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Gillnets are the primary fishing gear used to catch Atlantic cod (Gadus morhua) in coastal areas of Newfoundland and Labrador but are known to catch non-target species and produce lower quality fish than live-catch methods. The purpose of this study was to compare the catch efficiency of collapsible cod pots against gillnets near the Gilbert Bay Marine Protected Area (MPA), Labrador, where a reduction in by-catch is needed. Results showed that one cod pot caught half as much Atlantic cod as a gillnet, and pots had a relatively stable catch rate throughout the sampling period, whereas gillnets caught relatively few fish later in the sampling season. Moreover, nearly all fish sampled with pots were caught alive undamaged, whereas most gillnet-caught fish experienced damage or mortality. As a conservation measure pot-fishing would enable fishing within close proximity to the Gilbert Bay MPA and the live-release of visually distinguishable Gilbert Bay cod, thereby mitigating against the negative effects of commercial fishing on this protected Atlantic cod population.

During California’s Gold Rush of 1849–1855, thousands of miners rushed to San Francisco, Sacramento, and elsewhere throughout northern California, creating a significant demand for food. Here we investigate the role of Atlantic cod (Gadus morhua) and Pacific cod (G. macrocephalus) during the Gold Rush era using historical records, ancient DNA, and vertebral morphology in the cod assemblage recovered from Thompson’s Cove (CA-SFR-186H), a Gold Rush–era site in San Francisco. From the 18 cod bones recovered from Thompson’s Cove, our analysis of five specimens for ancient DNA indicates that Atlantic cod were imported during the 1850s, likely as a (largely) deboned, dried and salted product from the East Coast of the United States. Curiously, while locally available in very deep waters off the California coast, Pacific cod were minimally fished during the 1850s and became abundantly available in the 1860s after an Alaska-based fishery developed.

Climate change is anticipated to have multiple consequences for aquatic ectotherms. Warming temperatures, for example, are predicted to reduce body size in many fish species. Smaller sizes may be caused by physiological constraints associated with respiration, life-history responses to faster growth and concomitant earlier age at maturity, and interactive effects of fishing and climate change on evolution. Here, using a phylogenetically broad dataset of 100 marine species, we explore how natural mortality might respond to a 10% reduction in asymptotic length (L∞). We find that this decrease in size (predicted to be associated with a 1 °C ocean temperature increase) is likely to exacerbate natural mortality (M) for most marine fishes, albeit not all, on Canada’s Scotian Shelf. Across all bony fishes (Actinopterygii), the median proportional increase in natural mortality is 10.5%; limited data suggest that chondrichthyans are less affected. Smaller-bodied fish species experienced greater absolute increases in M than larger-bodied species. Among commercially exploited species for which sufficient data are available, M is predicted to increase by 0.14 for Atlantic mackerel (Scomber scombrus), 0.08 for Silver hake (Merluccius bilinearis), 0.04 for Atlantic herring (Clupea harengus), and 0.02 for Atlantic cod (Gadus morhua) and Pollock (Pollachias virens). The present study offers a simple means of exploring the mortality consequences of reduced body size hypothesized to result from globally warming water temperatures, thus contributing a potential tool for climate-change vulnerability assessments of marine fishes.

Numerous studies demonstrate the utility of information from coastal seine surveys for monitoring juveniles of Atlantic cod Gadus morhua, but few studies have linked such surveys to older ages within cohorts. We related juvenile (age-0 and -1) cod population components at a long-term monitoring site in Newfoundland to offshore pre-adult (age-3) cod recruitment at multiple spatial scales and explored some environmental and biological factors that affect juvenile-recruit relationships. Our models revealed significant relationships between juvenile and pre-adult abundance. The strength of these relationships varied with distance from nursery habitats and among fisheries management zones. Additionally, chlorophyll a concentration and body length during early life stages appeared to influence the strength of the relationship between juvenile and age-3 abundance. The potential to use juveniles as general indicators of future pre-adult abundance can aid in planning for low recruitment years and improve inferences about the response of cod population abundance to environmental changes. This study contributes to the growing body of knowledge demonstrating the utility of juvenile surveys in anticipating future year-class strength.

The fishery for Northern Atlantic cod (Gadus morhua) off Newfoundland and Labrador, Eastern Canada, presents the most spectacular case of an exploited stock crashed in a few decades by an industrial bottom trawl fishery under a seemingly sophisticated management regime after half a millennium of sustainable fishing. The fishery, which had generated annual catches of 100000 to 200000 tonnes from the beginning of the 16th century to the 1950s, peaked in 1968 at 810000 tonnes, followed by a devastating collapse and closure 24 years later. Since then, stock recovery may have been hindered by premature openings, with vessels targeting the remains of the cod population. Previous research paid little attention towards using multicentury time series to inform sustainable catches and recovery plans. Here, we show that a simple stock assessment model can be used to model the cod population trajectory for the entire period from 1508 to 2019 for which catch estimates are available. The model suggests that if fishing effort and mortality had been stabilized in the 1980s, precautionary annual yields of about 200000 tonnes could have been sustained. Our analysis demonstrates the value of incorporating prior knowledge to counteract shifting baseline effects on reference points and contemporary perceptions of historical stock status.

Cod was one of the most important fish species in the Baltic Sea, but its condition is deteriorating for several reasons, including an increasing parasite burden. The aim of this study was to determine the source of infection of Baltic cod with parasites by examination of invertebrates found in situ in the cod stomach. A total of 1681 cod were sampled during four research cruises in the southern Baltic Sea in 2012, 2013 and 2014 and the composition of their diet was analysed. Each prey item from cod stomach was identified to the lowest possible taxonomic level and a parasitological analysis of all invertebrates collected was performed. Crangon crangon, Saduria entomon and Mysis mixta were the most commonly represented invertebrates among food items. Hysterothylacium aduncum was found only in C. crangon. This host–parasite system is reported here for the first time in situ in the stomach of cod from the Baltic Sea, confirming the role of C. crangon in cod infection with H. aduncum.

Atlantic cod (Gadus morhua, Linnaeus 1758) in the western Gulf of Maine are managed as a single stock despite several lines of evidence supporting two spawning groups (spring and winter) that overlap spatially, while exhibiting seasonal spawning isolation. Low‐coverage whole‐genome sequencing was used to evaluate the genomic population structure of Atlantic cod spawning groups in the western Gulf of Maine and Georges Bank using 222 individuals collected over multiple years. Results indicated low total genomic differentiation, while also showing strong differentiation between spring and winter‐spawning groups at specific regions of the genome. Guided regularized random forest and ranked FST methods were used to select panels of single nucleotide polymorphisms (SNPs) that could reliably distinguish spring and winter‐spawning Atlantic cod (88.5% assignment rate), as well as males and females (95.0% assignment rate) collected in the western Gulf of Maine. These SNP panels represent a valuable tool for fisheries research and management of Atlantic cod in the western Gulf of Maine that will aid investigations of stock production and support accuracy of future assessments.

Grid systems separate fish species primarily through physical means: fish size and body shape. On Georges Bank off the northeast USA, many species of flounders are overfished, and their catch needs to be reduced. Flat-bodied skates are also often discarded. We tested a European style horizontal-bar grid system to reduce these flat-bodied low quota species in a trawl targeting the haddock (Melanogrammus aeglefinus), whose population is robust. The grid system consisted of 4 grid sections, two on each side, with horizontal bars 70 mm apart. The alternating tow method was used to compare the catch characteristics between a trawl with a grid section and the same trawl without a grid section. A video camera was used to observe fish escape in the grid section. The results indicate that the grid system reduced the flounder catch rate (mainly winter flounder, Pseudopleuronectes americanus) by 51.3%, and skates (mainly winter skate, Leucoraja ocellata and little skate, Leucoraja erinacea) by 29.4%, while there were no differences in the catch of Atlantic cod (Gadus morhua). While haddock was reduced by 37% by weight, the reduction was primarily small undersized individuals. There was no reduction in large haddock greater than 50 cm. Video observations indicates that flounders and cod mainly escaped from the bottom half of the grid while haddock were from the top half. These finding suggest that this system reduced low quota flounders, as well as discarded skates and small haddock, while retaining Atlantic cod and large size haddock. Underwater observations indicate that differential spacing (narrower on the top and wider on the bottom) may improve the system performance by releasing more flat-bodied fish, that were observed to escape from the bottom part of the grid, while retaining more haddock, which typically escape from the top part of the grid.

This compendium contains data and code for a single figure within this paper: Conrad, C., DeSilva, U., Bingham, B., Kemp, B.M., Gobalet, K.W., Bruner, K. and Pastron, A.G. in press. Finny Merchandise: The Atlantic Cod (Gadus morhua) Trade in Gold Rush-era San Francisco, California. Journal of Anthropological Research. Please see the Wiki (https://osf.io/j3z6f/wiki/) for more information.

Puerto Rico and Newfoundland are located at two extremes of the Atlantic Ocean, the former in the Caribbean Sea and the latter in the North Sea of the American continent. Both formations—former colonies from Spain and Great Britain—have been linked through the production and consumption of salted fish (that is, cod and other members of the Gadidae family) from the 16th to the 20th century. Spain transferred to the Caribbean colonies its “addiction” to cod, a cheap source of protein for peasants and laborers in the Peninsula, and a foodstuff that became the source of protein for slaves, peasants, and rural workers in the Caribbean.The British also used that alimentary strategy in their Caribbean colonies, which became importers of salted fish from New England, Labrador, Nova Scotia, and Newfoundland, a territory that dominated the production and processing (culling and salting) of cod. The plantation system required a cheap protein source for the slave labor force that the American codfish market provided. By the end of the 19th century, the supply of New England cod waned (due to a number of reasons), and that opened up an opportunity for Newfoundland to become the most important supplier of fish, a commodity mediated at first through the British authorities, and later by the merchants of the Dominion. The expansion of the productive frontier—from the 19th to the 20th century—required the investment of capital in larger boats and an increase in effort through the use of nets and long liners in waters distant from the inshore areas.This paper presents an anthropological and historical analysis of the relationship between Puerto Rico and the producers of salted fish in the North Sea, namely, New England and Newfoundland, through the use of a number of historical and ethnographical studies and, most importantly, through the analysis of primary sources from the General Archive of Puerto Rico, the National Records and Archives Administration in the United States, and the Provincial Archive of Labrador and Newfoundland. This research started, originally, with an interest in understanding the relationship between both markets in their complex export-import relationship, and with a special focus on the 20th century due to the availability of the primary sources. However, this effort led me to the search for other historical and ethnographic sources that documented the social, economic, and political processes that shaped the production of salted fish and the circulation of that commodity in the Atlantic Ocean, with emphasis on the Caribbean.In that context, the work of Jason Moore proved to be pertinent as a theoretical model to analyze the role of producers and consumers of cheap foodstuffs on a global scale. The World-Ecology model, and the concepts of production frontiers, commodity frontiers, and ecological surplus are extremely useful in understanding how Newfoundland expanded the productive frontier, both horizontally and vertically, by moving the effort from the inshore areas to the offshore banks, which required fishing in deeper waters. In order to provide a cheap commodity to the laborers of the plantation system of the Caribbean, the Newfoundland merchants exploited the unpaid labor of the women and children of the outports (coastal communities) in the processing phase (culling and salting), while forcing the men to look for cash in other subsidiary activities. Low wages and poor working conditions in the curing of fish discouraged laborers to do high-quality work, and therefore, the curing was not always of the required standard for the markets. However, the low-quality fish, the Labrador cure, found its way to the Puerto Rican market. The United States, in the defense of its vested interests in sugarcane cultivation and sugar production, imposed low prices for the importation of salted fish from Newfoundland, and therefore regulated the price per pound at the local markets.The work of Jason Moore matches the theoretical model developed by Daniel Pauly, a scientist devoted to the study of the global fisheries, and particularly those of the North Sea. For Pauly, the fate of the world fisheries has been in the hands of a threefold expansion (dubbed as the “toxic triad”) led by the development in fisheries technologies over the past four hundred years, and accelerated in the 19th and 20th centuries. Those are the geographical expansion, the bathymetric expansion and the taxonomic expansion. That is, global fisheries expanded their productive activities to new geographical frontiers hitherto explored or utilized, including depths. It also expanded the number of species caught, a process that impacted the food chain. Industrialization, and the use of trawler nets in the 20th century, depleted the North Sea fish stocks and destroyed benthic habitats, which contributed to the collapse of 1992. An “undercurrent” flowing in this paper consists of the argument that there is a strong correspondence between the theoretical thinking of Jason Moore and that of the most progressive fishery scientists, exemplified by Pauly.Over the last thirty years, I have been involved in research and applied work related to fisheries management and the conservation of habitats and fish populations and stocks. In understanding the relationship between Puerto Rico and Newfoundland, I became interested in the history of fisheries management and conservation, and the economic and political forces that contributed to the collapse of the stocks and populations of cod (Gadus morhua) and other Gadidae that forced the 1992 closure and the demise of one of the most important fisheries in our hemisphere. Data and interpretations from a number of studies suggest that, for a long period of time, the 1992 closure reflected the cumulative effect of centuries of the intensification of production, due to the demand for cod from different parts of the world. This paper suggests that Puerto Rico played a critical role in that process, due to the importance of imports from Newfoundland. Throughout the 20th century, Puerto Rico was one of the most important buyers of salted fish, importing as much as all the Caribbean islands at different points in time. That is a line of research that I will continue to pursue, and this paper is a first step in that direction.Newfoundland tried to maintain the salt fish market of the Caribbean until the 1960s, when Puerto Rico was in the midst of an industrialization and modernization process that reshaped the taste and consumption patterns of the population. By then, cod ceased to be a gastronomic addiction, despite the efforts of two merchant classes, one in St. John’s and the other in San Juan.The article is divided into eight sections that broadly cover the following topics: the history of salted fish consumption and production in the North Sea, Spain, and New England; the British and Newfoundland market in Puerto Rico; cod consumption in Puerto Rico during the 19th century; the relations of production (ecological surplus) that made possible cheap cod; 20th century transformations in Puerto Rico, and a final reflection on the role of Puerto Rico and Newfoundland in the World-Ecology.

Since the phasing out and eventual ban on the production of organohalogen flame retardants, the use of organophosphate flame retardants (OPFRs) has increased rapidly. This has led to the detection of OPFRs in various environments including the Arctic. Two of the most prevalent OPFRs found in the Arctic are tris(2-chloroisopropyl) phosphate (TCPP), and 2-ethylhexyl diphenyl phosphate (EHDPP). The impacts of exposure to OPFRs on Arctic organisms is poorly understood. The objective of the present study was to determine the effects of exposure to TCPP, EHDPP, and a mixture of OPFRs on gene expression patterns in Atlantic cod, Gadus morhua. Precision-cut liver slices from Atlantic cod in vitro were exposed to either TCPP or EHDPP alone or in a mixture and sampled at 2 different time points to quantify gene expression patterns using RNA sequencing. We exposed the liver slices to 2 concentrations of TCPP and EHDPP, one of which was chosen based on the levels found in the Arctic environment. The RNA sequencing results demonstrated differential expression of hundreds of genes in response to exposure. The genes representing cholesterol biosynthesis and lipid metabolism pathway were significantly enriched in all the treatment groups. Almost all the cholesterol biosynthesis genes were significantly down-regulated in response to OPFR exposure. The effects on these pathways could involve various physiological processes including reproduction, growth, and behavior as well as adaptation to changing temperatures. Membrane fluidity is an important adaptive mechanism among aquatic organisms. Altered cholesterol homeostasis could have long-term consequences by altering the adaptive potential of aquatic organisms to changing water temperatures, particularly those living in polar environments. These results suggest that OPFRs could have unique effects on the organisms living in the Arctic compared with other environments. Further studies are needed to understand the long-term impacts of exposure to environmentally realistic concentrations using laboratory and field-based studies. Environ Toxicol Chem 2021;40:1639-1648. © 2021 SETAC.

Atlantic cod (Gadus morhua) is one of the most commercially important fish species in the North Atlantic. Environmental factors, such as water temperatures, influence growth of individuals over time, thus forming population-specific growth patterns across climatic regions. Here we develop an integrative approach to investigate the role of temperature in shaping geographic differences of cod growth in the Celtic Sea, North Sea, Iceland, and Barents Sea. We combine a physiology-based growth model and 50-years observational temperature data of 0.5 × 0.5° spatial resolution to simulate continuous growth of cod. The model generated weight-at-age data for the period 1959–2007 which we compared to observational data from fishery-independent scientific surveys. In the Celtic and the northern North Sea, simulated growth matches well observational data. We also show that relatively warm temperatures in the Celtic Sea facilitate maximum growth rates; future warming is likely to have a negative impact on growth of these cod stocks. Growth simulations in Icelandic waters and the Barents Sea are less consistent with local observational data. More complex growth patterns in these regions are probably shaped by ontogenetic shifts in temperature regimes, feeding conditions and physiological adaptations. These findings should stimulate further research on critical processes to be considered in population-specific projections of growth of cod and productivity.

In subarctic Newfoundland, age-0 Atlantic cod (Gadus morhua) settle into coastal habitats in several summer–autumn pulses, resulting in broad length-frequency distributions before winter. Low winter temperatures and potential decreases in food availability pose challenges for young-of-year fish. To examine how size variation affects overwintering success under contrasting food scenarios, we conducted 114-day laboratory feeding trials at ambient overwinter sea temperatures, using demersal age-0 cod collected from Newman Sound, Newfoundland. We reared two size classes of juvenile cod under four daily ration levels (starvation, low, medium, high). We used Fulton’s K condition factor to interpret effects of food availability and fish size on survival over winter. We showed that small amounts of consumed food (−1) maximized winter growth and condition potential of juvenile cod in Newfoundland waters. With no food, survival of small cod dropped below 80% on Day 47, whereas survival of large juveniles remained >80% until Day 74. Therefore, we expect higher survival of earlier settlers and increased size-selective mortality in age-0 cod during either unproductive or protracted winters, when food abundance is often low.

A new dataset on the diet of Atlantic cod in the Barents Sea from the 1930s to the present day has been compiled to produce one of the largest fish diet datasets available globally. Atlantic cod is one of the most ecologically and commercially important fish species in the North Atlantic. The stock in the Barents Sea is by far the largest, as a result of both successful management and favourable environmental conditions since the early 2000s. As a top predator, cod plays a key role in the Barents Sea ecosystem. The species has a broad diet consisting mainly of crustaceans and teleost fish, and both the amount and type of prey vary in space and time. The data – from Russia, Norway and the United Kingdom – represent quantitative stomach content records from more than 400 000 fish and qualitative data from 2.5 million fish. Many of the data are from joint collaborative surveys between Norway and Russia. The sampling was conducted throughout each year, allowing for seasonal, annual and decadal comparisons to be made. Visual analysis shows cod diets have changed considerably from the start of the dataset in the 1930s to the present day. There was a large proportion of herring in the diets in the 1930s, whereas in more recent decades capelin, invertebrates and other fish dominate. There are also significant interannual asynchronous fluctuations in prey, particularly capelin and euphausiids. Combining these datasets can help us understand how the environment and ecosystems are responding to climatic changes, and what influences the diet and prey switching of cod. Trends in temperature and variability indices can be tested against the occurrence of different prey items, and the effects of fishing pressure on cod and prey stocks on diet composition could be investigated. The dataset will also enable us to improve parametrization of food web models and to forecast how Barents Sea fisheries may respond in the future to management and to climate change. The Russian data are available through joint projects with the Polar Branch of the Russian Federal Research Institute of Fisheries and Oceanography (VNIRO). The UK and Norwegian data (Townhill et al., 2020) are being released with this paper at https://doi.org/10.21335/NMDC-2139169383.

Otter trawling for fish is one of the world’s most productive yet problematic fishing methods due to its bycatch and discards; issues that have been mitigated in some fisheries by developing more selective trawls. This paper systematically reviews efforts published in international peer-reviewed papers over the past 30 years to identify beneficial (and limiting) factors and propose a way forward in this field. In total, 203 papers were assessed, encompassing many of the world’s fishing regions, and involving > 147 species, although 74% of efforts occurred in Europe mainly focussing on haddock (Melanogrammus aeglefinus) (64 papers) and cod (Gadus morhua) (59 papers). Common, simple modifications have involved increasing lateral-mesh openings to match the morphology of unwanted catches via larger diamond-shaped mesh, or simply turning meshes 45° or 90°, either throughout codends or as strategic windows in the posterior trawl. In some fisheries, more complex grids have improved size or species selection. Fewer attempts have been made to modify the anterior trawl, but varying sweep/bridle lengths, horizontal separator panels and longer headropes have realized benefits depending on species-specific behavioural responses. While the utility of many modifications is indisputable, experimental designs (mostly involving covers, but also alternate hauls and paired comparisons) have, in many cases, suffered low replication and/or confounding variables. These deficits may have compromised some results and contributed to repeated efforts in particular fisheries. We conclude that rigorous empirical assessments, initially focusing on the posterior trawl, but eventually encompassing anterior changes, combined with straightforward interpretation of results for stakeholders, are as important as the simplicity and reliability of modifications. Finally, by assessing the utility, applicability, advantages and disadvantages of the modifications developed, we provide a framework which could be followed in future work to reduce bycatch in these fisheries.

The snow crab (Chionoecetes opilio) is a newly established species in the Barents Sea, increasing in both distribution and abundance in recent years. We explore the potential importance of North-east Arctic cod (Gadus morhua) predation in structuring the snow crab population expansion in the Barents Sea, through an analysis of cod stomach content data from 2003 to 2018. Spatio-temporal patterns of snow crab within cod diet are assessed across years, between seasons, as well as ontogenetic trends, including predator–prey size relationships. Snow crab represents a new prey item for cod and in recent years the most dominant demersal crustacean species in cod diet. The proportion of snow crab within cod diet increases over time. Primarily 60–110 cm cod prey upon snow crab, mainly during the summer/autumn season. Our results support the idea that the snow crab is still expanding, shifting distribution north and westwards. Cod has the potential to regulate the snow crab population but is unlikely to be in direct competition with the fishery in the Barents Sea. This work suggests that cod can be used as biological sampling tools together with other monitoring programmes to elucidate how new species may affect predator–prey and food-web dynamics within an ecosystem context.

3,4-dichloroaniline (3,4-DCA) is one of the most widely produced anilines world-wide, used in plastic packaging, fabrics, pharmaceuticals, pesticides, dyes and paints as well as being a degradation product of several pesticides. 3,4-DCA has been detected in freshwater, brackish and marine environments. Although freshwater toxicity thresholds exist, very little toxicological information is available on marine and cold-water species. In this study, we exposed Atlantic cod (Gadus morhua) embryos (3–7 days post fertilization) to 3,4-DCA concentrations ranging from 8−747 μg/L for 4 days followed by a recovery period in clean sea water until 14 days post fertilization (dpf). The cod embryos were significantly more sensitive to acute 3,4-DCA exposure compared to other species tested and reported in the literature. At the highest concentration (747 μg/L), no embryos survived until hatch, and even at the lowest concentration (8 μg/L), a small, but significant increase in mortality was observed at 14 dpf. Delayed and concentration-dependent effects on surviving yolk-sac larvae, manifested as cardiac, developmental and morphometric alterations, more than a week after exposure suggest potential long-term effects of transient embryonic exposure to low concentrations of 3,4-DCA.

Long time series of reliable individual growth estimates are crucial for understanding the status of a fish stock and deciding upon appropriate management. Tagging data provide valuable information about fish growth, and are especially useful when age-based growth estimates and stock assessments are compromised by age-determination uncertainties. However, in the literature there is a lack of studies assessing possible changes in growth over time using tagging data. Here, data from tagging experiments performed in the Baltic Sea between 1971 and 2019 were added to those previously analysed for 1955–1970 to build the most extensive tagging dataset available for Eastern Baltic cod (Gadus morhua, Gadidae), a threatened stock with severe age-determination problems. Two length-based methods, the GROTAG model (based on the von Bertalanffy growth function) and a Generalized Additive Model, were used to assess for the first time the potential long-term changes in cod growth using age-independent data. Both methods showed strong changes in growth with an increase until the end of the 1980s (8.6–10.6cm/year for a 40cm cod depending on the model) followed by a sharp decline. This study also revealed that the current growth of cod is the lowest observed in the past 7 decades (4.3–5.1cm/year for a 40cm cod depending on the model), indicating very low productivity. This study provides the first example of the use of tagging data to estimate multidecadal changes in growth rates in wild fish. This methodology can also be applied to other species, especially in those cases where severe age-determination problems exist.

Among highly migratory fish species, nursery areas occupied by juveniles often differ from adult habitats. To better understand the spatial dynamics of Canada's Northern cod stock, juveniles caught off the east coast of Newfoundland and Labrador were compared to adults from the same region as well as individuals from other areas in Atlantic Canada using double-digest restriction site-associated DNA sequencing-derived single nucleotide polymorphisms. A reduced proportion of homozygotes with a chromosomal inversion located in linkage group 1 (LG1) was detected between juvenile and adult samples in the Northern cod stock region, potentially indicating age-dependent habitat use or ontogenetic selection for attributes associated with the many genes located in LG1. No selectively neutral genetic differences were found between samples from the Northern cod stock; nevertheless, significant differences were found between some of these samples and cod collected from St. Pierre Bank, Bay of Fundy, Browns Bank and the southern Scotian Shelf. Clustering analysis of variants at neutral loci provided evidence for three major genetic units: (a) the Newfoundland Atlantic Coast, (b) eastern and southern Gulf of St. Lawrence and Burgeo Bank and (c) the Bay of Fundy, Browns Bank and southern Scotian Shelf. Both adaptive and neutral population structure within the Northern cod stock should be considered by managers to promote demographic rebuilding of the stock.

Fish pots have lower catch efficiency than gillnets and trawls and, therefore, are rarely used for catching Atlantic cod (Gadus morhua) and similar species. Fish-retention devices (FRDs), non-return devices that permit fish to enter the pot while impeding exit, reduce the pot exit rate and therefore can increase catches. Conventional FRDs, however, also reduce entry rate and may not improve catches. To increase pot-catch efficiency, we developed and tested a new trigger-type FRD, made of transparent acrylic glass, which we named acrylic fingers (AFs). AFs are almost invisible underwater and offer little resistance to entering cod. We compared AFs with Neptune fingers (NFs), a conventional trigger-type FRD with a distinct visual outline, by observing cod entry and exit rates through both trigger types rigged to a pot in a net pen. Both trigger types significantly reduced exit rates compared with a funnel without triggers; however, NFs also reduced entry rates by visually deterring cod. Specifically, AFs have higher entry-to-exit ratios and therefore improve catch efficiency. Combining AFs with funnels further increased catch efficiency. Thus, transparent acrylic triggers present a promising new approach to increasing pot-catch efficiency and may increase the uptake of the cod pot, an environmentally low-impact gear.

In high latitude coastal regions, benthic scavenger communities are largely composed of invertebrates that play a key role in the cycling of organic matter. Factors including temperature and depth can structure Arctic and Subarctic fjord benthic communities, but the response of scavenging communities to these factors is poorly known. To address this, we compared scavenging fauna in eight fjords with different physical characteristics in Svalbard and northern Norway using time-lapse imagery of scavengers consuming Atlantic herring (Clupea harengus) bait. Fjords influenced by relatively warm Atlantic waters, both in Norway and Svalbard, had high scavenger richness. However, Svalbard fjords with negative bottom temperatures had the lowest species richness and were dominated by lysianassoid amphipods and ophiuroids. In these cold Svalbard fjords, the mean carrion removal rates were almost 20 times higher than mean values noted elsewhere, except in the warm Norwegian fjord Kaldfjorden. Amphipods and ophiuroids quickly reduced the bait to bones (207.6–304.7 g removed per hour (g h−1); mean 290.6 ± 7.3 g h−1, n = 4) in cold Svalbard fjords. In the warmer Svalbard fjords, carrion removal rates were low (0–51.5 g h−1; mean 14.6 ± 9.0 g h−1, n = 5). Carrion removal rates in Kaldfjorden were higher than other Atlantic Water influenced fjords (132.1 and 372.5 g h−1, n = 2) owing to the scavenging activity of Atlantic cod (Gadus morhua). The results demonstrate potential ecosystem responses to warming in Arctic and Subarctic fjords, particularly effects related to range expansion of boreal species. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

Management of Atlantic cod (Gadus morhua) off southern Newfoundland (Northwest Atlantic Fisheries Organization (NAFO) Subdivision 3Ps) entails allocated quotas and restrictions on fishing during late winter and springtime to protect presumed spawning aggregations. We present data collected from research trawls and handlines (1995–2014) indicating spawning inshore may occur near year-around with limited resting from December to February and with more contracted spring spawning possible offshore. A mixed general linear model with binomial error, using year as a random factor, recognized month and length as significant impacts on proportions of females spawning, but not gear or inshore–offshore location. Composite data indicated that females in spawning condition may be present inshore (∼10%–20% of adult females) from March to October. During 1997–1999, with 8–9 months sampled each year, protracted annual spawning schedules and interannual variability were evident. At present, the fishery primarily employs gillnets inshore and otter trawls offshore, with spring spawning closures offering only partial and inconsistent protection. Behavioural interference might be reduced by employing less intrusive longlines, as historically practiced in this fishery.

Conventional observations show spiny dogfish (Squalus acanthius Linnaeus) rarely eat Atlantic cod (Gadus morhua Linnaeus; 0.02% of stomachs) in the northwestern Atlantic Ocean. Critics express concern that digestion may limit species‐level prey identification, and with recovery from overfishing, dogfish populations may be suppressing cod by competition or predation. This study applied a real‐time PCR TaqMan assay to identify cod in dogfish stomachs collected by cooperating fishing boats during normal trawling operations (May 2014–May 2015; Gulf of Maine, Georges Bank). Conventional methods observed 51 different prey taxa and nearly 1,600 individual prey items, but no cod were observed. Cod DNA was detected in 31 (10.5%) of the dogfish stomachs, with a higher percentage of these from the homogenate of amorphous, well‐digested prey and stomach fluids (20 stomachs or 65%) than from discrete animal tissues (11 stomachs or 35%). Re‐examination of photographs of these 11 tissue samples revealed one whole, partially digested fish that could be recognized in hindsight as cod. Cod DNA was observed in dogfish stomachs year round: in January (1 of 1 trip), February (1 of 1), May (1 of 3), June (0 of 1), July (3 of 4), August (1 of 2), and October (3 of 3). Although these data suggest higher interaction rates between dogfish and cod than previously observed, addressing the population consequences of this predator–prey relationship requires a robust sampling design, estimates of digestion rates by dogfish to account for complete degradation of DNA sequences, and consideration for dogfish scavenging during fishing operations., This investigation leveraged samples from a cooperating fishing fleet to evaluate the feasibility of detecting Atlantic cod DNA in spiny dogfish stomachs. Detections occurred at higher rates than previously reported by traditional methods (visual inspection of stomachs). We consider necessary steps in the sampling design to robustly estimate predation rates by spiny dogfish on Atlantic cod.

During the 2010s, Atlantic cod Gadus morhua L. in the eastern Baltic Sea experienced increasing infection loads of the parasitic nematode Contracaecum osculatum (Rudolphi) in their livers. Starting in 2021, a mandatory part of the routine sampling protocol on Baltic monitoring surveys is to assign a liver category to individual cod livers, based on the number of nematodes visible on the liver surface, to follow spatiotemporal changes in nematode infection loads. The validity of the liver category method has never been evaluated. Based on data from 642 cod livers, the method was verified and found to be a good predictor of the total number of nematodes. Moreover, the probability of cod being in a critical condition increased with the parasite load. In addition to their direct applicability to Baltic cod, the present findings may inspire others working with disease in fish stocks to include parasite monitoring.

This study investigates stock mixing of genetically distinct Atlantic cod (Gadus morhua) stocks in the Kattegat, an area geographically located between the North Sea and the Baltic Sea, by combining genetic population identification with habitat assignments from hatch to capture from otolith microchemistry. Cod captured in Kattegat were genetically assigned to either the North Sea or the endemic Kattegat population. Otolith chemical fingerprints differed significantly between populations during the larval and pelagic juvenile stage with higher strontium and lower barium and manganese concentrations in the North Sea population than the Kattegat population, indicating that North Sea cod are spawned in the North Sea or Skagerrak and drift into the Kattegat during the early life stages. Individual cod of both populations undertook frequent, but predominantly short-term, migrations to other areas than the Kattegat, with

In this paper, we compile estimates of cod size distributions based on zooarchaeological data and contemporary length-frequency data to look at variability in size composition through time across the North Pacific, from the northern Kuril Islands through the Aleutian Islands to southeast Alaska. The results suggest that a strong longitudinal trend in cod size has remained consistent over time, with the largest cod found to the west. We find that five of nine sites show that overall cod length and distribution of the largest fish remain relatively unchanged. Two sites where we find truncation of the length distributions—or loss of the largest fish—are places where the modern fisheries have the longest history and have been most intense, suggesting a potential for anthropogenic impacts on these local populations. We acknowledge two limitations in these data: (1) there are differences in selectivity between the ancient and modern fisheries; and (2) seasonal variability in fish availability was observed to be an important explanatory variable in the modern data set, but the season of harvest is poorly understood for the ancient collections. Therefore, while differences observed between the two data sets suggest possible anthropogenic influence on the size structure of Pacific cod, they are not conclusive.

Round goby Neogobius melanostomus (Pallas 1814) has become a significant component in the diet of piscivorous fish from the Pomeranian Bay (Bornholm Basin, Baltic Sea). Proper identification of fish species in the diet of predators is significant in biological studies of fish and other aquatic animal species, and, with regard to N. melanostomus, it is important to the knowledge of trophic web structures in areas this species has invaded. A total of 142 individuals of N. melanostomus, measuring 16-174 mm standard length, were examined. Seventy-two fishes were caught during monitoring surveys in fishing grounds, whereas 70 were found in the stomachs of European perch Perca fluviatilis, pike-perch Sander lucioperca and Baltic cod Gadus morhua. The objective of the present study was to analyse the sagittal otoliths to identify variations in outer shape with increases in fish length; expand and correct descriptions of the sagitta, lapillus and asteriscus otoliths; and evaluate the relationships among otolith dimensions and fish standard length. The otoliths were described morphologically. The analysis of the outer shape of sagittal otoliths using Fourier analysis and multivariate statistics exhibited great phenotypic variability that was associated with fish length, including within pairs in individuals and/or among individuals in length classes. In addition, the asterisci and lapilli of N. melanostomus from selected specimens, which were described for the first time with regard to fish length, were found to be less variable compared to sagittal otoliths. This study presents the first analysis of intrapopulation phenotypic plasticity of N. melanostomus sagittal otolith morphology as it is linked to fish size.

Fish fraud is a problematic issue for the industry. For it to be properly addressed will require the use of accurate, rapid, and cost-effective tools. In this work, near infrared reflectance spectroscopy (NIRS) was used to predict nutritional values (protein, lipids, and moisture) as well as to discriminate between sources (farmed vs. wild fish) and conditions (fresh or defrosted fish). Samples of five whitefish species—Alaskan pollock (Gadus chalcogrammu), Atlantic cod (G. morhua), European plaice (Pleuronectes platessa), common sole (Solea solea), and turbot (Psetta maxima)—including farmed, wild, fresh, and frozen ones, were scanned by a low-cost handheld near infrared reflectance spectrometer with a spectral range between 900 and 1700 nm. Several machine learning algorithms were explored for both regression and classification tasks, achieving precisions and coefficients of determination higher than 88% and 0.78, respectively. Principal component analysis (PCA) was used to cluster samples according to classes where good linear discriminations were denoted. Loadings from PCA revealed bands at 1150, 1200, and 1400 nm as the most discriminative spectral regions regarding classification of both source and condition, suggesting the absorbance of OH, CH, CH2, and CH3 groups as the most important ones. This study shows the use of NIRS and both linear and non-linear learners as a suitable strategy to address fish fraud and fish QC.

Anisakid nematode larvae occur frequently in the liver of Atlantic cod, but merely few infection data from cod in waters around Greenland exist. The present study reports the occurrence of third-stage anisakid larvae in the livers of 200 Atlantic cod caught on fishing grounds along the West coast of Greenland (fjord systems of Maniitsoq) in May, June, August and September 2017. Classical and molecular helminthological techniques were used to identify the nematodes. A total of 200 cod livers were examined, and 194 were infected with third-stage nematode larvae (overall prevalence of infection 97%) with a mean intensity of 10.3 (range between 1 and 44 parasites per fish). Prevalences recorded were 96% for Anisakis simplex (s.l.), 55% for Pseudoterranova decipiens (s.l.) and 8% for Contracaecum osculatum (s.l.). Sequencing the mtDNA cox2 from 8 out of 23 these latter larvae conferred these to C. osculatum sp. B. A clear seasonal variation was observed, with a rise in A. simplex (s.l.) and P. decipiens (s.l.) occurrence in June and August and a decline in September. The study may serve as a baseline for future investigations using the three anisakids as biological indicators in Greenland waters.

Fish otoliths' chronometric properties make them useful for age and growth rate estimation in fisheries management. For the Eastern Baltic Sea cod stock (Gadus morhua), unclear seasonal growth zones in otoliths have resulted in unreliable age and growth information. Here, a new age estimation method based on seasonal patterns in trace elemental otolith incorporation was tested for the first time and compared with the traditional method of visually counting growth zones, using otoliths from the Baltic and North seas. Various trace elemental ratios, linked to fish metabolic activity (higher in summer) or external environment (migration to colder, deeper habitats with higher salinity in winter), were tested for age estimation based on assessing their seasonal variations in concentration. Mg:Ca and P:Ca, both proxies for growth and metabolic activity, showed greatest seasonality and therefore have the best potential to be used as chemical clocks. Otolith image readability was significantly lower in the Baltic than in the North Sea. The chemical (novel) method had an overall greater precision and percent agreement among readers (11.2%, 74.0%) than the visual (traditional) method (23.1%, 51.0%). Visual readers generally selected more highly contrasting zones as annuli whereas the chemical readers identified brighter regions within the first two annuli, and darker zones thereafter. Visual estimates produced significantly higher, more variable ages than did the chemical ones. Based on the analyses in our study, we suggest that otolith micro-chemistry is a promising alternative ageing method for fish populations difficult to age, such as the Eastern Baltic cod. This article is protected by copyright. All rights reserved.

The contrasting zones within otoliths are commonly used to infer age of fish, assuming that 1 opaque zone and 1 translucent zone (TZ) form per year. However, the periodicity of zone formation is often un-validated and susceptible to interpretation errors and uncertainties, which propagate into age-structured calculations. The western Baltic cod Gadus morhua (WBC) stock is currently evaluated through an age-based assessment, using the typical, temperate area assumption that TZs form in autumn/winter. The periodicity of zone formation was evaluated through a mark-recapture experiment with juvenile and young adult WBC. During 2014-2017, 9111 wild cod were tagged externally (T-bar anchor tag) and internally (injection with tetracycline-hydrochloride induced a permanent fluorescent mark on their otoliths) and released. Timing of TZ formation was reconstructed through examination of otoliths from recaptured age 0-3 cod for which all required information and otoliths were available (n = 59, length range: 173-500 mm). Contrary to the assumption that TZs are formed during winter, recaptured cod consistently formed 1 TZ per year, between summer and autumn, in both juveniles (age 0-1) and young adults (age 2-3). A calendar year in the otolith is therefore composed of a TZ with opaque material on either side. Coincidence of TZ formation and recent evidence of shallow-water avoidance and reduced feeding and growth in WBC during peak summer suggests that TZs are formed when metabolic demands cannot be met. The results improve accuracy of WBC age estimates and highlight the feasibility and importance of conducting age validation experiments.