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With the advent of sophisticated cameras, the urge to capture high-quality images has grown enormous. However, the noise contamination of the images results in substandard expectations among the people; thus, image denoising is an essential pre-processing step. While the algebraic image processing frameworks are sometimes inefficient for this denoising task as they may require processing of matrices of order equivalent to some power of the order of the original image, the neural network image processing frameworks are sometimes not robust as they require a lot of similar training samples. Thus, here we present a manifold-based noise filtering method that mainly exploits a few prominent singular vectors of the geodesics' Gramian matrix. Especially, the framework partitions an image, say that of size $n \times n$, into $n^2$ overlapping patches of known size such that one patch is centered at each pixel. Then, the prominent singular vectors, of the Gramian matrix of size $n^2 \times n^2$ of the geodesic distances computed over the patch space, are utilized to denoise the image. Here, the prominent singular vectors are revealed by efficient, but diverse, approximation techniques, rather than explicitly computing them using frameworks like Singular Value Decomposition (SVD) which encounters $\mathcal{O}(n^6)$ operations. Finally, we compare both computational time and the noise filtration performance of the proposed denoising algorithm with and without singular vector approximation techniques., Comment: 19 pages, 3 figures, submitted to ACM Transactions on Architecture and Code Optimization

Fraud detection is a challenging task due to the changing nature of fraud patterns over time and the limited availability of fraud examples to learn such sophisticated patterns. Thus, fraud detection with the aid of smart versions of machine learning (ML) tools is essential to assure safety. Fraud detection is a primary ML classification task; however, the optimum performance of the corresponding ML tool relies on the usage of the best hyperparameter values. Moreover, classification under imbalanced classes is quite challenging as it causes poor performance in minority classes, which most ML classification techniques ignore. Thus, we investigate four state-of-the-art ML techniques, namely, logistic regression, decision trees, random forest, and extreme gradient boost, that are suitable for handling imbalance classes to maximize precision and simultaneously reduce false positives. First, these classifiers are trained on two original benchmark unbalanced fraud detection datasets, namely, phishing website URLs and fraudulent credit card transactions. Then, three synthetically balanced datasets are produced for each original data set by implementing the sampling frameworks, namely, RandomUnderSampler, SMOTE, and SMOTEENN. The optimum hyperparameters for all the 16 experiments are revealed using the method RandomzedSearchCV. The validity of the 16 approaches in the context of fraud detection is compared using two benchmark performance metrics, namely, area under the curve of receiver operating characteristics (AUC ROC) and area under the curve of precision and recall (AUC PR). For both phishing website URLs and credit card fraud transaction datasets, the results indicate that extreme gradient boost trained on the original data shows trustworthy performance in the imbalanced dataset and manages to outperform the other three methods in terms of both AUC ROC and AUC PR., Comment: 10 pages, 10 figures, submitted to IEEE BigData 2022 conference

Financial markets are highly complex and volatile; thus, learning about such markets for the sake of making predictions is vital to make early alerts about crashes and subsequent recoveries. People have been using learning tools from diverse fields such as financial mathematics and machine learning in the attempt of making trustworthy predictions on such markets. However, the accuracy of such techniques had not been adequate until artificial neural network (ANN) frameworks were developed. Moreover, making accurate real-time predictions of financial time series is highly subjective to the ANN architecture in use and the procedure of training it. Long short-term memory (LSTM) is a member of the recurrent neural network family which has been widely utilized for time series predictions. Especially, we train two LSTMs with a known length, say $T$ time steps, of previous data and predict only one time step ahead. At each iteration, while one LSTM is employed to find the best number of epochs, the second LSTM is trained only for the best number of epochs to make predictions. We treat the current prediction as in the training set for the next prediction and train the same LSTM. While classic ways of training result in more error when the predictions are made further away in the test period, our approach is capable of maintaining a superior accuracy as training increases when it proceeds through the testing period. The forecasting accuracy of our approach is validated using three time series from each of the three diverse financial markets: stock, cryptocurrency, and commodity. The results are compared with those of an extended Kalman filter, an autoregressive model, and an autoregressive integrated moving average model., Comment: 20 pages, 7 figures, submitted to Expert Systems with Applications Journal

As quotidian use of sophisticated cameras surges, people in modern society are more interested in capturing fine-quality images. However, the quality of the images might be inferior to people's expectations due to the noise contamination in the images. Thus, filtering out the noise while preserving vital image features is an essential requirement. Current existing denoising methods have their own assumptions on the probability distribution in which the contaminated noise is sampled for the method to attain its expected denoising performance. In this paper, we utilize our recent Gramian-based filtering scheme to remove noise sampled from five prominent probability distributions from selected images. This method preserves image smoothness by adopting patches partitioned from the image, rather than pixels, and retains vital image features by performing denoising on the manifold underlying the patch space rather than in the image domain. We validate its denoising performance, using three benchmark computer vision test images applied to two state-of-the-art denoising methods, namely BM3D and K-SVD., Comment: 10 pages, 5 figures, submitted to 11-th International Conference on Data Science, Technology, and Applications. arXiv admin note: text overlap with arXiv:2010.07769

Classical methods of solving spatiotemporal dynamical systems include statistical approaches such as autoregressive integrated moving average, which assume linear and stationary relationships between systems' previous outputs. Development and implementation of linear methods are relatively simple, but they often do not capture non-linear relationships in the data. Thus, artificial neural networks (ANNs) are receiving attention from researchers in analyzing and forecasting dynamical systems. Recurrent neural networks (RNN), derived from feed-forward ANNs, use internal memory to process variable-length sequences of inputs. This allows RNNs to applicable for finding solutions for a vast variety of problems in spatiotemporal dynamical systems. Thus, in this paper, we utilize RNNs to treat some specific issues associated with dynamical systems. Specifically, we analyze the performance of RNNs applied to three tasks: reconstruction of correct Lorenz solutions for a system with a formulation error, reconstruction of corrupted collective motion trajectories, and forecasting of streamflow time series possessing spikes, representing three fields, namely, ordinary differential equations, collective motion, and hydrological modeling, respectively. We train and test RNNs uniquely in each task to demonstrate the broad applicability of RNNs in reconstruction and forecasting the dynamics of dynamical systems., Comment: 15 pages, 9 figures, submitted into "Chaos: An Interdisciplinary Journal of Nonlinear Science"

Learning dynamics of collectively moving agents such as fish or humans is an active field in research. Due to natural phenomena such as occlusion and change of illumination, the multi-object methods tracking such dynamics might lose track of the agents where that might result fragmentation in the constructed trajectories. Here, we present an extended deep autoencoder (DA) that we train only on fully observed segments of the trajectories by defining its loss function as the Hadamard product of a binary indicator matrix with the absolute difference between the outputs and the labels. The trajectories of the agents practicing collective motion is low-rank due to mutual interactions and dependencies between the agents that we utilize as the underlying pattern that our Hadamard deep autoencoder (HDA) codes during its training. The performance of our HDA is compared with that of a low-rank matrix completion scheme in the context of fragmented trajectory reconstruction., Comment: 21 Pages, 5 figures, submitted into Pattern Recognition

With the proliferation of sophisticated cameras in modern society, the demand for accurate and visually pleasing images is increasing. However, the quality of an image captured by a camera may be degraded by noise. Thus, some processing of images is required to filter out the noise without losing vital image features. Even though the current literature offers a variety of denoising methods, the fidelity and efficacy of their denoising are sometimes uncertain. Thus, here we propose a novel and computationally efficient image denoising method that is capable of producing accurate images. To preserve image smoothness, this method inputs patches partitioned from the image rather than pixels. Then, it performs denoising on the manifold underlying the patch-space rather than that in the image domain to better preserve the features across the whole image. We validate the performance of this method against benchmark image processing methods., Comment: 25 pages, 5 figures, submitted into Pattern Recognition

Nonlinear dimensionality reduction or, equivalently, the approximation of high-dimensional data using a low-dimensional nonlinear manifold is an active area of research. In this paper, we will present a thematically different approach to detect the existence of a low-dimensional manifold of a given dimension that lies within a set of bounds derived from a given point cloud. A matrix representing the appropriately defined distances on a low-dimensional manifold is low-rank, and our method is based on current techniques for recovering a partially observed matrix from a small set of fully observed entries that can be implemented as a low-rank Matrix Completion (MC) problem. MC methods are currently used to solve challenging real-world problems, such as image inpainting and recommender systems, and we leverage extent efficient optimization techniques that use a nuclear norm convex relaxation as a surrogate for non-convex and discontinuous rank minimization. Our proposed method provides several advantages over current nonlinear dimensionality reduction techniques, with the two most important being theoretical guarantees on the detection of low-dimensional embeddings and robustness to non-uniformity in the sampling of the manifold. We validate the performance of this approach using both a theoretical analysis as well as synthetic and real-world benchmark datasets., Comment: 12 pages, 7 figures, submitted to Pattern Recognition Journal

For many important network types (e.g., sensor networks in complex harsh environments and social networks) physical coordinate systems (e.g., Cartesian), and physical distances (e.g., Euclidean), are either difficult to discern or inapplicable. Accordingly, coordinate systems and characterizations based on hop-distance measurements, such as Topology Preserving Maps (TPMs) and Virtual-Coordinate (VC) systems are attractive alternatives to Cartesian coordinates for many network algorithms. Herein, we present an approach to recover geometric and topological properties of a network with a small set of distance measurements. In particular, our approach is a combination of shortest path (often called geodesic) recovery concepts and low-rank matrix completion, generalized to the case of hop-distances in graphs. Results for sensor networks embedded in 2-D and 3-D spaces, as well as a social networks, indicates that the method can accurately capture the network connectivity with a small set of measurements. TPM generation can now also be based on various context appropriate measurements or VC systems, as long as they characterize different nodes by distances to small sets of random nodes (instead of a set of global anchors). The proposed method is a significant generalization that allows the topology to be extracted from a random set of graph shortest paths, making it applicable in contexts such as social networks where VC generation may not be possible., Comment: 17 pages, 9 figures. arXiv admin note: substantial text overlap with arXiv:1712.10063

Existing dimensionality reduction methods are adept at revealing hidden underlying manifolds arising from high-dimensional data and thereby producing a low-dimensional representation. However, the smoothness of the manifolds produced by classic techniques over sparse and noisy data is not guaranteed. In fact, the embedding generated using such data may distort the geometry of the manifold and thereby produce an unfaithful embedding. Herein, we propose a framework for nonlinear dimensionality reduction that generates a manifold in terms of smooth geodesics that is designed to treat problems in which manifold measurements are either sparse or corrupted by noise. Our method generates a network structure for given high-dimensional data using a nearest neighbors search and then produces piecewise linear shortest paths that are defined as geodesics. Then, we fit points in each geodesic by a smoothing spline to emphasize the smoothness. The robustness of this approach for sparse and noisy datasets is demonstrated by the implementation of the method on synthetic and real-world datasets., Comment: 13 pages, 7 figures, submitted to Pattern Recognition

Animals live in groups to defend against predation and to obtain food. However, for some animals --- especially ones that spend long periods of time feeding --- there are costs if a group chooses to move on before their nutritional needs are satisfied. If the conflict between feeding and keeping up with a group becomes too large, it may be advantageous to some animals to split into subgroups of animals with similar nutritional needs. We model the costs and benefits of splitting by a herd of cows using a cost function (CF) that quantifies individual variation in hunger, desire to lie down, and predation risk. We model the costs associated with hunger and lying desire as the standard deviations of individuals within a group, and we model predation risk as an inverse exponential function of group size. We minimize the cost function over all plausible groups that can arise from a given herd and study the dynamics of group splitting. We explore our model using two examples: (1) we consider group switching and group fission in a herd of relatively homogeneous cows; and (2) we examine a herd with an equal number of adult males (larger animals) and adult females (smaller animals)., Comment: 19 pages, 10 figures

If a given behavior of a multi-agent system restricts the phase variable to a invariant manifold, then we define a phase transition as change of physical characteristics such as speed, coordination, and structure. We define such a phase transition as splitting an underlying manifold into two sub-manifolds with distinct dimensionalities around the singularity where the phase transition physically exists. Here, we propose a method of detecting phase transitions and splitting the manifold into phase transitions free sub-manifolds. Therein, we utilize a relationship between curvature and singular value ratio of points sampled in a curve, and then extend the assertion into higher-dimensions using the shape operator. Then we attest that the same phase transition can also be approximated by singular value ratios computed locally over the data in a neighborhood on the manifold. We validate the phase transitions detection method using one particle simulation and three real world examples., Comment: 17 pages, 9 figures, accepted in Journal of Mathematical Bioscience and Engineering

While the existence of low-dimensional embedding manifolds has been shown in patterns of collective motion, the current battery of nonlinear dimensionality reduction methods are not amenable to the analysis of such manifolds. This is mainly due to the necessary spectral decomposition step, which limits control over the mapping from the original high-dimensional space to the embedding space. Here, we propose an alternative approach that demands a two-dimensional embedding which topologically summarizes the high-dimensional data. In this sense, our approach is closely related to the construction of one-dimensional principal curves that minimize orthogonal error to data points subject to smoothness constraints. Specifically, we construct a two-dimensional principal manifold directly in the high-dimensional space using cubic smoothing splines, and define the embedding coordinates in terms of geodesic distances. Thus, the mapping from the high-dimensional data to the manifold is defined in terms of local coordinates. Through representative examples, we show that compared to existing nonlinear dimensionality reduction methods, the principal manifold retains the original structure even in noisy and sparse datasets. The principal manifold finding algorithm is applied to configurations obtained from a dynamical system of multiple agents simulating a complex maneuver called predator mobbing, and the resulting two-dimensional embedding is compared with that of a well-established nonlinear dimensionality reduction method., Comment: 19 pages, 13 figures, journal article

Collective motion of animal groups often undergoes changes due to perturbations. In a topological sense, we describe these changes as switching between low-dimensional embedding manifolds underlying a group of evolving agents. To characterize such manifolds, first we introduce a simple mapping of agents between time-steps. Then, we construct a novel metric which is susceptible to variations in the collective motion, thus revealing distinct underlying manifolds. The method is validated through three sample scenarios simulated using a Vicsek model, namely switching of speed, coordination, and structure of a group. Combined with a dimensionality reduction technique that is used to infer the dimensionality of the embedding manifold, this approach provides an effective model-free framework for the analysis of collective behavior across animal species., Comment: 12 pages, 6 figures, journal article