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Among the biotic stresses, wilt disease severely affects tomato quality and productivity globally. The causal organism of this disease is Fusarium oxysporum f. sp. lycopersici (Fol), which is very well known and has a significant impact on the productivity of other crops as well. Efforts have been made to investigate the effect of plant growth-promoting bacteria (PGPB) on alleviating tomato wilt disease. Four PGPB strains, such as Pseudomonas aeruginosa BHUPSB01 (T1), Pseudomonas putida BHUPSB04 (T2), Paenibacillus polymyxa BHUPSB16 (T3), and Bacillus cereus IESDJP-V4 (T4), were used as inocula to treat Fol- challenged plants. The results revealed that PGPB treatments T1, T2, T3, and T4 were able to decrease the severity of Fusarium wilt in the tomato plants at different levels. Among the treatments, T3 displayed the strongest protective effect, with the lowest disease frequency, which was 15.25%. There were no significant differences observed in parameters such as fruit yield and relative water content in the PGPB-inoculated plants, although T3 and T4 showed minimal electrolyte leakage. Significant changes in chlorophyll fluorescence were also recorded. A lower level of H2O2 and malondialdehyde (MDA) was observed in the T3 and T4 treatments. In addition, proline accumulation was highest in the T3-treated plants. Antioxidative enzyme activities, such as catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD), significantly increased in the PGPB-treated plants. Furthermore, the highest phenylalanine ammonia-lyase (PAL) and polyphenol oxidase (PPO) activity was reported in the T3 and T4 plants, respectively. The PGPB-treated plants showed elevated expression of the PAL, PPO, PR3, PR2, SOD, CAT , and PO genes. This study's results reveal that PGPB strains can be utilized as biocontrol agents (BCAs) to enhance tomato resistance against Fusarium wilt. [ABSTRACT FROM AUTHOR]

Strawberries are planted globally as an important crop. Fusarium oxysporum f. sp. fragariae (Fof), a haploid mitosporic, pathogenic fungus with obvious host specificity, is responsible for an economically devastating soil-borne disease seriously threatening strawberry. Fusarium oxysporum is distributed in soils worldwide and causes vascular wilt and root rot disease in over 100 plant species. However, the formae speciales of F. oxysporum commonly have a very narrow host range, often restricted to a single host plant species. We isolated and identified pathogenic F. oxysporum from diseased strawberry samples collected from different provinces in China. Further analysis showed that among the 55 F. oxysporum isolates, only 70.91% belonged to Fof, and the remaining 29.09% were named Fo. The mycelial growth of Fof was faster than that of Fo at 20, 30, and 35 °C. The sporulation ability of Fof was weaker than that of Fo, and Fof presented a significantly higher germination rate under high temperatures. Fof and Fo from strawberry were not pathogenic to tomato or cucumber plants, and Fof showed significantly higher pathogenicity on strawberry than Fo. To explore the pathogenic mechanism of Fof, we knocked out SIX10 in Fof. The mycelial growth rate of ΔFofSIX10 was significantly slower than that of the wild type, but there were no significant differences in spore production. The pathogenicity of ΔFofSIX10 to strawberry was significantly weakened, showing decreased severity of symptoms, indicated by root and crown rot, and wilt. Our research provides a basis for understanding the interaction between F. oxysporum and the host strawberry and the occurrence and management of Fusarium disease on strawberry. [ABSTRACT FROM AUTHOR]

Main conclusion: Small RNA sequencing analysis in two chickpea genotypes, JG 62 (Fusarium wilt-susceptible) and WR 315 (Fusarium wilt-resistant), under Fusarium wilt stress led to identification of 544 miRNAs which included 406 known and 138 novel miRNAs. A total of 115 miRNAs showed differential expression in both the genotypes across different combinations. A miRNA, Car-miR398 targeted copper chaperone for superoxide dismutase (CCS) that, in turn, regulated superoxide dismutase (SOD) activity during chickpea–Foc interaction. Fusarium wilt (FW) of chickpea (Cicer arietinum L.) caused by Fusarium oxysporum f. sp. ciceris (Foc) is a destructive soil-borne disease that severely reduces the chickpea yield and quality globally. In the present study, we have investigated microRNAs and the microRNA/target gene crosstalk involved in chickpea resistance to FW. The control and stress samples from two genotypes, JG 62 (FW-susceptible) and WR 315 (FW-resistant), collected at 10 days post-inoculation (dpi), were selected for small RNA sequencing. A total of 12 libraries were constructed and sequenced using Illumina HiSeq 2500 platform. The sequencing and in silico analyses revealed the identification of 544 miRNAs which included 406 known and 138 novel miRNAs. A total of 50 miRNAs were physically co-localized with Foc-resistance QTLs present on chromosome 2 (also known as Foc hotspot). A total of 115 miRNAs showed differential expression in both the genotypes across different combinations. Prediction and functional annotation of miRNA targets revealed their role in transcription regulation, disease resistance, defense response, metabolism, etc. Ten miRNAs and their targets were validated using poly(A)-based qRT-PCR in two genotypes grown under lab and field conditions. Many miRNAs and their targets showed genotype-specific expression. The expression profiling also highlighted, both, similar and different expression patterns for the same sets of miRNA and mRNA at different stages of Foc infection. A high correlation in expression patterns of the miRNAs and their targets in lab- and field-grown plant samples was observed. Interestingly, Car-miR398 targeted copper chaperone for superoxide dismutase (CCS) that, in turn, regulated superoxide dismutase (SOD) activity during chickpea–Foc interaction. The cleavage site in targets was mapped for three miRNAs by analyzing publicly available degradome data for chickpea. The study, for the first time, provides novel insights into microRNA-mediated regulation of resistance and susceptibility mechanisms in chickpea against FW and opens up avenues for the development of the wilt-resistant cultivars in chickpea. [ABSTRACT FROM AUTHOR]

The objective of this study was to identify and characterize the fungal pathogens responsible for wilt diseases in solanaceous crops, specifically tomato, brinjal, and chili, in the Kashmir valley. Through both morphological and molecular analyses, including DNA barcoding of the ITS, TEF, RPB1, and RPB2 genomic regions, Fusarium incarnatum and Fusarium avenaceum were identified as the primary causal agents of wilt in tomato and brinjal, and chili, respectively. Pathogenicity tests confirmed the virulence of these pathogens, with typical wilt symptoms observed upon inoculation. This represents the first report of F. incarnatum and F. avenaceum as wilt pathogens in solanaceous crops in India. Phylogenetic analysis further confirmed the genetic variability of these pathogens, revealing their expanding host range. The findings underscore the growing adaptability of these Fusarium species to diverse agricultural systems and highlight the urgent need for targeted disease management strategies to mitigate the significant yield losses caused by Fusarium wilt in solanaceous vegetable production. [ABSTRACT FROM AUTHOR]

Melon is an important cash crop grown worldwide, with China leading the world in melon acreage. Melon wilt is becoming more common as the area under melon cultivation gradually increases. Therefore, it is crucial to understand the resistance pattern of Fusarium wilt in melons. In this work, among the four test melon cultivars, YG was highly resistant to Fusarium wilt and 1455 was disease‐resistant. However, 5657 was susceptible, while 5455 was highly susceptible to the disease. We detected 71,852 differentially expressed genes in 16 combinations, including 37,382 with up‐regulation and 3470 with down‐regulation, and we investigated 11 genes associated with resistance to Fusarium wilt through bioinformatics and transcriptome analysis. We identified two differentially expressed cinnamyl alcohol dehydrogenases (CAD) that were down‐regulated in the susceptible melon material in contrast to the resistant variety. Nine chitinase (CHT) genes were differentially expressed, with four showing up‐regulation and four showing down‐regulation in the susceptible compared to the resistant melon material. The MeloCHT genes were located on chromosomes 2, 6, 8, 11 and 12, with four of them on chromosome 8. MeloCAD1 was located on chromosome 1 and MeloCAD2 on chromosome 8. The physicochemical properties of the encoded proteins were predicted by bioinformatics, including theoretical isoelectric point, instability coefficient, relative molecular mass, lipid solubility index and hydrophilicity index. The genes encode proteins with α‐helix, extended strand, random coils and β‐turns. This study provides fundamental knowledge on the transcriptome of melons and establishes a foundation for future research on the detection and application of Fusarium wilt‐resistant genes in melons. [ABSTRACT FROM AUTHOR]

The study assessed Trichoderma spp. as a biocontrol agent for managing wilt‐nematode complex in tomato crops, aiming to mitigate yield losses. Fusarium sp. and Meloidogyne sp. were isolated from infected plant samples and confirmed molecularly and morphologically as Fusarium oxysporum f.sp. lycopersici and Meloidogyne incognita. Four Trichoderma spp. procured from the Department of Plant Pathology, Tamil Nadu Agricultural University, India were identified molecularly as Trichoderma asperellum (Tv1), Trichoderma asperelloides (Tasd1), Trichoderma harzianum (Th1), and Trichoderma koningiopsis (Tk1) utilizing ITS and TEF1 primer pairs. Among them, Tv1 effectively inhibited the mycelial growth of pathogen isolates. Furthermore, crude metabolite of Tv1 exhibited similar effects. The mortality rate of M. incognita J2s ranged from 90.48% to 100% after 24–72 h of incubation and inhibition percentage of egg hatching reached 90.20%. The shoot length, root length, fresh weight, and dry weight of the tomato plants treated with Tv1 conidia were increased. In a pot experiment, Tv1 treatment reduced disease incidence by 64.57%, comparable to carbendazim treatment (82.32%). Tv1‐treated plants had fewer root galls, egg masses, and J2s per 100 g of roots than the inoculated‐untreated control plants. The root‐knot index (RKI) was significantly lower in plants treated with carbafuran (1.98 ± 0.047) and Tv1 (3.06 ± 0.086) than in control (4.47 ± 0.109). The bio‐control efficiency of Tv1 against M. incognita was 21.04%, and the nematodes' reproductive factor (RF) declined to 0.53 in Tv1 treatment group. Based on the findings above, it was established that Tv1 effectively controlled nematode populations and wilt disease when applied in soil. [ABSTRACT FROM AUTHOR]

Fusarium wilt of banana is a major production constraint in India, prompting banana growers to replace bananas with less remunerative crops. Effective disease management practices thus need to be developed and implemented to prevent further spread and damage caused by Fusarium oxysporum f. sp. cubense (Foc), the cause of Fusarium wilt. Currently, knowledge of disease incidence, affected varieties, and the geographical spread of Foc races in India are only scantily available. An extensive field survey was conducted in 53 districts of 16 major banana-growing states of and one union territory of India that covered both tropical and subtropical regions. Disease incidence ranged from 0 to 95% on farms, with Cavendish bananas (AAA) most affected. No Fusarium wilt symptoms due to Foc R1 were observed in Nendran (AAB) or Red Banana (AAA) in South India. During the survey, 293 Foc isolates were collected from Cavendish, Pisang Awak (ABB), Silk (AAB), Monthan (ABB), Neypoovan (AB), and Mysore (AAB) bananas. Isolate diversity was assessed through Vegetative Compatibility Group (VCG) analyses, sequencing of EF1α gene sequences, phylogenetic analyses, and characterisation by SIX gene composition. Thirteen VCGs were identified, of which VCGs 0124, 0125, 01220, and 01213/16 were dominant and infected Cavendish bananas. Phylogenetic analysis divided the Indian Foc isolates into race 1 (R1), subtropical race 4 (STR4), and tropical race 4 (TR4). Secreted in Xylem (SIX) gene analyses indicated that the effector genes SIX4 and SIX6 were present in the VCGs 0124, 0124/5, 0125, and 01220 of race 1, SIX7 was present only in Foc STR4, and SIX8 was found only in Foc R4 (TR4 and STR4) isolates. Insights into the geographical distribution of Foc races, and their interactions with banana varieties, can guide integrated disease management intervention strategies across India. [ABSTRACT FROM AUTHOR]

On commercial banana (Musa spp.) plantations, soils are often supplemented with phosphorus (P) fertiliser to optimise production. Such additions may influence the diversity and function of soil microbial communities, which play important roles in P cycling and affect plant fitness. Here, we characterised the effects of P addition on the diversity and function of banana-associated microbial communities. P addition was associated with significant increases in soil P and the activities of alpha-glucosidase, chitinase, arylsulphatase, and acid phosphatase, but not beta-glucosidase or xylosidase. P addition also expedited bunch emergence and harvest, but did not influence fruit yield, plant height, or foliar P. There were no significant effects of P addition on the alpha or beta diversity of bacterial, fungal, and nematode communities, including members of the core microbiome. The only exceptions to this was an increase in the relative abundance of a Fusarium population in roots. These results indicate that phosphorus application to banana soils may stimulate microbial enzyme activities with minor or negligible effects on microbial diversity. [ABSTRACT FROM AUTHOR]

Background: Fusarium wilt (FW) and sterility mosaic disease (SMD) are two important biotic constraints to pigeonpea production worldwide that can cause loss up to 100 per cent. Host plant resistance is the most durable and economical way to manage these diseases. Methods: Thirty five pigeonpea genotypes comprises [mid early, mid late, dual and hybrid (mid early) group] were evaluated in a fusarium wilt and sterility-mosaic disease-screening nursery at three location viz., Sardarkrushinagar, Bharuch and Vadodara in Gujarat during kharif season 2015-16, to identify genotypes having resistance to both the diseases. Result: Five genotypes identified in each group of pigeonpea viz; mid early (SKNP1303, SKNP 1021, SKNP 0805, SKNP 0920, SKNP 1004), mid late (SKNP 1233, SKNP 10-34, AAUVT 07-10, AAUVT 09-24, GJP1207) and dual (SKNP-1119, BP 06-33, BP 08-06, BP 10-03, BP 10-04) and in hybrid (mid early) group only one hybrid i.e. SKNPCH 1211 were found combined resistance to Fusarium wilt and SMD (< 10% disease). These diverse genotypes that are resistant to Fusarium wilt and SMD may be useful in pigeonpea disease resistance breeding programme while hybrid identified as resistance to both the diseases may be recommended for commercial cultivation. [ABSTRACT FROM AUTHOR]

Aims: Modern high input-based intensive cropping systems often lead to accumulation of phenolic acids in the soil which promote the development of soil diseases. While this can be suppressed by intercropping. This research assessed the impact of intercropping on Fusarium wilt from the perspective of soil acidification under cinnamic acid and Fusarium commune stress. Methods: The treatments were not inoculated with F. commune, while the faba beans were inoculated with this pathogen. Infected plants were also treated with cinnamic acid. The development of wilt, together with seedling dry weight, soil chemical properties, soil enzymes, soil amino acids, microbial diversity, and the community structure and composition from monocropping and intercropping systems, were investigated. Results: Under the combined stress of cinnamic acid and F. commune, relative to monocropping, intercropping with wheat increased the soil pH value, reduced most of the soil amino acid contents, increased bacterial community diversity, and modified the community structures and compositions of bacteria and fungi, increased the abundance of both Sphingomonas and radyrhizobium and reduced Fusarium and increased soil enzyme activities and nutrient; moreover, it promoted plant growth, and reduced the disease index. Conclusion: Intercropping alleviated soil acidification and suppressed faba bean's Fusarium wilt following F. commune infection and cinnamic acid stress. [ABSTRACT FROM AUTHOR]

Many Fusarium oxysporum formae speciales produce small, infection-dependent effector proteins called “secreted in xylem” (SIX) proteins. These proteins are secreted into the xylem of a plant during the infection process and are thought to promote virulence. In this study, a collection of Fusarium oxysporum isolates composed primarily of different races of Fusarium oxysporum f. sp. vasinfectum (FOV) was screened for the presence of 14 SIX effector genes (SIX1 to SIX14). Our results showed that some of the most virulent FOV races, FOV4 and FOV7, share a common SIX effector: SIX9. This effector is largely absent in other FOV races in North America, making SIX9 a potential target for rapid detection of these highly virulent FOV strains and enabling race-specific FOV quantification in infected host plants. [Figure: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

The extracts of Schotia brachypetala were tested against the molecularly identified fungi Alternaria alternata, Botrytis cinerea, and Fusarium oxysporum, which cause early blight of tomatoes, gray mold of cucumber immature fruits, and Fusarium wilt, respectively. Leaves and branches of S. brachypetala were extracted using acetone and bio-assayed for their antifungal activity at 2%, 4%, and 6% when applied to white mulberry wood samples. Using high-performance liquid chromatography analysis, the most abundant compounds in leaf extract were kaempferol (37900 µg/g extract) and gallic acid (7480 µg/g extract), and in branch extract were gallic acid (3120 µg/g extract) and chlorogenic acid (1320 µg/g extract). By increasing the extract concentration to 6%, the percentage inhibition of fungal mycelial was significantly increased compared to the positive (Cure-M) and negative control samples. This study indicates that extracts from leaves and branches of S. brachypetala can be effective as bio-based agents in wood protection and that they can prevent the growth of pathogenic fungi.

Relevance. The use of modern biotechnological methods in breeding, namely the doubled haploid technology and marker-assisted selection, can significantly reduce the time for creating pure lines with valuable properties. Fusarium wilt is one of the economically important diseases of white cabbage. Therefore, the development of a MAS method for selecting doubled haploids resistant to fusarium wilt would allow fast selection of resistant pure lines. Moreover, the resistance testing can be done at any plant developmental stage.Materials and methods. The response of hybrids Gertsoginya F1, Poisk 2018 F1 (resistant samples, the originator – the Agrofirm “Poisk”) and Slava 1305 (susceptible sample, the originator – Federal Scientific Vegetable Center) towards Fusarium oxysporum f. sp. conglutinans infection was determined by evaluating their growth on the inoculated soil. To test the efficiency of the FocBNUf/r marker to the polymorphic region of the FocBo1 gene, the markers were tested on resistant and susceptible genotypes. Then the markers were applied to analyze 60 doubled haploids of 12 different genotypes.Results. It was demonstrated that the FocBNUf/r marker effectively differentiated resistant and susceptible samples. Doubled haploids were obtained from 12 different breeding samples for FocBNUf/r marker-based selection of fusarium wilt resistant plants. PCR testing of doubled haploids for fusarium resistance allowed us to select 6.7-100% of plants with the fusarium resistance gene in a homozygous state in 8 genotypes. 4 genotypes of doubled haploids that did not carry the resistance gene were eliminated from the breeding program.Conclusion. The FocBNUf/r marker effectively identified resistant and susceptible samples, as well as differentiates homozygous and heterozygous plants. FocBNUf/r marker was used to select resistant doubled haploids of white cabbage at the seedling stage. Thus, it was possible not only to accelerate the production of pure lines by obtaining doubled haploids, but also to accelerate the selection of valuable samples carrying the gene of resistance to fusarium, which makes it possible to avoid the labor-intensive selection of resistant lines on inoculated soil.

Abstract Fusarium wilt of banana, caused by Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4), is a widely distributed soilborne disease that poses a serious threat to banana production. Many control measures have been implemented but have not been effective. Here, we evaluated a combined strategy for Fusarium wilt control that involves a biological agent (Bacillus velezensis strain EB1) and a bioactive compound (potassium sorbate). Our results showed that potassium sorbate inhibited Foc TR4 in a dose-dependent manner. Potassium sorbate did not limit the growth of EB1 in vitro; instead, it promoted the growth and antagonistic ability of EB1 by upregulating the expression of antagonism-related genes. In greenhouse experiments, the combined application of EB1 and potassium sorbate significantly reduced the disease index of Fusarium wilt by suppressing fungal growth in the roots and promoting plant growth. Overall, our results demonstrated that potassium sorbate and B. velezensis EB1 can be used together for the sustainable management of banana Fusarium wilt.

Fusarium wilt of banana, caused by Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4), is a widely distributed soilborne disease that poses a serious threat to banana production. Many control measures have been implemented but have not been effective. Here, we evaluated a combined strategy for Fusarium wilt control that involves a biological agent (Bacillus velezensis strain EB1) and a bioactive compound (potassium sorbate). Our results showed that potassium sorbate inhibited Foc TR4 in a dose-dependent manner. Potassium sorbate did not limit the growth of EB1 in vitro; instead, it promoted the growth and antagonistic ability of EB1 by upregulating the expression of antagonism-related genes. In greenhouse experiments, the combined application of EB1 and potassium sorbate significantly reduced the disease index of Fusarium wilt by suppressing fungal growth in the roots and promoting plant growth. Overall, our results demonstrated that potassium sorbate and B. velezensis EB1 can be used together for the sustainable management of banana Fusarium wilt. [ABSTRACT FROM AUTHOR]

Fusarium wilt caused by Fusarium oxysporum f. sp. pisi (Fop) poses significant threats to pea cultivation worldwide. Controlling this disease is mainly achieved through the integration of various disease management procedures, among which biological control has proven to be a safe and effective approach. This study aims to extract and identify antifungal secondary metabolites from Streptomyces alboflavus KRO3 strain and assess their effectiveness in inhibiting the in vitro growth of Fop. This bacterial strain exerts in vitro antagonistic activity against Fop, achieving highly significant inhibition over one week. The ethyl acetate extract, obtained from its ISP2 agar medium culture, also exhibited strong antifungal activity, maintaining an inhibition rate of approximately 90% at concentrations up to 250 µg/plug compared to the control. Thus, the organic extract has been fractionated using chromatographic techniques and its bioguided purification allowed us to isolate the main bioactive compound. This latter was identified as metacycloprodigiosin using nuclear magnetic resonance (NMR) spectroscopy, electrospray ionization mass spectrometry (ESI-MS), and specific optical rotation data. Metacycloprodigiosin demonstrates dose-dependent inhibitory activity against the phytopathogen with an effective concentration of 125 µg/plug. The other secondary metabolites present in the ethyl acetate extract were also identified by gas chromatography–mass spectrometry (GC-MS) and nuclear magnetic resonance (NMR). This study highlighted the potential of S. alboflavus KRO3 strain and its antimicrobial compounds for the management of the pea pathogen Fusarium oxysporum f. sp. pisi. [ABSTRACT FROM AUTHOR]

Background: The chickpea wilt complex caused by several soil-borne pathogens, is the most destructive disease of chickpea that causes severe losses in yield worldwide. The development of a resistant variety is the most appropriate approach for managing the disease. Methods: The present investigation was aimed to find out the resistant sources against the wilt complex of chickpea under pot conditions and studies on biochemical characters responsible for disease resistance during rabi 2018-19 and 2019-20 at Anand Agricultural University, Anand, Gujarat. Result: Among the thirty-seven varieties/germplasm of chickpea, the final disease reaction of two years revealed that two varieties/germplasm viz., GJG-6 and GAG-0624 showed a resistant reaction and three varieties/germplasm (GJG-3, Dayadara and Khedbrahma) showed a moderately resistant reaction. The biochemical analysis of the resistant and susceptible varieties/germplasm revealed that healthy roots of resistant and susceptible germplasm showed higher moisture content (85.90-88.42%), while it was lower (74.71-80.22%) in diseased roots. Concerning protein content, the least (32.14%) decrease in protein content was recorded in resistant germplasm, whereas, the highest decrease of 41.79 per cent was recorded in susceptible germplasm. W.r.t. to phenol content, diseased roots of resistant and susceptible germplasm contained higher phenol content compared to healthy roots. Similarly, the minimum per cent decrease in total soluble sugars content (32.14%) was observed in resistant germplasm, while it was highest (41.82%) in susceptible germplasm. [ABSTRACT FROM AUTHOR]

In 2023, a severe outbreak led to a 70% mortality rate among Cyclamen persicum plants in Holambra, São Paulo, prompting an investigation to identify the causal agent. Symptomatic plants were sampled, and the fungus, designated CMAA 1919, was isolated and identified through morphological analysis. Pathogenicity was verified via Koch's postulates, with inoculated plants replicating wilt symptoms. To support genomic characterization of the pathogen, whole-genome sequencing was conducted using the Illumina platform. Genomic DNA was extracted, sequenced, and processed, resulting in a 48.9 Mb genome with 200x coverage and 97.5% completeness. Phylogenetic analysis positioned CMAA 1919 within a Fusarium cluster, confirming its closest relation to Fusarium oxysporum strain Fo47 (99.07% genomic similarity) and other pathogenic strains. This study presents the first genomic and morphological description of Fusarium oxysporum f. sp. cyclaminis (CMAA 1919), the causative agent of Fusarium wilt in cyclamen in Brazil. Significance: This work presents the first sequencing of a representative isolate of Fusarium oxysporum f. sp. cyclaminis (Focy), one of the most damaging pathogens for cyclamen (Cyclamen persicum L.). The availability of the complete genome of Focy enhances our understanding of its biology, ecology, and pathogenicity, thereby facilitating the development of sustainable strategies for disease management and crop protection. Despite the previously reported occurrence of this pathogen based only on symptoms and pathogenicity tests on 1970s, the sequenced strain CMAA 1919 provides the first genomic and morphological description of this pathogen, which causes the Fusarium wilt on cyclamen in Brazil. This information provides a valuable safeguard for cyclamen cultivation, ensuring the long-term sustainability of this crop in the Brazilian ornamental plant market. [ABSTRACT FROM AUTHOR]

Fusarium wilt, caused by the soilborne fungal pathogen Fusarium oxysporum f. sp. lactucae (FOL), is an economically important disease of lettuce (Lactuca sativa) throughout the world. Four pathogenic races of FOL are reported, though only race 1 is known to exist in the United States. Recently, Californian lettuce growers have expressed increasing concern about Fusarium wilt, as some race 1‐resistant cultivars have exhibited susceptibility, and some susceptible cultivars have displayed reduced disease severity. To determine whether such changes in disease patterns are responses to potentially novel variants, we collected infected plants from commercial fields in the Salinas Valley and Santa Maria regions, isolated the fungus, and conducted a series of pathogenicity tests using a set of FOL race differential cultivars over 2 years (2022 and 2023) in controlled conditions. Pathogenicity tests revealed two new FOL variants that elicited novel disease reaction patterns on the set of differential cultivars that have not been previously described. Isolates Fol621 and Fol621s were less aggressive on race 1‐susceptible Banchu Red Fire, designated Variant‐1. Isolate VSP‐0916 incited severe Fusarium wilt on race 1‐resistant Costa Rica No. 4, designated Variant‐2. Moreover, VSP‐0916 exhibited high aggressiveness and the ability to induce disease in other race 1‐resistant cultivars. This study is the first documentation, to our knowledge, of the occurrence of FOL‐inciting Fusarium wilt on race 1‐resistant lettuce in the United States. Our work provides valuable information critical for the development of Fusarium wilt management strategies, including broad‐spectrum resistance breeding efforts against multiple FOL races. [ABSTRACT FROM AUTHOR]

The article focuses on the use of botanicals to manage Fusarium wilt disease in pigeonpea under in vitro conditions. It discusses the crop's significance, particularly in India, where pigeonpea is a major pulse crop and faces challenges from Fusarium wilt, caused by Fusarium udum. It highlights an experimental study conducted to evaluate the effectiveness of various botanical extracts against the pathogen.

Introduction: Fusarium wilt, caused by Fusarium oxysporum f. sp. cubense (Foc), poses a significant global threat to banana cultivation. Conventional methods of disease management are increasingly challenged, thus making it necessary to explore alternative strategies. Bacterial endophytes, particularly from resistant genotypes, are gaining attention as potential biocontrol agents. Sphingobacterium thalpophilum, isolated from the resistant banana cultivar Pisang lilin (JALHSB010000001-JALHSB010000029), presents an intriguing prospect for combating Fusarium wilt. However, its underlying biocontrol mechanisms remain poorly understood. This study aimed to elucidate the antifungal efficacy of S. thalpophilum NMS02 S296 against Foc and explore its biocontrol mechanisms at the genomic level. Methods: Whole genome sequencing of S. thalpophilum NMS02 S296 was conducted using next-generation sequencing technologies and bioinformatics analyses were performed to identify genes associated with antifungal properties. In vitro assays were used to assess the inhibitory effects of the bacterial isolate on the mycelial growth of Foc. To explore the biomolecules responsible for the observed antagonistic activity, metabolites diffused into the agar at the zone of inhibition between Foc S16 and S. thalpophilum NMS02 S296 were extracted and identified. Results: Whole genome sequencing revealed an array of genes encoding antifungal enzymes and secondary metabolites in S. thalpophilum NMS02 S296. In vitro experiments demonstrated significant inhibition of Foc mycelial growth by the bacterial endophyte. Comparative genomic analysis highlighted unique genomic features in S. thalpophilum linked to its biocontrol potential, setting it apart from other bacterial species. Discussion: The study underscores the remarkable antifungal efficacy of S. thalpophilum NMS02 S296 against Fusarium wilt. The genetic basis for its biocontrol potential was elucidated through whole genome sequencing, shedding light on the mechanisms behind its antifungal activity. This study advanced our understanding of bacterial endophytes as biocontrol agents and offers a promising avenue for plant growth promotion towards sustainable strategies to mitigate Fusarium wilt in banana cultivation. [ABSTRACT FROM AUTHOR]

Cotton (Gossypium spp.) is the most important fibre crop worldwide. Black root rot and Fusarium wilt are two major diseases of cotton caused by soil-borne Berkeleyomyces rouxiae and Fusarium oxysporum f. sp. vasinfectum (Fov), respectively. Phenotyping plant symptoms caused by soil-borne pathogens has always been a challenge. To increase the uniformity of infection, we adapted a seedling screening method that directly uses liquid cultures to inoculate the plant roots and the soil. Four isolates, each of B. rouxiae and Fov, were collected from cotton fields in Australia and were characterised for virulence on cotton under controlled plant growth conditions. While the identities of all four B. rouxiae isolates were confirmed by multilocus sequencing, only two of them were found to be pathogenic on cotton, suggesting variability in the ability of isolates of this species to cause disease. The four Fov isolates were phylogenetically clustered together with the other Australian Fov isolates and displayed both external and internal symptoms characteristic of Fusarium wilt on cotton plants. Furthermore, the isolates appeared to induce varied levels of plant disease severity indicating differences in their virulence on cotton. To contrast the virulence of the Fov isolates, four putatively non-pathogenic Fusarium oxysporum (Fo) isolates collected from cotton seedlings exhibiting atypical wilt symptoms were assessed for their ability to colonise cotton host. Despite the absence of Secreted in Xylem genes (SIX6, SIX11, SIX13 and SIX14) characteristic of Fov, all four Fo isolates retained the ability to colonise cotton and induce wilt symptoms. This suggests that slightly virulent strains of Fo may contribute to the overall occurrence of Fusarium wilt in cotton fields. Findings from this study will allow better distinction to be made between plant pathogens and endophytes and allow fungal effectors underpinning pathogenicity to be explored. [ABSTRACT FROM AUTHOR]

Wilt and stem rot (WSR) is an emerging syndrome threatening cut lisianthus (Eustoma russellianum) production in Lam Dong province, Vietnam. The disease was observed in all 13 inspected commercial lisianthus greenhouses across major lisianthus cultivation areas in Lam Dong, including Da Lat, Lac Duong, Don Duong, and Duc Trong, with incidence increasing with plant age, ranging from 7.5 to 32.4%. Infected plants displayed stunting, wilting, stem rot and blight, and dieback, with predominance of wilt and stem rot. The disease showed polycyclic behavior, with symptoms shifting from random or scattered in young plants to clustered patterns after the initial flower cutting. Forty-one Fusaria-like fungal isolates recovered from diseased lisianthus plants were identified as Fusarium vanleeuwenii (28 isolates), Neocosmospora solani (11 isolates), and F. annulatum (2 isolates) based on morphological observations and phylogenetic analysis of the internal transcribed spacer (ITS) region and translation elongation factor 1-alpha (TEF-1α) genes. The composition of Fusaria species varied across sites, with F. vanleeuwenii being consistently present. Pathogenicity tests confirmed that isolates of F. vanleeuwenii Li-Fo9511, N. solani Li-Fs4311, and F. annulatum Li-Fp3051 caused typical stem rot in in-vitro assays. In-planta assays showed wilting in seedlings starting two weeks post-infection, with a remarkable increase in disease incidence and severity between five and six weeks, particularly for F. vanleeuwenii Li-Fo9511. The pathogens were re-isolated and morphologically confirmed, fulfilling Koch’s postulates. This is the first report of F. vanleeuwenii, N. solani, and F. annulatum as pathogens of lisianthus WSR in Vietnam, highlighting the need for effective control strategies. [ABSTRACT FROM AUTHOR]

Hot pepper (Capsicum annuum L.) is essential in Ethiopian agriculture but is increasingly threatened by Fusarium wilt, caused by Fusarium oxysporum f. sp. capsici, which severely affects yields and farmer livelihoods in Northwest Ethiopia. This study assessed wilt incidence, severity, and farmer practices across four districts in West Gojjam Zone (Womberma, Burie Zuria, Jabi Tehinan, and Dembecha Zuria). Surveys from 128 farmers and tests on 67 fungal isolates revealed that Burie Zuria faced the highest disease incidence (56.6%) and severity (52.5%), while Womberma had the lowest rates. The most pathogenic isolate, 4WBG1, showed 100% incidence and high severity (82.5%) and 100% AUDPC value. Agronomic practices like seed sourcing and crop rotation influenced disease control, yet only 23.4% of farmers used chemical or cultural controls, with 11% applying Mancozeb. These findings highlight the need for improved management strategies and resistant varieties to safeguard hot pepper production. [ABSTRACT FROM AUTHOR]

Fusarium oxysporum is one of the most economically important plant fungal pathogens, causing devastating Fusarium wilt diseases on a diverse range of hosts, including many key crop plants. Consequently, F. oxysporum has been the subject of extensive research to help develop and improve crop protection strategies. The sequencing of the F. oxysporum genome 14 years ago has greatly accelerated the discovery and characterization of key genes contributing to F. oxysporum biology and virulence. In this review, we summarize important findings on the molecular mechanisms of F. oxysporum growth, reproduction, and virulence. In particular, we focus on genes studied through mutant analysis, covering genes involved in diverse processes such as metabolism, stress tolerance, sporulation, and pathogenicity, as well as the signaling pathways that regulate them. In doing so, we hope to present a comprehensive review of the molecular understanding of F. oxysporum that will aid the future study of this and related species. [ABSTRACT FROM AUTHOR]

The intensified concerns related to agrochemicals' ecological and health risks have encouraged the exploration of microbial agents as eco-friendly alternatives. Some members of Bacillus spp. are potential plant-growth-promoting agents and benefit numerous crop plants globally. This study aimed to explore the beneficial effects of two Bacillus strains (B. subtilis strain IS1 and B. amyloliquificiens strain IS6) capable of alleviating the growth of tomato plants against salinity stress and Fusarium wilt disease. These strains were able to significantly promote the growth of tomato plants and biomass accumulation in pot trials in the absence of any stress. Under salinity stress conditions (150 mM NaCl), B. subtilis strain IS1 demonstrated superior performance and significantly increased shoot length (45.74%), root length (101.39%), fresh biomass (62.17%), and dry biomass (49.69%) contents compared to control plants. Similarly, B. subtilis strain IS1 (63.7%) and B. amyloliquificiens strain IS6 (32.1%) effectively suppressed Fusarium wilt disease and significantly increased plant growth indices compared to the pathogen control. Furthermore, these strains increased the production of chlorophyll, carotenoid, and total phenolic contents. They significantly affected the activities of enzymes involved in antioxidant machinery and the phenylpropanoid pathway. Hence, this study effectively demonstrates that these Bacillus strains can effectively alleviate the growth of tomato plants under multiple stress conditions and can be used to develop bio-based formulations for use in the fields. [ABSTRACT FROM AUTHOR]

Fusarium wilt, caused by Fusarium oxysporum f. sp. fordiis in Vernicia fordii, manifests as severe symptoms that significantly reduce global tung oil yield. However, the molecular-mechanisms of the Vernicia-Fusarium interaction are yet to be fully elucidated. Here, we cloned VfLRR-RLK1 from tung tree roots, which contained 1134 bp, encoding 378 AA. To further analyze VfLRR-RLK1 function in resistance to Fusarium wilt, we obtained stable T4-generation transgenic Arabidopsis thaliana and tung tree VfLRR-RLK1 virus-induced gene silencing (VIGS) RNAi plants. A. thaliana plants overexpressing VfLRR-RLK1 exhibited more robust root development and markedly increased Fusarium wilt disease resistance. In response to Fusarium wilt stress, transgenic A. thaliana exhibited increased catalase (CAT) and superoxide dismutase (SOD) enzyme activities, while showing reduced O2− and hydrogen peroxide (H2O2) accumulation. The findings suggest that VfLRR-RLK1 may diminish plant reactive oxygen species (ROS) levels and foster root development by activating the ROS antioxidant scavenging system during plant Pattern Triggered Immunity responses, enhancing resistance to Fusarium wilt. The study on the function of VfLRR-RLK1 is crucial in breeding programs aimed at developing tung tree resistant to Fusarium wilt, and lays the groundwork for more effective disease management strategies and the cultivation of tung tree varieties with enhanced resistance to this disease. [ABSTRACT FROM AUTHOR]

Enhancing plants' resistance against FW is crucial for ensuring a sustainable global chickpea production. The present study focuses on the identification of fungal pathogens and the assessment of ninety-six chickpea samples for Fusarium wilt from the International Center for Agricultural Research in the Dry Areas (ICARDA)'s collection. Eight fungal isolates were recovered from the symptomatic chickpeas. Polyphasic identification was conducted by comparing the internal transcribed spacer region (ITS), the elongation factor 1-α (tef1-α), and beta-tubulin (tub2). Among them, Neocosmospora solani, N. nelsonii, N. falciformis, N. brevis, Fusarium brachygibbosum, and F. gossypinum were identified. An analysis of the genetic diversity of chickpeas, using 69 polymorphic simple sequence repeat (SSR) markers, revealed a total of 191 alleles across all markers, with, on average, each SSR marker detecting approximately 2.8 alleles. A STRUCTURE analysis delineated lines into two distinct sub-groups (K = 2). Association mapping, using the generalized linear model (GLM) and mixed linear model (MLM) approaches, identified six and five marker–trait associations (MTAs) for FW resistance, respectively. Notably, these TA42, TA125 (A) and TA125 (B), TA37, and TAASH MTAs, commonly found in both models, emerge as potential candidates for the targeted enhancement of FW resistance in chickpeas. To our knowledge, this study represents an inaugural report on the association mapping of genomic loci governing FW resistance in chickpeas from the ICARDA's accessions. [ABSTRACT FROM AUTHOR]

Deciphering effector genes of plant‐pathogenic fungi is key to understanding their role in pathogenicity because acquisition of such genes through horizontal transfer may result in emergence of new pathogenic races. A full‐length (837 bp) Six1 gene has been cloned and sequenced from the genome of Fusarium oxysporum FPo isolated from roots of wilted potatoes in West Bengal, India. The isolate was identified based on conidial morphology and sequencing of the 28S rDNA and elongation factor 1α gene. Koch's postulates established that the isolate could incite wilting in potato plants. The Six Gene Expression 1 gene (Sge1) was amplified from the isolate and compared with that of other wilt‐causing F. oxysporum isolates. The Six1 gene had no intron and it encoded 278 amino acids, with a calculated molecular weight of 30.6 kDa, estimated isoelectric point 5.66 and theoretical extinction coefficient of 57,410 M−1 cm−1. Multiple sequence alignment of SIX1 amino acid sequences showed that the length of SIX1 varied among F. oxysporum formae speciales and different isolates of the same forma specialis. The predicted secondary structure of FPoSIX1 contained four α‐helices and 14 β‐sheets. Its predicted tertiary structure showed 92% query coverage and 67.37% identity with the template of the SIX1 protein of F. oxysporum f. sp. lycopersici PDB code: 7t69. The QMEAN score of this model was −2.53 and the model was validated using the Ramachandran Phi/Psi plot. Structure analysis of the effector protein will be helpful to identify its specific function and recognition by the host resistance protein. [ABSTRACT FROM AUTHOR]

Fusarium‐induced wilt significantly affects the cultivation and yield of pigeon peas. This warrants sustainable disease management while promoting plant growth. The present study investigated the biopotential of coinoculation of Streptomyces pseudogriseolus S‐9 and Rhizophagus irregularis for plant growth promotion and mitigation of the impact of Fusarium wilt on pigeon pea over three seasons at pot and field levels. Pigeon pea plants were subjected to Fusarium wilt stress and treated with different inoculation strategies, including single and combined applications of S. pseudogriseolus S‐9 and R. irregularis. Plant growth parameters and yields were assessed to evaluate the efficacy of the coinoculation. In the pot experiment, T‐6 treatment resulted in the longest root (62.56 ± 0.01 cm) and shoot (70.24 ± 0.01 cm) lengths compared to the application of commercial biofungicide T‐8 (Trichoderma). This treatment also significantly influenced the yield of potted plants. It resulted in the highest fresh root weight (62.27 ± 0.01 g), fresh shoot weight (70.24 ± 0.02 g), maximum root (55.25 ± 0.01 g) and shoot dry weights (52.25 ± 0.01 g). In the field experiment, pigeon pea plants treated with the bioinoculant also demonstrated a substantial increase (р ≤ 0.05) in total grain yield, the weight of 100 grains, and the number of filled grains compared to the control group in all experimental seasons. In vitro, antagonism assay of compatibility of mycorrhizae and bacteria showed good activity using powder formulation. Thus, the consortium application inspired the broad application of Streptomyces and Trichoderma as effective bioinoculants for wilt management and yield improvement in pigeon peas. [ABSTRACT FROM AUTHOR]

Panama disease, or Fusarium wilt, is a soil‐borne fungal disease of Musa spp. and the most severe threat to the banana industry and food security worldwide with no cure. Therefore, early detection of the pathogen Fusarium oxysporum f. sp. cubense (Foc) through reliable diagnostics will aid in implementing plant quarantine and containment measures to prevent the spread of this disease. In this study, a primary diagnostic procedure was developed based on the DNA sequences of the Foc‐TR4 SIX8a homologue, extracted from a piece of pseudostem tissue of M. acuminata Gros Michel Subgroup from Japan. A set of primers for the loop‐mediated isothermal amplification (LAMP) reaction was designed. The developed specific marker can be used to accurately, rapidly, and reliably detect early diagnosis of Foc‐TR4 infection without cutting down the unconfirmed young plant in banana fields. [ABSTRACT FROM AUTHOR]

Lentil (Lens culinaris) is an important pulse crop in India. Fusarium wilt caused by Fusarium oxysporum f. sp. lentis (Fol), is a major biotic constraint in lentil production. The present investigation was undertaken to evaluate the efficacy of combination products of fungicides and bio‐agents against Fol under in vitro and in vivo conditions. Fungicides were evaluated using the poisoned food technique, while the antagonistic activity of bio‐agents was studied using dual culture technique. Among seven combination products of fungicides, carbendazim 12% + mancozeb 63% was the most effective fungicide in restricting the colony diameter of the pathogen. In field conditions, the seed treatment with carbendazim 12% + mancozeb 63% at 2.5 g/kg seed performed best in both yield and seed quality parameters. Among the bio‐agents tested, Trichoderma asperullum gave the best results in suppressing pathogen growth under in vitro conditions. The seed treatment with the combination of T. asperullum + Pseudomonas fluorescens at 5 g/kg seed showed improvement in seed yield and seed quality parameters in the field. The present study has provided chemical and biological measures for the integrated management of lentil wilt. [ABSTRACT FROM AUTHOR]

Fusarium wilt, caused by Fusarium oxysporum f. sp. spinaciae, causes a significant challenge on vegetative spinach and seed production. Addressing this issue necessitates continuous research focused on innovative treatments and protocols through comprehensive bioassays. Recent studies have highlighted the potential of plant-based compounds in controlling fungal diseases. The present work aims to conduct a series of experiments, encompassing both in vitro and in planta assessments, to investigate the biocontrol capabilities of different essential oils (EOs) at various application rates, with the ultimate goal of reducing the incidence of Fusarium wilt in spinach. The inhibitory effect of four plant EOs (marjoram, thyme, oregano, and tea tree) was initially assessed on the spore germination of five unknown Fusarium strains. The outcomes revealed diverse sensitivities of Fusarium strains to EOs, with thyme exhibiting the broadest inhibition, followed by oregano at the highest concentration (6.66 μL/mL) in most strains. The tested compounds displayed a diverse range of median effective dose (ED50) values (0.69 to 7.53 µL/mL), with thyme and oregano consistently showing lower ED50 values. The direct and indirect inhibitory impact of these compounds on Fusarium mycelial growth ranged from -14% to -100%, wherein thyme and oregano consistently exhibiting the highest effectiveness. Following the results of five distinct inoculation approaches and molecular identification, the highly pathogenic strain F-17536 (F. oxysporum f.sp. spinaciae) was chosen for Fusarium wilt assessment in spinach seedlings, employing two promising EO candidates through seed and soil treatments. Our findings indicate that colonized grain (CG) proved to be a convenient and optimal inoculation method for consistent Fusarium wilt assessment under greenhouse conditions. Seed treatments with thyme and oregano EOs consistently resulted in significantly better disease reduction rates, approximately 54% and 36% respectively, compared to soil treatments (P > 0.05). Notably, thyme, applied at 6.66 µL/mL, exhibited a favorable emergence rate (ERI), exceeding seven, in both treatments, emphasizing its potential for effective disease control in spinach seedlings without inducing phytotoxic effects. This study successfully transitions from in vitro to in planta experiments, highlighting the potential incorporation of EOs into integrated disease management for Fusarium wilt in spinach production. [ABSTRACT FROM AUTHOR]

BACKGROUND: Fusarium infection has caused huge economic losses in many crops. The study aimed to compare the microbial community of suppressive and conducive soils and relate to the reduction of Fusarium wilt. RESULTS: High‐throughput sequencing and microbial network analysis were used to investigate the differences in the rhizosphere microbiota of the suppressive and conducive soils and to identify the beneficial keystone taxa. Plant pathogens were enriched in the conducive soil. Potential plant‐beneficial microorganisms and antagonistic microorganisms were enriched in the suppressive soil. More positive interactions and keystone taxa existed in the suppressive soil network. Thirty‐nine and 16 keystone taxa were identified in the suppressive and conducive soil networks, respectively. Sixteen fungal strains and 168 bacterial strains were isolated from suppressive soil, some of which exhibited plant growth‐promotion traits. Thirty‐nine bacterial strains and 10 fungal strains showed antagonistic activity against F. solani. Keystone taxa Bacillus and Trichoderma exhibited high antifungal activity. Lipopeptides produced by Bacillus sp. RB150 and chitinase from Trichoderma spp. inhibited the growth of F. solani. Microbial consortium I (Bacillus sp. RB150, Pseudomonas sp. RB70 and Trichoderma asperellum RF10) and II (Bacillus sp. RB196, Bacillus sp. RB150 and T. asperellum RF10) effectively controlled root rot disease, the spore number of F. solani was reduced by 94.2% and 83.3%. CONCLUSION: Rhizospheric microbiota of suppressive soil protects plants against F. solani infection. Antagonistic microorganisms in suppressive soil inhibit pathogen growth and infection. Microbial consortia consisted of keystone taxa well control root rot disease. These findings help control Fusarium wilt. © 2024 Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

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The economic repercussions of Fusarium wilt on global tomato crops underscore the disease's paramount importance. And by employing non-toxic, environmentally friendly ingredients that align with sustainable practices and emphasize biosafety considerations, green synthesis, an emerging field in nanobiotechnology, presents financial and ecological benefits surpassing customary chemical and physical approaches. The main objective of the present investigation is to formulate chitosan nanomolecules laden with Trichoderma harzianum extract and characterize them. Additionally, the study aimed to investigate the antifungal effectiveness of these chitosan nanomolecules towards Fusarium oxysporum f.sp. lycopersici. Employing the ionic gelation technique and tripolyphosphate (TPP), chitosan nanomolecules laden with T. harzianum extract were synthesized. Subsequent characterization involved UV-vis, FTIR, AFM, SEM, XRD, and EDX techniques to demonstrate the effectiveness of the biochemical transformation. In addition, the antifungal efficacy of bio-manufactured chitosan nanomolecules has been assessed against five strongly virulent isolates from F. oxysporum f.sp. lycopersici. The study revealed the highest inhibition rates of growth for all isolates to be 100% at a 1 mg/ml concentration of CNPs. In contrast, the minimal inhibitory level rates at 0.125 mg/ml of CNPs were 32.75, 32.83, 32.85, 36.92, and 41.17%, consecutively. This investigation's findings have revealed a recently discovered biological pathway to biosynthesize chitosan nanomolecules in an environmentally friendly way by using T. harzianum. The confirmed antifungal efficacy of the synthesized CNPs towards F. oxysporum suggests their potential as alternatives to or reducers of widespread fungicide use, applicable across various technical and agricultural domains. [ABSTRACT FROM AUTHOR]

The common bean (Phaseolus vulgaris L.) is a globally cultivated leguminous crop. Fusarium wilt (FW), caused by Fusarium oxysporum f. sp. phaseoli (Fop), is a significant disease leading to substantial yield loss in common beans. Disease-resistant cultivars are recommended to counteract this. The objective of this investigation was to identify single nucleotide polymorphism (SNP) markers associated with FW resistance and to pinpoint potential resistant common bean accessions within a core collection, utilizing a panel of 157 accessions through the Genome-wide association study (GWAS) approach with TASSEL 5 and GAPIT 3. Phenotypes for Fop race 1 and race 4 were matched with genotypic data from 4740 SNPs of BARCBean6K_3 Infinium Bea Chips. After ranking the 157-accession panel and revealing 21 Fusarium wilt-resistant accessions, the GWAS pinpointed 16 SNPs on chromosomes Pv04, Pv05, Pv07, Pv8, and Pv09 linked to Fop race 1 resistance, 23 SNPs on chromosomes Pv03, Pv04, Pv05, Pv07, Pv09, Pv10, and Pv11 associated with Fop race 4 resistance, and 7 SNPs on chromosomes Pv04 and Pv09 correlated with both Fop race 1 and race 4 resistances. Furthermore, within a 30 kb flanking region of these associated SNPs, a total of 17 candidate genes were identified. Some of these genes were annotated as classical disease resistance protein/enzymes, including NB-ARC domain proteins, Leucine-rich repeat protein kinase family proteins, zinc finger family proteins, P-loopcontaining nucleoside triphosphate hydrolase superfamily, etc. Genomic prediction (GP) accuracy for Fop race resistances ranged from 0.26 to 0.55. This study advanced common bean genetic enhancement through marker-assisted selection (MAS) and genomic selection (GS) strategies, paving the way for improved Fop resistance.

Among the biotic stresses, wilt disease severely affects tomato quality and productivity globally. The causal organism of this disease is Fusarium oxysporum f. sp. lycopersici (Fol), which is very well known and has a significant impact on the productivity of other crops as well. Efforts have been made to investigate the effect of plant growth-promoting bacteria (PGPB) on alleviating tomato wilt disease. Four PGPB strains, such as Pseudomonas aeruginosa BHUPSB01 (T1), Pseudomonas putida BHUPSB04 (T2), Paenibacillus polymyxa BHUPSB16 (T3), and Bacillus cereus IESDJP-V4 (T4), were used as inocula to treat Fol-challenged plants. The results revealed that PGPB treatments T1, T2, T3, and T4 were able to decrease the severity of Fusarium wilt in the tomato plants at different levels. Among the treatments, T3 displayed the strongest protective effect, with the lowest disease frequency, which was 15.25%. There were no significant differences observed in parameters such as fruit yield and relative water content in the PGPB-inoculated plants, although T3 and T4 showed minimal electrolyte leakage. Significant changes in chlorophyll fluorescence were also recorded. A lower level of H2O2 and malondialdehyde (MDA) was observed in the T3 and T4 treatments. In addition, proline accumulation was highest in the T3-treated plants. Antioxidative enzyme activities, such as catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD), significantly increased in the PGPB-treated plants. Furthermore, the highest phenylalanine ammonia-lyase (PAL) and polyphenol oxidase (PPO) activity was reported in the T3 and T4 plants, respectively. The PGPB-treated plants showed elevated expression of the PAL, PPO, PR3, PR2, SOD, CAT, and PO genes. This study’s results reveal that PGPB strains can be utilized as biocontrol agents (BCAs) to enhance tomato resistance against Fusarium wilt.

Wilt disease in chilli caused by Fusarium oxysporum is a serious and global issue in chilli production, necessitating greater knowledge of plant defense systems for overall disease protection and management. In an eco-friendly integrated agricultural protection system, the introduction of chemical elicitors like jasmonic acid (JA) and salicylic acid (SA) represents an attractive new prospect means of controlling bacterial and fungal diseases. In the present study effectiveness of JA and SA as elicitors in disease progression was investigated in Capsicum annuum L. c.v., Kashmiri longum (chilli) plants against Fusarium wilt caused by pathogen Fusarium oxysporum. The experiment had eight sets of plants as control (untreated, uninfected), infected (untreated, infected), and one set of plants for each concentration of JA treatment (50 µM, 100 µM, 150 µM) + pathogen, and SA treatment (50 µM, 100 µM, 150 µM) + pathogen. Pre-treatment of JA and SA elicitors to F.oxysorum-infected chilli plants showed significant decrease in disease severity index as well as in disease symptoms compared to pathogen-infected and control plants. There was a substantial increase in the activities of antioxidant and defense enzymes in elicitor treated samples post pathogen inoculation. Exogenous application of JA and SA enhanced the growth of morphological parameters (shoot length, root length, number of leaves, leaf area, and plant height). Moreover, the statistical analysis using two-way ANOVA and Tukey test revealed significant differences between treatments, and days post infection in comparison to control. The study found that each elicitor treatment significantly differs in the type of enzymes activated and their amounts post-inoculation, indicating distinct host reaction patterns. Overall, the current study highlights the induced defense resistance role of JA and SA in chilli plants in response to F.oxysporum and JA was found most effective concerning disease protection followed by SA.