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The acoustic adaptation hypothesis (AAH) and ecological character displacement (ECD) are two potential mechanisms shaping call evolution that can predict opposite trends for the differentiation of signals. Under AAH, signals evolve to minimize environmental degradation and maximize detection against background noise, predicting call homogenization in similar habitats due to environmental constraints on signals. In contrast, ECD predicts greater differences in call traits of closely related taxa in sympatry because of selection against acoustic interference. We used comparative phylogenetic analyses to test the strength of these two selective mechanisms on the evolution of advertisement calls in glassfrogs, a highly diverse family of neotropical anurans. We found that, overall, acoustic adaptation to the environment may outweigh effects of species interactions. As expected under the AAH, temporal call parameters are correlated with vegetation density, but spectral call parameters had an unexpected inverse correlation with vegetation density, as well as an unexpected correlation with temperature. We detected call convergence among co-occurring species and also across multiple populations from the same species in different glassfrogs communities. Our results indicate that call convergence is common in glassfrogs, likely due to habitat filtering, while character displacement is relatively rare, suggesting that costs of signal similarity among related species may not drive divergent selection in all systems.

The composition and diversity of animal-associated microbial communities are shaped by multiple ecological and evolutionary processes acting at different spatial and temporal scales. Skin microbiomes are thought to be strongly influenced by the environment due to the direct interaction of the host’s skin with the external media. As expected, the diversity of amphibian skin microbiomes is shaped by climate and host habitats, whereas phylogenetic effects appear to be weak. However, the relative strength of phylogenetic and environmental effects on amphibian skin microbiomes remains poorly understood. Here, we analysed sequence data from 1,091 adult salamanders in 41 species to characterise and compare the diversity and composition of skin bacteria. We assessed the relative contribution of climate, host habitat, and host phylogeny to the observed patterns of bacterial diversity. We found that microbial alpha was mainly associated with host habitat and climate, but that microbial beta diversity was more strongly associated with host taxonomy and phylogeny. This phylogeny effect predominantly occurred at intermediate levels of host divergence (0–50 Mya). Our results support the importance of environmental factors shaping the diversity of amphibian skin microbiomes, but also support host phylogenetic history as a major factor shaping these microbial communities.

Symbiotic bacterial communities are crucial to combating infections and contribute to host health. The amphibian skin microbiome plays an important role in protecting their hosts against pathogens such as Batrachochytrium dendrobatidis (Bd), one of the causative agents of chytridiomycosis, which is responsible for dramatic amphibian population declines worldwide. Although symbiotic skin bacteria are known to inhibit Bd growth, an understanding of the relationship between Bd genetic variability, environmental conditions, and skin bacterial communities is limited. Therefore, we examined the associations between Bd infection load, Bd genetic diversity and skin bacterial communities in five populations of Hyliola regilla (hypochondriaca) from environmentally contrasting sites in Baja California, Mexico. We observed differences in Bd genetics and infection load among sites and environments. Genetic analysis of Bd isolates revealed patterns of spatial structure corresponding to the five sites sampled. Amphibian skin bacterial diversity and community structure differed among environments and sites. Bacterial community composition was correlated with Bd genetic differences and infection load, with specific bacterial taxa enriched on infected and un-infected frogs. Our results indicate that skin-associated bacteria and Bd strains likely interact on the host skin, with consequences for microbial community structure and Bd infection intensity.

The skin microbiome in amphibians has gained a lot of attention as some of its members play a protective role against pathogens such as the fungus Batrachochytrium dendrobatidis (Bd). The composition of skin bacterial communities has been suggested as one of the factors explaining differences in susceptibility to Bd among amphibian species and populations. The boreal toad Anaxyrus boreas is known to be susceptible to Bd, and severe population declines in its southeastern range have been documented. However, throughout A. boreas distribution, populations present differences in susceptibility to Bd infections which may be associated with differences in skin microbial diversity. This study compared the skin bacterial diversity and Bd infection levels of A. boreas in one desert population and one pine forest population from Baja California, Mexico. We found that desert and pine forest toad populations exhibit differences in skin bacterial community structure but show similar Bd infection levels. Using a predictive method, we found that the abundance of bacteria with potential Bd-inhibitory properties differed between uninfected and infected individuals but not between populations. Our data suggest that several bacteria in the skin community may be offering protection from Bd infections in these A. boreas populations. This study provides foundational evidence for future studies seeking to understand the skin-microbial variation among boreal toads’ populations and its relation with Bd susceptibility.

The recent emergence of the pathogen

Chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), is a devastating infectious disease of amphibians. Retrospective studies using museum vouchers and genetic samples supported the hypothesis that Bd colonized Mexico from North America and then continued to spread into Central and South America, where it led to dramatic losses in tropical amphibian biodiversity (the epizootic wave hypothesis). While these studies suggest that Bd has been in Mexico since the 1970s, information regarding the historical and contemporary occurrence of different pathogen genetic lineages across the country is limited. In the current study, we investigated the historical and contemporary patterns of Bd in Mexico. We combined the swabbing of historical museum vouchers and sampling of wild amphibians with a custom Bd genotyping assay to assess the presence, prevalence, and genetic diversity of Bd over time in Mexico. We found Bd-positive museum specimens from the late 1800s, far earlier than previous records and well before recent amphibian declines. With Bd genotypes from samples collected between 1975-2019, we observed a contemporary dominance of the global panzootic lineage in Mexico and report four genetic subpopulations and potential for admixture among these populations. The observed genetic variation did not have a clear geographic signature or provide clear support for the epizootic wave hypothesis. These results provide a framework for testing new questions regarding Bd invasions and their temporal relationship to observed amphibian declines in the Americas.

Hyalinobatrachium fleischmanni is one of the widest ranging glassfrog species, occurring in the lowlands from Mexico through Central America to Ecuador. Despite its conservative morphology, previou...

We describe a new species of salamander of Bolitoglossa (Oaxakia) Parra-Olea, García-París and Wake, 2004 from the cloud forests of the central portion of the Sierra Madre del Sur highlands in the Mexican state of Guerrero. Bolitoglossa coaxtlahuacana sp. nov. is currently known only from the type locality and can be differentiated from other members of the group by morphological, coloration, and molecular evidence. With the description of this new taxon, the number of species in the subgenus Oaxakia increases to six.

Batrachochytrium salamandrivorans (Bsal), a species related to the destructive pathogen Batrachochytrium dendrobatidis (Bd), was found and identified in Europe in 2013. Now, a decade later, a large amount of information is available. This includes data from studies in the field, reports of infection in captive amphibians, laboratory studies testing host susceptibility, and data from prospective studies that test for Bsal’s presence in a location. We conducted a systematic review of the published literature and compiled a dataset of Bsal tests. We identified 67 species that have been reported positive for Bsal, 20 of which have a threatened conservation status. The distribution of species that have been found with infection encompasses 69 countries, highlighting the potential threat that Bsal poses. We point out where surveillance to detect Bsal have taken place and highlight areas that have not been well monitored. The large number of host species belonging to the families Plethodontidae and Salamandridae suggests a taxonomic pattern of susceptibility. Our results provide insight into the risk posed by Bsal and identifies vulnerable species and areas where surveillance is needed to fill existing knowledge gaps.

Senticolis triaspis is a widespread polytypic colubrid snake that ranges from the southwestern United States southward along the Pacific Coast and part of the Atlantic Coast of Mexico to Costa Rica. Three subspecies have been described based on differences in color pattern and scutellation: S. t. intermedia, S. t. mutabilis, and S. t. triaspis. The last taxonomic revision was completed in 1960. Here, we present an integrative taxonomic analysis of geographic variation using multiple sources of evidence: mitochondrial DNA (817 bp ND4 from 62 samples), traditional morphology (meristic and mensural characters), geometric morphometrics of head shape, and bioclimatic estimates of environmental niche similarity. Molecular data revealed two deeply divergent mitochondrial lineages corresponding to northern and southern clades and eight well-supported clades within these two main groups. Head shape and niche models also showed north–south differences, while traditional morphological analyses did not discriminate among mtDNA lineages. Thus, our study suggests there are at least two candidate species within Senticolis triaspis based on the mtDNA divergence, differences in head shape, and non-overlapping ecological niches. However, we refrain from making taxonomic recommendations pending the addition of nuclear DNA sequence data, finer sampling at contact zones, and additional morphological data; these data are warranted to provide a more robust, stable species delimitation.

Host microbial communities are increasingly seen as an important component of host health. In amphibians, the first land vertebrates that are threatened by a fungal skin disease globally, our understanding of the factors influencing the microbiome of amphibian skin remains incomplete because recent studies have focused almost exclusively on bacteria, and little information exists on fungal communities associated with wild amphibian species. In this study, we describe the effects of host phylogeny, climate, geographic distance, and infection with a fungal pathogen on the composition and structure of bacterial and fungal communities in seven tropical salamander species that occur in the Trans-Mexican Volcanic Belt of Central Mexico. We find that host phylogenetic relatedness is correlated with bacterial community composition while a composite climatic variable of temperature seasonality and precipitation is significantly associated with fungal community composition. We also estimated co-occurrence networks for bacterial and fungal taxa and found differences in the degree of connectivity and the distribution of negative associations between the two networks. Our results suggest that different factors may be responsible for structuring the bacterial and fungal communities of amphibian skin and that the inclusion of fungi in future studies could shed light on important functional interactions within the microbiome.

Amphibian chytridiomycosis panzootic is ongoing and continuing to have extensive worldwide impact on amphibians. Severity of chytridiomycosis-associated amphibians declines is partly associated with species’ altitudinal ranges. Michoacan state in Mexico harbors 54 amphibian species on a wide range of climates, including high-altitude areas (above 3000 masl), suitable for Bd growth, such as the Monarch Butterfly Biosphere Reserve. This study aims to document patterns of Bd infection on the riparian amphibian community from this high altitude, as well as explore differences in infection rates and seasonality among amphibians’ functional groups. We found Bd at all six sampled sites and registered Bd in eight of the 11 evaluated amphibian species, including two species at global risk. Two functional groups showed the highest Bd prevalence: aquatic salamanders (AqS) (84%) and semiaquatic frogs (SaqF) (76%). A negative relationship between Bd prevalence, temperature and rainfall was found for both groups. This relation was markedly strong (0.95) during the winter, at temperatures below 7 °C and 10 °C) and moisture (> 100 mm), especially for AqS and SaqF. No dead or sick individuals were found throughout the whole sampling survey. These low pathogenicity levels were probably related to the predominating low environmental temperatures of this high-altitude habitat preventing optimal Bd growth, particularly during winter. Our results suggest that an increase in environmental temperatures in high-altitude areas, as is predicted for the trans-Mexican volcanic belt, might negatively affect amphibian communities by making them more vulnerable because of a likely increase in Bd load.

The skin microbiome in amphibians has gained a lot of attention as some of its members play a protective role against pathogens such as the fungus Batrachochytrium dendrobatidis (Bd). The composition of skin bacterial communities has been suggested as one of the factors explaining differences in susceptibility to Bd among amphibian species and populations. The boreal toad Anaxyrus boreas is known to be susceptible to Bd, and severe population declines in its southeastern range have been documented. However, throughout A. boreas distribution, populations present differences in susceptibility to Bd infections which may be associated with differences in skin microbial diversity. This study compared the skin bacterial diversity and Bd infection levels of A. boreas in one desert population and one pine forest population from Baja California, Mexico. We found that desert and pine forest toad populations exhibit differences in skin bacterial community structure but show similar Bd infection levels. Using a predictive method, we found that the abundance of bacteria with potential Bd-inhibitory properties differed between uninfected and infected individuals but not between populations. Our data suggest that several bacteria in the skin community may be offering protection from Bd infections in these A. boreas populations. This study provides foundational evidence for future studies seeking to understand the skin-microbial variation among boreal toads' populations and its relation with Bd susceptibility.

We assessed the effect of temperature on subclinical Batrachochytrium dendrobatidis (Bd) infection in three species of plethodontids. Collected individuals were tested for Bd in the field during the dry and rainy season and randomly assigned to 15° and 18°C treatments for 30 days. We collected 129 salamanders, of these nine individuals tested positive for Bd in the field. At the two temperature trials, 12 individuals that were Bd-negative in the field, tested positive for Bd. Near the end of the temperature trials, 18 of 21 Bd-positive individuals tested negative for Bd. Three individuals that were Bd positive in the field and assigned to the 18°C trial died during the experiment. Our results suggest that at 15°C the most of plethodontids present subclinical infection, whereas at higher temperatures, Bd infection can increase to detectable levels. The processes underlying plethodontids’s recovery from Bd infection warrants further study.

Salamanders of the tribe Bolitoglossini Hallowell are a highly diversified group of amphibians, and their helminth parasite fauna has been scarcely studied. Some species of plethodontid salamanders distributed along the Trans-Mexican Volcanic Belt, in central Mexico, were sampled, and their helminth parasites were recovered for taxonomic identification. Specimens of a pharyngodonid nematode from 2 species of bolitoglossines of the genus Pseudoeurycea Taylor were morphologically identified as Batracholandros salamandrae (Schad, 1960) Petter and Quentin, 1976. These specimens were studied in further detail through light and scanning electron microscopy and were sequenced for 2 ribosomal genes and 1 mitochondrial gene to test the hypothesis of whether B. salamandrae is a species widely distributed in salamanders across the Nearctic biogeographic region, or if it represents a cryptic species complex. Our molecular results revealed that these specimens consisted of 2 genetic lineages in concordance with host species, although with slight morphological differences among specimens in each of them. A thorough study, including the generation of molecular data from individuals from other areas of North America, and the examination of type specimens, is required to test the reliability of these morphological differences and to corroborate the species identity of the 2 genetic lineages.

Skin-associated bacteria are known to inhibit infection by the fungal pathogen Batrachochytrium dendrobatidis (Bd) in amphibians. It has also been postulated that skin-associated bacterial community is related to Bd infection intensity. However, our understanding of host microbial dynamics and their importance in regulating Bd intensity is limited. We analyzed Bd infection and skin-associated bacteria from two amphibian species, the salamander Ambystoma rivulare and the frog Lithobates spectabilis that co-occurred in a tropical high-altitude site in central Mexico. Sixty-three percent of sampled salamander individuals and 80% of frog individuals tested positive for Bd. Overall, we registered 622 skin-associated bacterial genera, from which 73 are known to have Bd inhibitory effects. These inhibitory taxa represented a relative abundance of 50% in relation to total relative bacterial abundance. Our results indicated that, although sharing some bacterial taxa, bacterial community from the skin of both species was different in taxonomic composition and in relative abundance. Pseudomonas spp. and Stenotrophomonas spp. were among the five most abundant bacterial taxa of both species. Both bacterial taxa inhibit Bd infection. We detected that bacterial richness and relative abundance of inhibitory Bd bacteria were negatively related to intensity of Bd infection independent of species and seasons. Despite the high Bd prevalence in both host species, no dead or sick individuals were registered during field surveys. The relatively low levels of Bd load apparently do not compromise survival of host species. Therefore, our results suggested that individuals analyzed were able to survive and thrive under a dynamic relation with enzootic infections of Bd and their microbiota.

The North American tiger salamander species complex, including its best-known species, the Mexican axolotl, has long been a source of biological fascination. The complex exhibits a wide range of variation in developmental life history strategies, including populations and individuals that undergo metamorphosis, those able to forego metamorphosis and retain a larval, aquatic lifestyle (i.e., paedomorphosis), and those that do both. This life history variation has been assumed to lead to reproductive isolation and speciation, but the degree to which it has shaped population- and species-level divergence is poorly understood. Using a large multi-locus dataset from hundreds of samples across North America, we identified genetic clusters across the geographic range of the tiger salamander complex. These clusters often contain a mixture of paedomorphic and metamorphic taxa, indicating that geographic isolation has played a larger role in lineage divergence than paedomorphosis in this system. This conclusion is bolstered by geography-informed analyses indicating no effect of life history strategy on population genetic differentiation and by model-based analyses demonstrating gene flow between adjacent metamorphic and paedomorphic populations. This fine-scale genetic perspective on life-history variation establishes a framework for understanding how plasticity, local adaptation, and gene flow contribute to lineage divergence. Many members of the tiger salamander complex are endangered, and the Mexican axolotl is an important model system in regenerative and biomedical research. Our results chart a course for more informed use of these taxa in experimental, ecological, and conservation research.SignificanceStatementPopulation structure and speciation are shaped by a combination of biotic and abiotic factors. The tiger salamander complex has been considered to be a key group where life history variation has led to a rapid rate of speciation, driven in large part by the evolution of obligate paedomorphosis–a condition where adults maintain an aquatic, larval phenotype. Using a large multi-locus dataset, we present evidence of gene flow between taxa with different life history strategies, suggesting that obligate paedomorphosis is not a strong driver of speciation in the tiger salamander complex. Many of these nominal taxa are listed as critically endangered, and our genetic results provide information and guidance that will be useful for their conservation.

Frogs of the genus Eleutherodactylus are direct developing frogs grouped into five subgenera and 192 species, with a geographic distribution primarily centered in the Caribbean (Padial et al. 2014). Eleutherodactylus species inhabit a variety of environments such as tropical and temperate forests, and scrub, where they occupy different microhabitats including caves, floors rich in leaf litter, cracks and cavities of limestone and volcanic outcrops (Reyes-Velasco et al. 2015). Mexico harbors 33 species of Eleutherodactylus (AmphibiaWeb 2018), most of them distributed in central-western and southwestern Mexico (Reyes-Velasco et al. 2015).

Microbial symbionts are increasingly recognized as playing a critical role in organismal health across a wide range of hosts. Amphibians are unique hosts in that their skin helps to regulate the exchange of water, ions, and gases, and it plays an active role in defense against pathogens through the synthesis of anti-microbial peptides. The microbiome of amphibian skin includes a diverse community of bacteria known to defend against pathogens, including the global pandemic lineage of Batrachochytrium dendrobatidis associated with mass amphibian die-offs. The relative influence of host phylogeny and environment in determining the composition of the amphibian skin microbiome remains poorly understood. We collected skin swabs from montane amphibians in Mexico and Guatemala, focusing on two genera of plethodontid salamanders and one genus of frogs. We used high throughput sequencing to characterize the skin bacterial microbiome and tested the impact of phylogeny and habitat on bacterial diversity. Our results show that phylogenetic history strongly influences the diversity and community structure of the total bacterial microbiome at higher taxonomic levels (between orders), but on lower scales (within genera and species), the effect of habitat predominates. These results add to a growing consensus that habitat exerts a strong effect on microbiome structure and composition, particularly at shallow phylogenetic scales.

Only two species of Ixalotriton, I. niger and I. parvus, are currently known, and both are endemic to small regions of Chiapas, Mexico. An additional population of black Ixalotriton has recently been reported from caves on Cerro Baul, near the only known locality of I. parvus. We conducted morphological and molecular analyses of animals from the new population and I. niger to determine whether they are conspecific. Animals from the Cerro Baul population resemble I. niger morphologically, but they are somewhat divergent in mitochondrial sequence. We assign them to I. niger because of the lack of diagnostic morphological differences. This expands the range of I. niger to a second locality and puts the two species of Ixalotriton in sympatry, although they are separated by microhabitat. Protection for the new population is urgently needed, given declines in abundance of I. niger at the type locality.

Lambert et al . question our retrospective and holistic epidemiological assessment of the role of chytridiomycosis in amphibian declines. Their alternative assessment is narrow and provides an incomplete evaluation of evidence. Adopting this approach limits understanding of infectious disease impacts and hampers conservation efforts. We reaffirm that our study provides unambiguous evidence that chytridiomycosis has affected at least 501 amphibian species.

The genusChiropterotritonis endemic to Mexico with a geographical distribution along the Sierra Madre Oriental, the Trans Mexican Volcanic Belt and the Sierra de Juárez. The recent use of molecular tools has shown that Mexico’s amphibian diversity is highly underestimated, including a large number of cryptic, unnamed species.Chiropterotritonhas 18 described species including terrestrial, arboreal and cave-dwelling species. In previous molecular studies, the presence of multiple undescribed species was evident. We present a phylogenetic hypothesis based on mitochondrial data, which includes all described species and six undescribed taxa. Based on the morphological analyses and, when available, combined with molecular data, we describe five new species of the genus;Chiropterotriton casasisp. nov.,C. ceronorumsp. nov.,C. meliponasp. nov.,C. perotensissp. nov. andC. totonacussp. nov. In addition, we redescribe two others:Chiropterotriton chiropterusandC. orculus, and provide a comparable account of one additional sympatric congener. This increases the number of species in the genus to 23, which represent a considerable component of Mexican plethodontid richness.

A new species of treefrog from the genus Charadrahyla is described from the cloud forest of western Sierra Madre del Sur of Oaxaca, Mexico. Charadrahyla sakbah sp. nov., is distinguished from the rest of the species in the genus by the large body size (81.15–85.75 mm and 67.91–73.21 mm in adult females and males respectively), axillary membrane, adult males with hypertrophied webbings between toes I and II, nuptial excrescences, one enlarged conical tubercle on either side of vent, vocal slits absent, and sexual dimorphism in the snout shape in dorsal profile (rounded and acuminate in females and males respectively). The hypertrophied webbings are a unique character among other hylids of Middle America, and are only present in C. trux, C. tecuani and the species described herein. These three species inhabit the cloud forest of the Sierra Madre del Sur, and are probably closely related. However, more detailed phylogenetic analyses are needed to define the internal relationships of the genus. The cloud forest in the Sierra Madre del Sur continues to be known for a high number of endemic species. However, the cloud forest faces several threats due to its limited distribution that make it a priority ecosystem for conservation.

Chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd) and B. salamandrivorans (Bsal), is an infectious disease of amphibians linked to mass amphibian die-offs worldwide. In this study, we sampled four dead and dying individuals of Ambystoma altamirani and Lithobates montezumae to detect the presence of Bd and Bsal. By real-time PCR (qPCR) and histopathology methods, we found the presence of Bd and the absence of Bsal in all individuals sampled. Our study indicates that chytridiomycosis may act as a threat for these species and highlight that future surveys are urgently needed to evaluate the Bd infection on populations of A. altamirani and L. montezumae.

Facultative or obligate paedomorphosis has evolved several times in Mexican populations of the salamander genus Ambystoma, leading to increased genetic divergence among populations with alternate life histories and contributing to population divergence in this species complex. In the present study, we surveyed the genetic diversity of Ambystoma populations in lakes of the Cuenca Oriental, a high elevation closed drainage basin that encompasses permanent crater lakes harbouring salamander populations. We genotyped individuals from five populations aiming to better understand population dynamics and the evolution of paedomorphosis in this system. Specifically, we tested the hypotheses that the evolution of paedomorphosis in Ambystoma taylori resulted in reduced genetic exchange with populations of Ambystoma velasci in neighbouring lakes. Second, we tested whether the populations in brackish lakes of the Cuenca Oriental, Lake Atexcac, and Lake Alchichica show restricted gene flow across the basin, possibly as a result of local adaptation to those microhabitats. Using various indices of population genetic diversity, Bayesian assignment, and approximate Bayesian computation methods, we show that genetic exchange between brackish lakes and freshwater lakes is negligible, despite continued gene flow among freshwater lakes. We show that the first divergence among populations occurred between Alchichica and the remaining populations and that the evolution of paedomorphosis in A. taylori was likely favoured by local adaptation to saline conditions, thus increasing its genetic isolation. An apparently similar process appears to be in progress independently in lake Atexcac, showing that local adaptation may play an important role in population isolation and, ultimately, in speciation.

"The first record about the pathogenic fungus Batrachochytrium dendrobatidis in Mexican plethodontid salamanders dates back to the 1970s. However, little is known of the patterns of infection in wild populations and the effects of changes in temperature on the degree of infection. This work quantified Bd infection in a population of Pseudoeurycea leprosa in La Malinche National Park, Puebla, Mexico from June 2011 to September 2012. A total of 160 adult salamanders were experimentally exposed to temperatures of 10, 15, 20, 23, 25, or 28 ◦C for 10 weeks. The results of this study revealed that: (1) the population of P. leprosa in La Malinche National Park is infected with Bd throughout the year at a low prevalence of between 0 and 17%; (2) 20.6% of the salamanders that were Bd negative at the time of collection expressed chytridiomycosis after exposure to the experimental temperature treatments; (3) temperature was the cause of death in each treatment, with temperatures of 25 ◦C and 28 ◦C affecting the survival of P. leprosa; (4) the infection load in certain P. leprosa individuals exhibited cycles of increasing and decreasing zoospore genomic equivalents over time. All Rights Reserved © 2016 Universidad Nacional Autónoma de México, Instituto de Biología. This is an open access item distributed under the Creative Commons CC License BY-NC-ND 4.0."

While salamanders have a predominantly north-temperate distribution, one of the most stunning radiations of species occurred in the only group to significantly penetrate the tropics, the bolitoglossines. Biogeographic hypotheses for the group have evolved as a result of the discovery of new species and lineages, from approximately 30 species in a single genus in 1926 to nearly 300 species in 14 genera today. Molecular phylogenies provide an important tool with which to test long-standing biogeographic hypotheses. Divergence dating analyses and parametric biogeographic analyses, together with a changing understanding of the taxonomy of the bolitoglossines and new geological evidence from Mesoamerica, call into question several long-standing hypotheses related to the arrival and diversification of the bolitoglossines in Central and South America. We briefly review the geology of Mesoamerica, with an emphasis on regions of high salamander diversity, and discuss how molecular phylogenies and new species disco...

The complex geological history of Central America has been useful for understanding the processes influencing the distribution and diversity of multiple groups of organisms. Anurans are an excellent choice for such studies because they typically exhibit site fidelity and reduced movement. The objective of this work was to identify the impact of recognized geographic barriers on the genetic structure, phylogeographic patterns and divergence times of a wide-ranging amphibian species,Hyalinobatrachium fleischmanni. We amplified three mitochondrial regions, two coding (COI and ND1) and one ribosomal (16S), in samples collected from the coasts of Veracruz and Guerrero in Mexico to the humid forests of Chocó in Ecuador. We examined the biogeographic history of the species through spatial clustering analyses (Geneland and sPCA), Bayesian and maximum likelihood reconstructions, and spatiotemporal diffusion analysis. Our data suggest a Central American origin ofH. fleischmanniand two posterior independent dispersals towards North and South American regions. The first clade comprises individuals from Colombia, Ecuador, Panama and the sister speciesHyalinobatrachium tatayoi; this clade shows little structure, despite the presence of the Andes mountain range and the long distances between sampling sites. The second clade consists of individuals from Costa Rica, Nicaragua, and eastern Honduras with no apparent structure. The third clade includes individuals from western Honduras, Guatemala, and Mexico and displays deep population structure. Herein, we synthesize the impact of known geographic areas that act as barriers to glassfrog dispersal and demonstrated their effect of differentiatingH. fleischmanniinto three markedly isolated clades. The observed genetic structure is associated with an initial dispersal event from Central America followed by vicariance that likely occurred during the Pliocene. The southern samples are characterized by a very recent population expansion, likely related to sea-level and climatic oscillations during the Pleistocene, whereas the structure of the northern clade has probably been driven by dispersal through the Isthmus of Tehuantepec and isolation by the Motagua–Polochic–Jocotán fault system and the Mexican highlands.

A new species of Craugastor (Anura: Craugastoridae) from the montane rainforest of the Cordillera de Talamanca, Costa Rica. A new dirt frog of the Craugastor podiciferus Species Group is described from Costa Rica; it is restricted to elevations between 2330 and 2700 m a.s.l. in the montane rainforest of the Cordillera de Talamanca. Analysis of DNA sequences of the mitochondrial 16S rRNA (16S) and cytochrome oxidase I (COI) genes reveals a distinct lineage within the C. podiciferus Species Group. Additional morphological and morphometric analyses support the distinctiveness of this lineage that is described as a new species herein. The species is distinguished from other members of the C. podiciferus Species Group by its unique coloration: a violet-brown to blackish brown venter with white pigment forming blotches, and dark brown palmar surfaces with prominent white folds between subarticular tubercles in the adults. The genetic divergence of the species from other members of the C. podiciferus Species Group is signifcant (higher than 9.2% in 16S and 13.3% in COI). Although not closely related, it resembles C. podiciferus morphologically, a species that also inhabits montane rainforest. The discovery of this new species highlights the importance of montane rainforest as a center of species richness and endemism.

The recent decline in populations of European salamanders caused by the chytrid fungus Batrachochytrium salamandrivorans (Bsal) has generated worldwide concern, as it is a major threat to amphibians. Evaluation of the areas most suitable for the establishment of Bsal combined with analysis of the distribution of salamander species could be used to generate and implement biosecurity measures and protect biodiversity at sites with high salamander diversity. In this study, we identified the areas most suitable for the establishment of Bsal in Mexico. Mexico has the second-highest salamander species diversity in the world; thus, we identified areas moderately to highly suitable for the establishment of Bsal with high salamander diversity as potential hotspots for surveillance. Central and Southern Mexico were identified as high-risk zones, with 13 hotspots where 30% of Mexican salamander species occur, including range-restricted species and endangered species. We propose that these hotspots should be thoroughly monitored for the presence of Bsal to prevent the spread of the pathogen if it is introduced to the country.

The demise of amphibians? Rapid spread of disease is a hazard in our interconnected world. The chytrid fungus Batrachochytrium dendrobatidis was identified in amphibian populations about 20 years ago and has caused death and species extinction at a global scale. Scheele et al. found that the fungus has caused declines in amphibian populations everywhere except at its origin in Asia (see the Perspective by Greenberg and Palen). A majority of species and populations are still experiencing decline, but there is evidence of limited recovery in some species. The analysis also suggests some conditions that predict resilience. Science , this issue p. 1459 ; see also p. 1386

Species recovery after forest disturbance is a highly studied topic in the tropics, but considerable debate remains on the role of secondary forests as biodiversity repositories, especially regarding the functional and phylogenetic dimensions of biodiversity. Also, studies generally overlook how alpha and beta diversities interact to produce gamma diversity along successional gradients.We used a metacommunity approach to assess how species sorting (i.e., environmental filtering) and mass effect (i.e., source‐sink dynamics) affect 14 complementary metrics of amphibian taxonomic, functional, and phylogenetic diversity along a successional gradient in southern Mexico. As amphibians have narrow environmental tolerances and low dispersal capabilities, we expected that species sorting may be relatively more important than mass effect in structuring amphibian communities.Between 2010 and 2012, we sampled frogs, salamanders, and caecilians in 23 communities distributed in four successional stages: young (2–5 years old) and intermediate (13–28 years old) secondary forests, old‐growth forest fragments, and old‐growth continuous forest. We assessed 15 ecologically relevant functional traits per species and used a time‐calibrated molecular phylogeny.We recorded 1,672 individuals belonging to 30 species and 11 families. Supporting our expectations from the species sorting perspective, from the poorest (younger forests) to the best quality (continuous forest) scenarios, we observed (a) an increase in alpha diversity regardless of species abundances; (b) a clear taxonomic segregation across successional stages; (c) an increase in functional richness and dispersion; (d) an increase in mean phylogenetic distance and nearest taxon index; and (e) a reduction in mean nearest taxon distance. However, 10 species occurred in all successional stages, resulting in relatively low beta diversity. This supports a mass effect, where interpatch migrations contribute to prevent local extinctions and increase compositional similarity at the regional scale.Our findings indicate that amphibian metacommunities along forest successional gradients are mainly structured by species sorting, but mass effects may also play a role if high levels of forest cover are conserved in the region. In fact, secondary forests and forest fragments can potentially safeguard different aspects of amphibian diversity, but their long‐term conservation value requires preventing additional deforestation.

Author(s): Rovito, SM; Parra-Olea, G; Recuero, E; Wake, DB | Abstract: The Neotropical bolitoglossine salamanders represent an impressive adaptive radiation, comprising roughly 40% of global salamander species diversity. Despite decades of morphological studies and molecular work, a robust multilocus phylogenetic hypothesis based on DNA sequence data is lacking for the group. We estimated species trees based on multilocus nuclear and mitochondrial data for all major lineages within the bolitoglossines, and used our new phylogenetic hypothesis to test traditional biogeographical scenarios and hypotheses of morphological evolution in the group. In contrast to previous phylogenies, our results place all Central American endemic genera in a single clade and suggest that Central America played a critical role in the early biogeographical history of the group. The large, predominantly Mexican genus Pseudoeurycea is paraphyletic, and analyses of the nuclear data place two lineages of Pseudoeurycea as the sister group of Bolitoglossa. Our phylogeny reveals extensive homoplasy in morphological characters, which may be the result of truncation or alteration of a shared developmental trajectory. We used our phylogenetic results to revise the taxonomy of the genus Pseudoeurycea.

Author(s): Rovito, SM; Vasquez-Almazan, CR; Papenfuss, TJ; Parra-Olea, G; Wake, DB | Abstract: The cloud forests of Mesoamerica are notable for their high endemism, and plethodontid salamanders provide a striking example of divergence and microendemism across cloud forest blocks at a regional level. Salamanders that make use of arboreal bromeliad microhabitats in the cloud forest appear to be especially prone to divergence driven by natural habitat fragmentation, and are expected to show high endemism at small spatial scales. We use a multilocus dataset to investigate the biogeographic history and relationships among species of a small genus of salamander, Cryptotriton, restricted to the cloud forests of Nuclear Central America. We use a morphological data set along with a coalescent species delimitation method to reveal the presence of at least one undescribed species from an isolated cloud forest in eastern Guatemala. Biogeographic analyses show that Cryptotriton has a different biogeographic history than another clade of cloud forest-restricted salamanders in the same region, perhaps indicating that each genus restricted the spatial expansion and diversification of the other through preemptive occupancy. Our results suggest that isolation across relatively short geographic distances has led to range fragmentation and deep divergence between species. Exploration of remaining patches of cloud forest likely will continue to reveal undetected diversity.