477 results on '"G. Krishnamoorthy"'
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2. Intracellular oxygen: Similar results from two methods of measurement using phosphorescent nanoparticles
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David Lloyd, Catrin F. Williams, K. Vijayalakshmi, M. Kombrabail, Nick White, Anthony J. Hayes, Miguel A. Aon, and G. Krishnamoorthy
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Time-resolved phosphorescence ,intracellular O2 ,two-photon excitation ,pinhole shifting ,Technology ,Optics. Light ,QC350-467 - Abstract
The ability to resolve the spatio-temporal complexity of intracellular O2 distribution is the "Holy Grail" of cellular physiology. In an effort to obtain a minimally invasive approach to the mapping of intracellular O2 tensions, two methods of phosphorescent lifetime imaging microscopy were compared in the current study and gave similar results. These were two-photon confocal laser scanning microscopy with pinhole shifting, and picosecond time-resolved epi-phosphorescence microscopy using a single 0.5 μm focused spot. Both methods utilized Ru coordination complex embedded nanoparticles (45 nm diameter) as the phosphorescent probe, excited using pulsed outputs of a titanium–sapphire Tsunami lasers (710–1050 nm).
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- 2014
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3. Unlocking the Antimicrobial, Antifungal, and Anticancer Power of Chitosan-Stabilized Silver Nanoparticles
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C G, Ann Maria, Agnihotri, Ananya S, Fatima, Tazeen, Hameed, Saif, G, Krishnamoorthy, and M, Nidhin
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- 2023
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4. Synchrosqueezing Transform Based Powerline Interference Reduction in ECG Recording.
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M. Suresh Kumar, G. Krishnamoorthy, and D. Vaithiyanathan 0001
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- 2020
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5. Approaching xeno-free cultivation of pulmonary pathogens in vitro
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L Pfeiffer, C Weißfuß, U Behrendt, S Wienhold, B Gutbier, G Krishnamoorthy, M Witzenrath, G Nouailles, C Goekeri, and P Pennitz
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- 2023
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6. Enhancing the empiric antibiotic selection by introducing an antibiogram toolkit in a tertiary care hospital in Southern India – A prospective study
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Sadagoban G. Krishnamoorthy, Vyshak Raj, Balasubramaniam Viswanathan, Ganga Priyadharshini Dhanasekaran, Dhivyaprasath Palaniappan, and Swathi Swaroopa Borra
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Tertiary Care Centers ,Pharmacology ,Antimicrobial Stewardship ,Escherichia coli ,Humans ,Pharmacology (medical) ,Microbial Sensitivity Tests ,Prospective Studies ,Anti-Bacterial Agents - Abstract
Antibiograms gives an overview of the cumulative susceptibility of formal antibiotics to bacterial isolates, which reflects the portion of each bacterium susceptible to a given antibiotic formulation by using antimicrobial susceptibility testing. The objective of this study is to gather and analyse data from drug utilization evaluation (DUE) studies and antimicrobial susceptibility tests in order to create an antibiogram toolkit that will help clinicians to select appropriate antimicrobial agents for initial empirical antibiotic therapy at point of care settings and avoid irrational use of antibiotics.A prospective interventional study was conducted at tertiary care hospital, biological samples of infectious patients were collected from various wards as per ClinicalLaboratory Standards Institute CLSI M39-A4 guidelines. Antimicrobial susceptibility results were analysed using WHONET software. Antibiotic stewardship committee was formed and involved in monitoring the usage of antibiotics, measuring outcomes, collecting feedback and finding the scope for improving the application of antibiogram toolkit in the hospital. Antibiotic usage tracking method was followed to know the level of adherence to the prescribing guidelines by the health care professionals.A total of 157 samples were obtained from various wards of the hospital. In that, Escherichia coli, Staphylococcus aureus and Klebsiella Pneumoniae were isolated in significant numbers. Antibacterial susceptibility results were collected, an initial antibiogram was developed for 18 antibacterial agents with respect to 3 gram-positive (+) and 1 gram-negative (-) organisms. 90% of prescribers mentioned that the antibiogram was useful, and 76% of them adhered to the guidelines. 26% were not adhered due to the patient-related factors.In our study, we have used qualitative and quantitative evaluation of drug utilization (DUE) reports to understand the existing prescribing pattern of antibiotics and setting target organisms and antibacterials to develop the hospital antibiogram. Combining DUE studies and antibiogram development was helpful in implementing effective antibiotic policies for the hospital. Further, this study pattern will be continued on a yearly basis and focused on developing cumulative antibiograms to understand the changes in resistance pattern of antimicrobials and utilization of antibiotics in the hospital.
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- 2021
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7. FRAP and FRET Investigation of α-Synuclein Fibrillization via Liquid-Liquid Phase Separation In Vitro and in HeLa Cells
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Soumik Ray, Nitu Singh, Komal Patel, G. Krishnamoorthy, and Samir K. Maji
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- 2022
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8. Increased susceptibility to Pseudomonas aeruginosa pneumonia in overventilated lungs is caused by airspace acidification
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M Felten, C Tan, S Ferencik, J Li, E Letsiu, J Lienau, H C Müller-Redetzky, T C Firsching, A D Gruber, G Krishnamoorthy, Z Qi, W Kübler, and M Witzenrath
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- 2022
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9. exercise and cognition
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Singh, Ashley, G Krishnamoorthy, Nishalini, and Moreau, David
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- 2022
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10. Mapping Distinct Sequences of Structure Formation Differentiating Multiple Folding Pathways of a Small Protein
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Sandhya Bhatia, Jayant B. Udgaonkar, and G. Krishnamoorthy
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Protein Folding ,Structure formation ,Protein molecules ,biology ,Chemistry ,Sequence (biology) ,General Chemistry ,Computational biology ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Folding (chemistry) ,Kinetics ,Magnoliopsida ,Colloid and Surface Chemistry ,Förster resonance energy transfer ,Order (biology) ,Phenomenological model ,Fluorescence Resonance Energy Transfer ,biology.protein ,Monellin ,Plant Proteins - Abstract
To determine experimentally how the multiple folding pathways of a protein differ, in the order in which the structural parts are assembled, has been a long-standing challenge. To resolve whether structure formation during folding can progress in multiple ways, the complex folding landscape of monellin has been characterized, structurally and temporally, using the multisite time-resolved FRET methodology. After an initial heterogeneous polypeptide chain collapse, structure formation proceeds on parallel pathways. Kinetic analysis of the population evolution data across various protein segments provides a clear structural distinction between the parallel pathways. The analysis leads to a phenomenological model that describes how and when discrete segments acquire structure independently of each other in different subensembles of protein molecules. When averaged over all molecules, structure formation is seen to progress as α-helix formation, followed by core consolidation, then β-sheet formation, and last end-to-end distance compaction. Parts of the protein that are closer in the primary sequence acquire structure before parts separated by longer sequence.
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- 2021
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11. Phenol sensing in nature is modulated via a conformational switch governed by dynamic allostery
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Jayanti Singh, Mohammad Sahil, Shamayeeta Ray, Criss Dcosta, Santosh Panjikar, G. Krishnamoorthy, Jagannath Mondal, and Ruchi Anand
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Adenosine Triphosphatases ,Allosteric Regulation ,Phenol ,Protein Domains ,Bacterial Proteins ,Trans-Activators ,Cell Biology ,Biosensing Techniques ,Molecular Biology ,Biochemistry ,Protein Binding - Abstract
The NtrC family of proteins senses external stimuli and accordingly stimulates stress and virulence pathways via activation of associated σ
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- 2022
12. Phenol Sensing in Nature Modulated via a Conformational Switch Governed by Dynamic Allostery
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Jayanti Singh, Mohammad Sahil, Shamayeeta Ray, Criss Dcosta, Santosh Panjikar, G. Krishnamoorthy, Jagannath Mondal, and Ruchi Anand
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NtrC family of proteins sense external stimuli and accordingly stimulate stress and virulence pathways via activation of associated σ54-dependent RNA polymerases. Here, we establish that MopR, an NtrC protein, harbors a dynamic bi-directional electrostatic network that connects the phenol pocket to two distal regions, namely the “G-hinge” and the “allo-steric-linker”. While G-hinge influences the entry of phenol, the allosteric-linker passes the signal to the downstream ATPase domain. Phenol binding induces a rewiring of the electrostatic connections by eliciting dynamic allostery, and it was demonstrated that perturbation of the core relay residues results in a complete loss of ATPase stimulation. A mutation of the G-hinge,∼20Å from the phenol pocket, demonstrated altered flexibility by shifting the pattern of conformational states accessed, leading to a protein with 7-fold enhanced phenol binding ability and enhanced transcriptional activation. A global analysis illustrates that dynamic allostery-driven conserved community networks are universal and evolutionarily conserved across species.
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- 2022
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13. α-Synuclein aggregation nucleates through liquid–liquid phase separation
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Sandhya Bhatia, Amrendra K. Singh, Jaladhar Mahato, Soumik Ray, Ranjith Padinhateeri, Samir K. Maji, Laxmikant G. Gadhe, Siddhartha Maiti, Ambuja Navalkar, Roland Riek, Debdeep Chatterjee, Rajlaxmi Panigrahi, G. Krishnamoorthy, Nitu Singh, Sushil Kumar Pandey, Rakesh Kumar, Arindrajit Chowdhury, Komal Patel, Surabhi Mehra, Juan Gerez, Debalina Datta, and Ashutosh Kumar
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Amyloid ,010405 organic chemistry ,Chemistry ,animal diseases ,General Chemical Engineering ,Mutagenesis ,General Chemistry ,010402 general chemistry ,01 natural sciences ,In vitro ,nervous system diseases ,0104 chemical sciences ,Aggresome ,nervous system ,Microtubule ,Biophysics ,Liquid liquid ,heterocyclic compounds ,α synuclein ,Cellular model - Abstract
α-Synuclein (α-Syn) aggregation and amyloid formation is directly linked with Parkinson's disease pathogenesis. However, the early events involved in this process remain unclear. Here, using the in vitro reconstitution and cellular model, we show that liquid-liquid phase separation of α-Syn precedes its aggregation. In particular, in vitro generated α-Syn liquid-like droplets eventually undergo a liquid-to-solid transition and form an amyloid hydrogel that contains oligomers and fibrillar species. Factors known to aggravate α-Syn aggregation, such as low pH, phosphomimetic substitution and familial Parkinson's disease mutations, also promote α-Syn liquid-liquid phase separation and its subsequent maturation. We further demonstrate α-Syn liquid-droplet formation in cells. These cellular α-Syn droplets eventually transform into perinuclear aggresomes, the process regulated by microtubules. This work provides detailed insights into the phase-separation behaviour of natively unstructured α-Syn and its conversion to a disease-associated aggregated state, which is highly relevant in Parkinson's disease pathogenesis.
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- 2020
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14. Synthesis, spectral characterization and anticancer activity of novel pyrimidine derivatives
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R. Senthamarai, S. Shakila Banu, G. Krishnamoorthy, and M S Jaabir
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A549 cell ,chemistry.chemical_compound ,chemistry ,Pyrimidine ,Bromide ,Proton NMR ,Pharmacology (medical) ,MTT assay ,Benzamide ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Combinatorial chemistry ,In vitro ,Pyrrole - Abstract
The main objective of this work was to synthesize, characterize and evaluate the anticancer activity of novel pyrimidine derivatives. The present investigation was undertaken to synthesize pyrimidine derivatives containing pyrrole nucleus The compounds 4-[aminomethyl]-N-(4-methyl-3-{[4-(1H-pyrrol-2-yl) pyrimidin-2-yl]amino}phenyl) benzamide (13f) and 4-[(propylamino) methyl]-N-(4-methyl-3-{ [4-(1H- pyrrol-2-yl) pyrimidin-2 -yl] amino} phenyl) benzamide (13h) was prepared by conventional method. All the synthesized compounds were characterized by spectral (IR, NMR and MS) methods. The synthesized compounds were evaluated for their in vitro anticancer activity against non-small cell lung cancer A549 cell line by using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. All the synthesized compounds showed characteristic peaks in FTIR, 1H NMR and Mass spectral analysis. In vitro anticancer activity revealed that 13f and 13h showed more potent anticancer activity as compared to the standard drug sunitinib. We designed and synthesized novel pyrimidine derivatives by conventional method. The anticancer activity determined by MTT assay showed compound 13f and 13h can be developed as a potential anticancer agent.
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- 2020
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15. Nanoparticle and surfactant controlled switching between proton transfer and charge transfer reaction coordinates
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Minati Das, Mongoli Brahma, Sophy A. Shimray, Francis A. S. Chipem, and G. Krishnamoorthy
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Surface-Active Agents ,Silver ,General Physics and Astronomy ,Metal Nanoparticles ,Sodium Dodecyl Sulfate ,Physical and Theoretical Chemistry ,Protons - Abstract
The reaction coordinates of a molecular photo-switch 2-(4′-diethylamino-2′-hydroxyphenyl)-1H-imidazo-[4,5-b]pyridine (DHP) were tuned with nanoparticles and surfactants.
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- 2022
16. Prototropic Tuning of Proton and Charge Transfer Emission of 2-(4′-Amino-2′-hydroxyphenyl)-1H-imidazo-[4,5-c]pyridine
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G Krishnamoorthy, Arup Das Kanungo, and Santosh Kumar Behera
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- 2022
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17. Modifying the proton transfer of 3,5-bis(2-hydroxyphenyl)-1H-1,2,4-triazole by water, confinement and confined water
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null Ila, Mongoli Brahma, Sanjeev Ranjan, Pravesh Tripathi, and G. Krishnamoorthy
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Water ,Hydrogen Bonding ,Protons ,Triazoles ,Instrumentation ,Spectroscopy ,Atomic and Molecular Physics, and Optics ,Analytical Chemistry - Abstract
The effect of water, confinement and confined water on the proton transfer of 3,5-bis(2-hydroxyphenyl)-1H-1,2,4-triazole (bis-HPTA) was investigated. Water alters the proton transfer process. At higher pH, an anion is formed in water and it undergoes intermolecular proton transfer and forms a keto tautomer. Confinement of molecule in β-cyclodextrin affects the intramolecular proton transfer. It also prevents the intermolecular proton transfer of the anionic form. In reverse micelle, the molecule resides in the interfacial region and interacts with bound water. The intermolecular hydrogen bond of the surfactants opens the intramolecular hydrogen bond in the weaker β-ring of bis-HPTA. It led to single tautomer emission from bis-HPTA. An increase in water amount enhances the relative amount of trans-enol, but predominantly tautomer emission is observed.
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- 2021
18. Spatiotemporal solidification of α-synuclein inside the liquid droplets
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Soumik Ray, Samir K. Maji, G. Krishnamoorthy, Manisha Poudyal, Jaladhar Mahato, Ranjith Padinhateeri, Arindam Chowdhury, Komal Patel, Debdeep Chatterjee, Ajay Singh Sawner, Sangram Kadam, Semanti Mukherjee, and Rakesh Krishnan
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Fusion ,Chemistry ,Homogeneous ,Biophysics ,α synuclein ,Protein aggregation ,Protein secondary structure - Abstract
Liquid-liquid phase separation (LLPS) and subsequent liquid-to-solid transition is implicated in membraneless organelles formation as well as disease associated protein aggregation. However, how liquid-to-solid transition is initiated inside a liquid droplet remains unclear. Here, using studies at single droplet resolution, we show that liquid-to-solid transition of α-synuclein (α-Syn) liquid droplets is associated with significant changes in the local microenvironment as well as secondary structure of the protein, which is prominently observed at the center of the liquid droplets. With the ageing of liquid droplets, the “structured” core at the center gradually expands and propagates over entire droplets. Further, during droplet fusion, smaller, homogeneous droplets progressively dissolve and supply proteins to the larger, heterogeneous droplets containing solid-like core at their center. The present study will significantly help to understand the physical mechanism of LLPS and liquid-to-solid transition in biological compartmentalization as well as in protein aggregation associated with human neurodegenerative disorders.Abstract Figure
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- 2021
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19. Host-guest interaction aided Zinc carry and delivery by ESIPT active 2-(2′-hydroxyphenyl)benzoxazole
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Minati, Das, Mongoli, Brahma, and G, Krishnamoorthy
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Benzoxazoles ,Zinc ,Water ,Dimethyl Sulfoxide ,Protons ,Instrumentation ,Spectroscopy ,Atomic and Molecular Physics, and Optics ,Fluorescent Dyes ,Analytical Chemistry - Abstract
The effect of solvents and supramolecular hosts on the binding of metal ion with an excited state intramolecular proton transfer (ESIPT) active fluorophore 2-(2'-hydroxyphenyl)benzoxazole (HPBO) are investigated to scrutinize a possible metal ion carry and delivery system. The fluorophore forms strong fluorescent complex with Zn
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- 2022
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20. Use of 6‐Methylisoxanthopterin, a Fluorescent Guanine Analog, to Probe Fob1‐Mediated Dynamics at the Stalling Fork Barrier DNA Sequences
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Jessy Mariam, G. Krishnamoorthy, and Ruchi Anand
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DNA Replication ,Saccharomyces cerevisiae Proteins ,Guanine analog ,Guanine ,Saccharomyces cerevisiae ,010402 general chemistry ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Escherichia coli ,Holliday junction ,Fluorescent Dyes ,DNA, Cruciform ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,DNA ,General Chemistry ,Fluorescence ,Xanthopterin ,0104 chemical sciences ,DNA-Binding Proteins ,Terminator (genetics) ,Biophysics ,Nucleic acid ,Recombination ,Protein Binding - Abstract
Fluorescent nucleic acid base mimics serve as excellent site-specific and real-time reporters of the local and global dynamics. In this work, using the fluorescent guanine mimic 6-methylisoxanthopterin (6-MI), we unravel the differential dynamics of replication fork barrier/terminator sequences (RFB1 and RFB3) mediated by fork blocking protein (Fob1). By strategic and site-specific incorporation of this probe, we show that 6-MI is able to capture the changes in global dynamics exhibited by Fob1 and aids in distinguishing between varied architectural forms like double-stranded DNA versus Holliday junctions (HJs). This is important as these barriers are hotspots for recombination. Fluorescence lifetime and anisotropy decay studies further revealed that Fob1 strongly dampens the dynamics in double-stranded RFB1, and the sequence inherently possesses lesser flexibility in comparison to RFB3. We show that 6-MI can probe the differential oligomeric status of Fob1 in response to various architectures, that is, double-stranded versus HJs. This work highlights the unique advantages of 6-MI as a probe when incorporated in nucleic acid frameworks.
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- 2019
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21. Observation of Continuous Contraction and a Metastable Misfolded State during the Collapse and Folding of a Small Protein
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Deepak Dhar, G. Krishnamoorthy, Jayant B. Udgaonkar, and Sandhya Bhatia
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Protein Denaturation ,Protein Folding ,Activation energy ,Molecular Dynamics Simulation ,03 medical and health sciences ,0302 clinical medicine ,Structural Biology ,Metastability ,Phenomenological model ,Native state ,Molecular Biology ,Plant Proteins ,Probability ,030304 developmental biology ,Physics ,Quantitative Biology::Biomolecules ,0303 health sciences ,Protein Stability ,Time evolution ,Markov Chains ,Molten globule ,Kinetics ,Light intensity ,Förster resonance energy transfer ,Chemical physics ,Peptides ,030217 neurology & neurosurgery - Abstract
To obtain proper insight into how structure develops during a protein folding reaction, it is necessary to understand the nature and mechanism of the polypeptide chain collapse reaction, which marks the initiation of folding. Here, the time-resolved fluorescence resonance energy transfer technique, in which the decay of the fluorescence light intensity with time is used to determine the time evolution of the distribution of intra-molecular distances, has been utilized to study the folding of the small protein, monellin. It is seen that when folding begins, about one-third of the protein molecules collapse into a molten globule state (IMG), from which they relax by continuous further contraction to transit to the native state. The larger fraction gets trapped into a metastable misfolded state. Exit from this metastable state occurs via collapse to the lower free energy IMG state. This exit is slow, on a time scale of seconds, because of activation energy barriers. The trapped misfolded molecules as well as the IMG molecules contract continuously and slowly as structure develops. A phenomenological model of Markovian evolution of the polymer chain undergoing folding, incorporating these features, has been developed, which fits well the experimentally observed time evolution of distance distributions. The observation that the "wrong turn" to the misfolded state has not been eliminated by evolution belies the common belief that the folding of functional protein sequences is very different from that of a random heteropolymer, and the former have been selected by evolution to fold quickly.
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- 2019
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22. Resolving Site-Specific Heterogeneity of the Unfolded State under Folding Conditions
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Jayant B. Udgaonkar, Sandhya Bhatia, and G. Krishnamoorthy
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0303 health sciences ,Circular dichroism ,biology ,Chemistry ,Polypeptide chain ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Folding (chemistry) ,03 medical and health sciences ,Förster resonance energy transfer ,biology.protein ,Biophysics ,General Materials Science ,Physical and Theoretical Chemistry ,Monellin ,030304 developmental biology - Abstract
Understanding the properties of the unfolded state under folding conditions is of fundamental importance for gaining mechanistic insight into folding as well as misfolding reactions. Toward achieving this objective, the folding reaction of a small protein, monellin, has been resolved structurally and temporally, with the use of the multisite time-resolved FRET methodology. The present study establishes that the initial polypeptide chain collapse is not only heterogeneous but also structurally asymmetric and nonuniform. The population-averaged size for the segments spanning parts of the β-sheet decreases much more than that for the α-helix. Multisite measurements enabled specific and nonspecific components of the initial chain collapse to be discerned. The expanded and compact intermediate subensembles have the properties of a nonspecifically collapsed (hence, random-coil-like) and specifically collapsed (hence, globular) polymer, respectively. During subsequent folding, both the subensembles underwent contraction to varying extents at the four monitored segments, which was close to gradual in nature. The expanded intermediate subensemble exhibited an additional very slow contraction, suggestive of the presence of non-native interactions that result in a higher effective viscosity slowing down intrachain motions under folding conditions.
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- 2021
23. Intramolecular Distance Distribution Reveals Mechanisms in Protein Folding and Dynamics
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G. Krishnamoorthy
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Distribution (number theory) ,Chemistry ,Dynamics (mechanics) ,General Physics and Astronomy ,Maximum entropy method ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Lifetime distribution ,01 natural sciences ,Structural heterogeneity ,0104 chemical sciences ,Chemical physics ,Intramolecular force ,Protein folding ,0210 nano-technology - Abstract
Flexibility and dynamics in polypeptides and proteins give rise to conformational and structural heterogeneity. Quantification of the level of heterogeneity is essential for providing deeper understanding of molecular mechanisms in protein folding. Fluorescence lifetime distribution generated by the maximum entropy method (MEM) provides an unbiased estimate of intramolecular distance distribution. This article discusses several examples where MEM-generated lifetime distribution brings out site-specific conformational and structural heterogeneity in proteins. Use of the information on intamolecular distance distribution in revealing molecular mechanisms of protein folding is also discussed.
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- 2018
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24. Site-specific time-resolved FRET reveals local variations in the unfolding mechanism in an apparently two-state protein unfolding transition
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Sandhya Bhatia, G. Krishnamoorthy, and Jayant B. Udgaonkar
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0301 basic medicine ,Protein Denaturation ,Protein Folding ,Circular dichroism ,Equilibrium unfolding ,General Physics and Astronomy ,Cooperativity ,Menispermaceae ,Protein Structure, Secondary ,03 medical and health sciences ,Protein structure ,Fluorescence Resonance Energy Transfer ,Physical and Theoretical Chemistry ,Guanidine ,Plant Proteins ,Protein Unfolding ,030102 biochemistry & molecular biology ,biology ,Chemistry ,Circular Dichroism ,Recombinant Proteins ,Crystallography ,Förster resonance energy transfer ,Chemical physics ,Helix ,Mutagenesis, Site-Directed ,biology.protein ,Protein folding ,Monellin - Abstract
Protein folding/unfolding transitions between the native (N) and unfolded (U) states are usually describable as two-state, only because of the dominant presence of the N and/or U states, because of which high energy intermediates remain undetected. Delineation of the cooperativity underlying these transitions, and characterization of high energy intermediates that are populated sparsely, have been difficult challenges, especially under equilibrium conditions, and require the use of a sensitive probe that reports on both the structures and population distributions of the partially unfolded intermediates. In this study, the use of multisite time-resolved FRET to monitor structural change in five specific segments of the small protein monellin, has brought out local deviations from two-state behavior during unfolding. It is shown that in some segments of the protein structure, denaturant-induced unfolding proceeds first by gradual expansion of the N state, then by an all-or-none transition from the N state ensemble to the U state ensemble, followed finally by expansion of the U state. Segments encompassing the sole helix appear, however, to unfold completely through a gradual transition from the N to U states. Finally, it is shown that equilibrium unfolding of monellin is not only heterogeneous, but that the degree of non-cooperativity differs between the sole α-helix and different parts of the β-sheet.
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- 2018
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25. A sensitive and selective sensor for picric acid detection with a fluorescence switching response
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K. Anki Reddy, G. Krishnamoorthy, Ammathnadu S. Achalkumar, Ravindra Kumar Gupta, Balaram Pradhan, Subrata Nath, and Suraj Kumar Pathak
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Fluorophore ,010405 organic chemistry ,Picrate ,Protonation ,Picric acid ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Fluorescence ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,Tetrazole ,Titration ,Naked eye - Abstract
A low molecular weight organogelator containing 3,5-substituted-1,3,4-oxadiazole and tetrazole units was synthesized and characterized. This compound is only soluble in DMSO and forms a stable gel. The solution and gel exhibit a blue light emission. The gel was characterized by atomic force microscopy, field-emission scanning electron microscopy, 1H NMR and fluorescence measurements. The gel to solution interconversion was reversible for many cycles of heating and cooling. The compound in solution exhibited a high selectivity for the detection of picric acid, a common explosive and water pollutant. Fluorimetric titration studies with nitro explosive compounds revealed that the emission of the compound was red shifted in response to the addition of picric acid, and exhibited a shifting of fluorescence from blue to green. Theoretical and experimental studies revealed that the sensing is due to the complexation of the picrate anion with the protonated fluorophore. The shifting of emission in response to picric acid in the visible region is ideal for the naked eye detection of explosives and therefore it is promising in comparison to the detection methods based on fluorescence quenching.
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- 2018
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26. A detailed insight on fabricated porous chitosan in eliminating synthetic anionic dyes from single and multi-adsorptive systems with related studies
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E. Suganya, Selvaraju Narayanasamy, Chandi Patra, Senthilkumar Sivaprakasam, and G. Krishnamoorthy
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Environmental Engineering ,Sorbent ,Health, Toxicology and Mutagenesis ,0208 environmental biotechnology ,Infrared spectroscopy ,Bromophenol blue ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,symbols.namesake ,chemistry.chemical_compound ,Adsorption ,Spectroscopy, Fourier Transform Infrared ,Monolayer ,Environmental Chemistry ,Coloring Agents ,0105 earth and related environmental sciences ,Chitosan ,Chemistry ,Public Health, Environmental and Occupational Health ,Langmuir adsorption model ,General Medicine ,General Chemistry ,Hydrogen-Ion Concentration ,Pollution ,020801 environmental engineering ,Congo red ,Kinetics ,Chemisorption ,symbols ,Thermodynamics ,Porosity ,Water Pollutants, Chemical ,Nuclear chemistry - Abstract
Chitosan was fabricated via gelation method using CaBr2.xH2O/methanol solution and was studied as a potential adsorbent (MCh) in adsorbing anionic synthetic dyes like Bromophenol blue (BB), Direct blue 6 (DB) and Congo red (CR) from single (one dye species at a time) and multi (having two dyes; binary and all three dyes; tertiary) adsorptive systems. Physico-chemical modifications of MCh surface prior and post modification and dye adsorption were evaluated using scanning electron microscopy, Energy-dispersive X-ray spectroscopy, powder X-ray diffraction analysis, surface area analysis and Fourier-transformed infrared spectroscopy. Influential parameters influencing the adsorption process viz. initial pH of dye solution, MCh dosage, adsorption temperature and initial concentration of dye species were optimised. Adsorptive studies involving single adsorptive setups verified formation of sorbate's (dye species) monolayer over the sorbent's (MCh) surface via chemisorption; as established by Langmuir isotherm and pseudo-second order kinetics model analysis. Theoretical maximum adsorption capacities of MCh for BB, DB and CR was found to be 81.301 mg/g, 163.934 mg/g and 75.758 mg/g, respectively. Meanwhile, for all multi-adsorptive systems, competitive Langmuir isotherm model verified antagonistic behaviour of an individual dye over other dye adsorption over MCh surface in their respective adsorptive systems. Thermodynamics of the sorbate-sorbent interaction was exothermic, spontaneous, with elevated degree of disorderedness; concluding the interaction as thermodynamically favourable. Co-existing metal cations and anionic salts had minimal effect on MCh's adsorption efficiency. Phytotoxicity assay via germination of Vigna mungo seeds verified the efficacy of the adsorbent in eliminating the dye species from single and multi-adsorptive systems.
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- 2021
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27. The origin of the longer wavelength emission in 2-(4-fluorophenylamino)-5-(2,4-dihydroxybenzeno)-1,3,4-thiadiazole and its analogue 2-phenylamino-5-(2-hydroxybenzono)-1,3,4-thiadiazole† ‡
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Reshmi Dani, Ila, Surya Pratap, Verma, and G, Krishnamoorthy
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In aqueous solution, 2-(4-fluorophenylamino)-5-(2,4-dihydroxybenzeno)-1,3,4-thiadiazole (FABT) was found to emit dual emission and the longer wavelength emission was assigned to the combination of aggregation and conformational change. In a number of molecules that possess an intramolecular hydrogen bond between the proton donor and the acceptor, the longer wavelength emission is often observed due to the emission from the tautomer formed by excited state intramolecular proton transfer (ESIPT). Therefore, an analogue of FABT, 2-phenylamino-5-(2-hydroxybenzono)-1,3,4-thiadiazole (PHBT), was synthesized to determine the origin of the longer wavelength emission. The luminescence of PHBT and its methoxy derivatives was studied and compared with that of FABT. Theoretical calculations were also performed on both FABT and PHBT. Based on the experimental and theoretical investigations, the nonexistence of the keto tautomer in the ground state and the origin of the longer wavelength emission are divulged.
- Published
- 2019
28. METHOD DEVELOPMENT AND STATISTICAL VALIDATION OF VALSARTAN IN BULK AND TABLET DOSAGE FORM BY UV SPECTROPHOTOMETRIC METHOD
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G. Krishnamoorthy*, N Siva Subramanian
- Subjects
Valsartan, UV-Spectroscopy, Method Development, Validation - Abstract
A simple, accurate, specific and precise UV Spectrophotometric method has been developed for estimation of Valsartan in bulk and pharmaceutical formulation. The λ max of Valsartan in ethanol was found to be 249 nm. The drug exhibited the linearity in the concentration range of 10-60μg/mL with correlation coefficient of 0.999. the % recovery of the drug for the proposed was found to be between 99.82 to 100.48%. The % RSD values found to be less than 2. No interference was observed in the presence of common pharmaceutical excipients. The method was validated as per ICH guidelines. The developed method was successfully employed for the estimation of Valsartan in pharmaceutical dosage form. The developed method was cost effective with less consumption of solvents and can be used for routine analysis.
- Published
- 2019
- Full Text
- View/download PDF
29. α-Synuclein Spontaneously Adopts Stable and Reversible α-Helical Structure in Water-Less Environment
- Author
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Samir K. Maji, Surabhi Mehra, Anasua Mukhopadhyay, Raj Kumar, Kamendra P. Sharma, and G. Krishnamoorthy
- Subjects
chemistry.chemical_classification ,Circular dichroism ,Aqueous solution ,02 engineering and technology ,Polyethylene glycol ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,chemistry.chemical_compound ,Crystallography ,Anionic addition polymerization ,chemistry ,Pulmonary surfactant ,Diamine ,Molecule ,Physical and Theoretical Chemistry ,0210 nano-technology - Abstract
A highly stable, spontaneous, and reversible α-helical-structure formation in recombinant and chemically modified α-synuclein protein is demonstrated for the first time in a water-less (1.5 % w/w H2 O) polymer surfactant environment. Using a combination of circular dichroism and ATR-FTIR spectroscopy, we show that whilst native α-synuclein in aqueous solution shows a predominant unordered conformation (≈64 %), mixing with polyethylene glycol based anionic polymer surfactant (PS) and removing water reveals a 25 % unordered, 25 % α-helical, and 27 % β-sheet structure. Interestingly, bioconjugation of native α-synuclein with a diamine molecule, to increase the positive charge on the protein chain, and subsequent electrostatic coupling with the PS forms a conjugate with a retained unordered structure. Removal of water from this system provides a highly stable α-helical (≈74 %) water-less liquid system. Surprisingly, the α-helical-to-unordered state transition is completely reversible and is achieved at ≈25-30 w/w% of water in the system. Moreover, the α-helix shows an extraordinary temporal stability (>6 months) in a waterless environment.
- Published
- 2019
30. α-Synuclein aggregation nucleates through liquid-liquid phase separation
- Author
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Soumik, Ray, Nitu, Singh, Rakesh, Kumar, Komal, Patel, Satyaprakash, Pandey, Debalina, Datta, Jaladhar, Mahato, Rajlaxmi, Panigrahi, Ambuja, Navalkar, Surabhi, Mehra, Laxmikant, Gadhe, Debdeep, Chatterjee, Ajay Singh, Sawner, Siddhartha, Maiti, Sandhya, Bhatia, Juan Atilio, Gerez, Arindam, Chowdhury, Ashutosh, Kumar, Ranjith, Padinhateeri, Roland, Riek, G, Krishnamoorthy, and Samir K, Maji
- Subjects
Protein Aggregates ,Microscopy, Confocal ,Mutagenesis, Site-Directed ,alpha-Synuclein ,Humans ,Parkinson Disease ,Hydrogen-Ion Concentration ,Phase Transition ,Recombinant Proteins ,HeLa Cells ,Polyethylene Glycols - Abstract
α-Synuclein (α-Syn) aggregation and amyloid formation is directly linked with Parkinson's disease pathogenesis. However, the early events involved in this process remain unclear. Here, using the in vitro reconstitution and cellular model, we show that liquid-liquid phase separation of α-Syn precedes its aggregation. In particular, in vitro generated α-Syn liquid-like droplets eventually undergo a liquid-to-solid transition and form an amyloid hydrogel that contains oligomers and fibrillar species. Factors known to aggravate α-Syn aggregation, such as low pH, phosphomimetic substitution and familial Parkinson's disease mutations, also promote α-Syn liquid-liquid phase separation and its subsequent maturation. We further demonstrate α-Syn liquid-droplet formation in cells. These cellular α-Syn droplets eventually transform into perinuclear aggresomes, the process regulated by microtubules. This work provides detailed insights into the phase-separation behaviour of natively unstructured α-Syn and its conversion to a disease-associated aggregated state, which is highly relevant in Parkinson's disease pathogenesis.
- Published
- 2019
31. Liquid-liquid phase separation and liquid-to-solid transition mediate α-synuclein amyloid fibril containing hydrogel formation
- Author
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Jaladhar Mahato, Rakesh Kumar, Soumik Ray, Sushil Kumar Pandey, Siddhartha Maiti, Ranjith Padinhateeri, Amrendra K. Singh, Samir K. Maji, G. Krishnamoorthy, Juan Gerez, Debalina Datta, Ambuja Navalkar, Laxmikant G. Gadhe, Rajlaxmi Panigrahi, Surabhi Mehra, Ashutosh Kumar, Debdeep Chatterjee, Komal Patel, Nitu Singh, Sandhya Bhatia, Roland Riek, and Arindrajit Chowdhury
- Subjects
Mutation ,Amyloid ,Chemistry ,animal diseases ,medicine.disease_cause ,In vitro ,nervous system diseases ,Pathogenesis ,Aggresome ,nervous system ,Microtubule ,Biophysics ,medicine ,heterocyclic compounds ,Cellular model ,Oxidative stress - Abstract
SUMMARYα-Synuclein (α-Syn) aggregation and amyloid formation is directly linked with Parkinson’s disease (PD) pathogenesis. However, the early events involved in this process remain unclear. Here, using in vitro reconstitution and cellular model, we show that liquid-liquid phase separation (LLPS) of α-Syn precedes its aggregation. In particular, in vitro generated α-Syn liquid-like droplets eventually undergo a liquid-to-solid transition and form amyloid-hydrogel containing oligomers and fibrillar species. Factors known to aggravate α-Syn aggregation such as low pH, phosphomimic substitution, and familial PD mutation also promote α-Syn LLPS and its subsequent maturation. We further demonstrate α-Syn liquid droplet formation in cells, under oxidative stress. These cellular α-Syn droplets eventually transform into perinuclear aggresomes, the process regulated by microtubules. The present work provides detailed insights into the phase separation behavior of natively unstructured α-Syn and its conversion to a disease-associated aggregated state, which is highly relevant in PD pathogenesis.
- Published
- 2019
- Full Text
- View/download PDF
32. RoBAC—A New Way of Access Control for Cloud
- Author
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R. Venkatesh, N. UmaMaheswari, and G. Krishnamoorthy
- Subjects
010302 applied physics ,Engineering ,Location transparency ,Computer access control ,Java ,business.industry ,General Engineering ,020206 networking & telecommunications ,Access control ,Cloud computing ,02 engineering and technology ,Computer security ,computer.software_genre ,01 natural sciences ,Discretionary access control ,0103 physical sciences ,0202 electrical engineering, electronic engineering, information engineering ,Role-based access control ,business ,Cloud storage ,computer ,computer.programming_language - Abstract
Access control has made a long way from 1960s. With the advent changes of technologies pertaining to location transparency in storage of data, there arises different access control scenarios. Cloud storage, the predominant storage that is being in use currently, also paves way to various access control problems. Though there are various access control mechanisms such as RBAC, ABAC, they are designed on the user’s perspective such as the role held by the user or other attributes assigned to the user. A new access control mechanism called object relationship based access control (RoBAC) has been developed based on the relations held among the users. The policy decision of access control is based on the relationship among the classes followed in the Java programming. Results have shown that this model best suits various scenarios in the cloud environment, and it also shows that the time for making decision either to allow or to deny is reduced compared to the existing system.
- Published
- 2016
- Full Text
- View/download PDF
33. Fluorescence spectroscopy for revealing mechanisms in biology: Strengths and pitfalls
- Author
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G Krishnamoorthy
- Subjects
0301 basic medicine ,ALPHA-SYNUCLEIN ,DOMAIN FLUORESCENCE ,Complex system ,Maximum Entropy Method ,fluorescence quenching ,PROTEIN ,010402 general chemistry ,fluorescence anisotropy ,MAXIMUM-ENTROPY METHOD ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Fluorescence spectroscopy ,Fluorescence ,Bacterial protein ,03 medical and health sciences ,Population Heterogeneity ,fluorescence lifetime ,TIME-RESOLVED FLUORESCENCE ,Dynamic and formal equivalence ,LIFETIME DISTRIBUTIONS ,sample heterogeneity ,Saccharomyces cerevisiae Proteins ,General Medicine ,Tryptophan Metabolism ,Data science ,0104 chemical sciences ,030104 developmental biology ,AMYLOID PROTOFIBRILS ,DISEASE-ASSOCIATED MUTATIONS ,MOTIONAL DYNAMICS ,General Agricultural and Biological Sciences ,CORE TRYPTOPHAN - Abstract
This article describes the basic principles of steady-state and time-resolved fluorescence. The formal equivalence of the two methodologies is described first, followed by the extra advantages of time-resolved methods in revealing population heterogeneity in complex systems encountered in biology. Several examples from the author's work are described in support of the above contention. Finally, several misinterpretations and pitfalls in the interpretation of fluorescence data and their remedy are described.
- Published
- 2018
34. STRUCTURAL ABNORMALITIES OF THE TEMPORALIS TENDON IN PATIENTS DIAGNOSED WITH CHRONIC OROFACIAL PAIN CONDITIONS
- Author
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G. Krishnamoorthy, L. Henderson, Iacopo Cioffi, and Massieh Moayedi
- Subjects
musculoskeletal diseases ,Temporalis tendon ,Orthodontics ,myalgia ,Orofacial pain ,medicine.diagnostic_test ,business.industry ,Intraclass correlation ,Strain (injury) ,Magnetic resonance imaging ,medicine.disease ,Pathology and Forensic Medicine ,Tendon ,stomatognathic diseases ,medicine.anatomical_structure ,medicine ,Radiology, Nuclear Medicine and imaging ,Dentistry (miscellaneous) ,Surgery ,In patient ,Oral Surgery ,medicine.symptom ,business - Abstract
Background The diagnosis of temporomandibular disorders (TMDs), specifically TMD myalgia, can be challenging. Although the anatomy of the jaw muscles has been extensively characterized, a structural difference in TMD-myalgia individuals has never been demonstrated. Tendons are a highly specialized tissue with a predominately mechanical function. Collagen fibrils, the main contributor to tendon mechanical properties, begin macroscopic failure at 8% to 10% strain. The characterization of tendon/muscle abnormalities in individuals with chronic, painful TMD myalgia will lay the groundwork for utilizing noninvasive magnetic resonance imaging (MRI) for screening and objective monitoring of patients with TMD myalgia. A structural marker unique to TMD myalgia will aid in its diagnosis and treatment. Objective(s) This study aimed to determine differences in the tendon/muscle volume ratio of the temporalis muscle in patients with TMD myalgia compared with age-/gender-matched controls without facial pain. Study Design This was a retrospective, observational study of the temporalis muscle and tendon on MRI images. The comparison between groups was based on a voxel-based morphometry of anatomic T1-weighted MRI images and analyzed for differences in the tendon/muscle volume ratio. The study included at least 14 patients per group to detect a 5% difference in tendon/muscle volume ratio. An intraclass correlation coefficient was used to evaluate the intrarater test–retest reliability. General linear models were used to test whether the outcome measures (muscle/tendon volume, muscle/tendon T1 signal intensity, tendon/muscle ratio) are different between groups. Results Our pilot data demonstrated similar muscle volumes but significantly smaller tendon volumes and signal intensity when comparing patients with TMD myalgia with healthy controls (P Discussion/Conclusions Preliminary data suggest that chronic TMD myalgia may be associated with structural abnormalities of the temporalis tendon. Should the temporalis tendon/muscle volume ratio prove to be a reliable marker, this metric may be used to evaluate different treatment modalities in a noninvasive manner.
- Published
- 2019
- Full Text
- View/download PDF
35. Synthesis and antimicrobial activities of 1-(3-benzyl-4-oxo-3H-quinazolin-2-yl)-4-(substituted)thiosemicarbazide derivatives
- Author
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B. Narendar, Viswas Raja Solomon, Veerachamy Alagarsamy, G. Krishnamoorthy, and M. T. Sulthana
- Subjects
chemistry.chemical_classification ,quinazolinone ,Chemistry ,Aryl ,substituted thiosemicarbazide ,antitubercular activity ,General Chemistry ,Medicinal chemistry ,lcsh:Chemistry ,chemistry.chemical_compound ,lcsh:QD1-999 ,Nucleophile ,Thiourea ,anti-bacterial ,Sodium hydroxide ,Moiety ,Organic chemistry ,Amine gas treating ,Hydrate ,Dithiocarbamate - Abstract
A series of 1-(3-benzyl-4-oxo-3 H- quinazolin-2-yl)-4-(substituted) thiosemicarbazides ( AS1–AS10 ) were obtained by the reaction of 2-hydrazino-3-benzyl quinazolin-4(3 H) -one ( 6 ) with different dithiocarbamic acid methyl ester derivatives. The key intermediate, 3-benzyl-2-thioxo-2,3-dihydro-1 H -quinazolin-4-one ( 4 ), was obtained by the reaction of benzyl amine ( 1 ) with carbon disulphide and sodium hydroxide in dimethyl sulphoxide to give sodium dithiocarbamate, which was methylated with dimethyl sulphate to yield the dithiocarbamic acid methyl ester ( 2 ) and condensation with methyl anthranilate ( 3 ) in ethanol yielded the desired compound ( 4 ) via the thiourea intermediate. The SH group of compound ( 4 ) was methylated in the favourable nucleophilic displacement reaction with hydrazine hydrate, which afforded 2-hydrazino-3-benzyl-3 H- quinazolin-4-one ( 6 ). The IR, and 1H- and 13C-NMR spectra of these compounds showed the presence of peaks due to thiosemicarbazides, carbonyl (C=O), NH and aryl groups. The molecular ion peaks of the quinazolin-4-one moiety ( m / z 144) were observed in all the mass spectra of the compounds AS1–AS10 . Elemental (C, H, N) analysis satisfactorily confirmed purity and elemental composition of the synthesized compounds. All the synthesized compounds were screened for their antimicrobial activity against selective gram positive and gram negative bacteria by agar dilution method. In the present study, compounds AS8 and AS9 emerged as the most active compounds of the series.
- Published
- 2015
- Full Text
- View/download PDF
36. Preparation of collagen peptide functionalized chitosan nanoparticles by ionic gelation method: An effective carrier system for encapsulation and release of doxorubicin for cancer drug delivery
- Author
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Ashok M. Raichur, S. Anandhakumar, G. Krishnamoorthy, and Kunka Mohanram Ramkumar
- Subjects
Materials science ,Time Factors ,Carrier system ,Biocompatibility ,Cell Survival ,education ,Nanoparticle ,Bioengineering ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Biomaterials ,Chitosan ,chemistry.chemical_compound ,Mice ,Drug Delivery Systems ,Dynamic light scattering ,X-Ray Diffraction ,Neoplasms ,Spectroscopy, Fourier Transform Infrared ,Animals ,Humans ,Particle Size ,Cell Proliferation ,Drug Carriers ,technology, industry, and agriculture ,Materials Engineering (formerly Metallurgy) ,Hydrogen-Ion Concentration ,021001 nanoscience & nanotechnology ,Flow Cytometry ,Controlled release ,0104 chemical sciences ,Drug Liberation ,Targeted drug delivery ,chemistry ,Chemical engineering ,Mechanics of Materials ,Doxorubicin ,NIH 3T3 Cells ,Doxorubicin Hydrochloride ,Nanoparticles ,Collagen ,0210 nano-technology ,Peptides ,HeLa Cells - Abstract
In recent years, nanoparticles (NPs) based on biopolymers or peptides are gaining popularity for the encapsulation and release of drug molecules, especially for cancer therapy, due to their ability for targeted and controlled release. The use of collagen peptide (CP) for the preparation of chitosan (CN) NPs is especially interesting as it results in NPs that are stable under physiological conditions. In this work, mono-dispersed pH responsive CPCN NPs of about 100 nm were prepared via ionic gelation method by simple and mild co-precipitation of CN and CP. Investigation of NPs with Fourier transform infra-red (FTIR) spectroscopy and dynamic light scattering (DLS) measurements reveals that hydrogen bonding and electrostatic interactions are believed to be major driving forces for NP formation and drug encapsulation, respectively. Scanning electron microscopic (SEM) investigations show that hard and fine CPCN NPs transform to soft and bigger gel like particles as a function of collagen concentration. The unique ``polymeric gel'' structure of NPs showed high encapsulation efficiency towards doxorubicin hydrochloride (DOX) as well as pH controlled release. Anti-proliferative and cell viability analysis revealed that DOX loaded NPs showed excellent anti-proliferative characteristics against HeLa cells with favorable biocompatibility against normal cells. Such NPs have high potential for use as smart drug delivery carriers in advanced cancer therapy. (C) 2016 Elsevier B.V. All rights reserved.
- Published
- 2017
37. Rationalized method to enhance the chromium uptake in tanning process: role of Gallic acid
- Author
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G. Krishnamoorthy, Asit Baran Mandal, G. Ramamurthy, and Thotapalli Parvathaleswara Sastry
- Subjects
Economics and Econometrics ,Suspended solids ,Environmental Engineering ,Waste management ,Chemistry ,Organoleptic ,chemistry.chemical_element ,Management, Monitoring, Policy and Law ,Total dissolved solids ,General Business, Management and Accounting ,chemistry.chemical_compound ,Chromium ,Environmental Chemistry ,Thermal stability ,Gallic acid ,Effluent ,Nuclear chemistry ,Benzoic acid - Abstract
In the present study, a greener approach to tanning process based on Gallic acid (GA: Trihydroxy- benzoic acid) assisted chrome tanning has been attempted. The exhaustion, the thermal stability, mechanical strength and organoleptic properties of tanned leather as well as the evaluation of eco-friendly characteristics were investi- gated. The microshrinkage, differential scanning calori- metric and thermo mechanical analyses show the shrinkage temperature, denaturation temperature and % elongation, respectively, of GA-chrome-tanned leather are more than that of chrome alone. Chrome exhaustion greater than 93 % has been achieved. This high exhaust aid offers fullness and softness to leather compared to chrome alone. The environmental impact assessment reveals that the developed high exhaust chrome tanning process is benefi- cial as significant reduction in total solids content (TSC) such as dissolved solids and suspended solids in the effluent is achieved when compared to tanning with chrome alone. The GA could bring about the enhancement of chromium(III) uptake, significant reduction in TSC resulting in improved environmental, economic and social positive impact.
- Published
- 2013
- Full Text
- View/download PDF
38. Architecture of a Fiber Optics Based Distributed Information Network FORTIS: Local Area Network.
- Author
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Paul C. Barr and Suban G. Krishnamoorthy
- Published
- 1986
39. BK Channels in the Vascular System
- Author
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G, Krishnamoorthy-Natarajan and M, Koide
- Subjects
Cardiovascular Physiological Phenomena ,Animals ,Humans ,Calcium ,Large-Conductance Calcium-Activated Potassium Channels ,Cardiovascular System - Abstract
Autoregulation of blood flow is essential for the preservation of organ function to ensure continuous supply of oxygen and essential nutrients and removal of metabolic waste. This is achieved by controlling the diameter of muscular arteries and arterioles that exhibit a myogenic response to changes in arterial blood pressure, nerve activity and tissue metabolism. Large-conductance voltage and Ca(2+)-dependent K(+) channels (BK channels), expressed exclusively in smooth muscle cells (SMCs) in the vascular wall of healthy arteries, play a critical role in regulating the myogenic response. Activation of BK channels by intracellular, local, and transient ryanodine receptor-mediated "Ca(2+) sparks," provides a hyperpolarizing influence on the SMC membrane potential thereby decreasing the activity of voltage-dependent Ca(2+) channels and limiting Ca(2+) influx to promote SMC relaxation and vasodilation. The BK channel α subunit, a large tetrameric protein with each monomer consisting of seven-transmembrane domains, a long intracellular C-terminal tail and an extracellular N-terminus, associates with the β1 and γ subunits in vascular SMCs. The BK channel is regulated by factors originating within the SMC or from the endothelium, perivascular nerves and circulating blood, that significantly alter channel gating properties, Ca(2+) sensitivity and expression of the α and/or β1 subunit. The BK channel thus serves as a central receiving dock that relays the effects of the changes in several such concomitant autocrine and paracrine factors and influences cardiovascular health. This chapter describes the primary mechanism of regulation of myogenic response by BK channels and the alterations to this mechanism wrought by different vasoactive mediators.
- Published
- 2016
40. BK Channels in the Vascular System
- Author
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M Koide and G Krishnamoorthy-Natarajan
- Subjects
0301 basic medicine ,Membrane potential ,BK channel ,Endothelium ,biology ,Ryanodine receptor ,Myogenic contraction ,Vasodilation ,Cell biology ,Calcium sparks ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,Biochemistry ,medicine ,biology.protein ,Intracellular - Abstract
Autoregulation of blood flow is essential for the preservation of organ function to ensure continuous supply of oxygen and essential nutrients and removal of metabolic waste. This is achieved by controlling the diameter of muscular arteries and arterioles that exhibit a myogenic response to changes in arterial blood pressure, nerve activity and tissue metabolism. Large-conductance voltage and Ca(2+)-dependent K(+) channels (BK channels), expressed exclusively in smooth muscle cells (SMCs) in the vascular wall of healthy arteries, play a critical role in regulating the myogenic response. Activation of BK channels by intracellular, local, and transient ryanodine receptor-mediated "Ca(2+) sparks," provides a hyperpolarizing influence on the SMC membrane potential thereby decreasing the activity of voltage-dependent Ca(2+) channels and limiting Ca(2+) influx to promote SMC relaxation and vasodilation. The BK channel α subunit, a large tetrameric protein with each monomer consisting of seven-transmembrane domains, a long intracellular C-terminal tail and an extracellular N-terminus, associates with the β1 and γ subunits in vascular SMCs. The BK channel is regulated by factors originating within the SMC or from the endothelium, perivascular nerves and circulating blood, that significantly alter channel gating properties, Ca(2+) sensitivity and expression of the α and/or β1 subunit. The BK channel thus serves as a central receiving dock that relays the effects of the changes in several such concomitant autocrine and paracrine factors and influences cardiovascular health. This chapter describes the primary mechanism of regulation of myogenic response by BK channels and the alterations to this mechanism wrought by different vasoactive mediators.
- Published
- 2016
- Full Text
- View/download PDF
41. Site-specific structural dynamics of alpha-Synuclein revealed by time-resolved fluorescence spectroscopy: a review
- Author
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Shruti Sahay, Samir K. Maji, and G. Krishnamoorthy
- Subjects
0301 basic medicine ,Amyloid ,Alpha-Synuclein ,Secondary Structure ,Mutation, Missense ,Fibril ,medicine.disease_cause ,Fluorescence spectroscopy ,03 medical and health sciences ,chemistry.chemical_compound ,Aggregation ,medicine ,A-Synuclein ,Humans ,General Materials Science ,Instrumentation ,Protein secondary structure ,Spectroscopy ,Membrane-Binding ,Alpha-synuclein ,Mutation ,Helix ,Disease-Associated Mutations ,Ligand binding assay ,Protein ,Time-Resolved Fluorescence Spectroscopy ,Parkinsons-Disease ,Parkinson Disease ,Atomic and Molecular Physics, and Optics ,nervous system diseases ,Parkinson'S Disease ,030104 developmental biology ,Spectrometry, Fluorescence ,nervous system ,chemistry ,In-Vitro ,Biophysics ,Thioflavin ,Fibril Formation - Abstract
Aggregation of alpha-Synuclein (alpha-Syn) into amyloid fibrils is known to be associated with the pathogenesis of Parkinson's disease (PD). Several missense mutations of the a-Syn gene have been associated with rare, early onset familial forms of PD. Despite several studies done so far, the local/residue-level structure and dynamics of alpha-Syn in its soluble and aggregated fibril form and how these are affected by the familial PD associated mutations are still not clearly understood. Here, we review studies performed by our group as well as other research groups, where time-resolved fluorescence spectroscopy has been used to understand the site-specific structure and dynamics of alpha-Syn under physiological conditions as well as under conditions that alter the aggregation properties of the protein such as low pH, high temperature, presence of membrane mimics and familial PD associated mutations. These studies have provided important insights into the critical structural properties of alpha-Syn that may govern its aggregation. The review also highlights time-resolved fluorescence as a promising tool to study the critical conformational transitions associated with early oligomerization of alpha-Syn, which are otherwise not accessible using other commonly used techniques such as thioflavin T (ThT) binding assay.
- Published
- 2016
42. Fluorescence window reveals nucleic acid dynamics
- Author
-
G. Krishnamoorthy
- Subjects
Chemistry ,Dynamics (mechanics) ,Nucleic acid ,Biophysics ,Window (computing) ,Fluorescence - Published
- 2016
- Full Text
- View/download PDF
43. Polychlorinated biphenyls impair blood–brain barrier integrity via disruption of tight junction proteins in cerebrum, cerebellum and hippocampus of female Wistar rats
- Author
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K. Saranya, Senthamilselvan Bavithra, G. Krishnamoorthy, Kandaswamy Selvakumar, R. Lakshmi Prabha, and Jagadeesan Arunakaran
- Subjects
medicine.medical_specialty ,Cerebellum ,Health, Toxicology and Mutagenesis ,Hippocampus ,Biology ,Toxicology ,Blood–brain barrier ,Thiobarbituric Acid Reactive Substances ,chemistry.chemical_compound ,Internal medicine ,medicine ,Animals ,RNA, Messenger ,Rats, Wistar ,Carcinogen ,chemistry.chemical_classification ,Reactive oxygen species ,Tight Junction Proteins ,Tight junction ,Cerebrum ,Brain ,Hydrogen Peroxide ,General Medicine ,Polychlorinated Biphenyls ,Rats ,Neuroprotective Agents ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Biochemistry ,Environmental Pollutants ,Female ,Quercetin ,Lipid Peroxidation - Abstract
Polychlorinated biphenyls (PCBs) comprise a ubiquitous class of toxic substances associated with carcinogenic and tumor-promoting effects as well as neurotoxic properties. Reactive oxygen species, which is produced from PCBs, alters blood–brain barrier (BBB) integrity, which is paralleled by cytoskeletal rearrangements and redistribution and disappearance of tight junction proteins (TJPs) like claudin-5 and occludin. Quercetin, a potent antioxidant present in onion and other vegetables, appears to protect brain cells against oxidative stress, a tissue-damaging process associated with Alzheimer’s and other neurodegenerative disorders. The aim of this study is to analyze the role of quercetin on oxidative stress markers and transcription of transmembrane and cytoplasmic accessory TJPs on cerebrum, cerebellum and hippocampus of female rats exposed to PCBs. Rats were divided into the following four groups. Group I: received only vehicle (corn oil) intraperitoneally (i.p.); group II: received Aroclor 1254 at a dose of 2 mg/kg body weight (bwt)/day (i.p); group III: received Aroclor 1254 (i.p.) and simultaneously quercetin 50 mg/kg bwt/day through gavage and group IV: received quercetin alone gavage. From the experiment, the levels of hydrogen peroxide, lipid peroxidation and thiobarbituric acid reactive substances were observed to increase significantly in cerebrum, cerebellum and hippocampus as 50%, 25% and 20%, respectively, after exposure to PCB, and the messenger RNA expression of TJP in rats exposed to PCBs is decreased and is retrieved to the normal level simultaneously in quercetin-treated rats. Hence, quercetin can be used as a preventive medicine to PCBs exposure and prevents neurodegenerative disorders.
- Published
- 2012
- Full Text
- View/download PDF
44. Oxidative Stress by Tartrazine in the Testis of Wistar Rats
- Author
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B. Visweswaran and G. Krishnamoorthy
- Subjects
chemistry.chemical_classification ,Reactive oxygen species ,Antioxidant ,biology ,medicine.medical_treatment ,Glutathione peroxidase ,Glutathione reductase ,Pharmacology ,medicine.disease_cause ,Superoxide dismutase ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Catalase ,medicine ,biology.protein ,Tartrazine ,Oxidative stress - Abstract
The aim is to study the effect of Tartrazine (E102) - synthetic food colour - on the antioxidant status of testis of Wistar rats. Twelve male Wistar rats were grouped into 2 groups of six each - Control and Tartrazine-treated groups. Control group was orally administered with water alone while the experimental group was orally administered with tartrazine dissolved in water. The treatment was carried out for 60 days and the activities of antioxidant enzymes - superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx) and glutathione reductase (GR) and the levels of their cofactors were subsequently determined in the testis, along with histological studies. Activities of the 4 enzymes showed a common decrease with corresponding alterations in their cofactor levels. The colour orally administered to the experimental animals probably would have generated reactive oxygen species (ROS) and H2O2, thereby disrupting the enzymatic antioxidant defense of their testes. Tartrazine is capable of producing free radicals, which in turn cause damage to the cellular compartment system of rat testis.
- Published
- 2012
- Full Text
- View/download PDF
45. On Handling Large-Scale Polynomial Multiplications in Compute Cloud Environments using Divisible Load Paradigm
- Author
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Ganesh Neelakanta Iyer, Bharadwaj Veeravalli, and S. G. Krishnamoorthy
- Subjects
Polynomial ,Computer science ,business.industry ,Computation ,Distributed computing ,Redundancy (engineering) ,Aerospace Engineering ,Resource allocation ,Cloud computing ,Electrical and Electronic Engineering ,business ,Wireless sensor network ,Heterogeneous network - Abstract
Large-scale polynomial product computations often used in aerospace applications such as satellite image processing and sensor networks data processing always pose considerable challenge when processed on networked computing systems. With non-zero communication and computation time delays of the links and processors on a networked infrastructure, the computation becomes all the more challenging. In this research, we attempt to investigate the use of a divisible load paradigm to design efficient strategies to minimize the overall processing time for performing large-scale polynomial product computations in compute cloud environments. We consider a compute cloud system with the resource allocator distributing the entire load to a set of virtual CPU instances (VCI) and the VCIs propagating back the processed results to resource allocator for postprocessing. We consider heterogeneous networks in our analysis and we derive fundamental recursive equations and a closed-form solution for the load fractions to be assigned to each VCI. Our analysis also attempts to eliminate any redundant VCI-link pairs by carefully considering the overheads associated with load distribution and processing. Finally, we quantify the performance of the strategies via rigorous simulation studies.
- Published
- 2012
- Full Text
- View/download PDF
46. Protective role of lycopene on polychlorinated biphenyls (Aroclor 1254)-induced adult rat Sertoli cell dysfunction by increased oxidative stress and endocrine disruption
- Author
-
Jagadeesan Arunakaran, Perumal Elumalai, Kandaswamy Selvakumar, P. Venkataraman, and G. Krishnamoorthy
- Subjects
endocrine system ,medicine.medical_specialty ,urogenital system ,Glutathione ,Biology ,Sertoli cell ,medicine.disease_cause ,Lycopene ,chemistry.chemical_compound ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Internal medicine ,medicine ,Endocrine system ,Receptor ,Spermatogenesis ,Testosterone ,Oxidative stress ,Food Science - Abstract
The protective role of lycopene against various toxicants on various organs and its association with decreased oxidative stress seems to be well established. Sertoli cell function in the adult testis determines daily sperm production. Increasing evidence suggests that environmental pollutants including polychlorinated biphenyls (PCBs) are male infertility, which is associated with oxidative stress. Hence, the present study was designed to find out whether PCBs disrupt Sertoli cell function by inducing oxidative stress or endocrine disruption? Whether lycopene attenuates PCBs-induced disruption in Sertoli cells or not? Adult male rats were divided into four (vehicle control, lycopene, PCBs and PCBs + lycopene treated) groups. After the experimental period (30 days), the animals were decapitated for the blood collection and testes were removed for the isolation of Sertoli cells. In PCBs exposure, serum hormones (FSH, testosterone and estradiol), Sertoli cellular receptors (FSHR and AR) were significantly decreased whereas oxidative stress markers (H 2 O 2 and LPO) and ER-s expression in Sertoli cells were significantly increased. Sertoli cell functional proteins such as connexin 43, transferrin and androgen-binding protein expressions and the level of lactate were significantly decreased. However, simultaneous supplementation of lycopene to PCBs-exposed rats significantly decreased the endocrine disruption and oxidative stress in Sertoli cells. The findings point out that lycopene protects the Sertoli cell function by preventing PCBs-induced oxidative stress and endocrine disruption.
- Published
- 2011
- Full Text
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47. Rethinking of user studies in academic libraries in the context of paradigm shift due to ICT
- Author
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G. Krishnamoorthy, R. Pandian, and K. Kaliyaperumal
- Subjects
Multidisciplinary ,Multimedia ,Computer science ,business.industry ,Context (language use) ,computer.software_genre ,Digital library ,User studies ,World Wide Web ,Information and Communications Technology ,Paradigm shift ,Digital Archives ,The Internet ,business ,computer - Abstract
The modern libraries are equipped with latest technological developments ranging from digital Archives, repositories, delivery of the net contents and providing seamless global access to the digital information resources. This paper focuses on the importance of library user studies and stresses the required methodological procedures. Keywords: Digital library, ICT, users.
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- 2009
- Full Text
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48. Health science digital library: a model of the Tamilnadu Dr.M.G.R.Medical University in India
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R. Subramani and G. Krishnamoorthy
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Engineering ,Multidisciplinary ,business.industry ,Library science ,Digital library ,Engineering physics ,language.human_language ,Tamil ,Health science ,ComputingMilieux_COMPUTERSANDEDUCATION ,language ,Digital resources ,Post graduate ,business ,Digitization - Abstract
Health science digital library describes the distribution of the digital resources and digital library initiative of the Tamil Nadu Dr. M.G.R. Medical University. It discusses the brief information about the e-resources available in this University. It explains the method of digitization of previous examination question papers of Under Graduate and Post Graduate courses of Medicine. The total number of question papers digitized for all the courses is 17,489 numbers. A total number of 4652 question papers were digitized under the U.G. course (Medical), 3801 for U.G. course (Para Medical), 4678 for the Post Graduate (Medical) course, 1693 for the Post Graduate (Non-Medical), 1377 for Higher Specialties and 1288 Question papers for Diploma courses. Totally around19614 users accessed this e-resource through the University's website from January to December 2007.
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- 2009
- Full Text
- View/download PDF
49. Health Sciences in India: a Scientometric Study
- Author
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G. Krishnamoorthy and A. Amudhavalli
- Subjects
General Earth and Planetary Sciences ,Statistical analysis ,Subject (documents) ,Social science ,Activity index ,Psychology ,General Environmental Science ,Biomedical sciences - Abstract
This paper attempts to assess the R&D activity and its output in Health Sciences in India for about three decades, 1970 to 2000. Statistical analysis has been carried out using SPSS and other relevant measures. The subjects like General Medicine, Pharmacology, and Biochemistry were identified to be the top ranked 3 sub-disciplines. Objectives have been examined by using the Activity Index (AI). AI for cross comparison has been computed as suggested by Frame, as it characterizes the relative research effort a country devotes to a specific subject field. India’s R&D emphasis is found to be on Biochemistry among the top three sub-disciplines as its AI is found to be 136 compared to General Medicine and Pharmacology with 109 and 87 as AI respectively. However, India’s published literature is quantitatively larger in General Medicine (6016) than in Biochemistry (1091). With the AI found to be more than 100 in General Medicine and Biochemistry, these two subfields seem to reflect higher activities than the worl...
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- 2008
- Full Text
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50. Effects of diallyl disulfide (DADS) on expression of apoptosis associated proteins in androgen independent human prostate cancer cells (PC-3)
- Author
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R.C. Vignesh, D.N. Gunadharini, Kalimuthu Senthilkumar, G. Krishnamoorthy, Jagadeesan Arunakaran, Ramachandran Gayathri, A. Arunkumar, and Sivanantham Banudevi
- Subjects
Male ,medicine.medical_specialty ,Cell cycle checkpoint ,Clinical Biochemistry ,Antineoplastic Agents ,Apoptosis ,chemistry.chemical_compound ,Prostate cancer ,Cell Line, Tumor ,Internal medicine ,medicine ,Animals ,Humans ,Disulfides ,Garlic ,Molecular Biology ,Caspase ,bcl-2-Associated X Protein ,Caspase Cascade Pathway ,biology ,Diallyl disulfide ,Prostatic Neoplasms ,Cancer ,Cell Biology ,General Medicine ,medicine.disease ,Allyl Compounds ,Endocrinology ,Proto-Oncogene Proteins c-bcl-2 ,chemistry ,Caspases ,Cancer cell ,Androgens ,Cancer research ,biology.protein ,bcl-Associated Death Protein - Abstract
Prostate cancer is a leading cause of death among the aging men. Surgical or radiotherapy is effective when the cancer is confined to the prostate gland but once the cancer spreads beyond the pelvis even chemotherapy and hormonal ablation therapy fails in curing this disease. Our previous studies have shown that diallyl disulfide (DADS) induces cell cycle arrest and also induces apoptosis in PC-3 cells. And now the present study is focused to see whether there is an activation of caspase cascade pathway. Hence, in the present study the apoptotic effect of DADS is studied by Western blot analysis of caspase-3, -9, -10 and Bcl-2, Bad, and Bax protein. The Apoptotic cells were assessed by Hoechst 33342 staining with 25 and 40 microM concentrations of DADS for 24 h. The results have shown that DADS at 25 and 40 microM concentrations has induced the activation of caspases. There is a significant increase in the expression of caspases (3, 9, and 10). The proapoptotic protein Bax has significantly increased at 40 microM of DADS treatment and there is significant increase of Bad protein at both the concentration. Bcl-2 protein has significantly decreased in DADS treated cells. Therefore, the present investigation serves as evidence that DADS may be a therapeutic drug in the treatment of prostate cancer.
- Published
- 2008
- Full Text
- View/download PDF
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