45 results on '"Fraser KM"'
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2. From temperate to tropical seas : drivers of variation in reef-associated epifaunal invertebrate communities
- Author
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Fraser, KM
- Abstract
Globally, shallow reef ecosystems are undergoing dramatic changes, largely due to unprecedented climate change and exacerbated by local anthropogenic drivers. These changes are generally mediated by habitat transformation, which has critical implications for ecological communities and food web dynamics, often beginning at basal trophic levels with flow-on effects throughout food webs. Small mobile invertebrates (‘epifauna’) inhabiting the surfaces of structurally diverse reef habitats are prolific and ubiquitous on reefs worldwide, representing an essential basal trophic group that fuels much of shallow reef food webs. This thesis examines the interactive influences of local and broad-scale drivers on epifaunal community composition, size structure and productivity on shallow reefs along a steep eastern Australian climatic gradient of 28.6° with mean annual temperature range of ~13°C. The overarching aim of this research is to understand how epifaunal communities vary across different reef habitat types, locations and latitudes, and environmental and ecological gradients, to better understand the broader ecological implications of ocean warming and local anthropogenic impacts on reef food webs. Habitat is identified as the most important correlate of variation in epifaunal assemblages regardless of latitude or the metric used to quantify assemblages. Macroalgae, live coral and turfing algae represent three habitat extremes in terms of the taxonomic composition of epifaunal assemblages they host, with assemblage variation shaped by structural differences among habitats. The three habitat extremes also apply to the size structure and daily productivity of epifaunal assemblages, both important ecological properties with regards to the availability of this trophic group at a critical basal level in shallow reef food webs. Despite distinct assemblage-habitat associations and the variation in dominant habitats across the latitudinal range studied – from cool-temperate macroalgae-dominated reefs to tropical coral reefs – daily community productivity of epifauna was largely invariant among sampling locations. On subtropical to tropical reefs, dramatically different epifaunal assemblages were evident on live versus dead coral habitat, with dead coral supporting density, biomass, and daily productivity of epifauna 1 – 2 orders of magnitude higher than live coral. These distinctions between broadly classified coral habitats were consistent among four heterogenous subtropical and tropical reef locations. Epifaunal communities apparently represent an important avenue for ecological change associated with coral mortality through mass bleaching events. Overall, my research strongly implies that habitat is the dominant driver of variation in reef-associated epifaunal assemblages. Broad-scale ocean warming and local anthropogenic stressors will likely influence changes to epifaunal assemblages on shallow reefs almost exclusively via transformation of habitats. The consistent trends across large biogeographic scales also suggest that accurate prediction of the basal food web resource provided by epifaunal invertebrates is possible when information on habitat distribution is available.
- Published
- 2021
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3. Taxonomic composition of mobile epifaunal invertebrate assemblages on diverse benthic microhabitats from temperate to tropical reefs
- Author
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Fraser, KM, primary, Stuart-Smith, RD, additional, Ling, SD, additional, Heather, FJ, additional, and Edgar, GJ, additional
- Published
- 2020
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4. Chemokine Dysregulation in Heterologous Viral-Bacterial Infection.
- Author
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Zavitz, CC, primary, Gaschler, GJ, additional, Bauer, CM, additional, Fraser, KM, additional, and Stampfli, MR, additional
- Published
- 2009
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5. Contextual cues facilitate dynamic value encoding in the mesolimbic dopamine system.
- Author
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Fraser KM, Collins V, Wolff AR, Ottenheimer DJ, Bornhoft KN, Pat F, Chen BJ, Janak PH, and Saunders BT
- Abstract
Adaptive behavior in a dynamic environmental context often requires rapid revaluation of stimuli that deviates from well-learned associations. The divergence between stable value-encoding and appropriate behavioral output remains a critical component of theories of dopamine's function in learning, motivation, and motor control. Yet, how dopamine neurons are involved in the revaluation of cues when the world changes, to alter our behavior, remains unclear. Here, we make use of a complementary set of in vivo approaches to clarify the contributions of the mesolimbic dopamine system to the dynamic reorganization of reward- seeking behavior. Male and female rats were trained to discriminate when a conditioned stimulus would be followed by a sucrose reward by exploiting the prior, non-overlapping presentation of a another discrete cue-an occasion setter. Only when the occasion setter's presentation preceded the conditioned stimulus did the conditioned stimulus predict sucrose delivery, dissociating the average value of the conditioned stimulus from its immediate value, on a trial-to-trial basis. Activity of ventral tegmental area dopamine neurons was essential for rats to successfully update behavioral response to the occasion setter. Moreover, dopamine release in the nucleus accumbens following the conditioned stimulus only occurred when the occasion setter indicated it would predict reward and did not reflect its average expected value. Downstream of dopamine release, we found that neurons in the nucleus accumbens dynamically tracked the value of the conditioned stimulus. Together, these results help refine notions of dopamine function, revealing a prominent contribution of the mesolimbic dopamine system to the rapid revaluation of motivation., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2025
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6. Encoding and context-dependent control of reward consumption within the central nucleus of the amygdala.
- Author
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Fraser KM, Kim TH, Castro M, Drieu C, Padovan-Hernandez Y, Chen B, Pat F, Ottenheimer DJ, and Janak PH
- Abstract
Dysregulation of the central amygdala is thought to underlie aberrant choice in alcohol use disorder, but the role of central amygdala neural activity during reward choice and consumption is unclear. We recorded central amygdala neurons in male rats as they consumed alcohol or sucrose. We observed activity changes at the time of reward approach, as well as lick-entrained activity during ongoing consumption of both rewards. In choice scenarios where rats could drink sucrose, alcohol, or quinine-adulterated alcohol with or without central amygdala optogenetic stimulation, rats drank more of stimulation-paired options when the two bottles contained identical options. Given a choice among different options, central amygdala stimulation usually enhanced consumption of stimulation-paired rewards. However, optogenetic stimulation during consumption of the less-preferred option, alcohol, was unable to enhance alcohol intake while sucrose was available. These findings indicate that the central amygdala contributes to refining motivated pursuit toward the preferred available option., Competing Interests: The authors declare no competing interests., (© 2024 The Authors.)
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- 2024
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7. State and rate-of-change encoding in parallel mesoaccumbal dopamine pathways.
- Author
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de Jong JW, Liang Y, Verharen JPH, Fraser KM, and Lammel S
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- Mice, Animals, Reward, Ventral Tegmental Area physiology, Dopamine metabolism, Dopaminergic Neurons physiology
- Abstract
The nervous system uses fast- and slow-adapting sensory detectors in parallel to enable neuronal representations of external states and their temporal dynamics. It is unknown whether this dichotomy also applies to internal representations that have no direct correlation in the physical world. Here we find that two distinct dopamine (DA) neuron subtypes encode either a state or its rate-of-change. In mice performing a reward-seeking task, we found that the animal's behavioral state and rate-of-change were encoded by the sustained activity of DA neurons in medial ventral tegmental area (VTA) DA neurons and transient activity in lateral VTA DA neurons, respectively. The neural activity patterns of VTA DA cell bodies matched DA release patterns within anatomically defined mesoaccumbal pathways. Based on these results, we propose a model in which the DA system uses two parallel lines for proportional-differential encoding of a state variable and its temporal dynamics., (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)
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- 2024
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8. Nucleus accumbens and dorsal medial striatal dopamine and neural activity are essential for action sequence performance.
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Fraser KM, Chen BJ, and Janak PH
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- Female, Rats, Animals, Male, Rats, Long-Evans, Flupenthixol pharmacology, Motivation, Cues, Dopamine Antagonists pharmacology, Reward, Conditioning, Operant, Nucleus Accumbens, Dopamine
- Abstract
Separable striatal circuits have unique functions in Pavlovian and instrumental behaviors but how these roles relate to performance of sequences of actions with and without associated cues are less clear. Here, we tested whether dopamine transmission and neural activity more generally in three striatal subdomains are necessary for performance of an action chain leading to reward delivery. Male and female Long-Evans rats were trained to press a series of three spatially distinct levers to receive reward. We assessed the contribution of neural activity or dopamine transmission within each striatal subdomain when progression through the action sequence was explicitly cued and in the absence of cues. Behavior in both task variations was substantially impacted following microinfusion of the dopamine antagonist, flupenthixol, into nucleus accumbens core (NAc) or dorsomedial striatum (DMS), with impairments in sequence timing and numbers of rewards earned after NAc flupenthixol. In contrast, after pharmacological inactivation to suppress overall activity, there was minimal impact on total rewards earned. Instead, inactivation of both NAc and DMS impaired sequence timing and led to sequence errors in the uncued, but not cued task. There was no impact of dopamine antagonism or reversible inactivation of dorsolateral striatum on either cued or uncued action sequence completion. These results highlight an essential contribution of NAc and DMS dopamine systems in motivational and performance aspects of chains of actions, whether cued or internally generated, as well as the impact of intact NAc and DMS function for correct sequence performance., (© 2023 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.)
- Published
- 2024
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9. Contexts facilitate dynamic value encoding in the mesolimbic dopamine system.
- Author
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Fraser KM, Collins VL, Wolff AR, Ottenheimer DJ, Bornhoft KN, Pat F, Chen BJ, Janak PH, and Saunders BT
- Abstract
Adaptive behavior in a dynamic environment often requires rapid revaluation of stimuli that deviates from well-learned associations. The divergence between stable value-encoding and appropriate behavioral output remains a critical test to theories of dopamine's function in learning, motivation, and motor control. Yet how dopamine neurons are involved in the revaluation of cues when the world changes to alter our behavior remains unclear. Here we make use of pharmacology, in vivo electrophysiology, fiber photometry, and optogenetics to resolve the contributions of the mesolimbic dopamine system to the dynamic reorganization of reward-seeking. Male and female rats were trained to discriminate when a conditioned stimulus would be followed by sucrose reward by exploiting the prior, non-overlapping presentation of a separate discrete cue - an occasion setter. Only when the occasion setter's presentation preceded the conditioned stimulus did the conditioned stimulus predict sucrose delivery. As a result, in this task we were able to dissociate the average value of the conditioned stimulus from its immediate expected value on a trial-to-trial basis. Both the activity of ventral tegmental area dopamine neurons and dopamine signaling in the nucleus accumbens were essential for rats to successfully update behavioral responding in response to the occasion setter. Moreover, dopamine release in the nucleus accumbens following the conditioned stimulus only occurred when the occasion setter indicated it would predict reward. Downstream of dopamine release, we found that single neurons in the nucleus accumbens dynamically tracked the value of the conditioned stimulus. Together these results reveal a novel mechanism within the mesolimbic dopamine system for the rapid revaluation of motivation.
- Published
- 2023
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10. Encoding and context-dependent control of reward consumption within the central nucleus of the amygdala.
- Author
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Fraser KM, Kim TH, Castro M, Drieu C, Padovan-Hernandez Y, Chen B, Pat F, Ottenheimer DJ, and Janak PH
- Abstract
The ability to evaluate and select a preferred option among a variety of available offers is an essential aspect of goal-directed behavior. Dysregulation of this valuation process is characteristic of alcohol use disorder, with the central amygdala being implicated in persistent alcohol pursuit. However, the mechanism by which the central amygdala encodes and promotes the motivation to seek and consume alcohol remains unclear. We recorded single-unit activity in male Long-Evans rats as they consumed 10% ethanol or 14.2% sucrose. We observed significant activity at the time of approach to alcohol or sucrose, as well as lick-entrained activity during the ongoing consumption of both alcohol and sucrose. We then evaluated the ability of central amygdala optogenetic manipulation time-locked to consumption to alter ongoing intake of alcohol or sucrose, a preferred non-drug reward. In closed two-choice scenarios where rats could drink only sucrose, alcohol, or quinine-adulterated alcohol with or without central amygdala stimulation, rats drank more of stimulation-paired options. Microstructural analysis of licking patterns suggests these effects were mediated by changes in motivation, not palatability. Given a choice among different options, central amygdala stimulation enhanced consumption if the stimulation was associated with the preferred reward while closed-loop inhibition only decreased consumption if the options were equally valued. However, optogenetic stimulation during consumption of the less-preferred option, alcohol, was unable to enhance overall alcohol intake while sucrose was available. Collectively, these findings indicate that the central amygdala processes the motivational value of available offers to promote pursuit of the most preferred available option.
- Published
- 2023
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11. From Prediction to Action: Dissociable Roles of Ventral Tegmental Area and Substantia Nigra Dopamine Neurons in Instrumental Reinforcement.
- Author
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Fraser KM, Pribut HJ, Janak PH, and Keiflin R
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- Rats, Male, Female, Animals, Reinforcement, Psychology, Substantia Nigra physiology, Reward, Dopaminergic Neurons physiology, Ventral Tegmental Area physiology
- Abstract
Reward seeking requires the coordination of motor programs to achieve goals. Midbrain dopamine neurons are critical for reinforcement, and their activation is sufficient for learning about cues, actions, and outcomes. Here we examine in detail the mechanisms underlying the ability of ventral tegmental area (VTA) and substantia nigra (SNc) dopamine neurons to support instrumental learning. By exploiting numerous behavioral tasks in combination with time-limited optogenetic manipulations in male and female rats, we reveal that VTA and SNc dopamine neurons generate reinforcement through separable psychological processes. VTA dopamine neurons imbue actions and their associated cues with motivational value that allows flexible and persistent pursuit, whereas SNc dopamine neurons support time-limited, precise, action-specific learning that is nonscalable and inflexible. This architecture is reminiscent of actor-critic reinforcement learning models with VTA and SNc instructing the critic and actor, respectively. Our findings indicate that heterogeneous dopamine systems support unique forms of instrumental learning that ultimately result in disparate reward-seeking strategies. SIGNIFICANCE STATEMENT Dopamine neurons in the midbrain are essential for learning, motivation, and movement. Here we describe in detail the ability of VTA and SNc dopamine neurons to generate instrumental reinforcement, a process where an agent learns about actions they can emit to earn reward. While rats will avidly work and learn to respond for activation of VTA and SNc dopamine neurons, we find that only VTA dopamine neurons imbue actions and their associated cues with motivational value that spur continued pursuit of reward. Our data support a hypothesis that VTA and SNc dopamine neurons engage distinct psychological processes that have consequences for our understanding of these neurons in health and disease., (Copyright © 2023 the authors.)
- Published
- 2023
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12. Basolateral amygdala and orbitofrontal cortex, but not dorsal hippocampus, are necessary for the control of reward-seeking by occasion setters.
- Author
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Fraser KM and Janak PH
- Subjects
- Rats, Male, Animals, Reward, Prefrontal Cortex physiology, Conditioning, Operant, Cues, Hippocampus physiology, Basolateral Nuclear Complex physiology
- Abstract
Reward-seeking in the world is driven by cues that can have ambiguous predictive and motivational value. To produce adaptive, flexible reward-seeking, it is necessary to exploit occasion setters, other distinct features in the environment, to resolve the ambiguity of Pavlovian reward-paired cues. Despite this, very little research has investigated the neurobiological underpinnings of occasion setting, and as a result little is known about which brain regions are critical for occasion setting. To address this, we exploited a recently developed task that was amenable to neurobiological inquiry where a conditioned stimulus is only predictive of reward delivery if preceded in time by the non-overlapping presentation of a separate cue-an occasion setter. This task required male rats to maintain and link cue-triggered expectations across time to produce adaptive reward-seeking. We interrogated the contributions of the basolateral amygdala and orbitofrontal cortex to occasion setting as these regions are thought to be critical for the computation and exploitation of state value, respectively. Reversible inactivation of either structure prior to the occasion-setting task resulted in a profound inability of rats to use the occasion setter to guide reward-seeking. In contrast, inactivation of the dorsal hippocampus, a region fundamental for context-specific responding was without effect nor did inactivation of the basolateral amygdala or orbitofrontal cortex in a standard Pavlovian conditioning preparation affect conditioned responding. We conclude that neural activity within the orbitofrontal cortex and basolateral amygdala circuit is necessary to update and resolve ambiguity in the environment to promote cue-driven reward-seeking., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2023
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13. Mesoaccumbal Dopamine Heterogeneity: What Do Dopamine Firing and Release Have to Do with It?
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de Jong JW, Fraser KM, and Lammel S
- Subjects
- Dopaminergic Neurons, Motivation, Nucleus Accumbens physiology, Reward, Dopamine, Ventral Tegmental Area physiology
- Abstract
Ventral tegmental area (VTA) dopamine (DA) neurons are often thought to uniformly encode reward prediction errors. Conversely, DA release in the nucleus accumbens (NAc), the prominent projection target of these neurons, has been implicated in reinforcement learning, motivation, aversion, and incentive salience. This contrast between heterogeneous functions of DA release versus a homogeneous role for DA neuron activity raises numerous questions regarding how VTA DA activity translates into NAc DA release. Further complicating this issue is increasing evidence that distinct VTA DA projections into defined NAc subregions mediate diverse behavioral functions. Here, we evaluate evidence for heterogeneity within the mesoaccumbal DA system and argue that frameworks of DA function must incorporate the precise topographic organization of VTA DA neurons to clarify their contribution to health and disease.
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- 2022
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14. Reef communities show predictable undulations in linear abundance size spectra from copepods to sharks.
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Heather FJ, Stuart-Smith RD, Blanchard JL, Fraser KM, and Edgar GJ
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- Animals, Body Size, Coral Reefs, Ecology, Copepoda, Sharks
- Abstract
Among the more widely accepted general hypotheses in ecology is that community relationships between abundance and body size follow a log-linear size spectrum, from the smallest consumers to the largest predators (i.e. 'bacteria to whales'). Nevertheless, most studies only investigate small subsets of this spectrum, and note that extreme size classes in survey data deviate from linear expectations. In this study, we fit size spectra to field data from 45 rocky and coral reef sites along a 28° latitudinal gradient, comprising individuals from 0.125 mm to 2 m in body size. We found that 96% of the variation in abundance along this 'extended' size gradient was described by a single linear function across all sites. However, consistent 'wobbles' were also observed, with subtle peaks and troughs in abundance along the spectrum, which varied with sea temperature, as predicted by theory relating to trophic cascades., (© 2021 John Wiley & Sons Ltd.)
- Published
- 2021
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15. Production of mobile invertebrate communities on shallow reefs from temperate to tropical seas.
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Fraser KM, Lefcheck JS, Ling SD, Mellin C, Stuart-Smith RD, and Edgar GJ
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- Animals, Australia, Biomass, Ecosystem, Fishes, Food Chain, Humans, Kelp, Oceans and Seas, Predatory Behavior, Temperature, Coral Reefs, Invertebrates physiology
- Abstract
Primary productivity of marine ecosystems is largely driven by broad gradients in environmental and ecological properties. By contrast, secondary productivity tends to be more variable, influenced by bottom-up (resource-driven) and top-down (predatory) processes, other environmental drivers, and mediation by the physical structure of habitats. Here, we use a continental-scale dataset on small mobile invertebrates (epifauna), common on surfaces in all marine ecosystems, to test influences of potential drivers of temperature-standardized secondary production across a large biogeographic range. We found epifaunal production to be remarkably consistent along a temperate to tropical Australian latitudinal gradient of 28.6°, spanning kelp forests to coral reefs (approx. 3500 km). Using a model selection procedure, epifaunal production was primarily related to biogenic habitat group, which explained up to 45% of total variability. Production was otherwise invariant to predictors capturing primary productivity, the local biomass of fishes (proxy for predation pressure), and environmental, geographical, and human impacts. Highly predictable levels of epifaunal productivity associated with distinct habitat groups across continental scales should allow accurate modelling of the contributions of these ubiquitous invertebrates to coastal food webs, thus improving understanding of likely changes to food web structure with ocean warming and other anthropogenic impacts on marine ecosystems.
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- 2020
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16. Reward activity in ventral pallidum tracks satiety-sensitive preference and drives choice behavior.
- Author
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Ottenheimer DJ, Wang K, Tong X, Fraser KM, Richard JM, and Janak PH
- Abstract
A key function of the nervous system is producing adaptive behavior across changing conditions, like physiological state. Although states like thirst and hunger are known to impact decision-making, the neurobiology of this phenomenon has been studied minimally. Here, we tracked evolving preference for sucrose and water as rats proceeded from a thirsty to sated state. As rats shifted from water choices to sucrose choices across the session, the activity of a majority of neurons in the ventral pallidum, a region crucial for reward-related behaviors, closely matched the evolving behavioral preference. The timing of this signal followed the pattern of a reward prediction error, occurring at the cue or the reward depending on when reward identity was revealed. Additionally, optogenetic stimulation of ventral pallidum neurons at the time of reward was able to reverse behavioral preference. Our results suggest that ventral pallidum neurons guide reward-related decisions across changing physiological states., (Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY).)
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- 2020
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17. A quantitative reward prediction error signal in the ventral pallidum.
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Ottenheimer DJ, Bari BA, Sutlief E, Fraser KM, Kim TH, Richard JM, Cohen JY, and Janak PH
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- Animals, Cues, Food Preferences physiology, Male, Models, Neurological, Nucleus Accumbens physiology, Optogenetics, Rats, Long-Evans, Basal Forebrain physiology, Motivation physiology, Neurons physiology, Reward
- Abstract
The nervous system is hypothesized to compute reward prediction errors (RPEs) to promote adaptive behavior. Correlates of RPEs have been observed in the midbrain dopamine system, but the extent to which RPE signals exist in other reward-processing regions is less well understood. In the present study, we quantified outcome history-based RPE signals in the ventral pallidum (VP), a basal ganglia region functionally linked to reward-seeking behavior. We trained rats to respond to reward-predicting cues, and we fit computational models to predict the firing rates of individual neurons at the time of reward delivery. We found that a subset of VP neurons encoded RPEs and did so more robustly than the nucleus accumbens, an input to the VP. VP RPEs predicted changes in task engagement, and optogenetic manipulation of the VP during reward delivery bidirectionally altered rats' subsequent reward-seeking behavior. Our data suggest a pivotal role for the VP in computing teaching signals that influence adaptive reward seeking.
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- 2020
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18. Relationships between invertebrate benthos, environmental drivers and pollutants at a subcontinental scale.
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Denis-Roy L, Ling SD, Fraser KM, and Edgar GJ
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- Animals, Australia, Ecosystem, Environmental Monitoring, Geologic Sediments, Invertebrates, Environmental Pollutants, Metals, Heavy analysis, Water Pollutants, Chemical analysis
- Abstract
Marine ecosystems are structured by an array of natural and anthropogenic drivers, their diverse influences varying between different community types and across space. We assessed consistency in variation in composition and richness for three communities (macro- and meio-faunal communities associated with macroalgae, and soft-sediment infaunal communities) across natural and pollution gradients at the subcontinental scale of southeastern Australia. Community structure varied with natural environmental factors (temperature, wave exposure) and, to a lesser extent, pollutant loads (catchment effects, heavy metals, hydrocarbons and nutrients) across 43 sites spanning 2700 km. The community types showed differing sensitivities to pollutants: algal macrofauna was most strongly associated with hydrocarbon pollution and nutrient loading; algal meiofauna with heavy metals and nutrients; and infauna with catchment effects and nutrients. Different taxonomic resolutions were needed to detect significant pollution relationships for the three community types, indicating that monitoring programmes are most effective if pollutant- and fauna-specific., Competing Interests: Declaration of competing interest We wish to confirm that there are no known conflicts of interest associated with this publication and there has been no significant financial support for this work that could have influenced its outcome., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
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19. Epidermal Carcinoma of the Conchal Bowl: Creation of a Multidisciplinary Pathway Approach.
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Fraser KM, Matthews TW, and Kurwa HA
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- Aged, Aged, 80 and over, Carcinoma, Basal Cell therapy, Carcinoma, Squamous Cell therapy, Combined Modality Therapy, Consensus, Dermatology, Ear Neoplasms therapy, Female, Humans, Male, Middle Aged, Mohs Surgery, Neoplasm Invasiveness, Otolaryngology, Patient Care Team, Plastic Surgery Procedures methods, Skin Neoplasms therapy, Skin Transplantation, Surgical Flaps, Carcinoma, Basal Cell surgery, Carcinoma, Squamous Cell surgery, Ear Auricle surgery, Ear Canal surgery, Ear Neoplasms surgery, Skin Neoplasms surgery
- Abstract
Background: Malignant neoplasms of the auricle make up 6% of all skin cancers. Management of cutaneous neoplasms of the conchal bowl presents a unique challenge in visualizing and defining margins that may extend into the external auditory canal (EAC)., Objectives: The objective of this study was to create a multidisciplinary pathway for cutaneous carcinoma of the conchal bowl extending into the EAC., Methods: We present a series of patients that were referred to dermatology or otolaryngology, with cutaneous neoplasms arising in the conchal bowl. A consensus approach from otolaryngology and dermatology, for evaluation and treatment, was created based on evaluation of these cases, and review of the otolaryngology and dermatology literature, in collaboration between the two specialties., Results: Initial evaluation should be done by both dermatology and otolaryngology, with otomicroscopic evaluation of the canal. Imaging is recommended for lesions that approach the EAC, for bony and soft tissue spread. Excision of the tumor with Mohs micrographic surgery to achieve clearance in the conchal bowl should be performed initially. If extension into the external auditory meatus is present, otolaryngology would proceed with en bloc resection. Repair is dictated by the defect, with both specialties involved in follow-up., Conclusions: In collaboration between dermatology and otolaryngology, and following review of the literature, a pathway was created to manage skin cancer of the conchal bowl. This resulted in a stepwise approach for evaluation and management, ensuring that patients have a streamlined pathway for the treatment of these lesions.
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- 2020
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20. Plasma chemistry in nesting leatherback sea turtles (Dermochelys coriacea) from Florida: Understanding the importance of sample hemolysis effects on blood analytes.
- Author
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Stacy NI, Chabot RM, Innis CJ, Cray C, Fraser KM, Rigano KS, and Perrault JR
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- Animals, Blood Circulation, Female, Florida, Hemolysis, Reference Values, Turtles blood
- Abstract
Plasma chemistry is widely used in diagnostic and research settings in sea turtles. However, plasma discolorations such as hemolysis are often not considered in data interpretation. The objectives of this study were to (1) evaluate the effects of moderate hemolysis on plasma electrolytes, minerals, and proteins using dry chemistry analysis (DCA) and protein electrophoresis from nesting leatherback sea turtles (Dermochelys coriacea) from Florida and to (2) establish blood analyte reference intervals. Twenty-six plasma samples with absence of hemolysis were selected and sub-divided into one non-hemolytic aliquot and an aliquot that was experimentally manipulated to mimic moderate hemolysis. Plasma samples were analyzed for hemoglobin using a handheld photometer; sodium, potassium, chloride, magnesium, calcium, phosphorus, and total protein using DCA; and protein electrophoresis. Packed cell volume and hemoglobin were measured in corresponding whole blood samples. Reference intervals were established. All analytes except calcium and pre-albumin were significantly higher and the calcium:phosphorus and albumin:globulin ratios were significantly lower in hemolytic plasma compared to non-hemolytic plasma. Alpha2-globulins and potassium were the analytes most impacted by hemolysis, averaging 3.3- and 2.0-fold higher in hemolyzed samples, respectively, indicating that (1) hemoglobin migrates into the alpha2-globulin region in this species and (2) notable intracellular potassium is released into plasma with hemolysis. Attempted conversion factors for compensation of hemolysis were considered inaccurate for 4 of 16 analytes due to non-significant regression lines. We also report that PCV provides an estimate of hemoglobin (g/L) using the formula: (2.59 × PCV) + 24.59. Given the spurious effects of hemolysis, the degree of this artifact should be reported with biochemistry data, and samples with moderate to severe hemolysis should be excluded from datasets when interpreting electrolyte, mineral, and protein results. This will ensure accurate data interpretation for individual turtles in rehabilitation or research settings and population-level data relevant to conservation-focused projects., Competing Interests: Kimberly S. Rigano is currently an employee of Ecological Associates, Inc; however, she was not employed at this agency during the time of this study. This and the affiliation of RMC with Inwater Research Group, Inc., does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials. There are no other relevant declarations relating to employment, consultancy, patents, products in development or marketed products.
- Published
- 2019
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21. Occasion setters attain incentive motivational value: implications for contextual influences on reward-seeking.
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Fraser KM and Janak PH
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- Animals, Male, Rats, Behavior, Animal physiology, Conditioning, Classical physiology, Cues, Motivation physiology, Reinforcement, Psychology, Reward
- Abstract
The context in which reward-paired cues are encountered can resolve ambiguity and set the occasion for appropriate reward-seeking. The psychological processes by which contexts regulate reward-seeking remain unclear as contexts are diffuse and difficult to isolate from other stimuli. To overcome this, we modeled a context as a phasic and discrete event-an occasion setter (OS)-which allowed for control over its presentation and influence on cue-driven reward-seeking. This allowed us to directly assess how OSs regulate the predictive and motivational significance of Pavlovian cues. Male rats ( n = 50) were trained in a Pavlovian procedure where the presentation of an ambiguous conditioned stimulus (CS) was reinforced only if preceded by an occasion setting cue. We assessed the motivational value of the OS and CS alone or in combination using tests of conditioned reinforcement. Rats enhanced conditioned approach to the reward port during the CS when it was preceded by the OS. When allowed the opportunity, rats responded more to obtain presentations of the CS in combination with the OS than the CS alone. Critically, rats also worked to obtain presentations of the OS alone more than the CS alone, and this was resistant to manipulations of the value of the OS. We conclude that occasion setting can act via incentive motivational mechanisms and that, apart from resolving predictive information about ambiguous reward-paired cues, OSs themselves generate states of appetitive motivation that can facilitate reward-seeking., (© 2019 Fraser and Janak; Published by Cold Spring Harbor Laboratory Press.)
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- 2019
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22. How Does Drug Use Shift the Balance Between Model-Based and Model-Free Control of Decision Making?
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Fraser KM and Janak PH
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- Decision Making, Humans, Behavior, Addictive, Substance-Related Disorders
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- 2019
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23. Occasion setting.
- Author
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Fraser KM and Holland PC
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- Animals, Basolateral Nuclear Complex physiology, Cues, Extinction, Psychological physiology, Humans, Models, Neurological, Models, Psychological, Motivation, Neural Pathways physiology, Nucleus Accumbens physiology, Prefrontal Cortex physiology, Transfer, Psychology physiology, Association Learning physiology, Brain physiology, Conditioning, Psychological physiology, Discrimination Learning physiology
- Abstract
Occasion setting refers to the ability of 1 stimulus, an occasion setter, to modulate the efficacy of the association between another, conditioned stimulus (CS) and an unconditioned stimulus (US) or reinforcer. Occasion setters and simple CSs are readily distinguished. For example, occasion setters are relatively immune to extinction and counterconditioning, and their combination and transfer functions differ substantially from those of simple CSs. Similarly, the acquisition of occasion setting is favored when stimuli are separated by longer intervals, by empty trace intervals, and are of different modalities, whereas the opposite conditions typically favor the acquisition of simple associations. Furthermore, the simple conditioning and occasion setting properties of a single stimulus can be independent, for example, that stimulus may simultaneously predict the occurrence of a reinforcer and indicate that another stimulus will not be reinforced. Many behavioral phenomena that are intractable to simple associative analysis are better understood within an occasion setting framework. Besides capturing the distinction between direct and modulatory control common to many arenas in neuroscience, occasion setting provides a model for the hierarchical organization of memory for events and event relations, and for contextual control more broadly. Although early lesion studies further differentiated between occasion setting and simple conditioning functions, little is known about the neurobiology of occasion setting. Modern techniques for precise manipulation and monitoring of neuronal activity in multiple brain regions are ideally suited for disentangling contributions of simple conditioning and occasion setting in associative learning. (PsycINFO Database Record (c) 2019 APA, all rights reserved).
- Published
- 2019
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24. Stressing the other paraventricular nucleus.
- Author
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Fraser KM and Janak PH
- Subjects
- Dopamine, Thalamus, Locus Coeruleus, Paraventricular Hypothalamic Nucleus
- Published
- 2018
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25. Long-lasting contribution of dopamine in the nucleus accumbens core, but not dorsal lateral striatum, to sign-tracking.
- Author
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Fraser KM and Janak PH
- Subjects
- Animals, Conditioning, Classical drug effects, Corpus Striatum drug effects, Dopamine Antagonists pharmacology, Male, Nucleus Accumbens drug effects, Rats, Rats, Sprague-Dawley, Time Factors, Conditioning, Classical physiology, Corpus Striatum metabolism, Cues, Dopamine metabolism, Nucleus Accumbens metabolism, Reward
- Abstract
The attribution of incentive salience to reward-paired cues is dependent on dopamine release in the nucleus accumbens core (NAcC). These dopamine signals conform to traditional reward-prediction error signals and have been shown to diminish with time. Here we examined whether the diminishing dopamine signal in the NAcC has functional implications for the expression of sign-tracking, a Pavlovian conditioned response indicative of the attribution of incentive salience to reward-paired cues. Food-restricted male Sprague Dawley rats were trained in a Pavlovian paradigm in which an insertable lever predicted delivery of food reward in a nearby food cup. After 7 or 14 training sessions, rats received infusions of saline, the dopamine antagonist flupenthixol, or the GABA agonists baclofen and muscimol into the NAcC or the dorsal lateral striatum (DLS). Dopamine antagonism within the NAcC attenuated sign-tracking, whereas reversible inactivation did not affect sign-tracking but increased non-specific food cup checking behaviors. Neither drug in the DLS affected sign-tracking behavior. Critically, extended training did not alter these effects. Although extended experience with an incentive stimulus may reduce cue-evoked dopamine in the NAcC, this does not remove the dependence on dopamine in this region to promote Pavlovian cue approach nor result in the recruitment of dorsal lateral striatal systems for this behavior. These data support the notion that dopamine within the mesoaccumbal system, but not the nigrostriatal system, contributes critically to incentive motivational processes independent of the length of training., (© 2017 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.)
- Published
- 2017
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26. A food-predictive cue attributed with incentive salience engages subcortical afferents and efferents of the paraventricular nucleus of the thalamus.
- Author
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Haight JL, Fuller ZL, Fraser KM, and Flagel SB
- Subjects
- Amygdala cytology, Amygdala physiology, Animals, Cerebral Cortex cytology, Cerebral Cortex physiology, Corpus Striatum cytology, Corpus Striatum physiology, Cues, Food, Goals, Male, Midline Thalamic Nuclei cytology, Motivation physiology, Neural Pathways cytology, Neural Pathways physiology, Neurons cytology, Nucleus Accumbens cytology, Nucleus Accumbens physiology, Proto-Oncogene Proteins c-fos metabolism, Rats, Sprague-Dawley, Anticipation, Psychological physiology, Feeding Behavior physiology, Midline Thalamic Nuclei physiology, Neurons physiology, Reward
- Abstract
The paraventricular nucleus of the thalamus (PVT) has been implicated in behavioral responses to reward-associated cues. However, the precise role of the PVT in these behaviors has been difficult to ascertain since Pavlovian-conditioned cues can act as both predictive and incentive stimuli. The "sign-tracker/goal-tracker" rat model has allowed us to further elucidate the role of the PVT in cue-motivated behaviors, identifying this structure as a critical component of the neural circuitry underlying individual variation in the propensity to attribute incentive salience to reward cues. The current study assessed differences in the engagement of specific PVT afferents and efferents in response to presentation of a food-cue that had been attributed with only predictive value or with both predictive and incentive value. The retrograde tracer fluorogold (FG) was injected into the PVT or the nucleus accumbens (NAc) of rats, and cue-induced c-Fos in FG-labeled cells was quantified. Presentation of a predictive stimulus that had been attributed with incentive value elicited c-Fos in PVT afferents from the lateral hypothalamus, medial amygdala (MeA), and the prelimbic cortex (PrL), as well as posterior PVT efferents to the NAc. PVT afferents from the PrL also showed elevated c-Fos levels following presentation of a predictive stimulus alone. Thus, presentation of an incentive stimulus results in engagement of subcortical brain regions; supporting a role for the hypothalamic-thalamic-striatal axis, as well as the MeA, in mediating responses to incentive stimuli; whereas activity in the PrL to PVT pathway appears to play a role in processing the predictive qualities of reward-paired stimuli., (Copyright © 2016 IBRO. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2017
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27. Examining the role of dopamine D2 and D3 receptors in Pavlovian conditioned approach behaviors.
- Author
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Fraser KM, Haight JL, Gardner EL, and Flagel SB
- Subjects
- Analysis of Variance, Animals, Conditioning, Classical drug effects, Cues, Dopamine Agents pharmacology, Goals, Male, Motivation drug effects, Rats, Rats, Sprague-Dawley, Reaction Time drug effects, Reinforcement, Psychology, Conditioning, Classical physiology, Receptors, Dopamine D2 metabolism, Receptors, Dopamine D3 metabolism
- Abstract
Elucidating the neurobiological mechanisms underlying individual differences in the extent to which reward cues acquire the ability to act as incentive stimuli may contribute to the development of successful treatments for addiction and related disorders. We used the sign-tracker/goal-tracker animal model to examine the role of dopamine D2 and D3 receptors in the propensity to attribute incentive salience to reward cues. Following Pavlovian training, wherein a discrete lever-cue was paired with food reward, rats were classified as sign- or goal-trackers based on the resultant conditioned response. We examined the effects of D2/D3 agonists, 7-OH-DPAT (0.01-0.32mg/kg) or pramipexole (0.032-0.32mg/kg), the D2/D3 antagonist raclopride (0.1mg/kg), and the selective D3 antagonist, SB-277011A (6 or 24mg/kg), on the expression of sign- and goal-tracking conditioned responses. The lever-cue acquired predictive value and elicited a conditioned response for sign- and goal-trackers, but only for sign-trackers did it also acquire incentive value. Following administration of either 7-OH-DPAT, pramipexole, or raclopride, the performance of the previously acquired conditioned response was attenuated for both sign- and goal-trackers. For sign-trackers, the D2/D3 agonist, 7-OH-DPAT, also attenuated the conditioned reinforcing properties of the lever-cue. The selective D3 antagonist did not affect either conditioned response. Alterations in D2/D3 receptor signaling, but not D3 signaling alone, transiently attenuate a previously acquired Pavlovian conditioned response, regardless of whether the response is a result of incentive motivational processes. These findings suggest activity at the dopamine D2 receptor is critical for a reward cue to maintain either its incentive or predictive qualities., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
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28. Diminished Dopamine: Timing, Neuroanatomy, or Drug History?
- Author
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Fraser KM and Haight JL
- Subjects
- Animals, Dopamine metabolism, Humans, Substance-Related Disorders pathology, Time Factors, Brain anatomy & histology, Brain metabolism, Dopamine deficiency, Substance-Related Disorders metabolism
- Published
- 2016
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29. Lesions of the paraventricular nucleus of the thalamus differentially affect sign- and goal-tracking conditioned responses.
- Author
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Haight JL, Fraser KM, Akil H, and Flagel SB
- Subjects
- Animals, Disease Models, Animal, Male, Paraventricular Hypothalamic Nucleus pathology, Rats, Rats, Sprague-Dawley, Behavior, Animal physiology, Conditioning, Classical physiology, Cues, Motivation physiology, Paraventricular Hypothalamic Nucleus physiopathology, Reward
- Abstract
Recently, evidence has emerged suggesting a role for the paraventricular nucleus of the thalamus (PVT) in the processing of reward-associated cues. However, the specific role of the PVT in these processes has yet to be elucidated. Here we use an animal model that captures individual variation in response to discrete reward-associated cues to further assess the role of the PVT in stimulus-reward learning. When rats are exposed to a Pavlovian conditioning paradigm, wherein a discrete cue predicts food reward, two distinct conditioned responses emerge. Some rats, termed sign-trackers, approach and manipulate the cue, whereas others, termed goal-trackers, approach the location of reward delivery upon cue presentation. For both sign- and goal-trackers the cue is a predictor, but only for sign-trackers is it also an incentive stimulus. We investigated the role of the PVT in the acquisition and expression of these conditioned responses using an excitotoxic lesion. Results indicate that PVT lesions prior to acquisition amplify the differences between phenotypes - increasing sign-tracking and attenuating goal-tracking behavior. Lesions of the PVT after rats had acquired their respective conditioned responses also attenuated the expression of the goal-tracking response, and increased the sign-tracking response, but did so selectively in goal-trackers. These results suggest that the PVT acts to suppress the attribution of incentive salience to reward cues, as disruption of the functional activity within this structure enhances the tendency to sign-track., (© 2015 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.)
- Published
- 2015
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30. Expression and functional characterization of a white clover isoflavone synthase in tobacco.
- Author
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Franzmayr BK, Rasmussen S, Fraser KM, and Jameson PE
- Subjects
- Biosynthetic Pathways, Crosses, Genetic, Gene Expression, Genetic Engineering, Genistein metabolism, Isoflavones isolation & purification, Solanum lycopersicum genetics, Nitrogen metabolism, Oxygenases metabolism, Phenotype, Plant Leaves chemistry, Plant Leaves genetics, Plant Leaves metabolism, Plant Proteins genetics, Plant Proteins metabolism, Plants, Genetically Modified, Seedlings chemistry, Seedlings genetics, Seedlings metabolism, Nicotiana chemistry, Nicotiana genetics, Nicotiana metabolism, Transcription Factors metabolism, Transgenes, Trifolium chemistry, Trifolium genetics, Isoflavones metabolism, Oxygenases genetics, Transcription Factors genetics, Trifolium enzymology
- Abstract
Background and Aims: Trifolium repens (white clover) is a valuable component of pastures due to its ability to fix nitrogen. Productivity of T. repens is sometimes threatened by insect pests, and it has been suggested that phenylpropanoid-derived isoflavonoids such as formononetin can protect white clover from insect damage. The aim of this study was to isolate and functionally characterize an isoflavone synthase (IFS2_12) from T. repens by expressing it in Nicotiana tabacum (tobacco), a plant which does not naturally produce isoflavonoids., Methods: To induce anthocyanin production and increase isoflavonoid precursors in tobacco, the tomato R2R3 MYB transcription factor ANT1 was expressed in tobacco (Nt-ANT1 plants). IFS2_12 was heterologously expressed in tobacco both transiently and stably, and isoflavonoids in leaf extracts were analysed by liquid chromatography (LC) coupled to mass spectrometry (MS(n)). As a positive control, a double construct of soybean IFS and alfalfa chalcone isomerase (IFS/CHI), which had been previously shown to induce isoflavonoid production in tobacco, was also expressed. Stable transformants expressing IFS2_12, soybean/alfalfa IFS/CHI and ANT1 were crossed and the resulting plants were analysed for isoflavonoid production., Key Results: Leaves of tobacco plants expressing ANT1 had a range of phenotypes from mainly green to uniformly bronze coloured. Both transient and stable expression of the IFS2_12 or IFS/CHI constructs resulted in the production of the isoflavonoid genistein and its conjugates. The highest levels (up to 19·2 mg g(-1) d. wt) accumulated in a progeny of a cross between a purple ANT1 and a IFS/ CHI transformant, while the second highest concentration was found in a plant derived from a selfed IFS2-12 transformant., Conclusions: It is concluded that the gene IFS2_12 isolated from T. repens encodes an isoflavone synthase. This study paves the way for engineering white clover plants with higher levels of isoflavonoids than naturally found in this species for sufficient insect protection.
- Published
- 2012
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31. Dysregulated macrophage-inflammatory protein-2 expression drives illness in bacterial superinfection of influenza.
- Author
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Zavitz CC, Bauer CM, Gaschler GJ, Fraser KM, Strieter RM, Hogaboam CM, and Stampfli MR
- Subjects
- Animals, Bordetella Infections pathology, Bordetella Infections therapy, Cell Line, Chemokine CXCL2 antagonists & inhibitors, Chemokine CXCL2 physiology, Dogs, Female, Gene Expression Regulation, Bacterial immunology, Gene Expression Regulation, Viral immunology, Inflammation Mediators antagonists & inhibitors, Inflammation Mediators metabolism, Inflammation Mediators physiology, Mice, Mice, Inbred C57BL, Orthomyxoviridae Infections pathology, Orthomyxoviridae Infections therapy, Pneumonia, Bacterial immunology, Pneumonia, Bacterial pathology, Pneumonia, Bacterial virology, Pneumonia, Viral immunology, Pneumonia, Viral microbiology, Pneumonia, Viral pathology, Receptors, Interleukin-8B antagonists & inhibitors, Superinfection microbiology, Superinfection virology, Bordetella Infections immunology, Bordetella parapertussis immunology, Chemokine CXCL2 biosynthesis, Influenza A Virus, H1N1 Subtype immunology, Orthomyxoviridae Infections immunology, Superinfection immunology
- Abstract
Influenza virus infection is a leading cause of death and disability throughout the world. Influenza-infected hosts are vulnerable to secondary bacterial infection, however, and an ensuing bacterial pneumonia is actually the predominant cause of influenza-attributed deaths during pandemics. A number of mechanisms have been proposed by which influenza may predispose to superinfection with an unrelated or heterologous pathogen, but the subsequent interaction between the host, virus, and bacteria remains an understudied area. In this study, we develop and examine a novel model of heterologous pulmonary infection in which an otherwise subclinical Bordetella parapertussis infection synergizes with an influenza virus infection to yield a life-threatening secondary pneumonia. Despite a profound pulmonary inflammatory response and unaltered viral clearance, bacterial clearance was significantly impaired in heterologously infected mice. No deficits were observed in pulmonary or systemic adaptive immune responses or the viability or function of infiltrating inflammatory cells to explain this phenomenon, and we provide evidence that the onset of severe pulmonary inflammation actually precedes the increased bacterial burden, suggesting that exacerbated inflammation is independent of bacterial burden. To that end, neutralization of the ELR(+) inflammatory chemokine MIP-2 (CXCL2/GRO-beta) attenuated the inflammation, weight loss, and clinical presentation of heterologously infected mice without impacting bacterial burden. These data suggest that pulmonary inflammation, rather than pathogen burden, is the key threat during bacterial superinfection of influenza and that selective chemokine antagonists may be a novel therapeutic intervention in cases of bacterial superinfection of influenza.
- Published
- 2010
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32. Two-point Dixon fat-water separation: improving reliability and accuracy in phase correction algorithms.
- Author
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Schmidt MA and Fraser KM
- Subjects
- Adipose Tissue, Body Water, Humans, Reproducibility of Results, Algorithms, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Parotid Gland pathology
- Abstract
Purpose: To propose an advanced phase-correction region-growing algorithm for two-point fat-water separation suitable for parotid assessment, and to evaluate the general performance of phase-correction algorithms., Materials and Methods: Two region-growing algorithms were evaluated in test objects and in head images: the original phase-correction algorithm (OPC) and the advanced phase-correction algorithm with voxel size manipulation (VSM) which includes: 1) starting the region-growing process from images of lower resolution and subsequently stepping toward the original matrix size, and 2) limiting the use of low-pass filters to fat-water interfaces with partial volume effects, Results: Fundamental problems relate to biological tissue spectrum being poorly approximated by two discrete peaks for fat and water. The VSM algorithm was shown to be less noise-sensitive, faster, and to produce a better approximation for the field inhomogeneity map. In head images (6 volunteers, 10 slices each) 43 errors were found with the OPC algorithm and only 6 errors with the VSM algorithm. Only the OPC algorithm produced errors surrounding the parotids (10 errors)., Conclusion: The VSM algorithm provides a more accurate and less noise-sensitive fat-water separation. This highly significant performance improvement allows the application of phase-correction algorithms to a wider range of clinical applications.
- Published
- 2008
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33. Comparative analysis of genome sequences of three isolates of Orf virus reveals unexpected sequence variation.
- Author
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Mercer AA, Ueda N, Friederichs SM, Hofmann K, Fraser KM, Bateman T, and Fleming SB
- Subjects
- Base Composition, Base Sequence, DNA, Viral, Gene Order, Molecular Sequence Data, Orf virus isolation & purification, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Synteny, Genetic Variation, Genome, Viral, Orf virus genetics
- Abstract
Orf virus (ORFV) is the type species of the Parapoxvirus genus. Here, we present the genomic sequence of the most well studied ORFV isolate, strain NZ2. The NZ2 genome is 138 kbp and contains 132 putative genes, 88 of which are present in all analyzed chordopoxviruses. Comparison of the NZ2 genome with the genomes of 2 other fully sequenced isolates of ORFV revealed that all 3 genomes carry each of the 132 genes, but there are substantial sequence variations between isolates in a significant number of genes, including 9 with inter-isolate amino acid sequence identity of only 38-79%. Each genome has an average of 64% G+C but each has a distinctive pattern of substantial deviation from the average within particular regions of the genome. The same pattern of variation was also seen in the genome of another parapoxvirus species and was clearly unlike the uniform patterns of G+C content seen in all other genera of chordopoxviruses. The availability of genomic sequences of three orf virus isolates allowed us to more accurately assess likely coding regions and thereby revise published data for 24 genes and to predict two previously unrecognized genes.
- Published
- 2006
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34. Too young for attention deficit disorder? Views from preschool.
- Author
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Fraser KM
- Subjects
- Age Factors, Child, Preschool, Female, Humans, Male, Attention Deficit Disorder with Hyperactivity diagnosis
- Abstract
A review of public-school administrative records and interviews with early-childhood directors from special and regular programs were used to collect information about factors associated with outcomes for young children with attention-deficit disorder with or without hyperactivity (AD/HD) in preschool. Special-education preschool administrators and community-based child care and preschool directors differed in their fundamental view of "what works" with preschool AD/HD children, but they agreed in principle on other issues (e.g., public-school providers attested to faith in adult-directed programming; community providers cited child-centered approaches as effective with AD/HD). The records review and interviews indicate that intrinsic program structure, gentle and constant adult help, acceptance of the child, family integrity, gross motor facilities, and attention to comorbidities were seen as positively related to child success. Multiple caregivers, poor understanding of development, failure to foster self-soothing and other personal mastery skills, expectations of perfection, and delegated parenting were identified as negatively related to good outcomes over time for children with AD/HD or similar profiles.
- Published
- 2002
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35. Gene homology between orf virus and smallpox variola virus.
- Author
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Mercer AA, Fraser KM, and Esposito JJ
- Subjects
- Amino Acid Sequence, Base Sequence, DNA, Viral, Molecular Sequence Data, Orthopoxvirus genetics, Sequence Homology, Amino Acid, Vaccinia virus genetics, Genes, Viral, Orf virus genetics, Variola virus genetics
- Abstract
About 47% identity was observed between the deduced amino acid sequences of a protein encoded by a gene of the parapoxvirus orf virus (OV) strain NZ2 and a 6 kDa protein of unknown function reported to be produced by an open reading frame expressed early after infection by the orthopoxvirus Western Reserve vaccinia virus (VAC); the open reading frame is absent from VAC strain Copenhagen. Examination of sequences reported for variola virus (VAR) strains Bangladesh, India, Congo- 1970, Somalia- 1977 and Garcia- 1966 revealed each encoded a correlate 58 amino acid protein. The open reading frame was not reported in the original analyses of these sequences because a lower limit of 60 amino acids was used to identify potential encoded proteins. Inspection of partial reading frames reported for cowpox virus (CWV) and ectromelia virus (EMV) suggested that these viruses might also code for a correlate of the VAC WR protein. DNA sequencing of cloned fragments of CWV and EMV confirmed that both these orthopoxviruses encode closely related, full length variants of the VAC and VAR open reading frames. The OV homologue is coded in the OV strain NZ2 BamHI-E fragment E2L open reading frame, which we reported is transcribed early postinfection; moreover, analysis of an NZ2 variant showed E2L was absent, indicating that E2L, like the VAC cognate, is nonessential for virus replication in cell culture. The parapoxvirus and orthopoxvirus correlates have about 20% amino acid sequence resemblance to African swine fever virus DNA binding protein p10, suggesting an ancestral relation of genes.
- Published
- 1996
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36. Sequence and transcriptional analysis of an orf virus gene encoding ankyrin-like repeat sequences.
- Author
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Sullivan JT, Fraser KM, Fleming SB, Robinson AJ, and Mercer AA
- Subjects
- Amino Acid Sequence, Base Sequence, Consensus Sequence, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid, Ankyrins chemistry, DNA, Viral genetics, Genes, Viral, Orf virus genetics, Repetitive Sequences, Nucleic Acid
- Abstract
A 1608 bp region located approximately 5.0 kb from the left end of the orf virus (OV) genome (strain NZ2) was sequenced. The sequence revealed a single open reading frame designated G1L. The predicted amino acid sequence of G1L contained eight ankyrinlike repeat sequences. Transcriptional analysis of G1L showed it was transcribed towards the genome terminus during the early phase of infection. S1 nuclease and primer extension analyses showed that the transcriptional start site of the gene was located a short distance downstream from an A + T-rich sequence similar to a vaccinia virus early promoter.
- Published
- 1995
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37. Homologs of vascular endothelial growth factor are encoded by the poxvirus orf virus.
- Author
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Lyttle DJ, Fraser KM, Fleming SB, Mercer AA, and Robinson AJ
- Subjects
- Amino Acid Sequence, Animals, Base Composition, Base Sequence, Cattle, Cells, Cultured, Endothelial Growth Factors chemistry, Genetic Variation, Genome, Viral, Lymphokines chemistry, Male, Models, Genetic, Molecular Sequence Data, Multigene Family, Restriction Mapping, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Testis cytology, Transcription, Genetic, Vascular Endothelial Growth Factor A, Vascular Endothelial Growth Factors, Viral Proteins chemistry, Endothelial Growth Factors genetics, Genes, Viral genetics, Lymphokines genetics, Orf virus genetics, Viral Proteins genetics
- Abstract
A gene encoding a polypeptide with homology to mammalian vascular endothelial growth factors (VEGFs) has been discovered in the genome of orf virus (OV), a parapoxvirus that affects sheep and goats and, occasionally, humans. The gene is transcribed abundantly early in infection and is found immediately outside the inverted terminal repeat at the right end of the genome. In the NZ2 strain of OV (OV NZ2), the gene encodes a polypeptide with a molecular size of 14.7 kDa, while in another strain, OV NZ7, there is a variant gene that encodes a polypeptide of 16 kDa. The OV NZ2 and OV NZ7 polypeptides show 22 to 27% and 16 to 23% identity, respectively, to the mammalian VEGFs. The viral polypeptides are only 41.1% identical to each other, and there is little homology between the two genes at the nucleotide level. Another unusual feature of these genes is their G+C content, particularly that of OV NZ7. In a genome that is otherwise 63% G+C, the OV NZ2 gene is 57.2% G+C and the OV NZ7 gene is 39.7% G+C. The OV NZ2 gene, but not the OV NZ7 gene, is homologous to the mammalian VEGF genes at the DNA level, suggesting that the gene has been acquired from a mammalian host and is undergoing genetic drift. The lesions induced in sheep and humans after infection with OV show extensive dermal vascular endothelial proliferation and dilatation, and it is likely that this is a direct effect of the expression of the VEGF-like gene.
- Published
- 1994
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38. Conservation of gene structure and arrangement between vaccinia virus and orf virus.
- Author
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Fleming SB, Blok J, Fraser KM, Mercer AA, and Robinson AJ
- Subjects
- Amino Acid Sequence, Base Sequence, Blotting, Northern, Cell Line, Conserved Sequence, DNA, Viral, Molecular Sequence Data, Open Reading Frames, Restriction Mapping, Sequence Homology, Amino Acid, Transcription, Genetic, Viral Proteins genetics, Genes, Viral, Orf virus genetics, Vaccinia virus genetics
- Abstract
A 3.3-kb BamHI fragment from the center of the orf virus (OV) NZ2 genome has been sequenced, revealing three major open reading frames (ORFs) with homology to vaccinia virus (VAC) genes. These ORFs have been designated F2L, F3R, and F4R and the proteins they encode were found to be homologous to VAC genes H4L (RNA polymerase-associated protein RAP94), H5R (35-kDa virion envelope antigen) and H6R (topoisomerase), respectively. The OV ORFs are arranged on the genome in an almost identical manner to their VAC counterparts revealing the common evolutionary origin of the two viruses despite the extreme difference in their G+C content. Like its VAC counterpart, F3R was shown to be transcribed early and late during infection. S1 and primer extension analysis located the 5' ends of F3R early transcripts to a position 15-16 nt and 5-10 nt, respectively, downstream from an AT-rich sequence resembling a VAC early promoter. The 5' ends of F3R late transcripts were located to an A within the sequence 5'-TAAAG, 41 nt downstream from the early promoter and 17 nt upstream from the initiation codon. S1 analysis of F2L, which is transcribed only late in infection, revealed transcripts initiating from within the sequence 5'-TAAATG. No transcriptional start point could be detected for F4R but the VAC late transcriptional initiation sequence TAAAT was found close to the predicted translational start point. Another late promoter-like sequence, 5'-TAAATG, was found at the 3' end of F2L. This preceded a short ORF tentatively designated as F1L and predicted to be the beginning of a homologue of VAC H3L.
- Published
- 1993
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39. In vivo recognition of orf virus early transcriptional promoters in a vaccinia virus recombinant.
- Author
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Fleming SB, Mercer AA, Fraser KM, Lyttle DJ, and Robinson AJ
- Subjects
- Animals, Base Sequence, Blotting, Northern, Cattle, DNA, Recombinant, DNA, Viral genetics, In Vitro Techniques, Molecular Sequence Data, RNA, Messenger genetics, RNA, Viral genetics, Transcription, Genetic, Vaccinia virus genetics, Gene Expression Regulation, Viral, Orf virus genetics, Promoter Regions, Genetic
- Abstract
The 4.4-kb BamHI-E fragment of the orf virus (OV) genome contains three discrete open reading frames designated ORF-pp, ORF-1, and ORF-3, all of which are flanked by vaccinia virus-like early transcriptional control sequences. To determine whether the vaccinia transcriptional machinery would recognize these promoters and faithfully transcribe OV genes in vivo the BamHI-E fragment was inserted into the thymidine kinase (TK) locus of vaccinia virus and the recombinant used in transcription studies. Northern blotting analysis of early RNA isolated from 143B-TK- cells infected with the recombinant virus showed that OV genes were transcribed and that the three transcripts of 0.70-(ORF-pp), 0.48- (ORF1), and 0.75-kb (ORF-3) were the same size as their counterparts in OV-infected cells. Analysis of the 5' end of transcripts by S1 nuclease and primer extension showed that the transcriptional start points (tsp) of ORF-pp, ORF-1, and ORF-3 in the recombinant were identical or within four nucleotides of the tsps of the same ORFs in OV. However, there were quantitative differences. ORF-1 was transcribed more efficiently in recombinant virus-infected cells than in those infected with OV and analysis of the putative promoter, 5'-AAAATTGTAAATGTA, showed that it was similar to the 7.5-kDa early promoter of vaccinia virus. This demonstrates that the transcriptional control sequences of OV genes are recognized by vaccinia virus transcriptional factors but that quantitative differences exist suggesting that the generically different transcriptional factors have different promoter sequence requirements for maximal transcription.
- Published
- 1992
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40. An orf virus sequence showing homology to the 14K 'fusion' protein of vaccinia virus.
- Author
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Naase M, Nicholson BH, Fraser KM, Mercer AA, and Robinson AJ
- Subjects
- Amino Acid Sequence, Base Sequence, Codon, Genes, Viral, Molecular Sequence Data, Protein Conformation, Sequence Alignment, Sequence Homology, Nucleic Acid, Transcription, Genetic, Viral Fusion Proteins genetics, Orf virus genetics, Vaccinia virus genetics, Viral Proteins genetics
- Abstract
The nucleotide sequence of a region of DNA 30 kb from the right end of the orf virus genome has been determined. Examination of the sequences revealed an open reading frame encoding a 10K peptide with significant amino acid homology to the 14K 'fusion' protein reported in vaccinia virus. The orf virus sequence has a 31% identity with the vaccinia virus protein, but a higher level of homology of core predicted residues. The secondary structure of both proteins is also similar. The occurrence of the TAAAT sequence upstream from the initiation codon indicates that the sequence is likely to be transcribed late in infection.
- Published
- 1991
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41. Vaccinia virus-like early transcriptional control sequences flank an early gene in orf virus.
- Author
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Fleming SB, Fraser KM, Mercer AA, and Robinson AJ
- Subjects
- Amino Acid Sequence, Base Sequence, Blotting, Northern, Gene Expression Regulation, Viral, Molecular Sequence Data, Open Reading Frames, Restriction Mapping, Templates, Genetic, Genes, Viral, Orf virus genetics, Promoter Regions, Genetic, Terminator Regions, Genetic, Transcription, Genetic, Vaccinia virus genetics
- Abstract
The purpose of this study was to map the initiation (tsp) and termination points of transcripts arising from an open reading frame (ORF3) found in the inverted terminal repeat of the orf virus genome and also, to identify probable transcriptional control sequences. Early transcripts of approx. 0.76 kb were mapped to ORF3 and found to be transcribed toward the ends of the genome. Using the S1 nuclease and primer-extension methods, the bulk of the tsp were mapped to a position 12-13 nucleotides (nt) downstream from a sequence which resembles A + T-rich vaccinia virus early promoters. The 5' ends were 81-82 nt upstream from the first ATG in ORF3. Most of 3' ends of the transcripts mapped to a region 24-32 nt downstream from a T5NT sequence found near the ORF3 stop codon. A second transcription termination point was found 25 nt downstream from another T5NT sequence located downstream and separated by 85 nt from the first. These results infer that the A + T-rich, early transcriptional control sequences found in other poxvirus genomes have been conserved in the G + C-rich genome of orf virus.
- Published
- 1991
- Full Text
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42. Repeat sequences from complex ds DNA viruses can be used as minisatellite probes for DNA fingerprinting.
- Author
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Crawford AM, Buchanan FC, Fraser KM, Robinson AJ, and Hill DF
- Subjects
- Animals, Baculoviridae genetics, Base Sequence, DNA Fingerprinting methods, Iridoviridae genetics, Molecular Sequence Data, Poxviridae genetics, DNA Fingerprinting veterinary, DNA Probes, DNA Viruses genetics, DNA, Viral, Repetitive Sequences, Nucleic Acid, Sheep genetics
- Abstract
In a search for new fingerprinting probes for use with sheep, repeat sequences derived from five poxviruses, an iridovirus and a baculovirus were screened against DNA from sheep pedigrees. Probes constructed from portions of the parapox viruses, orf virus and papular stomatitis virus and the baculovirus from the alfalfa looper, Autographa californica, nuclear polyhedrosis virus all gave fingerprint patterns. Probes from three other poxviruses and an iridovirus did not give useful banding patterns.
- Published
- 1991
- Full Text
- View/download PDF
43. Sequence analysis of the inverted terminal repetition in the genome of the parapoxvirus, orf virus.
- Author
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Fraser KM, Hill DF, Mercer AA, and Robinson AJ
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Blotting, Southern, Cloning, Molecular, Molecular Sequence Data, Nucleic Acid Hybridization, Promoter Regions, Genetic, Protein Biosynthesis, Repetitive Sequences, Nucleic Acid, Restriction Mapping, DNA, Viral genetics, Orf virus genetics, Poxviridae genetics
- Abstract
Two BamHI fragments from the right-hand terminal region of the orf virus genome have been sequenced. The bulk of the inverted terminal repetition (ITR) sequence is contained within these fragments and makes up 3388 bp of the 4425-bp sequence reported. The overall base composition of the larger sequence is 59.4% G + C and of the ITR, 60.2% G + C. An extremely G/C-rich (83.2%) block of sequence was found spanning the ITR/unique sequence junction. The bulk of the ITR could be divided into three blocks of directly repeated sequences. One block begins about 250 nucleotides from the terminus and is a direct repeat 15 bp long, repeated 14 times. The other blocks contain seven sequence sets ranging from 16 to 36 nucleotides which are repeated 2 to 4 times, interspersed with one another, interrelated in sequence, and sometimes separated by unique sequence. Eight open reading frames (ORFs), each with the potential to code for polypeptides of 50 residues or more, were identified. Three were found within the ITR, four spanned the ITR/unique sequence junction and one was found outside the ITR. A search for putative poxvirus transcriptional control signals indicated that three of the eight ORFs are likely to be transcribed early, all in the same direction toward the right end of the genome. Sequences of the type T(A)3-5T were found only twice in the sequence and only one preceded an ORF.
- Published
- 1990
- Full Text
- View/download PDF
44. A homologue of retroviral pseudoproteases in the parapoxvirus, orf virus.
- Author
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Mercer AA, Fraser KM, Stockwell PA, and Robinson AJ
- Subjects
- Animals, Base Sequence, Cloning, Molecular, Molecular Sequence Data, Orf virus enzymology, Retroviridae genetics, Sequence Homology, Nucleic Acid, DNA, Viral genetics, Orf virus genetics, Peptide Hydrolases genetics, Poxviridae genetics, Retroviridae enzymology
- Abstract
The nucleotide sequence of a near-terminal region of orf virus DNA was determined. Examination of the sequence revealed an open reading frame encoding a peptide with significant amino acid homology to the pseudoprotease domains recently identified in a number of retroviruses including mouse mammary tumor virus, simian Mason-Pfizer virus, maedi-visna virus, and equine infectious anaemia virus. The orf virus pseudoprotease shares up to 28% amino acid homology with retroviral pseudoproteases and appears to be a discrete transcriptional unit rather than a subunit of a larger polypeptide as is the case in retroviruses. The sharing of amino acid composition across such wide taxonomic boundaries suggests that this polypeptide has a functional significance in both retroviruses and poxviruses.
- Published
- 1989
- Full Text
- View/download PDF
45. Oxaprozin and sulindac in rheumatoid arthritis: a double-blind comparative trial.
- Author
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Zuccollo R, Mackinnon MJ, Fraser KM, Hall SM, and Palmer DG
- Subjects
- Adult, Aged, Clinical Trials as Topic, Double-Blind Method, Female, Humans, Male, Middle Aged, Oxaprozin, Propionates adverse effects, Sulindac adverse effects, Anti-Inflammatory Agents therapeutic use, Arthritis, Rheumatoid drug therapy, Indenes therapeutic use, Propionates therapeutic use, Sulindac therapeutic use
- Abstract
Oxaprozin, an anti-inflammatory agent with a half-life of 50 hours, was compared in regard to efficacy and tolerance with sulindac in a 12-week double-blind parallel treatment trial of rheumatoid arthritis. Oxaprozin was given as a single morning daily dose of 1200 mg, sulindac was given as 200 mg twice daily. Analysis of the results from the 20 patients (10 in each group) who completed the trial indicated that both drugs produced statistically significant improvement in morning stiffness, walking speed and the Ritchie index, but only sulindac produced significant improvement in hand function. Neither drug was associated with significant side-effects.
- Published
- 1983
- Full Text
- View/download PDF
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