3,987 results on '"FENG Song"'
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2. miR-468-3p suppresses osteogenic differentiation of BMSCs by targeting Runx2 and inhibits bone formation
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Tao Fang, Ranxi Zhang, Feng Song, Xueru Chu, Qin Fu, and Qianqian Wu
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miR-468-3p ,Osteogenic differentiation ,Runx2 ,Bone formation ,Orthopedic surgery ,RD701-811 ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract An improved understanding of the molecular actions underpinning bone marrow mesenchymal stem cell (BMSC) differentiation could highlight new therapeutics for osteoporosis (OP). Current evidence indicates that microRNAs (miRNAs) exert critical roles in many biological systems, including osteoblast differentiation. In this study, we examined miR-468-3p effects on osteogenic differentiation (OD). Distinct miR-468-3p reductions were identified during OD. MiR-468-3p also suppressed BMSC OD in gain- and loss-of-function assays, while it negatively regulated Runx2 as shown by molecular, protein, and bioinformatics approaches. When Runx2 was inhibited by small-interfering RNA (siRNA), the inhibitory effects of miR-468-3p toward BMSC osteogenesis were considerably reversed. Also, silenced miR-468-3p in ovariectomized (OVX) and sham mice augmented bone mass (BM) and bone formation (BF) and improved trabecular (Tb) microarchitecture. Therefore, miR-468-3p is a novel Runx2 regulator with key physiological action in BF and OD.
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- 2024
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3. Research Progress of Silicon based Micro Ring Resonators
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HOU Linjun, FENG Song, OUYANG Jie, HU Xiangjian, LI Haojie, GUO Shaokai, LIU Yong, WANG Di, CHEN Menglin, FENG Lulu, ZHOU Ran, WU Jianyang, ZENG Yuling, and HE Xinyi
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MRR ,optical communication ,photonic devices ,SiP ,Applied optics. Photonics ,TA1501-1820 - Abstract
With the rapid growth of big data demand, electronic chips and their interconnection technologies cannot meet the requirements of high-speed data transmission and high energy efficiency in computing and storage systems. Compared to traditional electronic chips, Silicon based Photonic (SiP) integrated chips have lower costs, higher integration density, and larger communication capacity. Micro Ring Resonator (MRR), as an important optical device, has the advantages of high sensitivity, small size, and low power consumption, and is widely used in fields such as optical communication, optoelectronics, and sensors. MRR can be used for applications such as high-speed optical communication and optical signal processing. By injecting optical signals into the MRR, functions such as filtering, modulation, and amplification of optical signals can be achieved, thereby improving the transmission rate and reliability of optical communication. This article mainly summarizes the research progress of silicon based MRR at home and abroad from the perspectives of different structures and materials. It also analyzes the application limitations and performance effects of different structures on MRR, and compares the advantages and disadvantages of different materials in preparing MRR. The detailed horizontal and vertical comparison is made for the quality factor, free spectrum width, 3 dB bandwidth and other parameters that affect the device performance. This provides ideas for the further development of MRR photonic devices with higher integration and performance in the future.
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- 2024
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4. Effect of minocycline on polarization of types M1/M2 microglia in spinal cord in rats after spinal nerve ligation
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CHENG Zhihong, FENG Song, and WANG Xia
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minocycline ,cystatin f ,microglia ,spinal nerve ligation ,neuropathic pain ,stereology ,rats ,Medicine (General) ,R5-920 - Abstract
Objective To investigate the effect of minocycline (Mino) on the polarization of types M1/M2 microglia (pro- and anti-inflammatory type) in the spinal dorsal horn of rats with neuropathic pain (NP) induced by spinal nerve ligation (SNL) and its underlying mechanism. Methods A total of 36 adult male SD rats were randomly stratified into Sham-operation (Sham) group, SNL group and Mino+SNL group by stratified random sampling based on body weight. Mechanical pain threshold and cold nociceptive thresholds of rat hind paw were measured in 1 d before and 14 d after modelling. Spinal cord tissue at the lumbar 5 (L5) segment was taken at 14 d after modelling, and the total number of microglia as well as the numbers of M1 and M2 microglia in the spinal dorsal horn were measured with immunohistochemistry and stereology. With aid of bioinformatics techniques, the core target in the spinal cord, Cst7, was selected. Then, the protein levels of microglia marker Iba-1, M1 microglia marker iNOS, M2 microglia marker CD206, Cst7 encoded protein cystatin F (CF) and pathway CatS/CX3CL1/CX3CR1 were detected with Western blotting. The expression levels of TNF-α, IL-6 and IL-10 in the spinal cord tissues were measured with ELISA. Results The mechanical pain and cold nociceptive thresholds were both significantly higher in the M+SNL group than the SNL group at 7~14 d after modelling (P < 0.01). The total number of microglia and the numbers of M1/M2 microglia in the spinal dorsal horn as well as the expression levels of CatS, CX3CL1, CX3CR1, TNF-α, IL-6, and IL-10 in the spinal cord tissues were obviously increased, and the expression level of CF was notably decreased in the SNL model group than the Sham group (P < 0.01). While, Mino treatment remarkably reversed above phenomena, with decreased total number of microglia and number of M1 microglia as well as expression levels of CatS, CX3CL1, CX3CR1, TNF-α and IL-6, and increased number of M2 microglia as well as CF and IL-10 levels when compared with the SNL group (P < 0.05). Conclusion Mino alleviates SNL induced neuropathic pain, probably through up-regulating CF in the microglia, and thus inhibiting the CatS/CX3CL1/CX3CR1 signaling pathway, promoting the conversion of microglia from type M1 to M2 to balance the imbalance in the M1/M2 polarization, and thus reducing neuroinflammation.
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- 2024
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5. Testing plastomes and nuclear ribosomal DNA sequences as the next-generation DNA barcodes for species identification and phylogenetic analysis in Acer
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Ning Fu, Yong Xu, Lu Jin, Tian-Wen Xiao, Feng Song, Hai-Fei Yan, You-Sheng Chen, and Xue-Jun Ge
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Acer ,Plastome ,nrDNA ,Next-generation DNA barcodes ,Phylogeny ,Botany ,QK1-989 - Abstract
Abstract Background Acer is a taxonomically intractable and speciose genus that contains over 150 species. It is challenging to distinguish Acer species only by morphological method due to their abundant variations. Plastome and nuclear ribosomal DNA (nrDNA) sequences are recommended as powerful next-generation DNA barcodes for species discrimination. However, their efficacies were still poorly studied. The current study will evaluate the application of plastome and nrDNA in species identification and perform phylogenetic analyses for Acer. Result Based on a collection of 83 individuals representing 55 species (c. 55% of Chinese species) from 13 sections, our barcoding analyses demonstrated that plastomes exhibited the highest (90.47%) species discriminatory power among all plastid DNA markers, such as the standard plastid barcodes matK + rbcL + trnH-psbA (61.90%) and ycf1 (76.19%). And the nrDNA (80.95%) revealed higher species resolution than ITS (71.43%). Acer plastomes show abundant interspecific variations, however, species identification failure may be due to the incomplete lineage sorting (ILS) and chloroplast capture resulting from hybridization. We found that the usage of nrDNA contributed to identifying those species that were unidentified by plastomes, implying its capability to some extent to mitigate the impact of hybridization and ILS on species discrimination. However, combining plastome and nrDNA is not recommended given the cytonuclear conflict caused by potential hybridization. Our phylogenetic analysis covering 19 sections (95% sections of Acer) and 128 species (over 80% species of this genus) revealed pervasive inter- and intra-section cytonuclear discordances, hinting that hybridization has played an important role in the evolution of Acer. Conclusion Plastomes and nrDNA can significantly improve the species resolution in Acer. Our phylogenetic analysis uncovered the scope and depth of cytonuclear conflict in Acer, providing important insights into its evolution.
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- 2024
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6. Analysis of the complete genome sequence of Paenibacillus sp. lzh-N1 reveals its antagonistic ability
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Ee Li, Kaiquan Liu, Shuhan Yang, Ling Li, Kun Ran, Xiaoli Sun, Jie Qu, Li Zhao, Yuxiu Xin, Feng Zhu, Jingfang Ma, Feng Song, and Zhenghua Li
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Paenibacillus sp. ,Genome sequence ,Antagonistic ability ,Antifungal peptides ,Biofilm formation ,Quorum sensing ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Plant diseases caused by pathogenic fungi are devastating. However, commonly used fungicides are harmful to the environment, and some are becoming ineffective due to fungal resistance. Therefore, eco-friendly biological methods to control pathogenic fungi are urgently needed. Results In this study, a strain, Paenibacillus sp. lzh-N1, that could inhibit the growth of the pathogenic fungus Mycosphaerella sentina (Fr) Schrorter was isolated from the rhizosphere soil of pear trees, and the complete genome sequence of the strain was obtained, annotated, and analyzed to reveal the genetic foundation of its antagonistic ability. The entire genome of this strain contained a circular chromosome of 5,641,488 bp with a GC content of 45.50%. The results of species identification show that the strain belongs to the same species as P. polymyxa Sb3-1 and P. polymyxa CJX518. Sixteen secondary metabolic biosynthetic gene clusters were predicted by antiSMASH, including those of the antifungal peptides fusaricidin B and paenilarvins. In addition, biofilm formation-related genes containing two potential gene clusters for cyclic lactone autoinducer, a gene encoding S-ribosylhomocysteine lyase (LuxS), and three genes encoding exopolysaccharide biosynthesis protein were identified. Conclusions Antifungal peptides and glucanase biosynthesized by Paenibacillus sp. lzh-N1 may be responsible for its antagonistic effect. Moreover, quorum sensing systems may influence the biocontrol activity of this strain directly or indirectly.
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- 2024
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7. Bibliometric analysis of kinship analysis from 1960 to 2023: global trends and development
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Yanchen Liu, Chaoran Sun, Haoyuan Si, Zixuan Peng, Liya Gu, Xiangnan Guo, and Feng Song
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bibliometric analysis ,kinship analysis ,forensic genetics ,research trend ,forensic genealogy ,Genetics ,QH426-470 - Abstract
Kinship analysis is a crucial aspect of forensic genetics. This study analyzed 1,222 publications on kinship analysis from 1960 to 2023 using bibliometric analysis techniques, investigating the annual publication and citation patterns, most productive countries, organizations, authors and journals, most cited documents and co-occurrence of keywords. The initial publication in this field occurred in 1960. Since 2007, there has been a significant increase in publications, with over 30 published annually except for 2010. China had the most publications (n = 213, 17.43%), followed by the United States (n = 175, 14.32%) and Germany (n = 89, 7.28%). The United States also had the highest citation count. Sichuan University in China has the largest number of published articles. The University of Leipzig and the University of Cologne in Germany exhibit the highest total citation count and average citation, respectively. Budowle B was the most prolific author and Kayser M was the most cited author. In terms of publications, Forensic Science International-Genetics, Forensic Science International, and International Journal of Legal Medicine were the most prolific journals. Among them, Forensic Science International-Genetics boasted the highest h-index, citation count, and average citation rate. The most frequently cited publication was “Van Oven M, 2009, Hum Mutat”, with a total of 1,361 citations. The most frequent co-occurrence keyword included “DNA”, “Loci”, “Paternity testing”, “Population”, “Markers”, and “Identification”, with recent interest focusing on “Kinship analysis”, “SNP” and “Inference”. The current research is centered around microhaplotypes, forensic genetic genealogy, and massively parallel sequencing. The field advanced with new DNA analysis methods, tools, and genetic markers. Collaborative research among nations, organizations, and authors benefits idea exchange, problem-solving efficiency, and high-quality results.
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- 2024
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8. The evolution of ephemeral flora in Xinjiang, China: insights from plastid phylogenomic analyses of Brassicaceae
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Tian-Wen Xiao, Feng Song, Duc Quy Vu, Ying Feng, and Xue-Jun Ge
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Ephemeral flora ,Brassicaceae ,Species assembly ,Divergence time ,Botany ,QK1-989 - Abstract
Abstract Background The ephemeral flora of northern Xinjiang, China, plays an important role in the desert ecosystems. However, the evolutionary history of this flora remains unclear. To gain new insights into its origin and evolutionary dynamics, we comprehensively sampled ephemeral plants of Brassicaceae, one of the essential plant groups of the ephemeral flora. Results We reconstructed a phylogenetic tree using plastid genomes and estimated their divergence times. Our results indicate that ephemeral species began to colonize the arid areas in north Xinjiang during the Early Miocene and there was a greater dispersal of ephemeral species from the surrounding areas into the ephemeral community of north Xinjiang during the Middle and Late Miocene, in contrast to the Early Miocene or Pliocene periods. Conclusions Our findings, together with previous studies, suggest that the ephemeral flora originated in the Early Miocene, and species assembly became rapid from the Middle Miocene onwards, possibly attributable to global climate changes and regional geological events.
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- 2024
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9. Comprehensive evaluation of morphological and physiological responses of seventeen Crassulaceae species to waterlogging and drainage under temperate monsoon climate
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Jie Zhang, Feng Song, Xiaolei Xu, Tiantian Xia, Xu Zhang, Li Dong, and Dejie Yin
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Waterlogging ,Crassulaceae ,Adventitious roots ,Antioxidant enzymes ,Botany ,QK1-989 - Abstract
Abstract Unpredictable rainfall frequently results in excess moisture, which is detrimental to the landscape because it interferes with the genetic, morphological, and physiological processes of plants, even though the majority of urban landscapes frequently experience moisture shortages. A study was conducted to analyze the effects of a 36-day waterlogging phase and a subsequent 12-day recovery period on the morpho-physiological responses of 17 Crassulaceae species with the goal of identifying those which were more tolerant of the conditions. Results revealed that waterlogging stress has an impact on all morpho-physiological parameters. Sensitive materials (S7, Hylotelephium telephium ‘Purple Emperor’ and S15, S. sexangulare) showed severe ornamental quality damage, mortality, decreases in total dry biomass, root-shoot ratio, and chlorophyll content, as well as higher MDA concentrations. Lower reductions in these parameters, along with improved antioxidant enzyme activities and greater recovery capabilities after drainage, were observed in the most tolerant materials S2 (H. spectabile ‘Brilliant’), S3 (H. spectabile ‘Carl’), and S5 (H. telephium ‘Autumn Joy’). Furthermore, with the exception of early death materials (S7 and S15), all materials showed varying intensities of adventitious root formation in response to waterlogging. The 17 species were divided into 4 clusters based on the comprehensive evaluation value. The first group included S1-S3, S5-S6, S8-S12, which were waterlogged tolerant with the highest values (0.63–0.82). S14 belongs to the intermediate waterlogging tolerant. S4, S13, S16, and S17 were clustered into the low waterlogging-tolerant group. S7 and S15 were the most susceptible to waterlogging. The survival and success of Crassulaceae species (especially, the first and second cluster), throughout this prolonged period of waterlogging (36 days) and recovery were attributed to a combination of physiological and morphological responses, indicating that they are an appealing species for the creation of rain gardens or obstructed drainage locations.
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- 2024
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10. A DNA barcode library for woody plants in tropical and subtropical China
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Lu Jin, Hao-You Shi, Ting Li, Nan Zhao, Yong Xu, Tian-Wen Xiao, Feng Song, Chen-Xin Ma, Qiao-Ming Li, Lu-Xiang Lin, Xiao-Na Shao, Bu-Hang Li, Xiang-Cheng Mi, Hai-Bao Ren, Xiu-Juan Qiao, Ju-Yu Lian, Hu Du, and Xue-Jun Ge
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Science - Abstract
Abstract The application of DNA barcoding has been significantly limited by the scarcity of reliable specimens and inadequate coverage and replication across all species. The deficiency of DNA barcode reference coverage is particularly striking for highly biodiverse subtropical and tropical regions. In this study, we present a comprehensive barcode library for woody plants in tropical and subtropical China. Our dataset includes a standard barcode library comprising the four most widely used barcodes (rbcL, matK, ITS, and ITS2) for 2,520 species from 4,654 samples across 49 orders, 144 families, and 693 genera, along with 79 samples identified at the genus level. This dataset also provides a super-barcode library consisting of 1,239 samples from 1,139 species, 411 genera, 113 families, and 40 orders. This newly developed library will serve as a valuable resource for DNA barcoding research in tropical and subtropical China and bordering countries, enable more accurate species identification, and contribute to the conservation and management of tropical and subtropical forests.
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- 2023
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11. Artemisia qingheensis (Asteraceae, Anthemideae), a new species from Xinjiang, China
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Guang-Zhao Jin, Mariya Sheludyakova, Wen-Jun Li, Feng Song, Zhi-Bin Wen, and Ying Feng
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Botany ,QK1-989 - Abstract
Artemisia qingheensis (Asteraceae, Anthemideae), a new species from Qinghe County, Xinjiang, China, is described and illustrated. We investigated its phylogenetic position and relationships with 35 other species of Artemisia using whole chloroplast DNA sequence data. The molecular phylogenetic results and morphological evidence (multi-layered involucral bracts and homogamous capitula with bisexual flowers) showed that the new species belongs to Artemisia subgenus Seriphidium. A diagnostic table and discussion of morphological characters are provided to distinguish the new species from A. amoena, A. gracilescens, A. lessingiana and A. terrae-albae.
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- 2023
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12. Consumption of milk and dairy products and risk of asthma in children: a systematic review and Meta-analysis
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Feng Song, Yang Xie, Nannan Guo, and Hulei Zhao
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Milk ,Dairy ,Asthma ,Meta-analysis ,Systematic review ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Some reports demonstrate that asthma benefits from milk and dairy products, however, the findings are controversial. We used meta-analysis as a tool to summarize published data on the association between dairy products consumption and asthma. Methods A systematic literature search was conducted to identify studies of dairy products and asthma in children in PubMed, ISI (Web of Science), and EMBASE until 21 July 2022. Random-effect meta-analyses with summarized data were performed for total (high/low) milk and dairy intake. Subgroup analysis was used to identify sources of variation in responses. Publication bias and sensitivity analysis were done to examine the stability of results. Results There was no correlation between consumption of dairy products and reduced risk of asthma (OR = 0.82; 95% CI: 0.60–1.05). Our results revealed that elevated consumption of milk and dairy has significant correlation with reduced risk of asthma in Non-Asian population (OR = 0.74; 95% CI = 0.51–0.96) and high quality studies (OR = 0.73; 95% CI = 0.50–0.95). No individual study influence and publication bias was seen in the sensitivity analysis and publication bias assessment. Conclusion There was no correlation between consumption of dairy products and reduced risk of asthma. However, we observed that elevated consumption of milk and dairy has significant correlation with reduced risk of asthma in Non-Asian population and high quality studies. More high-quality and population-specific studies should be conducted to determine the risk link between milk consumption and asthma in children.
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- 2023
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13. Characterization of loss of chromosome Y in peripheral blood cells in male Han Chinese patients with schizophrenia
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Lanrui Jiang, Mengyuan Song, Feng Song, Yuxiang Zhou, Hewen Yao, Gangqin Li, and Haibo Luo
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Loss of chromosome Y (LOY) ,Schizophrenia (SCZ) ,Droplet digital PCR (ddPCR) ,Age ,Psychiatry ,RC435-571 - Abstract
Abstract Background Schizophrenia (SCZ) has a global prevalence of 1% and increases the risk of mortality, reducing life expectancy. There is growing evidence that the risk of this disorder is higher in males than in females and it tends to develop in early adulthood. The Y chromosome is thought to be involved in biological processes other than sex determination and spermatogenesis. Studies have shown that loss of chromosome Y (LOY) in peripheral blood cells is associated with a variety of diseases (including cancer) and increased all-cause mortality. An analysis of the relationship between LOY and schizophrenia is warranted. Methods A total of 442 Chinese males (271 patients with schizophrenia vs. 171 controls) were included in this study. The copy numbers of the Y and X chromosomes were detected by positive droplets targeting the amelogenin gene (AMEL) on the Y chromosome and X chromosome (AMELY and AMELX, respectively), using droplet digital PCR (ddPCR). The LOY percentage was defined as the difference between the concentration of AMELX and the concentration of AMELY divided by the concentration of AMELX, denoted as (X - Y)/X. Results In the Han Chinese population, the LOY percentage was higher in the schizophrenia group than in the control group (p
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- 2023
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14. Expression Regulation of Gluconeogenesis Related Genes in Ovine Skeletal Muscle Cells
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Yue Pang, Sile Hu, Binhong Wen, Dubala Wu, Feng Song, Jun Yin, and Jianghong Wu
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glucose ,lactic acid ,ovine skeletal muscle cells ,gluconeogenesis ,Biochemistry ,QD415-436 ,Biology (General) ,QH301-705.5 - Abstract
Background: Under fasting conditions, the pathway converting gluconeogenesis precursors into muscle glycogen becomes crucial due to reduced glycogen reserves. However, there is limited research on skeletal muscle gluconeogenesis and the impact of fasting on gluconeogenic gene expression. Methods: Sheep fetal skeletal muscle cells cultured in vitro were used to study the effects of varying lactic acid concentrations (0 to 30 mM) and 2.5 mM glucose on the expression of gluconeogenesis-related genes after 6 h of fasting. The effects on mRNA and protein expression of key genes involved in skeletal muscle gluconeogenesis were measured by quantitative real time polymerase chain reaction (qRT-PCR), immunofluorescence, and western blotting at 48 h. Results: Fasting increased the expression of key gluconeogenic genes, fructose-1,6-bisphosphatase 2 (FBP2), glucose-6-phosphatase 3 (G6PC3), pyruvate kinase M (PKM), monocarboxylate transporter1 (MCTS1), glucose transporter type 4 (GLUT4), pyruvate carboxylase (PC), and lactate dehydrogenase A (LDHA). The mRNA levels of FBP2, G6PC3, and MCTS1 significantly decreased with glucose addition. Additionally, 10 mM lactic acid significantly promoted the expression of FBP2, PC, MCTS1, LDHA, GLUT4, and PKM while inhibiting phosphoenolpyruvate carboxykinase (PEPCK) expression. At the protein level, 10 mM lactic acid significantly increased FBP2 and PKM protein expression. Conclusions: This study shows that fasting regulates key gluconeogenic gene expression in sheep skeletal muscle cells and highlights the role of lactic acid in inducing these gene expressions.
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- 2024
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15. Sex estimation techniques based on skulls in forensic anthropology: A scoping review.
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Xindi Wang, Guihong Liu, Qiushuo Wu, Yazi Zheng, Feng Song, and Yuan Li
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Medicine ,Science - Abstract
BackgroundSex estimation is an essential topic in the field of individual identification in forensic anthropology. Recent studies have investigated a growing range of techniques for estimating sex from human skulls.ObjectivesThis study aims to provide a scoping review of the literature on techniques used in skull-based sex estimation, serving as a valuable reference for researchers.Sources of evidenceThe literature search was performed using PubMed, Scopus, and Web of Science from January 2020 to February 2024.Eligibility criteriaEligible studies have investigated issues of interest to forensic anthropology about sex estimation using skull samples.Charting methodsA total of 73 studies met the inclusion criteria and were categorized and analyzed based on the anatomic sites, modalities, trait types, and models. Their accuracy in estimating sex was subsequently examined, and the results were charted.Results and conclusionsOur review highlights that the 3D medical imaging technique has enhanced the efficiency and stability of skull-based sex estimation. It is anticipated that advancements in 3D imaging and computer vision techniques will facilitate further breakthroughs in this field of research.
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- 2024
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16. Developmental validation of the AGCU YNFS Y Kit: A new 6-dye multiplex system with 44 Y-STRs and 5 Y-InDels for forensic application.
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Chaoran Sun, Xindi Wang, Shuangshuang Wang, Yuxiang Zhou, Lanrui Jiang, Zefei Wang, Hewen Yao, Zhirui Zhang, Lagabaiyila Zha, Haibo Luo, and Feng Song
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Medicine ,Science - Abstract
With the widespread use of the Y chromosome in genetics, a lot of commercially available Y chromosome kits were developed, validated, and applied to forensic science practice. The AGCU YNFS Y Kit is a new Y chromosome system containing forty-four preferred Y short tandem repeats (Y-STRs) and five common Y-InDels. In this study, the AGCU YNFS Y system was validated to verify its performance by following the guidelines of the Scientific Working Group on DNA Analysis Methods (SWGDAM). A series of validation experiments included the following parameters: PCR-based studies, sensitivity studies, species specificity studies, stability studies, mixture studies, precision studies, stutter calculation, mutation and statistical analysis, population study, and case samples and degradation studies. The results suggested that appropriately changing PCR amplification conditions did not affect genotyping; the kit had good sensitivity for trace amounts of DNA (0.0625 ng), mixtures of multiple male individuals (minor: major = 1: 9), and three PCR inhibitors (more than 250 μM hematin, 250 ng/μL humic acid and 50 ng/μL tannic acid). The maximum standard deviation of allele size did not exceed 0.1552 reflecting the high accuracy of the system. By this, 87 DNA-confirmed pairs of father-son pairs were also analyzed for mutations. A total of 18 loci were mutated, with mutation rates ranging from 11.5×10-3 to 34.5×10-3 (95% CI 7.2×10-3-97.5×10-3, DYS627 and DYF404S1). In the population study, the haplotype diversity of 87 unrelated individuals was 0.9997, and discrimination capacity was 0.9885. Degradation studies have demonstrated that UV-C light exposure for up to 120 hours has no effect on male blood and semen-vaginal secretion mixtures. However, complete typing could no longer be obtained after 48 hours of UV exposure in single male saliva and in male saliva and female blood mixed samples. Collectively, the AGCU YNFS Y Kit is sensitive and accurate and can play its application value in forensic science practice.
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- 2024
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17. Flora diversity survey and establishment of a plant DNA barcode database of Lomas ecosystems in Peru
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Feng Song, Yun-Fei Deng, Hai-Fei Yan, Zhe-Li Lin, Amalia Delgado, Huber Trinidad, Paúl Gonzales-Arce, Sebastián Riva, Asunción Cano-Echevarría, Elmer Ramos, Yaquelin Pamela Aroni, Soledad Rivera, Mónica Arakaki, and Xue-Jun Ge
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Science - Abstract
Abstract Lomas formations or “fog oases” are islands of vegetation in the desert belt of the west coast of South America, with a unique vegetation composition among the world’s deserts. However, plant diversity and conservation studies have long been neglected, and there exists a severe gap in plant DNA sequence information. To address the lack of DNA information, we conducted field collections and laboratory DNA sequencing to establish a DNA barcode reference library of Lomas plants from Peru. This database provides 1,207 plant specimens and 3,129 DNA barcodes data corresponding with collections from 16 Lomas locations in Peru, during 2017 and 2018. This database will facilitate both rapid species identification and basic studies on plant diversity, thereby enhancing our understanding of Lomas flora’s composition and temporal variation, and providing valuable resources for conserving plant diversity and maintaining the stability of the fragile Lomas ecosystems.
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- 2023
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18. Comparative analysis of complete Artemisia subgenus Seriphidium (Asteraceae: Anthemideae) chloroplast genomes: insights into structural divergence and phylogenetic relationships
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Guangzhao Jin, Wenjun Li, Feng Song, Lei Yang, Zhibin Wen, and Ying Feng
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Compositae ,Comparative genomics ,Molecular markers ,Phylogenomics ,Botany ,QK1-989 - Abstract
Abstract Background Artemisia subg. Seriphidium, one of the most species-diverse groups within Artemisia, grows mainly in arid or semi-arid regions in temperate climates. Some members have considerable medicinal, ecological, and economic value. Previous studies on this subgenus have been limited by a dearth of genetic information and inadequate sampling, hampering our understanding of their phylogenetics and evolutionary history. We therefore sequenced and compared the chloroplast genomes of this subgenus, and evaluated their phylogenetic relationships. Results We newly sequenced 18 chloroplast genomes of 16 subg. Seriphidium species and compared them with one previously published taxon. The chloroplast genomes, at 150,586–151,256 bp in length, comprised 133 genes, including 87 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and one pseudogene, with GC content of 37.40–37.46%. Comparative analysis showed that genomic structures and gene order were relatively conserved, with only some variation in IR borders. A total of 2203 repeats (1385 SSRs and 818 LDRs) and 8 highly variable loci (trnK – rps16, trnE – ropB, trnT, ndhC – trnV, ndhF, rpl32 – trnL, ndhG – ndhI and ycf1) were detected in subg. Seriphidium chloroplast genomes. Phylogenetic analysis of the whole chloroplast genomes based on maximum likelihood and Bayesian inference analyses resolved subg. Seriphidium as polyphyletic, and segregated into two main clades, with the monospecific sect. Minchunensa embedded within sect. Seriphidium, suggesting that the whole chloroplast genomes can be used as molecular markers to infer the interspecific relationship of subg. Seriphidium taxa. Conclusion Our findings reveal inconsistencies between the molecular phylogeny and traditional taxonomy of the subg. Seriphidium and provide new insights into the evolutionary development of this complex taxon. Meanwhile, the whole chloroplast genomes with sufficiently polymorphic can be used as superbarcodes to resolve interspecific relationships in subg. Seriphidium.
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- 2023
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19. The complete chloroplast genome of an endangered plant Artemisia borotalensis (Asteraceae) and phylogenetic analysis
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Guang-Zhao Jin, Zhi-bin Wen, Feng Song, and Ying Feng
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artemisia borotalensis ,asteraceae ,complete chloroplast genome ,phylogenetic analysis ,Genetics ,QH426-470 - Abstract
Artemisia borotalensis Poljakov is an endemic and endangered herb in China. In this study, we sequenced and analyzed the complete chloroplast genome of this species. Sequencing revealed the genome to be 151,179 bp in length, containing a large single copy region (82,862 bp), a small single copy region (18,377 bp), and a pair of inverted repeat regions (24,970 bp each). Our analyses demonstrated that it contained 133 genes, including 87 protein-coding genes, 37 transfer RNA genes, eight ribosomal RNA genes, and one pseudogene (ycf1). Furthermore, we found the genome to have an overall GC content of 37.4%. A phylogenetic analysis indicated that A. borotalensis and A. maritima clustered together as sister group to A. annua and A. fukudo clade.
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- 2023
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20. Ultrasonic-pretreated hydrothermal synthesis of less dense zeolite CHA from the transformation of zeolite T
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Xiaoyan Yin, Ning Liu, Muhua Han, Fan Xu, Yun Jia, Feng Song, and Hongyou Cui
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Ultrasonic-pretreated ,Interzeolite ,Zeolite T ,Zeolite CHA ,Chemistry ,QD1-999 ,Acoustics. Sound ,QC221-246 - Abstract
Because of containing the same double 6-ring (D6R) building unit, the pure zeolite CHA with lower framework density (FDSi = 15.1 T/1000 Å3) has been transformed from zeolite T with higher framework density (FDSi = 16.1 T/1000 Å3) through ultrasonic-pretreated hydrothermal synthesis in MOH (KOH and NaOH) solution without adding organic template or seed crystals. Ultrasonic pretreatment facilitates the transformation rate and generates high-quality zeolite CHA. The ultrasound condition should be precisely controlled because that CHA phase is metastable, which is inclined to transform to other more stable phase. The ultrasonic conditions at 313 K and 333 K have been investigated in detail. In KOH solution, the ultrasonic treatment at 313 K can effectively restrain the generation of MER phase, however, it is hard to avoid the existence of MER phase when ultrasound temperature is 333 K. In NaOH solution, the samples with ultrasonic treatment of 313 K show the small particles size of about 1 μm, and the GIS framework topology starts to grow with the ultrasonic treatment of 333 K. The products prepared with the appropriate ultrasonic pretreatment represents smaller particles size, larger mesopore volume and higher CO2 adsorption capacity than the sample without the ultrasonic pretreatment. The structural evolution of interzeolite transformation has been explored by XRD, FT-IR and SEM observations. With the assistance of ultrasound, the parent zeolite T can quickly decompose into intermediate phase and then regenerate into CHA phase.
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- 2023
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21. A forensic population database of autosomal STR and X-STR markers in the Qiang ethnic minority of China
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Zefei Wang, Mengyuan Song, Qiang Lyu, Jun Ying, Qian Wu, Feng Song, Lanrui Jiang, Xiaowen Wei, Shuangshuang Wang, Fei Wang, Yuxiang Zhou, Xingbo Song, and Haibo Luo
- Subjects
Population genetics ,Short tandem repeat ,X chromosome ,Autosomal chromosome ,Allele frequency ,Interpopulation studies ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
The Qiang ethnic group is one of the oldest ethnic groups in China and is the most active ethnic group among all the populations along the Tibetan-Yi corridor. They have had a profound impact nationally and internationally. The paternal and maternal genetic feature of the Qiang ethnic group has been revealed, leaving the question of the genetic characteristics from autosomes and X chromosome not answered. The aim of this study was to explore the potential of 36 A-STR (Microreader™ 36A ID System) and 19 X-STR (Microreader™ 19X System) for application in the Qiang population and to elucidate their genetic diversity in southwest China. The cumulative probability of exclusion (CPE) for autosomal STRs is 1–1.3814 × 10−15 and the mean paternity exclusion chance (MEC) for X-STRs is 1–1.7323 × 10−6. Forensic parameters suggest that the STRs analyzed here are well-suited for forensic applications. The results of phylogenetic, interpopulation differentiation, and principal coordinates analysis (PCoA) indicate that the Qiang people have extensive connections with ethnic minorities in China, supporting the view that the Qiang people are the oldest group in the entire Sino-Tibetan language family. The Qiang appeared genetically more associated with most ethnic groups in China, especially the Han. The calculation of random matching probability (RMP) was improved by Fst correction of allele frequencies to make RMP more accurate and reasonable. This study can fill in the gaps in the Qiang STR reference database, providing valuable frequency data for forensic applications and evidence for the Qiang's genetic pattern as an important ancestral position in the Sino-Tibetan populations.
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- 2023
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22. Comprehensive insights into the genetic background of Chinese populations using Y chromosome markers
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Jienan Li, Feng Song, Min Lang, and Mingkun Xie
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Y-STR ,Y haplogroups ,paternal lineages ,Chinese ,genetic markers ,Science - Abstract
China is located in East Asia. With a high genetic and cultural diversity, human migration in China has always been a hot topic of genetics research. To explore the origins and migration routes of Chinese males, 3333 Chinese individuals (Han, Hui, Mongolia, Yi and Kyrgyz) with 27 Y-STRs and 143 Y-SNPs from published literature were analysed. Our data showed that there are five dominant haplogroups (O2-M122, O1-F265, C-M130, N-M231, R-M207) in China. Combining analysis of haplogroup frequencies, geographical positions and time with the most recent common ancestor (TMRCA), we found that haplogroups C-M130, N-M231 and R1-M173 and O1a-M175 probably migrated into China via the northern route. Interestingly, we found that haplogroup C*-M130 in China may originate in South Asia, whereas the major subbranches C2a-L1373 and C2b-F1067 migrated from northern China. The results of BATWING showed that the common ancestry of Y haplogroup in China can be traced back to 17 000 years ago, which was concurrent with global temperature increases after the Last Glacial Maximum.
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- 2023
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23. Development of a behavior change intervention to improve physical activity adherence in individuals with metabolic syndrome using the behavior change wheel
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Dandan Chen, Hui Zhang, Nianqi Cui, Feng Song, Leiwen Tang, Jing Shao, Jingjie Wu, Pingping Guo, Na Liu, Xiyi Wang, and Zhihong Ye
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Metabolic syndrome ,Physical activity adherence ,Behavioral Change Wheel ,Mobile health ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Adherence to physical activity is inadequate in adults with metabolic syndrome. Adherence to physical activity recommendations is crucial and can result in improved health outcomes and reduced medical burdens. A comprehensive behavior change intervention, including identifying determinants of adherence to physical activity recommendations, intervention options, intervention content and implementation options, was imperative for enhancing physical activity adherence. The aim of the study is to develop an intervention to increase physical activity adherence among individuals with metabolic syndrome. Methods The study followed the eight steps of the Behavior Change Wheel guide, including defining the problem in behavioral terms (Step 1), selecting target behavior (Step 2), specifying target behavior (Step 3), identifying what needs to change (Step 4), identifying intervention functions (Step 5), identifying policy categories (Step 6), identifying behavior change techniques (Step 7), and determining model of delivery (Step 8). The semi-structured, in-depth interviews were employed to identify the determinants of adherence to physical activity among twenty-eight individuals with metabolic syndrome based on capability, opportunity, motivation and behavior model. Next, the intervention functions and policy categories were chosen to address these determinants. Finally, behavior change techniques were selected to assist in the delivery of the intervention functions and be translated into intervention content. Results Our study identified eighteen facilitators and fifteen barriers to physical activity adherence. It resulted in the selection of seven intervention functions and nineteen behavior change techniques for the intervention program. Then, the current study identified an app as the delivery mode. Finally, a behavioral change intervention was generated for individuals with metabolic syndrome to increase physical activity recommendation adherence. Conclusions The Behavior Change Wheel provided a systematic approach to designing a behavior change intervention, which helped improve the health outcomes and reduce medical burdens and economic burdens among individuals with metabolic syndrome. The findings suggested that potential intervention should pay special attention to increasing knowledge in metabolic syndrome, imparting skills of physical activity, offering a supportive environment, and providing suggestions on regular physical activity using the appropriate behavior change techniques. A feasibility study will be undertaken to assess the acceptability and effectiveness of the intervention program in the future.
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- 2022
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24. Mutation analysis for newly suggested 30 Y-STR loci with high mutation rates in Chinese father-son pairs
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Fei Wang, Feng Song, Xindi Wang, Mengyuan Song, Yuxiang Zhou, Jing Liu, Zheng Wang, and Yiping Hou
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Medicine ,Science - Abstract
Abstract Rapidly mutating Y-STRs (RM Y-STRs) harbor great potential to distinguish male relatives and achieve male identification. However, forensic applications were greatly limited by the small number of the initially identified 14 RM Y-STRs. Recently, with the emergence of 12 novel RM Y-STRs, an integrated panel named RMplex was introduced, which contains all 26 RM Y-STRs and four fast mutating Y-STRs (FM Y-STRs). To obtain the first data on the mutation rates and father-son differentiation rates of the 30 newly proposed Y-STRs in Chinese populations, we performed an empirical mutation study on 307 DNA-confirmed Chinese paternal pairs. Previously reported mutation rates for 14 RM Y-STRs in Chinese and European populations were pooled and merged with our data. The highest meiosis number for the two groups reached 4771 and 2687, respectively. Five loci showed significant differences between the populations (DYS570, DYS399S1, DYS547, DYS612, and DYF403S1b). For the new panel covering 30 Y-STR loci, our results show extensive differences in the mutation rates between the two populations, as well. 10 RM Y-STR loci showed relatively low mutation rates (10–3–10–2 per meiosis) and 2 FM Y-STR loci had rapid mutation rates (> 10–2 per meiosis) in the Chinese population. Several-fold differences in mutation rates were found in nine Y-STR loci between the Chinese and reference populations, with two loci having significantly higher mutation rates and one locus with a significantly lower mutation rate in the Chinese population (P 10–2 per meiosis), 8 FM Y-STR loci (5×10–3-10–2 per meiosis), 3 moderately mutating Y-STRs (MM Y-STRs, 10–3-5×10–3 per meiosis), and one locus with no observed mutation events were identified in the Chinese population. 40.06% of the Chinese paternity pairs were discriminated with RMplex while only 20.84% with the initial 14 RM Y-STRs, indicating that RMplex is beneficial for distinguishing paternally related males. Future studies on populations of different genetic backgrounds are necessary to obtain comprehensive estimates of mutation rates at these new loci.
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- 2022
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25. Assess the diversity of gut microbiota among healthy adults for forensic application
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Shuangshuang Wang, Feng Song, Haoyu Gu, Zhilong Shu, Xiaowen Wei, Ke Zhang, Yuxiang Zhou, Lanrui Jiang, Zefei Wang, Jienan Li, Haibo Luo, and Weibo Liang
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Gut microbiota ,Forensic science ,Microbiota diversity ,16S rRNA ,Microbiology ,QR1-502 - Abstract
Abstract Background Human gut microbiota is individually unique that hints the microbiota in fecal traces left in the crime scene could act as a potential biomarker for forensic personal identification. Next-generation DNA sequencing and bioinformatic analysis of fecal samples are revolutionizing our insights into gut microbial communities. While the formation of the gut microbiota is known to be multifactorial, it is unclear whether these characteristics can be applied to forensic applications. Therefore, the gut microbiota of healthy adults with different traits was investigated in this study. Results Based on the STAMP analysis of each study group, the difference in gut microbiota composition of male and female subjects was observed. The male group was characterized by taxa in the phylum Proteobacteria, while the female group was described by Synergistetes phylum. The gut bacterial community assembly mechanism was mainly affected by the deterministic process. In addition, gut microbiota composition showed meaningful discrimination in each of the BMI groups. At the phylum level, in male subjects, increased representative phyla were Patescibacteria (p
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- 2022
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26. A bibliometric analysis of microbial forensics from 1984 to 2022: progress and research trends
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Xiangnan Guo, Liya Gu, Yue Luo, Shuangshuang Wang, Haibo Luo, and Feng Song
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microbial forensics ,forensic science ,bibliometric ,progress ,research trend ,Microbiology ,QR1-502 - Abstract
Microbial forensics is a rapidly evolving discipline that has gained significant momentum in recent years. The study evaluated relevant results over the last four decades from 1984 to 2022 all over the world, aiming to analyze the growing trends and research orientations of microbial forensics. Using “microbial forensics” as the search topic in the Web of Science Core Collection, the systematic retrieval identified 579 documents relevant to the field and draw many statistical tables and maps to make the retrieval results visible. According to further bibliometric analysis, there are an increasing number of publications related to microbial forensics from the overall trend, with the highest number of publications recorded in 2021. In terms of the total number of articles, the USA and China were both the leading contributors to the field among 40 countries. The field has developed rapidly in recent years based on the development of next-generation sequencing. Over the course of its development, there are rich keywords in the research of scholars, which focus on diversity and identification. Moreover, despite the early hot topic being PCR (the use of PCR to probe microorganisms), in recent years, the topics, markers, and the potential application of microorganisms in forensic practice have become hot, which also indicates the future research directions of microbial forensic.
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- 2023
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27. Genome-wide identification and expression analysis of AUX/LAX family genes in Chinese hickory (Carya cathayensis Sarg.) Under various abiotic stresses and grafting
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Ying Yang, Jiayan Wang, Yan Xu, Farhat Abbas, Dongbin Xu, Shenchen Tao, Xiaoting Xie, Feng Song, Qiaoyu Huang, Anket Sharma, Luqing Zheng, Daoliang Yan, Xiaofei Wang, Bingsong Zheng, Huwei Yuan, Rongling Wu, and Yi He
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auxin ,AUX/LAX ,Carya cathayensis ,drought ,grafting ,salt ,Plant culture ,SB1-1110 - Abstract
Auxin is essential for regulating plant growth and development as well as the response of plants to abiotic stresses. AUX/LAX proteins are auxin influx transporters belonging to the amino acid permease family of proton-driven transporters, and are involved in the transport of indole-3-acetic acid (IAA). However, how AUX/LAX genes respond to abiotic stresses in Chinese hickory is less studied. For the first time identification, structural characteristics as well as gene expression analysis of the AUX/LAX gene family in Chinese hickory were conducted by using techniques of gene cloning and real-time fluorescent quantitative PCR. Eight CcAUX/LAXs were identified in Chinese hickory, all of which had the conserved structural characteristics of AUX/LAXs. CcAUX/LAXs were most closely related to their homologous proteins in Populus trichocarpa , which was in consistence with their common taxonomic character of woody trees. CcAUX/LAXs exhibited different expression profiles in different tissues, indicating their varying roles during growth and development. A number of light-, hormone-, and abiotic stress responsive cis-acting regulatory elements were detected on the promoters of CcAUX/LAX genes. CcAUX/LAX genes responded differently to drought and salt stress treatments to varying degrees. Furthermore, CcAUX/LAX genes exhibited complex expression changes during Chinese hickory grafting. These findings not only provide a valuable resource for further functional validation of CcAUX/LAXs, but also contribute to a better understanding of their potential regulatory functions during grafting and abiotic stress treatments in Chinese hickory.
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- 2023
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28. Establishment of a rat model of infrarenal abdominal aortic aneurysm via retroperitoneal approach
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ZHU Junxing, TANG Quanqiao, FENG Song, and SHI Xingchi
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abdominal aortic aneurysm ,animal model ,retroperitoneal approach ,elastase ,calcium chloride ,Medicine (General) ,R5-920 - Abstract
Objective To establish a simple and stable model of infrarenal abdominal aortic aneurysm in rats by retroperitoneal approach. Methods Twenty healthy adult SD rats were randomly divided into model and control group depending on a ratio of male to female at 1∶1, with 10 rats in each group. The infrarenal abdominal aorta was freed via the retroperitoneal approach in both groups. Then, in the model group, 0.1 mL elastase (about 5 U) was infused into the cavity for 20 min and 1.0 mol/L calcium chloride was infiltrated outside the cavity for 10 min. However, normal saline was used instead of elastase and calcium chloride in the control group. Abdominal aortic specimens were collected by laparotomy in 4 weeks after surgery. The diameter of the abdominal aorta was measured with vernier caliper during and after operation. The abdominal aortic diameter dilated by more than 50% or the aneurysm ruptured 4 weeks after operation is the diagnostic standard for abdominal aortic aneurysm. HE, EVG, Masson and immunohistochemical (IHC) staining were performed to observe the pathohistological changes of abdominal aorta in both groups. Results The surgical success rate was 100%, survival rate was 100%, and tumor formation rate was 0% in the rats of the control group, while the rates were 100%, 80%, and 80% respectively in the model group. Significant difference was seen in the rate of tumor formation between the 2 groups (P < 0.05). There was no statistical difference in the diameter of abdominal aorta between the 2 groups before operation (P>0.05), and in 4 weeks after operation, the diameter was obviously larger and the expansion rate was higher in the model group than in the control group (P < 0.05). In the model group, the abdominal aorta was spindle-shaped or cystic dilatation, obvious adhesion was observed around the abdominal aorta in the perfusion segment, and local calcification was seen. HE staining showed that the thickness of the vessel wall was significantly thinner in the model group than in the control group (P < 0.05). EVG staining displayed that the content of vascular elastic fibers was significantly lower in the model group than the control group (P < 0.05). Masson staining indicated that the content of vascular collagen fibers was significantly lower in the model group than the control group (P < 0.05). IHC staining for smooth muscle cells showed that the content of smooth muscle cells was significantly lower in the model group than the control group (P < 0.05). Conclusion Retroperitoneal approach in combination of intracavitary elastase perfusion and extracavitary calcium chloride infiltration can simply and effectively construct a stable, reproducible and humanoid rat of model infrarenal abdominal aortic aneurysm.
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- 2021
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29. Analysis of the key points of neuroendoscopic transcranial resection for cerebellopontine angle tumors
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DING Wei, GONG Xuan, YANG Kui, LI Chun⁃tao, FENG Song⁃shan, HUANG Zheng, ZHOU Hong⁃shu, LIU Zhi⁃xiong, and LI Zhen⁃yan
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brain neoplasms ,cerebellopontine angle ,neuroendoscopes ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Objective To summarize the key points of neuroendoscopic transcranial resection for cerebellopontine angle (CPA) tumors. Methods Twenty⁃eight patients with CPA tumors diagnosed and treated in Xiangya Hospital Central South University from January 2019 to December 2020 were included, and all of them underwent neuroendoscopic transcranial surgery to remove CPA tumors. Results All the 28 patients were successfully treated with neuroendoscopic transcranial resection of tumors in CPA region, and the tumors were totally removed. After operation, 9 cases of acoustic neuroma, 8 cases of meningioma, 9 cases of cholesteatoma, one case of hemangioblastoma, and one case of trigeminal neurinoma were confirmed by postoperative pathology. Postoperative facial nerve function was grade Ⅲ in 3 cases, grade Ⅱ in 6 cases, and grade Ⅰ in 19 cases. One patient had no obvious recovery of auditory nerve function injury, and 2 patients had dizziness, vertigo and nausea after operation. No complications such as cerebrospinal fluid leakage, meningitis and incision infection occurred, and no death occurred. At 3 months of follow ⁃ up, no tumor recurrence was seen on MRI, and no new neurological symptoms occurred. Conclusions Neuroendoscopic transcranial resection of CPA tumors has many advantages, but also has some shortcomings, and has a good development in the future.
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- 2021
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30. Design and Fabrication of a Liver-on-a-chip Reconstructing Tissue-tissue Interfaces
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Jing Liu, Chong Feng, Min Zhang, Feng Song, and Haochen Liu
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tissue-tissue interfaces ,vascularized liver tissue ,substance concentration gradient ,bilayer microspheres ,organ-on-chip ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Despite the rapid advances in the liver-on-a-chip platforms, it remains a daunting challenge to construct a biomimetic liver-on-a-chip for in vitro research. This study aimed to reconstruct the tissue-tissue interfaces based on bilayer microspheres and form vascularized liver tissue. Firstly, we designed a tri-vascular liver-on-a-chip (TVLOC) comprising a hepatic artery, a portal vein and a central vein, and theoretically analyzed the distribution of velocity and concentration fields in the culture area. Secondly, we designed a bilayer microsphere generating microsystem based on the coaxial confocal principle, which is primarily used to produce bilayer microspheres containing different kinds of cells. Finally, the bilayer microspheres were co-cultured with endothelial cells in the cell culture area of the TVLOC to form vascularized liver tissue, and the cell viability and vascular network growth were analyzed. The results revealed that the TVLOC designed in this study can provide a substance concentration gradient similar to that of the liver microenvironment, and the bilayer microspheres can form a three-dimensional (3D) orderly liver structure with endothelial cells. Such a liver-on-a-chip is capable of maintaining the function of hepatocytes (HCs) pretty well. This work provides full insights into further simulation of the liver-on-a-chip.
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- 2022
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31. Customized Barrier Membrane (Titanium Alloy, Poly Ether-Ether Ketone and Unsintered Hydroxyapatite/Poly-l-Lactide) for Guided Bone Regeneration
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Yilin Shi, Jin Liu, Mi Du, Shengben Zhang, Yue Liu, Hu Yang, Ruiwen Shi, Yuanyuan Guo, Feng Song, Yajun Zhao, and Jing Lan
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guided bone regeneration ,customized ,barrier membrane ,titanium alloy ,polyether ether ketone ,unsintered hydroxyapatite/poly-l-lactide ,Biotechnology ,TP248.13-248.65 - Abstract
Sufficient bone volume is indispensable to achieve functional and aesthetic results in the fields of oral oncology, trauma, and implantology. Currently, guided bone regeneration (GBR) is widely used in reconstructing the alveolar ridge and repairing bone defects owing to its low technical sensitivity and considerable osteogenic effect. However, traditional barrier membranes such as collagen membranes or commercial titanium mesh cannot meet clinical requirements, such as lack of space-preserving ability, or may lead to more complications. With the development of digitalization and three-dimensional printing technology, the above problems can be addressed by employing customized barrier membranes to achieve space maintenance, precise predictability of bone graft, and optimization of patient-specific strategies. The article reviews the processes and advantages of three-dimensional computer-assisted surgery with GBR in maxillofacial reconstruction and alveolar bone augmentation; the properties of materials used in fabricating customized bone regeneration sheets; the promising bone regeneration potency of customized barrier membranes in clinical applications; and up-to-date achievements. This review aims to present a reference on the clinical aspects and future applications of customized barrier membranes.
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- 2022
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32. The complete chloroplast genome of the ephemeral plant Isatis minima (brassicaceae) of northwest China
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Feng Song, Lu Jin, Xue-Jun Ge, and Ying Feng
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brassicaceae ,chloroplast genome ,ephemeral plants ,isatis minima ,Genetics ,QH426-470 - Abstract
The complete chloroplast genome of Isatis minima, a typical ephemeral plant of Brassicaceae in the Central Asia desert, was sequenced and characterized in this study. The genome 153,642 bp in size, contains a typical quadripartite genome organization including LSC and SSC regions of 83,423 bp and 17,709 bp, and two copies of the IR regions of 26,255 bp. It has 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Phylogenetic analysis fully resolved I. minima in a monophyletic clade with I. tinctoria. This bioinformatic data contributes to the phylogenetics systematics and evolutionary history of Brassicaceae.
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- 2021
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33. Graph-GIC: A Smart and Parallelized Geomagnetically Induced Current Modelling Algorithm Based on Graph Theory for Space Weather Applications
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Chen, Wen, Yuan, Ding, Feng, Xueshang, Poedts, Stefaan, Zou, Zhengyang, Feng, Song, Zhu, Yuxuan, and Yin, Tong
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Physics - Space Physics ,Physics - Geophysics - Abstract
Geomagnetically Induced Current (GIC) refers to the electromagnetic response of the Earth and its conductive modern infrastructures to space weather and would pose a significant threat to high-voltage power grids designed for the alternative current operation. To assess the impact of space weather on the power grid, one needs to calculate the GIC on a national or continental scale. In this study, we developed a smart and parallelized GIC modelling algorithm, Graph GIC. This algorithm deploys a graph representing a power grid in a single-line diagram, in which substations/transformers act as nodes and transmission lines as edges. With these denotations, a power grid and its electric parameters are mathematically represented with an adjacency matrix and an admittance matrix. We used sparse matrix and parallelisation techniques to expedite the intensive computation in cases of large-scale power grids. The Graph GIC was validated with a benchmark grid, applied to the GIC calculation of the 500 kV power grid of Guangdong, China, and conducted preliminary analysis on the grid's susceptibility to geomagnetic storms. The Graph GIC algorithm has the advantage of an intuitive and highly scalable graph representation of a power grid at any scale. It achieves high-accuracy calculation and a speedup of about 18 times after parallelisation. This algorithm could be applied to assess the impact of space weather on a power grid up to continental scales and could be incorporated into global space weather modelling frameworks., Comment: 19 pages, 10 figures
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- 2024
34. DFlow: Diverse Dialogue Flow Simulation with Large Language Models
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Du, Wanyu, Feng, Song, Gung, James, Sun, Lijia, Zhang, Yi, Mansour, Saab, and Qi, Yanjun
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Developing language model-based dialogue agents requires effective data to train models that can follow specific task logic. However, most existing data augmentation methods focus on increasing diversity in language, topics, or dialogue acts at the utterance level, largely neglecting a critical aspect of task logic diversity at the dialogue level. This paper proposes a novel data augmentation method designed to enhance the diversity of synthetic dialogues by focusing on task execution logic. Our method uses LLMs to generate decision tree-structured task plans, which enables the derivation of diverse dialogue trajectories for a given task. Each trajectory, referred to as a "dialog flow", guides the generation of a multi-turn dialogue that follows a unique trajectory. We apply this method to generate a task-oriented dialogue dataset comprising 3,886 dialogue flows across 15 different domains. We validate the effectiveness of this dataset using the next action prediction task, where models fine-tuned on our dataset outperform strong baselines, including GPT-4. Upon acceptance of this paper, we plan to release the code and data publicly., Comment: 16 pages
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- 2024
35. Transcriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
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Johnson, Connah G. M., Johnson, Zachary, Mackey, Liam S., Li, Xiaolu, Sadler, Natalie C., Zhang, Tong, Qian, Wei-Jun, Bohutskyi, Pavlo, Feng, Song, and Cheung, Margaret S.
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Quantitative Biology - Molecular Networks ,Quantitative Biology - Quantitative Methods - Abstract
We develop a systems approach based on an energy-landscape concept to differentiate interactions involving redox activities and conformational changes of proteins and nucleic acids interactions in multi-layered protein-DNA regulatory networks under light disturbance. Our approach is a data-driven modeling workflow using a physics-informed machine learning algorithm to train a non-linear mathematical model for interpreting gene expression dynamics and to lead discovery for protein regulators using redox proteome analysis. We distinguish light-responsive elements within central carbon metabolism pathways from independent variables like circadian time using the publicly available transcriptome datasets of Synechococcus elongatus over diel cycles responding to light perturbations. Our approach provides interpretable de novo models for elucidating events of reactions in complex regulatory pathways in response to stressful disturbance from the environment. We discovered protein regulators in response to light disturbance in the proteome analysis involving shifts in protein abundance as well as cysteine redox states under constant illumination and after two hours of darkness. We discovered significant shifts in cysteine redox states in regulatory proteins such as transcription sigma factors and metabolic enzymes in the oxidative pentose phosphate pathway and the Calvin-Benson cycle, while the changes in their protein abundance were minimal. These results indicate that regulatory dynamics in reductant generation link photo-induced electron transport pathways and redox metabolic pathways with circadian rhythms through fast redox-induced conformational changes or slow expression regulations across networks.
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- 2024
36. Structured List-Grounded Question Answering
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Sung, Mujeen, Feng, Song, Gung, James, Shu, Raphael, Zhang, Yi, and Mansour, Saab
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Computer Science - Computation and Language - Abstract
Document-grounded dialogue systems aim to answer user queries by leveraging external information. Previous studies have mainly focused on handling free-form documents, often overlooking structured data such as lists, which can represent a range of nuanced semantic relations. Motivated by the observation that even advanced language models like GPT-3.5 often miss semantic cues from lists, this paper aims to enhance question answering (QA) systems for better interpretation and use of structured lists. To this end, we introduce the LIST2QA dataset, a novel benchmark to evaluate the ability of QA systems to respond effectively using list information. This dataset is created from unlabeled customer service documents using language models and model-based filtering processes to enhance data quality, and can be used to fine-tune and evaluate QA models. Apart from directly generating responses through fine-tuned models, we further explore the explicit use of Intermediate Steps for Lists (ISL), aligning list items with user backgrounds to better reflect how humans interpret list items before generating responses. Our experimental results demonstrate that models trained on LIST2QA with our ISL approach outperform baselines across various metrics. Specifically, our fine-tuned Flan-T5-XL model shows increases of 3.1% in ROUGE-L, 4.6% in correctness, 4.5% in faithfulness, and 20.6% in completeness compared to models without applying filtering and the proposed ISL method.
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- 2024
37. Bilateral-pectoral major muscle advancement flap combined with vacuum-assisted closure therapy for the treatment of deep sternal wound infections after cardiac surgery
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Feng Song and Zhenzhong Liu
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Cardiac surgery ,Deep sternal wound infections ,Bilateral-pectoral major muscle advancement flap ,Vacuum-assisted closure therapy ,Surgery ,RD1-811 ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Objectives The median sternotomy is the most common surgical approach for cardiac surgery. Deep sternal wound infection is a fatal complication after median sternotomy. The aim of this study was to evaluate the therapeutic effect of Bilateral-pectoral major muscle advancement flap combined with Vacuum-assisted closure therapy on rehabilitation for the treatment of deep sternal wound infection after cardiac surgery. Methods Between January 2016 to January 2018, 21 patients (10 males, 11 females) with deep sternal wound infection after cardiac surgery underwent Bilateral-pectoral major muscle advancement flap combined with Vacuum-assisted closure therapy. These patients were followed-up 12 months postoperative. The patient characteristics, duration of vacuum-assisted closure therapy, the mean hospital stay, postoperative complications, long-term survival of patients were retrospectively analyzed. Results Most patients undergone 1–3 times vacuum-assisted closure treatment sessions before closure. All patients were cured to discharge, the mean hospital stay was 21.1 days. Most patients’ healing wounds were first-stage healing, only one patient’s wound was second-stage healing, none was third-stage healing. One patient developed pulmonary infection and respiratory failure during the 12-month follow-up. None of the patients died during follow-up. Conclusions Bilateral-pectoral major muscle advancement flap combined with Vacuum-assisted closure therapy for the treatment of deep sternal wound infections after cardiac surgery can shorten the hospital stays and few complications. However, this is a retrospective case series presentation with no comparison group, the number of inferences is limited, so further large-scale controlled studies are needed.
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- 2020
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38. Complete plastome sequencing resolves taxonomic relationships among species of Calligonum L. (Polygonaceae) in China
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Feng Song, Ting Li, Kevin S. Burgess, Ying Feng, and Xue-Jun Ge
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Calligonum ,DNA barcodes ,Plastid genome ,Species resolution ,Botany ,QK1-989 - Abstract
Abstract Background Calligonum (Polygonaceae) is distributed from southern Europe through northern Africa to central Asia, and is typically found in arid, desert regions. Previous studies have revealed that standard DNA barcodes fail to discriminate Calligonum species. In this study, the complete plastid genomes (plastome) for 32 accessions of 21 Calligonum species is sequenced to not only generate the first complete plastome sequence for the genus Calligonum but to also 1) Assess the ability of the complete plastome sequence to discern species within the group, and 2) screen the plastome sequence for a cost-effective DNA barcode that can be used in future studies to resolve taxonomic relationships within the group. Results The whole plastomes of Calligonum species possess a typical quadripartite structure. The size of the Calligonum plastome is approximately 161 kilobase pairs (kbp), and encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Based on ML phylogenetic tree analyses, the complete plastome has higher species identification (78%) than combinations of standard DNA barcodes (rbcL + matK + nrITS, 56%). Five newly screened gene regions (ndhF, trnS-G, trnC-petN, ndhF-rpl32, rpl32-trnL) had high species resolution, where ndhF and trnS-G were able to distinguish the highest proportion of Calligonum species (56%). Conclusions The entire plastid genome was the most effective barcode for the genus Calligonum, although other gene regions showed great potential as taxon-specific barcodes for species identification in Calligonum.
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- 2020
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39. The impact of different feeds on DNA methylation, glycolysis/gluconeogenesis signaling pathway, and gene expression of sheep muscle
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Feng Song, Zaccheaus Pazamilala Akonyani, Ying Li, Deqiqige Su, Lantuya Wu, Yue Pang, Sile Hu, Dubala Wu, Chun Li, Ding Yang, and Jianghong Wu
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cAMP pathway ,DNA methylation ,Glucose metabolism ,Glycolysis/Gluconeogenesis ,Whole-genome bisulfite sequencing ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
DNA methylation is an important epigenetic regulatory form that regulates gene expression and tissue development. This study compared the effects of high fiber, low protein (HFLP) and low fiber, high protein (LFHP) diets on the DNA methylation profile of twin lambs’ muscles, their effect on glycolysis/gluconeogenesis and related pathways by transcriptome and deep whole-genome bisulfite sequencing (WGBS). Results identified 1,945 differentially methylated regions (DMRs) and 1,471 differentially methylated genes (DMGs). Also, 487 differentially expressed transcripts belonging to 368 differentially expressed genes (DEGs) were discovered between the twin lambs under different diets. Eleven overlapped genes were detected between the DEGs and the DMGs. FKBP5 and FOXO1 were detected to be significantly different. The FOXO1 regulated cAMP and the glycolysis/gluconeogenesis pathways. The glycolysis/gluconeogenesis, and the FOXO pathways were significantly enriched. The expressions of HOMER1 and FOXO1 in the HFLP group were significantly higher than those in the LFHP group. There is a significant correlation between the upregulated gene expression and hypomethylation of HOMER1 and FOXO1 gene in HFLP group. The results showed that FOXO1 induces PDK4 expression in muscle while regulating FKBP5 activity, which stimulates glucose production by activating specific gluconeogenesis target genes. The FOXO1 was able to regulate the glucose metabolism, the cAMP and the occurrence of glycolysis/gluconeogenesis pathways. This study showed that feed type can affect the methylation levels of the glycolysis related gluconeogenesis genes and interaction pathways, providing new ideas for a better understanding of the regulation of muscle energy metabolism and feed development.
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- 2022
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40. Comparative Evaluation of the Salivary and Buccal Mucosal Microbiota by 16S rRNA Sequencing for Forensic Investigations
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Shuangshuang Wang, Feng Song, Haoyu Gu, Xiaowen Wei, Ke Zhang, Yuxiang Zhou, and Haibo Luo
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oral bacterial community ,16S rRNA ,forensic science ,high-throughput sequencing ,saliva ,Microbiology ,QR1-502 - Abstract
The human microbiome has emerged as a new potential biomarker for forensic investigations with the development of high-throughput sequencing and bioinformatic analysis during the last decade. The oral cavity has many different microbial habitats, with each habit colonized by specific and individualized microbiota. As saliva and buccal mucosa are common biological evidence in forensic science, understanding the differences of microbial communities between the two is important for forensic original identification. Moreover, the oral microbiota is individualized, whereas there are few studies on the application of forensic personal identification that need to be supplemented. In this study, Streptococcus was the most abundant genus, with an average relative abundance of 49.61% in the buccal mucosa, while in the saliva, Streptococcus, Veillonella, and Neisseria had similar proportions (20%, 15%, 16%) and were the dominant genera. The α and β diversity displayed a significant distinctness between the saliva and buccal mucosal groups. The community assembly mechanism stated that the deterministic process played a more significant effect in shaping the salivary bacterial community assembly than buccal mucosa, which explained the microbial differences. Of the test samples, 93.3% can be correctly classified with the random forest model based on the microbial differences. Targeting the low-abundance bacteria at the species level, 52% of experimental participants could be discriminated by using the observed unique bacterial species. In conclusion, the salivary bacterial community composition differed from that of the buccal mucosa and showed high richness and diversity. With the random forest model, the microbiota of saliva and buccal mucosa can be classified, which can be used in identifying the source of oral biological trace. Furthermore, each individual has a unique bacterial community pattern, and the presence or absence of unique bacteria and differences in the composition of the core oral microbiota are the key points for forensic personal discrimination that supplement the study of oral microbial application to forensic personal discrimination. Whether for original identification or personal discrimination, the oral microbiome has great potential for application.
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- 2022
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41. The complete chloroplast genome of the desert shrub Nitraria sphaerocarpa (Nitrariaceae) and phylogenetic analysis
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Feng Song and Ying Feng
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chloroplast genome ,nitrariaceae ,nitraria sphaerocarpa ,phylogenetic analysis ,Genetics ,QH426-470 - Abstract
Nitraria sphaerocarpa Maxim. is a typical desert shrub commonly used as a sand binder. Here, we sequenced and characterized the whole plastid genome of N. sphaerocarpa. It is 159,369 bp in length, containing two copies of inverted repeat (IR) regions (26,566 bp, each), a large single-copy (LSC) region (87,854 bp), and a small single-copy (SSC) region (18,383 bp). It has 114 unigenes, including 79 protein-coding genes, 30 tRNA genes, four rRNA genes, and one pseudogene (infA). Phylogenetic analysis shows that N. sphaerocarpa is located at a basal position of the genus Nitraria.
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- 2021
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42. The LuxS/AI-2 Quorum-Sensing System Regulates the Algicidal Activity of Shewanella xiamenensis Lzh-2
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Jian Liu, Kaiquan Liu, Zhe Zhao, Zheng Wang, Fengchao Wang, Yuxiu Xin, Jie Qu, Feng Song, and Zhenghua Li
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quorum-sensing ,algicidal bacteria ,LuxS/AI-2 ,Shewanella xiamenensis ,bloom control ,Microbiology ,QR1-502 - Abstract
Cyanobacterial blooming is an increasing environmental issue all over the world. Algicidal bacteria are potential tools for the control of algal blooms. The algicidal activity in many bacteria exhibits quorum-sensing (QS) dynamics and the regulatory mechanism of this activity in these bacteria is unclear. In this study, combining genomic sequencing and genome editing, we have identified that the primary quorum-sensing system in the isolated algicidal strain Shewanella xiamenensis Lzh-2 is the LuxS/AI-2 signaling pathway. Disruption of the QS system through recombination deletion of the LuxS gene led to a loss of algicides production and algicidal activity. Restoration of the LuxS gene in the deletion mutant compensated the QS system and recovered the algicidal activity. Consequently, we proved that Lzh-2 regulates the algicidal activity through LuxS/AI-2 quorum-sensing system.
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- 2022
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43. Q-Switched and Mode-Locked Er-doped fiber laser based on MAX phase Ti2AlC saturable absorber
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Guoqing Sun, Ming Feng, Kang Zhang, Tianhao Wang, Yuanhao Li, Dongdong Han, Yigang Li, and Feng Song
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Nonlinear optical materials ,MAX phase materials ,Q-switched laser ,Mode-locked laser ,Fiber laser ,Physics ,QC1-999 - Abstract
MAX phase materials, exhibiting excellent antioxidation, corrosion resistance and high electrical and optical conductivity, attract much attention. The nonlinear optical properties of the MAX phase Ti2AlC was demonstrated by measuring the saturable absorption of Ti2AlC- polyvinyl (PVA) film. The modulation depth of the Ti2AlC-PVA film is calculated to be 2.21%. Stable Q-switched and mode-locked pulses train were achieved in Erbium-doped fiber ring cavity by using Ti2AlC-PVA film as a saturable absorber. The maximum single pulse energy of the Q-switched laser was 92.8 nJ, and the pulse width of the mode-locked laser was 680 fs. This study shows the great potential of MAX phase materials for ultrashort laser pulses generation and provides some valuable design guidelines for the preparation of SAs based on MAX phase materials.
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- 2021
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44. Using global sensitivity analysis to quantify the uncertainty of root reinforcement in vegetated slope stability
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Xian, Jiantang, Zhu, Jun, Leung, Anthony Kwan, Wu, Chenguang, Feng, Song, and Zhang, Jie
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- 2025
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45. Comparative Analysis of the Microbiota Between Rumen and Duodenum of Twin Lambs Based on Diets of Ceratoides or Alfalfa
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ZACCHEAUS PAZAMILALA AKONYANI, FENG SONG, YING LI, SUDE QIQIGE, and JIANGHONG WU
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correlation analysis ,digesta ,metabolome ,16S rRNA sequencing ,sheep ,Genetics ,QH426-470 ,Microbiology ,QR1-502 - Published
- 2021
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46. RETRACTED: Evaluation of a six‐dye multiplex composed of 27 markers for forensic analysis and databasing
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Shuangshuang Wang, Feng Song, Mingkun Xie, Ke Zhang, Bowen Xie, Zhanglong Huang, and Haibo Luo
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concordance study ,forensic science ,mixture study ,sensitivity ,short tandem repeat (STR) ,Genetics ,QH426-470 - Abstract
Abstract Background Short tandem repeat (STR) markers play a significant role in genetic applications and have proved to be effective for the personal identification in forensic medicine. In this study, a six‐dye multiplex composed of 23 autosomal STR loci (TH01, D3S1358, Penta D, D6S1043, D21S11, TPOX, D1S1656, D12S391, Penta E, D10S1248, D22S1045, D19S433, D8S1179, D2S1338, D2S441, D18S51, vWA, FGA, D16S539, CSF1PO, D13S317, D5S818, D7S820), one Y chromosome STR (DYS391), two internal quality control markers (Quality Sensor QS1 and QS2), and Amelogenin was evaluated. Methods Evaluation studies, including PCR‐based studies, sensitivity studies, species specificity studies, stability studies, DNA mixture studies, concordance studies, and precision evaluations were performed according to the guidelines of “Validation Guidelines for Forensic DNA Analysis Methods (2016)” by the Scientific Working Group on DNA Analysis Methods (SWGDAM). In addition, the forensic characteristics of 357 unrelated male samples from Han and Hui populations in China were investigated using 27 markers. Results Full STR profiles were obtained from different reaction volumes (5 ~ 25 μl), cycle numbers (28 ~ 34 cycles) and annealing temperatures (58 ~ 62°C). All STR profiles were obtained at humic acid concentration of up to 200 ng/μl and hematin concentration of up to 500 μM. No peaks were observed in most common animal samples except two innovative internal PCR controls (Quality Sensor QS1 and QS2). The six‐dye multiplex showed a notably high value for the combined probability of exclusion (CPE), exhibiting values of with 0.99999999977688 in the Han population and 0.999999999583875 in the Hui population. The values of combined probability of discrimination (CPD) were 0.999999999999999999999999999997453 in the Han population and 0. 999999999999999999999999999994398 in the Hui population. In addition, concordance studies showed that there was no difference with the AGCU Express Marker 22 Kit. Conclusion The results indicated that the Investigator® 26plex QS Kit is a robust, reliable, and suitable tool for forensic analysis and databasing.
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- 2020
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47. RETRACTED: Forensic features and genetic background exploration of a new 47‐autosomal InDel panel in five representative Han populations residing in Northern China
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Feng Song, Min Lang, Luyao Li, Haibo Luo, and Yiping Hou
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AGCU InDel 50 Kit ,forensic genetics ,genetic population analysis ,InDel ,Northern Han ,Genetics ,QH426-470 - Abstract
Abstract Background Insertion/deletion (InDel) analysis plays an indispensable role in human identification, population genetics, and biogeographic research. Profiles of individuals in forensic applications worldwide based on a set of autosomal InDel loci (A‐InDels) in human genomes have been widely used over the past few years. Methods The new AGCU InDel 50 Kit contains 47 well‐chosen A‐InDels, ensuring high discriminatory power, and the 2 Y chromosome InDel loci (Y‐InDels) are used for sex determination in case of allele dropout at Amelogenin. In this study, five Northern Han populations residing in different geographic areas of China were recruited and genotyped using the assay. Results After Bonferroni correction, all 47 A‐InDels were in accordance with the lack of significant departures of Hardy–Weinberg equilibrium in all loci and investigated groups. The combined probability of discrimination and the probability of exclusion in the Han population range from 1–3.2240 × 10–19 to 1–1.3030 × 10–19 and 0.9997, respectively. A comprehensive population genetic relationship investigation between Han Chinese and 26 worldwide populations based on allele frequency correlation was carried out. Our results revealed no significant genetic differentiation in Chinese Han groups. Hierarchical clustering, phylogenetic relationship reconstructions, multidimensional scaling, principal component analysis, and structure analysis were performed, and the results indicated that, genetically, Han populations are closely related to East Asians. Conclusion Overall, this novel 47 A‐InDel assay is a valuable tool that could potentially be used for forensic identification and parentage tests.
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- 2020
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48. Socio-economic factors affecting agro-forestry technology adoption in Nyando, Kenya
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Magugu John W., Feng Song, Huang Qiuqiong, and Ototo Gilbert O
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adoption ,agro-forestry technologies ,farmers ,socio-economic factors ,River, lake, and water-supply engineering (General) ,TC401-506 ,Irrigation engineering. Reclamation of wasteland. Drainage ,TC801-978 - Abstract
Agro-forestry (AFR) technologies are perceived to improve livelihoods and natural resource sustainability of the rural households. Despite their aggressive promotion by multiple national and international agencies, the adoption of AFR technologies has been minimal in Kenya. This study conducted a survey to examine the socio-economic factors that affect the adoption process in Nyando, Kenya. Results revealed that farmers with bigger farms and higher education were more likely to adopt the new technology. Additionally, farmers were quicker to adopt technology if they had an increase in crop yields and had stayed longer in the study area. Generally, wealthier famers tended to adopt more AFR technology than those with less income. Access to information was the only factor strongly correlated with the rest of the independent variables. The results suggest that, adoption would be more enhanced with a clear focus on extension activities, income enhancing AFR practices and soil amelioration technologies. This study may be replicated in other parts of Kenya and East Africa to improve the level of AFR technology adoption for sustainable rural development.
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- 2018
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49. Analysis of future climate scenarios and their impact on agriculture in eastern Arkansas, United States
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Magugu John W., Feng Song, Huang Qiuqiong, Zhang Yongjun, and West Grant H.
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agriculture ,climate change ,climate scenarios ,precipitation ,temperature ,River, lake, and water-supply engineering (General) ,TC401-506 ,Irrigation engineering. Reclamation of wasteland. Drainage ,TC801-978 - Abstract
Impact of climate change on crop growth is dynamic and difficult to quantify due to heterogeneity of the associated effects and their interactions within the Earth system. The main objective of this study is to establish how future climate change might affect agriculture, through an assessment of temperature and precipitation driven parameters. These include percentage number of rainy days with extreme precipitation, percentage of extreme precipitation relative to wet days, first fall frost days, last spring frost days, growing degree days, growing season length and the total precipitation. Results show modest increase in total precipitation with a slight increase in extreme precipitation, representing up to 2.2% increase by 2060 under representative concentration pathway (RCP 8.5) scenario. There would be late first fall frost days, early last spring frost days and increased growing season length by up to 2 weeks in 2060. The growing degree days are projected to increase under all scenarios for all crops, with cotton showing the largest increase of up to 37% relative to the baseline period.
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- 2018
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50. Radio Frequency Interference Detection Using Efficient Multi-Scale Convolutional Attention UNet
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Gu, Fei, Hao, Longfei, Liang, Bo, Feng, Song, Wei, Shoulin, Dai, Wei, Xu, Yonghua, Li, Zhixuan, and Dao, Yihang
- Subjects
Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Studying the universe through radio telescope observation is crucial. However, radio telescopes capture not only signals from the universe but also various interfering signals, known as Radio Frequency Interference (RFI). The presence of RFI can significantly impact data analysis. Ensuring the accuracy, reliability, and scientific integrity of research findings by detecting and mitigating or eliminating RFI in observational data, presents a persistent challenge in radio astronomy. In this study, we proposed a novel deep learning model called EMSCA-UNet for RFI detection. The model employs multi-scale convolutional operations to extract RFI features of various scale sizes. Additionally, an attention mechanism is utilized to assign different weights to the extracted RFI feature maps, enabling the model to focus on vital features for RFI detection. We evaluated the performance of the model using real data observed from the 40-meter radio telescope at Yunnan Observatory. Furthermore, we compared our results to other models, including U-Net, RFI-Net, and R-Net, using four commonly employed evaluation metrics: precision, recall, F1 score, and IoU. The results demonstrate that our model outperforms the other models on all evaluation metrics, achieving an average improvement of approximately 5\% compared to U-Net. Our model not only enhances the accuracy and comprehensiveness of RFI detection but also provides more detailed edge detection while minimizing the loss of useful signals.
- Published
- 2024
- Full Text
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