for the 630 km2 Pike River watershed, an important Quebec tributary of Lake Champlain. Given the recurring issue of cyanobacterial blooms in Missisquoi Bay, intervening to reduce the influx of phosphorus to the bay became a priority and led to an agreement between the governments of the province of Quebec and the state of Vermont. The model's parameterization was supported by a characterization and spatial representation of agricultural landscapes and production systems according to a field-scale partitioning of cultivated lands into over 2,400 hydrological response units, each distinctive in its combination of soil properties, topography, fertilizer inputs, and inclusion within one of 99 subwatersheds in the region under study. The model's calibration and validation were based on data from four hydrometric stations as well as the monitoring of water quality at the outlet of two small (six to eight km2) experimental watersheds of contr...
- Published
- 2007
8. Land degradation and erosion risk mapping by fusion of spectrally-based information and digital geomorphometric attributes
- Author
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S. Sommer, F. Bonn, W. Mehl, D. Haboudane, and A. Royer
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Hydrology ,Mediterranean climate ,media_common.quotation_subject ,Vegetation ,Desertification ,Soil water ,Land degradation ,Erosion ,General Earth and Planetary Sciences ,Environmental science ,Ecosystem ,Physical geography ,Digital elevation model ,media_common - Abstract
The Guadalentin basin, located in the SE of Spain, has a semiarid climate and presents typical characteristics of Mediterranean landscapes vulnerable to land degradation processes and desertification risks. In such an environment, when the vegetation cover is low, the signal received by satellites is dominated by the spectral properties of soils. Changes in these properties can be interpreted in terms of varying soil surface conditions. These optical changes underline the major modifications affecting soil surface under land degradation processes. The present research uses remote sensing techniques to characterise land degradation based on two approaches: spectral mixture analysis and a set of indices describing the spectrum shape. It also presents an integrated approach for evaluating ecosystem vulnerability to land degradation, through the combined analysis of spectrally-derived land units and geomorphometric units. Specific objectives consist of evaluating the potential of extending the indices describ...
- Published
- 2002
9. A simple method to account for topography in the radiometric correction of radar imagery
- Author
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F. Bonn, Gregoire Leclerc, and Nathalie Beaulieu
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Backscatter ,Télédétection ,Topographie ,Radar à synthèse d'ouverture ,Elevation ,Terrain ,Slant range ,Sol agricole ,law.invention ,Azimuth ,Imagerie ,law ,Radar imaging ,General Earth and Planetary Sciences ,U30 - Méthodes de recherche ,Radar ,Digital elevation model ,Geology ,Remote sensing - Abstract
This article presents a method to study and correct radiometric distortions caused by topography in SAR images. The method is easy to implement and requires neither sophisticated software nor code-level programming. It also considers the case of a flat surface having an elevation different from the one for which calibration parameters were derived. An ortho-image of the slant range distance is used with a Digital Elevation Model to generate images of the local incident angle along the range and azimuth directions. The method compensates for variations in the terrain area of each pixel and for the angular dependence of backscatter, allowing the choice of either an empirical or semi-empirical scattering model. The method is applied to high-resolution C-SAR subsets of an agricultural area in the Central Cordillera of Costa Rica. The removal of topographic features appears excellent for local incident angles up to 80, but small-scale structures have pronounced effects on the radar return for higher local incident angles and are not adequately corrected.
- Published
- 2001
10. Intérêt du moyen infrarouge pour la cartographie des résidus de cultures
- Author
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A. Bannari, F. Bonn, and D. Haboudane
- Subjects
Physics ,General Earth and Planetary Sciences ,Forestry ,Reflectivity - Abstract
Cette etude porte sur l'analyse du potentiel et de l'interet du moyen infrarouge pour la detection et la cartographie des residus de cultures. Les resultats obtenus montrent que, sans contredit, le moyen infrarouge est la region spectrale qui possede la meilleure sensibilite a la presence des residus. Les indices NDI et SACRI montrent une sensibilite reduite en terme de detection des residus. Bien que l'indice NDI5-7 presente une bonne sensibilite a la variation du taux de couverture par les residus, il reste sensible aux proprietes optiques des sols nus sous-jacents, notamment lorsque le sol est sec et de couleur claire et brillante. Le MSACRI (Modified Soil Adjusted Crop Residue Index) montre un tres bon potentiel pour minimiser l'effet des sols sous-jacents et une assez bonne dynamique, avec des valeurs moyennes voisines de ± 0,03 pour les sols nus et proches de 0,20 pour des residus couvrants. L'introduction d'une constante multiplicative egale a 5 permet de resoudre le probleme de la saturation et ramene les valeurs de MSACRI dans une gamme qui varie entre 0 et 1 avec un coefficient de correlation egal a 0,97.
- Published
- 2000
11. Soil Water Content Determination Using a Digital Ground-Penetrating Radar
- Author
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A. Tarussov, F. Bonn, A. Judge, Andre Chanzy, Unité de Science du Sol, Institut National de la Recherche Agronomique (INRA), and ProdInra, Migration
- Subjects
Topsoil ,010504 meteorology & atmospheric sciences ,Moisture ,[SDV]Life Sciences [q-bio] ,Soil Science ,Mineralogy ,Soil science ,15. Life on land ,010502 geochemistry & geophysics ,01 natural sciences ,law.invention ,[SDV] Life Sciences [q-bio] ,Radio propagation ,law ,Soil water ,Ground-penetrating radar ,Calibration ,Environmental science ,Radar ,Water content ,ComputingMilieux_MISCELLANEOUS ,0105 earth and related environmental sciences - Abstract
We evaluated the potential of a digital ground-penetrating radar (GPR) for soil moisture determination. Ground-penetrating radar offers a fast and nondestructive way for estimating the soil dielectric constant and may be an interesting tool for low-cost mapping of soil moisture. Two modes of operation were considered: (i) the ground mode where signal propagation between the antennas placed on the surface was studied; (ii) the airborne mode where the antennas are raised 5-15 m above the soil surface. Variables describing the GPR response were defined and related to the soil moisture. It is shown from field experiments that the GPR measurements performed at 200 MHz in both modes are mainly affected by the moisture in the 10- to 20-cm topsoil layer. In the ground mode, the obtained soil moisture error after calibration was lower than 0.03 m 3 /m 3 . In the airborne mode, soil moisture estimations were less accurate (0.046 m 3 /m 3 ). The wave spreading loss characterization has to be improved to get an altitude-independent GPR measurement.
- Published
- 1996
12. EMLA Anaesthetic Cream for Sharp Debridement of Venous Leg Ulcers: A Double-Masked, Placebo-Controlled Study
- Author
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F. Bonn, G. Becchi, A. N. Alberti, P. Cao, G. Agrifoglio, M. Domanin, A. R. Todini, M. Caserini, and E. Baggio
- Subjects
medicine.medical_specialty ,Topical anaesthesia ,business.industry ,Visual analogue scale ,medicine.medical_treatment ,Pain relief ,Placebo-controlled study ,General Medicine ,030204 cardiovascular system & hematology ,030230 surgery ,Placebo ,Emla cream ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,Debridement (dental) ,Anesthesia ,medicine ,business ,Cardiology and Cardiovascular Medicine - Abstract
Objective: The aim of this double-masked, placebo-controlled trial was to confirm the anaesthetic effect of EMLA cream compared with placebo when used for sharp debridement of venous leg ulcers and to test its feasibility with respect to the usual procedure. Methods: One hundred and ten patients with venous ulcers were randomised to EMLA or placebo cream treatment for 30-45 min. Pain from debridement was evaluated by the patient on a 100 mm visual analogue scale (VAS) and by the physician on a verbal scale. Results: The median VAS scores were 16.5 and 52 in EMLA- and placebo-treated patients, respectively (pConclusion: Debridement of venous leg ulcers using topical anaesthesia is easy and safe, with adequate pain relief in both in- and outpatients.
- Published
- 2000
13. Gestion Des Resources Agricoles A Laide D'un Systeme D'information Geographique: Application a~ L'evaluation Quantitative De L'erosion Hydrique
- Author
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D. Baril, F. Bonn, S. Perras, and A. Pesant
- Subjects
Environmental science - Published
- 2005
14. Utilisation Des Mesures Radiometriques De Terrain Pour La Cartographic Satellitaire Des Sols D'une Region Semi-Aride Du Maroc
- Author
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A. Merzouk, H. Mario, Q.h.j. Gwyn, and F. Bonn
- Subjects
Spectroradiometer ,Remote sensing (archaeology) ,Radiometry ,Environmental science ,Reflectivity ,Remote sensing - Published
- 2005
15. Remote Sensing Protective Land Cover Evaluation As An Input To Regional Scale Erosion Modelling
- Author
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Linda Cyr, H. Anys, A. Poulin, and F. Bonn
- Subjects
Geographic information system ,Remote sensing (archaeology) ,business.industry ,Erosion ,Environmental science ,Land cover ,Vegetation Index ,Scale (map) ,business ,Remote sensing - Published
- 2005
16. Potentiality of RADARSAT-1 images in the detection of salt affected soils in the arid zone: Wadi El-Natrun, Egypt
- Author
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Z. Abdel-Razak Mohamed, L.P. Giugni, F. Bonn, and A. Mahmood
- Subjects
Hydrology ,geography ,geography.geographical_feature_category ,Soil water ,Soil science ,Terrain mapping ,Radar detection ,Perturbation (geology) ,Geology ,Arid zone ,Wadi - Abstract
This paper presents a simulation comparative study of the effect of salt on the imaginary part (/spl epsiv/") of the dielectric constant (/spl epsiv/) and therefore on the backscattering coefficient (/spl sigma//sub 0/). Mixing model is adapted to estimate this effect on Soil of Wadi El-Natrun area, west desert of Egypt, as a representative area of salt affected soils in the arid zone. Small perturbation backscattering coefficient model (SPM) is also used to estimate the best mode of RADARSAT-1. S1 and S3 were found to be the best choice to detect such type of soil for this area and similar one.
- Published
- 2004
17. Modelling of human dimension on soil erosion processes for remote sensing applications
- Author
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C. Gaillard, F. Bonn, and F. Zagolski
- Subjects
Watershed ,Geographic information system ,Remote sensing application ,Remote sensing (archaeology) ,business.industry ,Erosion ,Common spatial pattern ,Environmental science ,Soil science ,business ,Sediment transport ,Nonpoint source pollution - Abstract
Spatial modelling of hydrological and erosion processes at watershed scale is subject to an increasing development simultaneously with the expanded use of remote sensing and geographical information systems (GIS). Nevertheless, the raster structure of available spatial erosion models does not take into account some human landscape dimensions. Linear and directional features are commonly neglected in water and sediment transport modelling. This paper presents an attempt for integrating influences of spatial pattern discontinuities and directivity effects due to tillage and row of plants on the distribution of flows in agricultural watersheds. Introduction of these improvements in the ANSWERS (Areal Nonpoint Source Watershed Environment Response Simulation) model are in process.
- Published
- 2002
18. A highly integrated commercial GaAs transceiver MMIC for 2.45 GHz ISM applications
- Author
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J. Ortiz, T. Quach, M. Thomas, and F. Bonn
- Subjects
Engineering ,business.industry ,Amplifier ,Electrical engineering ,Hardware_PERFORMANCEANDRELIABILITY ,Noise figure ,Low-noise amplifier ,CMOS ,Hardware_INTEGRATEDCIRCUITS ,Electronic engineering ,MESFET ,Transceiver ,business ,Monolithic microwave integrated circuit ,Power control - Abstract
A highly integrated single chip 3 volt GaAs transceiver MMIC has been developed for wireless local area networks (WLAN). The multi-function chip includes a low noise amplifier (LNA), down mixer, diversity switching, transmit-receive (Tx/Rx) switching and a power amplifier (PA). The chip was fabricated based on a 3 volt GaAs MESFET implant process which was optimized for the multiple sub-circuits. The transceiver MMIC achieved excellent performance over the 2.45 GHz Industrial, Scientific and Medical (ISM) frequency band. This multi-function IC is packaged in a low cost ceramic package to meet cost goals for the commercial market. The fabricated circuits have achieved excellent performance. Typical circuits achieve 19.5 dB small signal conversion gain (antenna to mixer output) and 6 dB noise figure while consuming 12 mA with a 3 volt supply. The mixer and LNA include CMOS compatible enable/disable circuitry to conserve current during standby operation. In the transmit mode, the transceiver MMIC provides an output power of 22 dBm with greater than 50% efficiency. In addition, power control circuitry is included within the power amplifier to provide an adjustable output power and has pulse shaping circuitry to minimize spectral splatter under pulsed bias operation levels.
- Published
- 2002
19. A low current high performance LNA for global positioning receiver applications
- Author
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F. Bonn
- Subjects
Engineering ,business.industry ,Amplifier ,Electrical engineering ,Global Positioning System ,Electronic engineering ,Small Outline Integrated Circuit ,Direct coupling ,Instrumentation amplifier ,Antenna (radio) ,business ,Direct-coupled amplifier ,Low-noise amplifier - Abstract
A low noise amplifier for Global Positioning System (GPS) applications has been designed and tested with good results. The amplifier can operate from 2-5 V with 1.0 dB NF and 18.4 dB of gain at 5 V and 6.5 mA. The device is packaged in a low cost 8 lead SOIC and features a DC coupled RF output for remote antenna applications.
- Published
- 2002
20. Modified Soil Adjusted Crop Residue Index (MSACRI): A new index for mapping crop residue
- Author
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D. Haboudane, F. Bonn, H. McNairn, and K. Bannari
- Subjects
Crop residue ,Residue (complex analysis) ,Soil water ,Mid infrared ,Soil science ,Multispectral method ,Reflectivity ,Mathematics - Abstract
The authors present a new index for mapping and estimating the crop residue cover fraction: the MSACRI (Modified Soil Adjusted Crop Residue Index). This index exploits the mid infrared channels: 1.55 /spl mu/m to 1.75 /spl mu/m and 2.10 /spl mu/m to 2.35 /spl mu/m. Compared to the visible, these channels are characterized by large transparence in relation to atmospheric constituents. In extreme atmospheric conditions, the MSACRI is subject to a slight reduction of approximately 4%. It offers better discrimination of soils/residue and shows quite good dynamics in the presence of residue with average values close to /spl plusmn/0.03 for bare soil and close to 0.70 for full cover residue.
- Published
- 2000
21. Modelling backscatter in bare organic soils
- Author
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Q.P. Xu, R. J. Brown, A.K. Fung, J.B. Boisvert, and F. Bonn
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Harrow ,L band ,Chisel ,Materials science ,C band ,Perpendicular ,Seedbed ,Scatterometer ,Polarization (waves) ,Remote sensing - Abstract
A study was conducted in 1996 and 1997 to develop a model that would simulate radar backscatter in histosols with different field managements. Measurements were made under various soil moisture content using the Canadian Remote Sensing Centre scatterometer. Seedbed and harrow in 1996, and harrow, moldboard and chisel treatments in 1997, were applied to plots with rows oriented parallel and perpendicular to the view angle of the antennas. The scatterometer operated in two bands (C, L), four polarisations (HH, HV, VH, VV) and four incidence angles (25/spl deg/, 30/spl deg/, 40/spl deg/, 50/spl deg/). This paper presents the methodology, the models and some results from 1996 data analysis. Actual models were not adequate to simulate the backscatter in seedbed plots except at some combinations of incidence angle and polarisation. They were not able to simulate the angular response of the signal when rows were perpendicular to view angle. Calibration and further development is on-going with 1997 data.
- Published
- 1998
22. Radiométrie micro-onde dans le cas de couverts végétaux partiels : estimation de la teneur en eau du sol
- Author
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D. Haboudane, F. Bonn, Jean-Pierre Wigneron, Jean-Christophe Calvet, Andre Chanzy, ProdInra, Migration, Unité de Science du Sol, Institut National de la Recherche Agronomique (INRA), and Unité de bioclimatologie
- Subjects
[SDV] Life Sciences [q-bio] ,010504 meteorology & atmospheric sciences ,SORGHO D'ALEP ,[SDV]Life Sciences [q-bio] ,0211 other engineering and technologies ,General Earth and Planetary Sciences ,02 engineering and technology ,15. Life on land ,01 natural sciences ,ComputingMilieux_MISCELLANEOUS ,021101 geological & geomatics engineering ,0105 earth and related environmental sciences - Abstract
L'emission micro-onde d'une surface partiellement recouverte de vegetation est influencee par la teneur en eau de la surface du sol (θ s ), la vegetation et le mode de repartition spatial de la vegetation au sein de la surface de mesure. L'etude de ce dernier facteur, peu etudie jusqu'a present, constitue l'objet principal de cet article. Un modele simple d'emission micro-onde par une surface couverte de vegetation est utilise dans cette etude afin d'interpreter les mesures radiometriques et les inverser pour estimer θ s . Les donnees experimentales ont ete acquises a 1,4 GHz, 5,05 GHz et 10,65 GHz en milieu controle sur des cultures de sorgho et de ble presentant une couverture spatiale partielle et heterogene. L'analyse a porte dans un premier temps sur les parametres de vegetation et de rugosite. Nous nous sommes ensuite interesses aux variables du modele micro-onde qui sont: le contenu en eau de la vegetation (w c ) et θ s . Nous montrons qu'a 10.65 GHz, l'indice de polarisation definit par PDh=(T BV -T BH ) * T BH (ou T Bp est la temperature de brillance micro-onde en polarisation p: horizontale ou verticale) permet d'estimer W c selon une relation unique pour le sorgho et le ble et ceci independamment du mode de repartition spatiale de la vegetation qui etait dans notre etude soit eparse, soit sous forme de tache. L'estimation de θ s en inversant le modele d'emission micro-onde a ete testee. L'inversion a ete realisee en combinant les mesures a 1,4 ou 5,05 GHz et celles a 10,65 GHz. Nous avons obtenu des estimations satisfaisantes sur les estimations de θ s lorsque les parametres du modele sont connus.
- Published
- 1996
23. A review of vegetation indices
- Author
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F. Bonn, D. Morin, Alfredo Huete, and A. Bannari
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Moisture ,Remote sensing application ,Geography, Planning and Development ,Spectral response ,Enhanced vegetation index ,Geological & Geomatics Engineering ,Vegetation response ,Shadow ,medicine ,Environmental science ,medicine.symptom ,Vegetation (pathology) ,Instrumentation ,Soil color ,Remote sensing - Abstract
In the field of remote sensing applications, scientists have developed vegetation indices (VI) for qualitatively and quantitatively evaluating vegetative covers using spectral measurements. The spectral response of vegetated areas presents a complex mixture of vegetation, soil brightness, environmental effects, shadow, soil color and moisture. Moreover, the VI is affected by spatial‐temporal variations of the atmosphere. Over forty vegetation indices have been developed during the last two decades in order to enhance vegetation response and minimize the effects of the factors described above. This paper summarizes, refers and discusses most of the vegetation indices found in the literature. It presents different existing classifications of indices and proposes to group them in a new classification.
- Published
- 1995
24. Indices of adequate dialysis in patients hemodialyzed with AN 69 membrane
- Author
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P, Simon, K S, Ang, G, Cam, A, Benziane, and F, Bonn
- Subjects
Adult ,Male ,Survival Rate ,Renal Dialysis ,Humans ,Female ,Membranes, Artificial ,Middle Aged ,Aged ,Nutrition Disorders - Abstract
The objective of this study was to evaluate the incidence of morbidity (at least one hospitalization) during the first twelve months of hemodialysis (thrice weekly for 4 hours) in 54 (27 males and 27 females) sex and age matched patients, of whom 32 were treated with AN 69 (M/F = 13/19, 62 +/- 14 years) and 22 with Cuprophan (M/F = 14/8, 61 +/- 14 years). Patients were classified according to the value of TAC urea during the period under study: constantly superior or equal to 20 mmol/liter in Group A (high TAC urea) or inferior to 20 mmol/liter in Group B (low TAC urea). Dialysis quantification (Kt/V) and estimation of the patient's protein catabolic rate (PCR) were based on measurement of the midweek pre- and post-dialysis blood urea nitrogen. In the patients of Group B, incidence of morbidity was significantly increased when age was over 50 years and when AN 69 membrane was used (P0.02). Furthermore, in Group A, the risk of hospitalization was significantly higher in patients treated by Cuprophan than in those treated by AN 69 (P0.02). The survival rate was also studied. Better survival (70%) at four years was observed in patients with high TAC urea who were treated by AN 69. The difference was highly significant with the survival rate (22%) in patients with high TAC urea who were treated by Cuprophan (P0.01).(ABSTRACT TRUNCATED AT 250 WORDS)
- Published
- 1993
25. Combination of single storm erosion and hydrological models into a geographic information system
- Author
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H. Chakroun, J.P. Fortin, and F. Bonn
- Subjects
Hydrology ,Geographic information system ,Geography ,business.industry ,Erosion ,Storm ,business - Published
- 1993
26. Echanges plasmatiques par filtrationExpérience du centre hospitalier de Saint-Brieuc, à propos de 21 patients
- Author
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P Simon, M. Boivin, K.S. Ang, Menault M, J. Vaucel, F Bonn, D. Bombail, and M Guezennec
- Subjects
business.industry ,Medicine ,Hematology ,General Medicine ,business - Published
- 1981
27. Radiometric correction of C-band imagery for topographic effects in regions of moderate relief
- Author
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M. Hinse, Q.H.J. Gwyn, and F. Bonn
- Subjects
Synthetic aperture radar ,Spectral signature ,Backscatter ,C band ,Geodesy ,law.invention ,law ,Radar imaging ,General Earth and Planetary Sciences ,Radiometry ,Electrical and Electronic Engineering ,Radar ,Digital elevation model ,Geology ,Remote sensing - Abstract
The combined effects of topography, slope, look angle, and aspect on C-band synthetic-aperture radar (SAR) data on the radiometric quality of SAR images in a region of moderate relief are examined. A correction method was used to attenuate the change of illumination across the swath due to the antenna pattern. Ground data were integrated into the analysis using a digital terrain model (DTM). Correction functions based on the cosine of the incidence angle were applied to the thematic classes and to the grouped classes in order to reduce the effects related to topography. It was found that it is possible to eliminate part of the radiometric variations created by moderate topographic relief. After the corrections were applied, a reduction was noted of the variance in the radiometric values of the spectral signatures of the cover types, which ranged between 3.03% and 9.47%, depending on the correction function used. >
- Published
- 1988
28. ETAT DE CROISSANCE DES CULTURES FOURRAGERES CARACTERISE PAR SIMULATION AEROPORTEE THEMATIC MAPPER DE LANDSAT-5
- Author
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A. Pesant, F. Bonn, J. M. M. Dubois, and M. Carignan
- Subjects
Spectral signature ,Remote sensing (archaeology) ,Thematic Mapper ,Digital image analysis ,Environmental science ,Forestry ,Plant Science ,Vegetation ,Stage (hydrology) ,Horticulture ,Drainage ,Agronomy and Crop Science ,Image resolution - Abstract
Two airborne surveys, simulating the spectral and spatial resolution of the Thematic Mapper sensor of Landsat-5 were made during the summer of 1982 (10 June and 18 Aug.). The Agriculture Canada Research Station at Lennoxville was surveyed and two common field crops in Quebec were studied. The digital image analysis revealed two parameters which influence the spectral signatures of the vegetation: the alfalfa plots presented spectral variations relative to cover structure which were associated with growth stage, and the corn plot analysis suggests a relation between the drainage conditions of the soil and growth characteristics.Key words: Remote sensing, airborne surveys, Thematic Mapper simulation, field crops, digital image analysis, spectral and multidate analysis
- Published
- 1986
29. Landsat for Monitoring the Changing Geography of Canada
- Author
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F Bonn, M D Thompson, R A Ryerson, and P J Howarth
- Subjects
Geography ,Cartography - Published
- 1982
30. [Iron-overload in patients on maintenance hemodialysis: diagnostic criteria, indications and treatment by desferrioxamine (author's transl)]
- Author
-
P, Simon, F, Bonn, M, Guezennec, T, Tanquerel, and Ksang
- Subjects
Adult ,Male ,Hemosiderosis ,Iron ,Biopsy, Needle ,Deferoxamine ,Middle Aged ,Hepatitis B ,Liver ,HLA Antigens ,Renal Dialysis ,Ferritins ,Humans ,Kidney Failure, Chronic ,Female ,Hemochromatosis ,Aged - Abstract
33 patients with chronic renal failure were divided into two groups. Group I consisted of 8 non-dialysed patients without any clinical or biochemical sign of liver disturbance nor any iron supplementation. Group II consisted of 25 maintenance hemodialysis (MHD) patients treated from 2 to 13 years. 19 subjects had chronic B hepatitis. Total exogenous iron load parenteral iron and/or blood transfusions) was calculated. Body iron overload (hemosiderosis) was assessed by liver iron concentration (LIC) in needle biopsy specimens according to Barry's method (less than 200 microgram/100 mg dry weight) and serum ferritin levels (less than 360 ng/ml). 4 patients whose serum ferritin was increased with or without hepatic fibrosis and with or without any organ dysfunction due to hemochromatosis received i.v. infusions of desferrioxamine in doses of 2 g at each dialysis. Serum ferritin levels were correlated with LIC (p less than 0.001) and iron load (p less than 0.001). Hemosiderosis was noted in 16 MHD patients (group II) and correlated with iron load. Hemochromatosis was noted in 4 patients (group II). 4 hemodialysed patients with iron overload were treated by desferrioxamine from 6 to 18 months. During this therapy, body iron stores fell and organ dysfunction (heart failure, hepatic cytolysis, anaemia, diabetes mellitus improved. Long-term chelation therapy by desferrioxamine was effective and the chelated iron was readily removed by dialysis. These data show the importance of precise evaluation of iron stores in MHD patients.
- Published
- 1981
31. [Plasma exchange using filtration. Experience at the apropos of 21 patients]
- Author
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P, Simon, K S, Ang, M, Menault, D, Bombail, J, Vaucel, M, Guezennec, M, Boivin, and F, Bonn
- Subjects
Adult ,Male ,Vasculitis ,Digoxin ,Lupus Vulgaris ,Nephrotic Syndrome ,Lymphoma ,Plasma Exchange ,Anti-Glomerular Basement Membrane Disease ,Plasmapheresis ,Middle Aged ,Hypertension, Malignant ,Glomerulonephritis ,Purpura, Thrombocytopenic ,Humans ,Female ,Waldenstrom Macroglobulinemia ,Multiple Myeloma ,Aged - Published
- 1981
32. Microwave, visible and near infrared spectral properties as a function of water content in organic soils
- Author
-
R. Protz, Q.P. Xu, I. Rubinstein, C. Hersom, J. B. Boisvert, F. Bonn, and Nicolas Tremblay
- Subjects
Geography ,Spectral properties ,General Earth and Planetary Sciences ,Mineralogy ,High resolution ,Forestry ,Reflectivity - Abstract
En niai 1996, un projet fut mene dans la region de Sherrington et Ste-Clotilde (Quebec) afin de determiner le potentiel des capteurs hyperfrequences, visible et proche infrarouge pour estimer la variation des teneurs en eau dans les histosols au printemps. Des donnees hyperfrequences aeroportees furent acquises avec un radiometre SLF MR (Scanning Low Frequency Microwave Radiometerj. Des images furent prises dans le visible et proche infrarouge avec un spectrometre imageur CASI (Compact Airborne Spectrographic Imager) monte en parallele avec le radiometre. Une image RADARSAT a haute resolution fut aussi acquise. Les donnees d'humidite du sol et des informations complementaires furent prises dans vingt champs pendant le survol (26 mai 96) et le passage de RADARSAT (30 mai 96). Les resultats preliminaires ont montre que les champs pouvaient etre discrimines selon qu'ils sont nus ou avec cultures/residus en utilisant les spectres de reflectance du CASI. Dans les sols nus. les valeurs de reflectance ont augmente avec la diminution des teneurs en eau. La relation entre la reflectance dans le proche infrarouge (850 ou 870nm) et la teneur en eau etait bien ajustee par une fonction polynomiale du second ordre. Les indices de vegetation (NDVI) calcules au-dessus de champs de cereales etaient correles avec la densite du couvert (gamme 10-25%). Les temperatures de brillance ont presente une relation lineaire avec les teneurs en eau a la surface. Cette relation etait independante de la rugosite et de la presence ou non de cereales. Cependant, la relation entre les coefficients de retrodiffusion de RADARSAT et les teneurs en eau etait dependante de ces deux parametres. Les champs nus lisses (semes en planches) presentaient des valeurs de retrodiffusion plus faibles. Il fut donc possible de distinguer les champs nus lisses des autres champs.
33. Évaluation des hyperfréquences pour le suivi de la teneur en eau et des cultures dans les histosols
- Author
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Q.P. Xu, J. B. Boisvert, R. J. Brown, Nicolas Tremblay, and F. Bonn
- Subjects
Physics ,General Earth and Planetary Sciences ,Forestry - Abstract
Le potentiel des capteurs actifs a hyperfrequences, et plus particulierement RADARSAT, pour des applications en sols organiques a ete evalue a l'aide d'un diffusiometre monte sur un camion. Les objectifs de l'etude etaient de modeliser la relation entre la teneur en eau du sol, la constante dielectrique et le signal radar et d'evaluer l'impact de la culture et des pratiques culturales sur le signal, Une collecte hebdomadaire de donnees fut menee sur un sol organique a la ferme experimentale de Ste-Clotilde (Quebec) entre juin et septembre 1996. Les resultats obtenus ont montre que le suivi des teneurs en eau devait se faire de preference aux faibles angles d'incidence (25°-HH, 30°-VV) en l'absence de vegetation. Par contre, l'estimation de la biomasse, de la teneur en eau dans la plante et de la hauteur du couvert etait preferable aux grands angles d'incidence (50°). Le moment et le type de pratiques culturales ont eu un effet sur le comportement angulaire du signal et par consequent l'estimation de la teneur en eau. Une relation lineaire entre le signal et la constante dielectrique a ete derivee pour une surface hersee et une surface semee; elle a montre que la rugosite avait influence surtout aux plus fortes teneurs en eau. L'orientation perpendiculaire des sillons par rapport a la visee du capteur dans un champ herse a produit un accroissement du signal en bande L a tous les angles. Le signal en bande C a ete plus fortement correle avec la hauteur des plants et la biomasse seche qu'avec l'humidite des plants; on a observe l'inverse en bande L. La biomasse seche a pu etre estimee par le signal CHH. L'ajout de la hauteur du couvert dans le modele de regression a permis d'expliquer 85% de la variation de la biomasse seche a 50° d'angle d'incidence. Les correlations entre les parametres de la vegetation et le signal etaient plus elevees en bande L qu'en bande C.
34. Compression of grayscale scientific and medical image data
- Author
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F Murtagh, M Louys, J L Starck, and F Bonnarel
- Subjects
lossy and lossless compression ,wavelet transform ,multiresolution transform ,noise model ,Science (General) ,Q1-390 - Abstract
A review of issues in image compression is presented, with a strong focus on the wavelet transform and other closely related multiresolution transforms. The roles of information content, resolution scale, and image capture noise, are discussed. Experimental and practical results are reviewed.
- Published
- 2006
- Full Text
- View/download PDF
35. Chrestomathia Arabica : grammatica historica in usum scholarum Arabicarum ex codicibus ineditis conscripta
- Author
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Baaden, C. F. Bonn, imp., Cnobloch, Carl Bonn, ed., Freytag, Georg Wilhelm, 1788-1861, Baaden, C. F. Bonn, imp., Cnobloch, Carl Bonn, ed., and Freytag, Georg Wilhelm, 1788-1861
- Abstract
Fecha de publicación en números romanos, Introducción en latín y texto en árabe
36. La télédétection appliquée à l'étude de l'atmosphère et du climat
- Author
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Seguin, Bernard, Royer, A., Lemieux, G., Unité de bioclimatologie, Institut National de la Recherche Agronomique (INRA), F. Bonn (Editeur), and ProdInra, Migration
- Subjects
[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,METEOROLOGIE ,CLIMATOLOGIE ,ComputingMilieux_MISCELLANEOUS - Abstract
National audience
- Published
- 1996
37. Agriculture et statistiques agricoles
- Author
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Guyot, G., ProdInra, Migration, F. Bonn (Editeur), Unité de bioclimatologie, and Institut National de la Recherche Agronomique (INRA)
- Subjects
[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,AGROMETEOROLOGIE ,ComputingMilieux_MISCELLANEOUS - Abstract
National audience
- Published
- 1996
38. Estimation de la teneur en eau de surface des sols nus a l'aide des mesures hyperfrequences actives
- Author
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Chanzy, Andre, Bertuzzi, Patrick, Bruckler, Laurent, Unité de Science du Sol, Institut National de la Recherche Agronomique (INRA), F. Bonn (Editeur), and ProdInra, Migration
- Subjects
[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
National audience
- Published
- 1994
39. Satellites et climatologie : actes du colloque de Lannion-Rennes (France)
- Author
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Savane, M., Seguin, Bernard, Guillot, B., ProdInra, Migration, Unité de bioclimatologie, Institut National de la Recherche Agronomique (INRA), F. Bonn (Editeur), and Mounier, J. (ed.)
- Subjects
TEMPERATURE DE SURFACE ,METHODE D'ANALYSE ,SECHERESSE ,SPECTROMETRIE INFRAROUGE ,[SDV]Life Sciences [q-bio] ,TELEDETECTION SPATIALE ,SATELLITE METEOSAT ,CLIMATOLOGIE ,RAYONNEMENT INFRAROUGE ,[SDV] Life Sciences [q-bio] ,EVAPOTRANSPIRATION REELLE ,AGROMETEOROLOGIE ,SATELLITE NOAA ,ComputingMilieux_MISCELLANEOUS - Abstract
National audience
- Published
- 1991
40. Sample Preparation for Mass Spectrometry-Based Absolute Quantification of Bacterial Proteins in Antibiotic Stress Research.
- Author
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Maaß S, Antelo-Varela M, Bonn F, and Becher D
- Subjects
- Mass Spectrometry, Specimen Handling, Membrane Proteins, Bacterial Proteins, Anti-Bacterial Agents pharmacology
- Abstract
Absolute protein quantification is an essential tool for system biology approaches and elucidation of stoichiometry of multi-protein complexes. In this updated chapter, a universal protocol for gel-free absolute protein quantification in bacterial systems is described, which provides adapted methods for cytosolic and membrane proteins. This protocol can be used for sample preparation prior to miscellaneous mass spectrometry-based quantification workflows like AQUA, Hi3, and emPAI. In addition, a focus has been set to the specific challenges in antibiotic stress research., (© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2023
- Full Text
- View/download PDF
41. USP32-regulated LAMTOR1 ubiquitination impacts mTORC1 activation and autophagy induction.
- Author
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Hertel A, Alves LM, Dutz H, Tascher G, Bonn F, Kaulich M, Dikic I, Eimer S, Steinberg F, and Bremm A
- Subjects
- Mechanistic Target of Rapamycin Complex 1, Autophagy
- Abstract
The endosomal-lysosomal system is a series of organelles in the endocytic pathway that executes trafficking and degradation of proteins and lipids and mediates the internalization of nutrients and growth factors to ensure cell survival, growth, and differentiation. Here, we reveal regulatory, non-proteolytic ubiquitin signals in this complex system that are controlled by the enigmatic deubiquitinase USP32. Knockout (KO) of USP32 in primary hTERT-RPE1 cells results among others in hyperubiquitination of the Ragulator complex subunit LAMTOR1. Accumulation of LAMTOR1 ubiquitination impairs its interaction with the vacuolar H
+ -ATPase, reduces Ragulator function, and ultimately limits mTORC1 recruitment. Consistently, in USP32 KO cells, less mTOR kinase localizes to lysosomes, mTORC1 activity is decreased, and autophagy is induced. Furthermore, we demonstrate that depletion of USP32 homolog CYK-3 in Caenorhabditis elegans results in mTOR inhibition and autophagy induction. In summary, we identify a control mechanism of the mTORC1 activation cascade at lysosomes via USP32-regulated LAMTOR1 ubiquitination., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
42. Vitamin D Metabolites in Nonmetastatic High-Risk Prostate Cancer Patients with and without Zoledronic Acid Treatment after Prostatectomy.
- Author
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Stephan C, Ralla B, Bonn F, Diesner M, Lein M, and Jung K
- Abstract
There are limited and discrepant data on prostate cancer (PCa) and vitamin D. We investigated changes in three vitamin D
3 metabolites in PCa patients after prostatectomy with zoledronic acid (ZA) treatment regarding their metastasis statuses over four years. In 32 patients from the ZEUS trial, 25(OH)D3 , 24,25(OH)2 D3 , and 1,25(OH)2 D3 were measured with liquid chromatography coupled with tandem mass spectrometry at four time points. All the patients received daily calcium and vitamin D3 . Bone metastases were detected in 7 of the 17 ZA-treated patients and in 5 of the 15 controls (without ZA), without differences between the groups ( p = 0.725). While 25(OH)D3 and 24,25(OH)2 D3 increased significantly after the study's start, with following constant values, the 1,25(OH)2 D3 concentrations remained unchanged. ZA treatment did not change the levels of the three metabolites. 25(OH)D3 and 24,25(OH)2 D3 were not associated with the development of bone metastases. In contrast, 1,25(OH)2 D3 was also higher in patients with bone metastasis before the study's start. Thus, in high-risk PCa patients after prostatectomy, 25(OH)D3 , 24,25(OH)2 D3 , and 1,25(OH)2 D3 were not affected by supportive ZA treatment or by the development of metastasis over four years, with the exception of 1,25(OH)2 D3 , which was constantly higher in metastatic patients. There might be potential prognostic value if the results can be confirmed.- Published
- 2022
- Full Text
- View/download PDF
43. Relevance of Biotin Deficiency in Patients with Inflammatory Bowel Disease and Utility of Serum 3 Hydroxyisovaleryl Carnitine as a Practical Everyday Marker.
- Author
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Erbach J, Bonn F, Diesner M, Arnold A, Stein J, Schröder O, and Aksan A
- Abstract
Background: Biotin, a water-soluble B vitamin, has demonstrable anti-inflammatory properties. A biotin-deficient diet induced a colitis-like phenotype in mice, alleviable by biotin substitution. Mice with dextran sulfate sodium (DSS)-induced colitis showed biotin deficiency and diminished levels of sodium-dependent multivitamin transporter, a protein involved in biotin absorption. Biotin substitution induced remission by reducing activation of NF-κB, a transcription factor involved in intestinal permeability and inflammatory bowel disease (IBD). We investigated for the first time a possible clinical role of biotin status in IBD., Methods: In a comparative, retrospective, cross-sectional study, serum samples of 138 patients with IBD (67 female; 72 Crohn's disease (CD), 66 ulcerative colitis (UC)) aged 18-65 years and with a mean age (±SD) of 42.5 ± 14.3 years as well as 80 healthy blood donors (40 female; 40.0 ± 10.0 years; range 20-60 years) were analyzed. Inflammation was defined as hsCRP ≥5 mg/L, and to determine biotin status, serum 3-hydroxyisovaleryl carnitine (3HIVc) levels were measured by LC-MS/MS., Results: A total of 138 patients with IBD (67f; 72CD/66 UC; 42.5 ± 14.3 years) were enrolled: 83/138 had inflammation. Mean serum 3HIVc levels were significantly higher in IBD patients but unaffected by inflammation. Biotin deficiency (95th percentile of controls: >30 nmol/L 3HIVc) was significantly more common in IBD patients versus controls., Conclusion: High serum 3HIVc levels and biotin deficiency were associated with IBD but not inflammatory activity or disease type. Our findings suggest biotin may play a role as cause or effect in IBD pathogenesis. Routine assessment and supplementation of biotin may ameliorate IBD and support intestinal integrity.
- Published
- 2022
- Full Text
- View/download PDF
44. BAG3 is a negative regulator of ciliogenesis in glioblastoma and triple-negative breast cancer cells.
- Author
-
Linder B, Klein C, Hoffmann ME, Bonn F, Dikic I, and Kögel D
- Subjects
- Adaptor Proteins, Signal Transducing genetics, Apoptosis Regulatory Proteins genetics, Aurora Kinase A metabolism, Brain Neoplasms pathology, CDC2 Protein Kinase metabolism, CRISPR-Cas Systems, Cell Line, Tumor, Cell Movement genetics, Drug Resistance, Neoplasm genetics, Epithelial-Mesenchymal Transition genetics, Gene Knockout Techniques methods, Glioblastoma pathology, Humans, Proteomics methods, Snail Family Transcription Factors metabolism, Triple Negative Breast Neoplasms pathology, Zinc Finger E-box-Binding Homeobox 1 metabolism, Adaptor Proteins, Signal Transducing metabolism, Apoptosis Regulatory Proteins metabolism, Brain Neoplasms metabolism, Cilia enzymology, Glioblastoma metabolism, Signal Transduction genetics, Triple Negative Breast Neoplasms metabolism
- Abstract
By regulating several hallmarks of cancer, BAG3 exerts oncogenic functions in a wide variety of malignant diseases including glioblastoma (GBM) and triple-negative breast cancer (TNBC). Here we performed global proteomic/phosphoproteomic analyses of CRISPR/Cas9-mediated isogenic BAG3 knockouts of the two GBM lines U343 and U251 in comparison to parental controls. Depletion of BAG3 evoked major effects on proteins involved in ciliogenesis/ciliary function and the activity of the related kinases aurora-kinase A and CDK1. Cilia formation was significantly enhanced in BAG3 KO cells, a finding that could be confirmed in BAG3-deficient versus -proficient BT-549 TNBC cells, thus identifying a completely novel function of BAG3 as a negative regulator of ciliogenesis. Furthermore, we demonstrate that enhanced ciliogenesis and reduced expression of SNAI1 and ZEB1, two key transcription factors regulating epithelial to mesenchymal transition (EMT) are correlated to decreased cell migration, both in the GBM and TNBC BAG3 knockout cells. Our data obtained in two different tumor entities identify suppression of EMT and ciliogenesis as putative synergizing mechanisms of BAG3-driven tumor aggressiveness in therapy-resistant cancers., (© 2021 The Authors. Journal of Cellular Biochemistry Published by Wiley Periodicals LLC.)
- Published
- 2022
- Full Text
- View/download PDF
45. The deubiquitinase USP11 is a versatile and conserved regulator of autophagy.
- Author
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Basic M, Hertel A, Bajdzienko J, Bonn F, Tellechea M, Stolz A, Kern A, Behl C, and Bremm A
- Subjects
- Amyloid beta-Peptides genetics, Amyloid beta-Peptides metabolism, Animals, Caenorhabditis elegans genetics, Caenorhabditis elegans Proteins genetics, Cell Line, Gene Knockout Techniques, Humans, Peptide Fragments genetics, Peptide Fragments metabolism, Thiolester Hydrolases genetics, Autophagy, Caenorhabditis elegans enzymology, Caenorhabditis elegans Proteins metabolism, Thiolester Hydrolases metabolism
- Abstract
Autophagy is a major cellular quality control system responsible for the degradation of proteins and organelles in response to stress and damage to maintain homeostasis. Ubiquitination of autophagy-related proteins or regulatory components is important for the precise control of autophagy pathways. Here, we show that the deubiquitinase ubiquitin-specific protease 11 (USP11) restricts autophagy and that KO of USP11 in mammalian cells results in elevated autophagic flux. We also demonstrate that depletion of the USP11 homolog H34C03.2 in Caenorhabditis elegans triggers hyperactivation of autophagy and protects the animals against human amyloid-β peptide 42 aggregation-induced paralysis. USP11 coprecipitated with autophagy-specific class III phosphatidylinositol 3-kinase complex I and limited its interaction with nuclear receptor-binding factor 2, thus decreasing lipid kinase activity of class III phosphatidylinositol 3-kinase complex I and subsequent recruitment of effectors such as WD-repeat domain phosphoinositide-interacting proteins to the autophagosomal membrane. Accordingly, more WD-repeat domain phosphoinositide-interacting protein 2 puncta accumulated in USP11 KO cells. In addition, USP11 interacts with and stabilizes the serine/threonine kinase mechanistic target of rapamycin, thereby further contributing to the regulation of autophagy induction. Taken together, our data suggested that USP11 impinges on the autophagy pathway at multiple sites and that inhibiting USP11 alleviates symptoms of proteotoxicity, which is a major hallmark of neurodegenerative diseases., Competing Interests: Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
46. Serine-ubiquitination regulates Golgi morphology and the secretory pathway upon Legionella infection.
- Author
-
Liu Y, Mukherjee R, Bonn F, Colby T, Matic I, Glogger M, Heilemann M, and Dikic I
- Subjects
- Humans, Ubiquitination, Golgi Apparatus pathology, Legionella pathogenicity, Serine metabolism
- Abstract
SidE family of Legionella effectors catalyze non-canonical phosphoribosyl-linked ubiquitination (PR-ubiquitination) of host proteins during bacterial infection. SdeA localizes predominantly to ER and partially to the Golgi apparatus, and mediates serine ubiquitination of multiple ER and Golgi proteins. Here we show that SdeA causes disruption of Golgi integrity due to its ubiquitin ligase activity. The Golgi linking proteins GRASP55 and GRASP65 are PR-ubiquitinated on multiple serine residues, thus preventing their ability to cluster and form oligomeric structures. In addition, we found that the functional consequence of Golgi disruption is not linked to the recruitment of Golgi membranes to the growing Legionella-containing vacuoles. Instead, it affects the host secretory pathway. Taken together, our study sheds light on the Golgi manipulation strategy by which Legionella hijacks the secretory pathway and promotes bacterial infection., (© 2021. The Author(s).)
- Published
- 2021
- Full Text
- View/download PDF
47. Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis.
- Author
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Hinzke T, Kleiner M, Meister M, Schlüter R, Hentschker C, Pané-Farré J, Hildebrandt P, Felbeck H, Sievert SM, Bonn F, Völker U, Becher D, Schweder T, and Markert S
- Subjects
- Animals, Bacteria isolation & purification, Hydrothermal Vents microbiology, Bacterial Physiological Phenomena, Polychaeta microbiology, Symbiosis
- Abstract
The hydrothermal vent tubeworm Riftia pachyptila hosts a single 16S rRNA phylotype of intracellular sulfur-oxidizing symbionts, which vary considerably in cell morphology and exhibit a remarkable degree of physiological diversity and redundancy, even in the same host. To elucidate whether multiple metabolic routes are employed in the same cells or rather in distinct symbiont subpopulations, we enriched symbionts according to cell size by density gradient centrifugation. Metaproteomic analysis, microscopy, and flow cytometry strongly suggest that Riftia symbiont cells of different sizes represent metabolically dissimilar stages of a physiological differentiation process: While small symbionts actively divide and may establish cellular symbiont-host interaction, large symbionts apparently do not divide, but still replicate DNA, leading to DNA endoreduplication. Moreover, in large symbionts, carbon fixation and biomass production seem to be metabolic priorities. We propose that this division of labor between smaller and larger symbionts benefits the productivity of the symbiosis as a whole., Competing Interests: TH, MK, MM, RS, CH, JP, PH, HF, SS, FB, UV, DB, TS, SM No competing interests declared, (© 2021, Hinzke et al.)
- Published
- 2021
- Full Text
- View/download PDF
48. MiT/TFE factors control ER-phagy via transcriptional regulation of FAM134B.
- Author
-
Cinque L, De Leonibus C, Iavazzo M, Krahmer N, Intartaglia D, Salierno FG, De Cegli R, Di Malta C, Svelto M, Lanzara C, Maddaluno M, Wanderlingh LG, Huebner AK, Cesana M, Bonn F, Polishchuk E, Hübner CA, Conte I, Dikic I, Mann M, Ballabio A, Sacco F, Grumati P, and Settembre C
- Subjects
- Active Transport, Cell Nucleus, Animals, Basic Helix-Loop-Helix Leucine Zipper Transcription Factors genetics, Cell Nucleus genetics, Endoplasmic Reticulum genetics, HeLa Cells, Humans, Intracellular Signaling Peptides and Proteins genetics, Mechanistic Target of Rapamycin Complex 1 genetics, Mechanistic Target of Rapamycin Complex 1 metabolism, Membrane Proteins genetics, Mice, Oryzias, Autophagy, Basic Helix-Loop-Helix Leucine Zipper Transcription Factors metabolism, Cell Nucleus metabolism, Endoplasmic Reticulum metabolism, Intracellular Signaling Peptides and Proteins metabolism, Membrane Proteins metabolism, Signal Transduction
- Abstract
Lysosomal degradation of the endoplasmic reticulum (ER) via autophagy (ER-phagy) is emerging as a critical regulator of cell homeostasis and function. The recent identification of ER-phagy receptors has shed light on the molecular mechanisms underlining this process. However, the signaling pathways regulating ER-phagy in response to cellular needs are still largely unknown. We found that the nutrient responsive transcription factors TFEB and TFE3-master regulators of lysosomal biogenesis and autophagy-control ER-phagy by inducing the expression of the ER-phagy receptor FAM134B. The TFEB/TFE3-FAM134B axis promotes ER-phagy activation upon prolonged starvation. In addition, this pathway is activated in chondrocytes by FGF signaling, a critical regulator of skeletal growth. FGF signaling induces JNK-dependent proteasomal degradation of the insulin receptor substrate 1 (IRS1), which in turn inhibits the PI3K-PKB/Akt-mTORC1 pathway and promotes TFEB/TFE3 nuclear translocation and enhances FAM134B transcription. Notably, FAM134B is required for protein secretion in chondrocytes, and cartilage growth and bone mineralization in medaka fish. This study identifies a new signaling pathway that allows ER-phagy to respond to both metabolic and developmental cues., (© 2020 The Authors. Published under the terms of the CC BY 4.0 license.)
- Published
- 2020
- Full Text
- View/download PDF
49. Disrupting the LC3 Interaction Region (LIR) Binding of Selective Autophagy Receptors Sensitizes AML Cell Lines to Cytarabine.
- Author
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Putyrski M, Vakhrusheva O, Bonn F, Guntur S, Vorobyov A, Brandts C, Dikic I, and Ernst A
- Abstract
Short linear motifs (SLiMs) located in disordered regions of multidomain proteins are important for the organization of protein-protein interaction networks. By dynamic association with their binding partners, SLiMs enable assembly of multiprotein complexes, pivotal for the regulation of various aspects of cell biology in higher organisms. Despite their importance, there is a paucity of molecular tools to study SLiMs of endogenous proteins in live cells. LC3 interacting regions (LIRs), being quintessential for orchestrating diverse stages of autophagy, are a prominent example of SLiMs and mediate binding to the ubiquitin-like LC3/GABARAP family of proteins. The role of LIRs ranges from the posttranslational processing of their binding partners at early stages of autophagy to the binding of selective autophagy receptors (SARs) to the autophagosome. In order to generate tools to study LIRs in cells, we engineered high affinity binders of LIR motifs of three archetypical SARs: OPTN, p62, and NDP52. In an array of in vitro and cellular assays, the engineered binders were shown to have greatly improved affinity and specificity when compared with the endogenous LC3/GABARAP family of proteins, thus providing a unique possibility for modulating LIR interactions in living systems. We exploited these novel tools to study the impact of LIR inhibition on the fitness and the responsiveness to cytarabine treatment of THP-1 cells - a model for studying acute myeloid leukemia (AML). Our results demonstrate that inhibition of LIR of a single autophagy receptor is insufficient to sensitize the cells to cytarabine, while simultaneous inhibition of three LIR motifs in three distinct SARs reduces the IC
50 of the chemotherapeutic., (Copyright © 2020 Putyrski, Vakhrusheva, Bonn, Guntur, Vorobyov, Brandts, Dikic and Ernst.)- Published
- 2020
- Full Text
- View/download PDF
50. Wss1 Promotes Replication Stress Tolerance by Degrading Histones.
- Author
-
Maddi K, Sam DK, Bonn F, Prgomet S, Tulowetzke E, Akutsu M, Lopez-Mosqueda J, and Dikic I
- Subjects
- Hydroxyurea toxicity, Mutation genetics, Saccharomyces cerevisiae drug effects, DNA Replication drug effects, Histones metabolism, Proteolysis drug effects, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae physiology, Saccharomyces cerevisiae Proteins metabolism, Stress, Physiological drug effects
- Abstract
Timely completion of DNA replication is central to accurate cell division and to the maintenance of genomic stability. However, certain DNA-protein interactions can physically impede DNA replication fork progression. Cells remove or bypass these physical impediments by different mechanisms to preserve DNA macromolecule integrity and genome stability. In Saccharomyces cerevisiae, Wss1, the DNA-protein crosslink repair protease, allows cells to tolerate hydroxyurea-induced replication stress, but the underlying mechanism by which Wss1 promotes this function has remained unknown. Here, we report that Wss1 provides cells tolerance to replication stress by directly degrading core histone subunits that non-specifically and non-covalently bind to single-stranded DNA. Unlike Wss1-dependent proteolysis of covalent DNA-protein crosslinks, proteolysis of histones does not require Cdc48 nor SUMO-binding activities. Wss1 thus acts as a multi-functional protease capable of targeting a broad range of covalent and non-covalent DNA-binding proteins to preserve genome stability during adverse conditions., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
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