22 results on '"Gardiner JD"'
Search Results
2. Evolutionary versatility of the avian neck
- Author
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Marek, RD, Falkingham, PL, Benson, RBJ, Gardiner, JD, Maddox, TW, Bates, KT, Marek, RD, Falkingham, PL, Benson, RBJ, Gardiner, JD, Maddox, TW, and Bates, KT
- Abstract
Bird necks display unparalleled levels of morphological diversity compared to other vertebrates, yet it is unclear what factors have structured this variation. Using three-dimensional geometric morphometrics and multivariate statistics, we show that the avian cervical column is a hierarchical morpho-functional appendage, with varying magnitudes of ecologically driven osteological variation at different scales of organization. Contrary to expectations given the widely varying ecological functions of necks in different species, we find that regional modularity of the avian neck is highly conserved, with an overall structural blueprint that is significantly altered only by the most mechanically demanding ecological functions. Nevertheless, the morphologies of vertebrae within subregions of the neck show more prominent signals of adaptation to ecological pressures. We also find that both neck length allometry and the nature of neck elongation in birds are different from other vertebrates. In contrast with mammals, neck length scales isometrically with head mass and, contrary to previous work, we show that neck elongation in birds is achieved predominantly by increasing vertebral lengths rather than counts. Birds therefore possess a cervical spine that may be unique in its versatility among extant vertebrates, one that, since the origin of flight, has adapted to function as a surrogate forelimb in varied ecological niches.
- Published
- 2021
3. Locomotor preferences in terrestrial vertebrates: An online crowdsourcing approach to data collection
- Author
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Lees, J, Gardiner, JD, Usherwood, J, and Nudds, R
- Subjects
Mammals ,Video Recording ,Walking ,Models, Theoretical ,Article ,Biomechanical Phenomena ,Birds ,Vertebrates ,Animals ,Crowdsourcing ,General ,human activities ,Gait ,Locomotion ,Software - Abstract
Understanding how animals move within their environment is a burgeoning field of research. Despite\ud this, relatively basic data, such as the locomotor speeds that animals choose to walk at in the wild,\ud are sparse. If animals choose to walk with dynamic similarity, they will move at equal dimensionless\ud speeds, represented by Froude number (Fr). Fr may be interpreted from simple limb kinematics\ud obtained from video data. Here, using Internet videos, limb kinematics were measured in 112 bird and\ud mammal species weighing between 0.61 and 5400 kg. This novel method of data collection enabled\ud the determination of kinematics for animals walking at their self-selected speeds without the need for\ud exhaustive fieldwork. At larger sizes, both birds and mammals prefer to walk at slower relative speeds\ud and relative stride frequencies, as preferred Fr decreased in larger species, indicating that Fr may not be\ud a good predictor of preferred locomotor speeds. This may result from the observation that the minimum\ud cost of transport is approached at lower Fr in larger species. Birds walk with higher duty factors, lower\ud stride frequencies and longer stance times compared to mammals at self-selected speeds. The trend\ud towards lower preferred Fr is also apparent in extinct vertebrate species.
- Published
- 2015
4. The kinematics of amblypygid (Arachnida) pedipalps during predation: extreme elongation in raptorial appendages does not result in a proportionate increase in reach and closing speed.
- Author
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McLean CJ, Brassey CA, Seiter M, Garwood RJ, and Gardiner JD
- Subjects
- Humans, Animals, Predatory Behavior, Biomechanical Phenomena, Arachnida, Spiders anatomy & histology
- Abstract
The link between form and function is key to understanding the evolution of unique and/or extreme morphologies. Amblypygids, or whip spiders, are arachnids that often have highly elongated spined pedipalps. These limbs are used to strike at, and secure, prey before processing by the chelicerae. Amblypygi pedipalps are multifunctional, however, being used in courtship and contest, and vary greatly in form between species. Increased pedipalp length may improve performance during prey capture, but length could also be influenced by factors including territorial contest and sexual selection. Here, for the first time, we used high-speed videography and manual tracking to investigate kinematic differences in prey capture between amblypygid species. Across six morphologically diverse species, spanning four genera and two families, we created a total dataset of 86 trials (9-20 per species). Prey capture kinematics varied considerably between species, with differences being expressed in pedipalp joint angle ranges. In particular, maximum reach ratio did not remain constant with total pedipalp length, as geometric scaling would predict, but decreased with longer pedipalps. This suggests that taxa with the most elongated pedipalps do not deploy their potential length advantage to proportionally increase reach. Therefore, a simple mechanical explanation of increased reach does not sufficiently explain pedipalp elongation. We propose other factors to help explain this phenomenon, such as social interactions or sexual selection, which would produce an evolutionary trade-off in pedipalp length between prey capture performance and other behavioural and/or anatomical pressures., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2024. Published by The Company of Biologists Ltd.)
- Published
- 2024
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5. Association of Combined Focal 22q11.22 Deletion and IKZF1 Alterations With Outcomes in Childhood Acute Lymphoblastic Leukemia.
- Author
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Mangum DS, Meyer JA, Mason CC, Shams S, Maese LD, Gardiner JD, Downie JM, Pei D, Cheng C, Gleason A, Luo M, Pui CH, Aplenc R, Hunger SP, Loh M, Greaves M, Trede N, Raetz E, Frazer JK, Mullighan CG, Engel ME, Miles RR, Rabin KR, and Schiffman JD
- Subjects
- Child, Cohort Studies, Female, Gene Deletion, Humans, Ikaros Transcription Factor genetics, Male, Prognosis, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma genetics, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics
- Abstract
Importance: Alterations in the IKZF1 gene drive B-cell acute lymphoblastic leukemia (B-ALL) but are not routinely used to stratify patients by risk because of inconsistent associations with outcomes. We describe a novel deletion in 22q11.22 that was consistently associated with very poor outcomes in patients with B-ALL with IKZF1 alterations., Objective: To determine whether focal deletions within the λ variable chain region in chromosome 22q11.22 were associated with patients with B-ALL with IKZF1 alterations with the highest risk of relapse and/or death., Design, Setting, and Participants: This cohort study included 1310 primarily high-risk pediatric patients with B-ALL who were taken from 6 independent clinical cohorts, consisting of 3 multicenter cohorts (AALL0232 [2004-2011], P9906 [2000-2003], and patients with Down syndrome who were pooled from national and international studies) and 3 single-institution cohorts (University of Utah [Salt Lake City], Children's Hospital of Philadelphia [Philadelphia, Pennsylvania], and St. Jude Children's Hospital [Memphis, Tennessee]). Data analysis began in 2011 using patients from the older studies first, and data analysis concluded in 2021., Exposures: Focal 22q11.22 deletions., Main Outcomes and Measures: Event-free and overall survival was investigated. The hypothesis that 22q11.22 deletions stratified the prognostic effect of IKZF1 alterations was formulated while investigating nearby deletions in VPREB1 in 2 initial cohorts (n = 270). Four additional cohorts were then obtained to further study this association (n = 1040)., Results: This study of 1310 patients with B-ALL (717 male [56.1%] and 562 female patients [43.9%]) found that focal 22q11.22 deletions are frequent (518 of 1310 [39.5%]) in B-ALL and inconsistent with physiologic V(D)J recombination. A total of 299 of 1310 patients with B-ALL had IKZF1 alterations. Among patients with IKZF1 alterations, more than half shared concomitant focal 22q11.22 deletions (159 of 299 [53.0%]). Patients with combined IKZF1 alterations and 22q11.22 deletions had worse outcomes compared with patients with IKZF1 alterations and wild-type 22q11.22 alleles in every cohort examined (combined cohorts: 5-year event-free survival rates, 43.3% vs 68.5%; hazard ratio [HR], 2.18; 95% CI, 1.54-3.07; P < .001; 5-year overall survival rates, 66.9% vs 83.9%; HR, 2.05; 95% CI, 1.32-3.21; P = .001). While 22q11.22 deletions were not prognostic in patients with wild-type IKZF1 , concomitant 22q11.22 deletions in patients with IKZF1 alterations stratified outcomes across additional risk groups, including patients who met the IKZF1plus criteria, and maintained independent significance in multivariate analysis for event-free survival (HR, 2.05; 95% CI, 1.27-3.29; P = .003) and overall survival (HR, 1.83; 95% CI, 1.01-3.34; P = .05)., Conclusions and Relevance: This cohort study suggests that 22q11.22 deletions identify patients with B-ALL and IKZF1 alterations who have very poor outcomes and may offer a new genetic biomarker to further refine B-ALL risk stratification and treatment strategies.
- Published
- 2021
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6. Chromosome 10q26-driven age-related macular degeneration is associated with reduced levels of HTRA1 in human retinal pigment epithelium.
- Author
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Williams BL, Seager NA, Gardiner JD, Pappas CM, Cronin MC, Amat di San Filippo C, Anstadt RA, Liu J, Toso MA, Nichols L, Parnell TJ, Eve JR, Heinz S, Hayes MGB, Bartel PL, Zouache MA, Richards BT, and Hageman GS
- Subjects
- Choroid metabolism, Genetic Variation, High-Temperature Requirement A Serine Peptidase 1 genetics, Humans, Linkage Disequilibrium, RNA, Messenger genetics, RNA, Messenger metabolism, Retina metabolism, Genetic Predisposition to Disease, High-Temperature Requirement A Serine Peptidase 1 metabolism, Macular Degeneration genetics, Retinal Pigment Epithelium metabolism
- Abstract
Genome-wide association studies have identified the chromosome 10q26 (Chr10) locus, which contains the age-related maculopathy susceptibility 2 ( ARMS2 ) and high temperature requirement A serine peptidase 1 ( HTRA1 ) genes, as the strongest genetic risk factor for age-related macular degeneration (AMD) [L.G. Fritsche et al., Annu. Rev. Genomics Hum. Genet. 15, 151-171, (2014)]. To date, it has been difficult to assign causality to any specific single nucleotide polymorphism (SNP), haplotype, or gene within this region because of high linkage disequilibrium among the disease-associated variants [J. Jakobsdottir et al. Am. J. Hum. Genet. 77, 389-407 (2005); A. Rivera et al. Hum. Mol. Genet. 14, 3227-3236 (2005)]. Here, we show that HTRA1 messenger RNA (mRNA) is reduced in retinal pigment epithelium (RPE) but not in neural retina or choroid tissues derived from human donors with homozygous risk at the 10q26 locus. This tissue-specific decrease is mediated by the presence of a noncoding, cis-regulatory element overlapping the ARMS2 intron, which contains a potential Lhx2 transcription factor binding site that is disrupted by risk variant rs36212733. HtrA1 protein increases with age in the RPE-Bruch's membrane (BM) interface in Chr10 nonrisk donors but fails to increase in donors with homozygous risk at the 10q26 locus. We propose that HtrA1, an extracellular chaperone and serine protease, functions to maintain the optimal integrity of the RPE-BM interface during the aging process and that reduced expression of HTRA1 mRNA and protein in Chr10 risk donors impairs this protective function, leading to increased risk of AMD pathogenesis. HtrA1 augmentation, not inhibition, in high-risk patients should be considered as a potential therapy for AMD., Competing Interests: Competing interest statement: G.S.H. is a shareholder, consultant, and cofounder of Voyant Biotherapeutics, LLC. G.S.H., C.M.P., B.T.R., and B.L.W. are inventors on patents and patent applications owned by the University of Utah., (Copyright © 2021 the Author(s). Published by PNAS.)
- Published
- 2021
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7. Evolutionary versatility of the avian neck.
- Author
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Marek RD, Falkingham PL, Benson RBJ, Gardiner JD, Maddox TW, and Bates KT
- Subjects
- Animals, Cervical Vertebrae, Mammals, Neck, Phylogeny, Biological Evolution, Birds
- Abstract
Bird necks display unparalleled levels of morphological diversity compared to other vertebrates, yet it is unclear what factors have structured this variation. Using three-dimensional geometric morphometrics and multivariate statistics, we show that the avian cervical column is a hierarchical morpho-functional appendage, with varying magnitudes of ecologically driven osteological variation at different scales of organization. Contrary to expectations given the widely varying ecological functions of necks in different species, we find that regional modularity of the avian neck is highly conserved, with an overall structural blueprint that is significantly altered only by the most mechanically demanding ecological functions. Nevertheless, the morphologies of vertebrae within subregions of the neck show more prominent signals of adaptation to ecological pressures. We also find that both neck length allometry and the nature of neck elongation in birds are different from other vertebrates. In contrast with mammals, neck length scales isometrically with head mass and, contrary to previous work, we show that neck elongation in birds is achieved predominantly by increasing vertebral lengths rather than counts. Birds therefore possess a cervical spine that may be unique in its versatility among extant vertebrates, one that, since the origin of flight, has adapted to function as a surrogate forelimb in varied ecological niches.
- Published
- 2021
- Full Text
- View/download PDF
8. 3D genital shape complexity in female marine mammals.
- Author
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Orbach DN, Brassey CA, Gardiner JD, and Brennan PLR
- Abstract
Comparisons of 3D shapes have recently been applied to diverse anatomical structures using landmarking techniques. However, discerning evolutionary patterns can be challenging for structures lacking homologous landmarks. We used alpha shape analyses to quantify vaginal shape complexity in 40 marine mammal specimens including cetaceans, pinnipeds, and sirenians. We explored phylogenetic signal and the potential roles of natural and sexual selection on vaginal shape evolution. Complexity scores were consistent with qualitative observations. Cetaceans had a broad range of alpha complexities, while pinnipeds were comparatively simple and sirenians were complex. Intraspecific variation was found. Three-dimensional surface heat maps revealed that shape complexity was driven by invaginations and protrusions of the vaginal wall. Phylogenetic signal was weak and metrics of natural selection (relative neonate size) and sexual selection (relative testes size, sexual size dimorphism, and penis morphology) did not explain vaginal complexity patterns. Additional metrics, such as penile shape complexity, may yield interesting insights into marine mammal genital coevolution. We advocate for the use of alpha shapes to discern patterns of evolution that would otherwise not be possible in 3D anatomical structures lacking homologous landmarks., Competing Interests: None declared., (© 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2021
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9. Postcopulatory sexual selection and the evolution of shape complexity in the carnivoran baculum.
- Author
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Brassey CA, Behnsen J, and Gardiner JD
- Subjects
- Animals, Biological Evolution, Copulation, Male, Bone and Bones, Carnivora, Mating Preference, Animal, Penis anatomy & histology
- Abstract
The baculum is an enigmatic bone within the mammalian glans penis, and the driving forces behind its often bizarre shape have captivated evolutionary biologists for over a century. Hypotheses for the function of the baculum include aiding in intromission, stimulating females and assisting with prolonged mating. Previous attempts to test these hypotheses have focused on the gross size of the baculum and have failed to reach a consensus. We conducted three-dimensional imaging and apply a new method to quantify three-dimensional shape complexity in the carnivoran baculum. We show that socially monogamous species are evolving towards complex-shaped bacula, whereas group-living species are evolving towards simple bacula. Overall three-dimensional baculum shape complexity is not related to relative testes mass, but tip complexity is higher in induced ovulators and species engaging in prolonged copulation. Our study provides evidence of postcopulatory sexual selection pressures driving three-dimensional shape complexity in the carnivore baculum.
- Published
- 2020
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10. Keep your head down: Maintaining gait stability in challenging conditions.
- Author
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Thomas NDA, Gardiner JD, Crompton RH, and Lawson R
- Subjects
- Accidental Falls, Adult, Female, Head, Humans, Male, Vision, Ocular physiology, Young Adult, Fixation, Ocular, Posture, Visual Fields, Walking physiology, Walking Speed
- Abstract
Background: Peripheral vision often deteriorates with age, disrupting our ability to maintain normal locomotion. Laboratory based studies have shown that lower visual field loss, in particular, is associated with changes in gaze and gait behaviour whilst walking and this, in turn, increases the risk of falling in the elderly. Separately, gaze and gait behaviours change and fall risk increases when walking over complex surfaces. It seems probable, but has not yet been established, that these challenges to stability interact., Research Question: How does loss of the lower visual field affect gaze and gait behaviour whilst walking on a variety of complex surfaces outside of the laboratory? Specifically, is there a synergistic interaction between the effects on behaviour of blocking the lower visual field and increased surface complexity?, Methods: We compared how full vision versus simulated lower visual field loss affected a diverse range of behavioural measures (head pitch angle, eye angle, muscle coactivation, gait speed and walking smoothness as measured by harmonic ratios) in young participants. Participants walked over a range of surfaces of different complexity, including pavements, grass, steps and pebbles., Results: In both full vision and blocked lower visual field conditions, surface complexity influenced gaze and gait behaviour. For example, more complex surfaces were shown to be associated with lowered head pitch angles, increased leg muscle coactivation, reduced gait speed and decreased walking smoothness. Relative to full vision, blocking the lower visual field caused a lowering of head pitch, especially for more complex surfaces. However, crucially, muscle coactivation, gait speed and walking smoothness did not show a significant change between full vision and blocked lower visual field conditions. Finally, head pitch angle, muscle coactivation, gait speed and walking smoothness were all correlated highly with each other., Significance: Our study showed that blocking the lower visual field did not significantly change muscle coactivation, gait speed or walking smoothness. This suggests that young people cope well when walking with a blocked lower visual field, making minimal behavioural changes. Surface complexity had a greater effect on gaze and gait behaviour than blocking the lower visual field. Finally, head pitch angle was the only measure that showed a significant synergistic interaction between surface complexity and blocking the lower visual field. Together our results indicate that, first, a range of changes occur across the body when people walk over more complex surfaces and, second, that a relatively simple behavioural change (to gaze) suffices to maintain normal gait when the lower visual field is blocked, even in more challenging environments. Future research should assess whether young people cope as effectively when several impairments are simulated, representative of the comorbidities found with age., (Copyright © 2020 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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11. Physical and perceptual measures of walking surface complexity strongly predict gait and gaze behaviour.
- Author
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Thomas NDA, Gardiner JD, Crompton RH, and Lawson R
- Subjects
- Adolescent, Adult, Behavior, Biomechanical Phenomena, Female, Humans, Male, Principal Component Analysis, Risk Factors, Young Adult, Fixation, Ocular, Gait physiology, Perception physiology, Postural Balance, Walking physiology
- Abstract
Background: Walking surfaces vary in complexity and are known to affect stability and fall risk whilst walking. However, existing studies define surfaces through descriptions only., Objective: This study used a multimethod approach to measure surface complexity in order to try to characterise surfaces with respect to locomotor stability., Methods: We assessed how physical measurements of walking surface complexity compared to participant's perceptual ratings of the effect of complexity on stability. Physical measurements included local slope measures from the surfaces themselves and shape complexity measured using generated surface models. Perceptual measurements assessed participants' perceived stability and surface roughness using Likert scales. We then determined whether these measurements were indicative of changes to stability as assessed by behavioural changes including eye angle, head pitch angle, muscle coactivation, walking speed and walking smoothness., Results: Physical and perceptual measures were highly correlated, with more complex surfaces being perceived as more challenging to stability. Furthermore, complex surfaces, as defined from both these measurements, were associated with lowered head pitch, increased muscle coactivation and reduced walking smoothness., Significance: Our findings show that walking surfaces defined as complex, based on physical measurements, are perceived as more challenging to our stability. Furthermore, certain behavioural measures relate better to these perceptual and physical measures than others. Crucially, for the first time this study defined walking surfaces objectively rather than just based on subjective descriptions. This approach could enable future researchers to compare results across walking surface studies. Moreover, perceptual measurements, which can be collected easily and efficiently, could be used as a proxy for estimating behavioural responses to different surfaces. This could be particularly valuable when determining risk of instability when walking for individuals with compromised stability., (Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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12. Look out: an exploratory study assessing how gaze (eye angle and head angle) and gait speed are influenced by surface complexity.
- Author
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Thomas NDA, Gardiner JD, Crompton RH, and Lawson R
- Abstract
Background: Most research investigating the connection between walking and visual behaviour has assessed only eye movements (not head orientation) in respect to locomotion over smooth surfaces in a laboratory. This is unlikely to reflect gaze changes found over the complex surfaces experienced in the real world, especially given that eye and head movements have rarely been assessed simultaneously., Research Question: How does gaze (eye and head) angle and gait speed change when walking over surfaces of different complexity?, Methods: In this exploratory study, we used a mobile eye tracker to monitor eye movements and inertia measurement unit sensors (IMUs) to measure head angle whilst subjects ( n = 11) walked over surfaces with different complexities both indoors and outdoors. Gait speed was recorded from ankle IMUs., Results: Overall, mean gaze angle was lowest over the most complex surface and this surface also elicited the slowest mean gait speed. The head contributed increasingly to the lowering of gaze with increased surface complexity. Less complex surfaces showed no significant difference between gaze and gait behaviour., Significance: This study supports previous research showing that increased surface complexity is an important factor in determining gaze and gait behaviour. Moreover, it provides the novel finding that head movements provide important contributions to gaze location. Our future research aims are to further assess the role of the head in determining gaze location during locomotion across a greater range of complex surfaces to determine the key surface characteristics that influence gaze during gait., Competing Interests: The authors declare there are no competing interests., (©2020 Thomas et al.)
- Published
- 2020
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13. Alpha shapes: determining 3D shape complexity across morphologically diverse structures.
- Author
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Gardiner JD, Behnsen J, and Brassey CA
- Subjects
- Animals, Biological Evolution, Fractals, Male, Imaging, Three-Dimensional, Penis anatomy & histology
- Abstract
Background: Following recent advances in bioimaging, high-resolution 3D models of biological structures are now generated rapidly and at low-cost. To use this data to address evolutionary and ecological questions, an array of tools has been developed to conduct shape analysis and quantify topographic complexity. Here we focus particularly on shape techniques applied to irregular-shaped objects lacking clear homologous landmarks, and propose a new 'alpha-shapes' method for quantifying 3D shape complexity., Methods: We apply alpha-shapes to quantify shape complexity in the mammalian baculum as an example of a morphologically disparate structure. Micro- computed-tomography (μCT) scans of bacula were conducted. Bacula were binarised and converted into point clouds. Following application of a scaling factor to account for absolute size differences, a suite of alpha-shapes was fitted per specimen. An alpha shape is formed from a subcomplex of the Delaunay triangulation of a given set of points, and ranges in refinement from a very coarse mesh (approximating convex hulls) to a very fine fit. 'Optimal' alpha was defined as the refinement necessary in order for alpha-shape volume to equal CT voxel volume, and was taken as a metric of overall 'complexity'., Results: Our results show that alpha-shapes can be used to quantify interspecific variation in shape 'complexity' within biological structures of disparate geometry. The 'stepped' nature of alpha curves is informative with regards to the contribution of specific morphological features to overall 'complexity'. Alpha-shapes agrees with other measures of complexity (dissection index, Dirichlet normal energy) in identifying ursid bacula as having low shape complexity. However, alpha-shapes estimates mustelid bacula as being most complex, contrasting with other shape metrics. 3D fractal dimension is identified as an inappropriate metric of complexity when applied to bacula., Conclusions: Alpha-shapes is used to calculate 'optimal' alpha refinement as a proxy for shape 'complexity' without identifying landmarks. The implementation of alpha-shapes is straightforward, and is automated to process large datasets quickly. We interpret alpha-shapes as being particularly sensitive to concavities in surface topology, potentially distinguishing it from other shape complexity metrics. Beyond genital shape, the alpha-shapes technique holds considerable promise for new applications across evolutionary, ecological and palaeoecological disciplines.
- Published
- 2018
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14. Testing hypotheses for the function of the carnivoran baculum using finite-element analysis.
- Author
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Brassey CA, Gardiner JD, and Kitchener AC
- Subjects
- Animals, Biomechanical Phenomena, Bone and Bones, Carnivora physiology, Female, Finite Element Analysis, Male, Vagina, X-Ray Microtomography, Carnivora anatomy & histology, Copulation, Penis anatomy & histology
- Abstract
The baculum (os penis) is a mineralized bone within the glans of the mammalian penis and is one of the most morphologically diverse structures in the mammal skeleton. Recent experimental work provides compelling evidence for sexual selection shaping the baculum, yet the functional mechanism by which this occurs remains unknown. Previous studies have tested biomechanical hypotheses for the role of the baculum based on simple metrics such as length and diameter, ignoring the wealth of additional shape complexity present. For the first time, to our knowledge, we apply a computational simulation approach (finite-element analysis; FEA) to quantify the three-dimensional biomechanical performance of carnivoran bacula ( n = 74) based upon high-resolution micro-computed tomography scans. We find a marginally significant positive correlation between sexual size dimorphism and baculum stress under compressive loading, counter to the 'vaginal friction' hypothesis of bacula becoming more robust to overcome resistance during initial intromission. However, a highly significant negative relationship exists between intromission duration and baculum stress under dorsoventral bending. Furthermore, additional FEA simulations confirm that the presence of a ventral groove would reduce deformation of the urethra. We take this as evidence in support of the 'prolonged intromission' hypothesis, suggesting the carnivoran baculum has evolved in response to pressures on the duration of copulation and protection of the urethra., (© 2018 The Authors.)
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- 2018
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15. C/EBPβ-1 promotes transformation and chemoresistance in Ewing sarcoma cells.
- Author
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Gardiner JD, Abegglen LM, Huang X, Carter BE, Schackmann EA, Stucki M, Paxton CN, Lor Randall R, Amatruda JF, Putnam AR, Kovar H, Lessnick SL, and Schiffman JD
- Subjects
- Aldehyde Dehydrogenase genetics, Aldehyde Dehydrogenase metabolism, Aldehyde Dehydrogenase 1 Family, Antineoplastic Agents pharmacology, CCAAT-Enhancer-Binding Protein-beta metabolism, Cell Line, Tumor, Cell Proliferation, Cell Survival genetics, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Humans, Oncogene Proteins, Fusion genetics, Oncogene Proteins, Fusion metabolism, Protein Binding, Proto-Oncogene Protein c-fli-1 genetics, Proto-Oncogene Protein c-fli-1 metabolism, RNA-Binding Protein EWS genetics, RNA-Binding Protein EWS metabolism, Retinal Dehydrogenase, Sarcoma, Ewing drug therapy, Sarcoma, Ewing metabolism, CCAAT-Enhancer-Binding Protein-beta genetics, Cell Transformation, Neoplastic genetics, Drug Resistance, Neoplasm genetics, Sarcoma, Ewing genetics, Sarcoma, Ewing pathology
- Abstract
CEBPB copy number gain in Ewing sarcoma was previously shown to be associated with worse clinical outcome compared to tumors with normal CEBPB copy number, although the mechanism was not characterized. We employed gene knockdown and rescue assays to explore the consequences of altered CEBPB gene expression in Ewing sarcoma cell lines. Knockdown of EWS-FLI1 expression led to a decrease in expression of all three C/EBPβ isoforms while re-expression of EWS-FLI1 rescued C/EBPβ expression. Overexpression of C/EBPβ-1, the largest of the three C/EBPβ isoforms, led to a significant increase in colony formation when cells were grown in soft agar compared to empty vector transduced cells. In addition, depletion of C/EBPβ decreased colony formation, and re-expression of either C/EBPβ-1 or C/EBPβ-2 rescued the phenotype. We identified the cancer stem cell marker ALDH1A1 as a target of C/EBPβ in Ewing sarcoma. Furthermore, increased expression of C/EBPβ led to resistance to chemotherapeutic agents. In summary, we have identified CEBPB as an oncogene in Ewing sarcoma. Overexpression of C/EBPβ-1 increases transformation, upregulates expression of the cancer stem cell marker ALDH1A1, and leads to chemoresistance.
- Published
- 2017
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16. An advanced shape-fitting algorithm applied to quadrupedal mammals: improving volumetric mass estimates.
- Author
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Brassey CA and Gardiner JD
- Abstract
Body mass is a fundamental physical property of an individual and has enormous bearing upon ecology and physiology. Generating reliable estimates for body mass is therefore a necessary step in many palaeontological studies. Whilst early reconstructions of mass in extinct species relied upon isolated skeletal elements, volumetric techniques are increasingly applied to fossils when skeletal completeness allows. We apply a new 'alpha shapes' (α-shapes) algorithm to volumetric mass estimation in quadrupedal mammals. α-shapes are defined by: (i) the underlying skeletal structure to which they are fitted; and (ii) the value α, determining the refinement of fit. For a given skeleton, a range of α-shapes may be fitted around the individual, spanning from very coarse to very fine. We fit α-shapes to three-dimensional models of extant mammals and calculate volumes, which are regressed against mass to generate predictive equations. Our optimal model is characterized by a high correlation coefficient and mean square error (r (2)=0.975, m.s.e.=0.025). When applied to the woolly mammoth (Mammuthus primigenius) and giant ground sloth (Megatherium americanum), we reconstruct masses of 3635 and 3706 kg, respectively. We consider α-shapes an improvement upon previous techniques as resulting volumes are less sensitive to uncertainties in skeletal reconstructions, and do not require manual separation of body segments from skeletons.
- Published
- 2015
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17. Excepting Myotis capaccinii, the wings' contribution to take-off performance does not correlate with foraging ecology in six species of insectivorous bat.
- Author
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Gardiner JD, Altringham JD, Papadatou E, and Nudds RL
- Abstract
Take-off in bats is separated into two distinct phases: an initial jump and a subsequent wing powered acceleration. Here, using footage from a high-speed camera, the first comparative study of the performance during the wing induced phase of take-off in six insectivorous bat species is described. Despite distinct differences in foraging strategy, the mass specific power generated by the bats during wing induced take-off did not differ between species, with the exception of Myotis capaccinii. This suggests that differences in take-off performance may only be evident in bats that exhibit particularly unusual foraging strategies, such as the trawling behaviour of M. capaccinii - with differences in the remaining species only manifesting in subtler aspects of flight performance such as agility or manoeuvrability. The poorer take-off performance of M. capaccinii could be related to either a reduction in wing-stroke amplitude to stop the wings hitting the water's surface during foraging or perhaps an effect of having very large feet. No scaling relationship between body mass and mass-specific take-off power was found, which supports earlier research on birds and insects, suggesting that the mass-specific muscle power available for flight is broadly similar across a large range of body sizes and species., (© 2014. Published by The Company of Biologists Ltd.)
- Published
- 2014
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18. Exploring tree species colonization potentials using a spatially explicit simulation model: implications for four oaks under climate change.
- Author
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Prasad AM, Gardiner JD, Iverson LR, Matthews SN, and Peters M
- Subjects
- Computer Simulation, Ecosystem, Phylogeography, Population Dynamics, Time Factors, Climate Change, Models, Biological, Quercus growth & development
- Abstract
Climate change impacts tree species differentially by exerting unique pressures and altering their suitable habitats. We previously predicted these changes in suitable habitat for current and future climates using a species habitat model (DISTRIB) in the eastern United States. Based on the accuracy of the model, the species assemblages should eventually reflect the new quasi-equilibrium suitable habitats (~2100) after accounting for the lag in colonization. However, it is an open question if and when these newly suitable habitats will be colonized under current fragmented landscapes and realistic migration rates. To evaluate this, we used a spatially explicit cell-based model (SHIFT) that estimates colonization potentials under current fragmented habitats and several estimates of historical migration rates at a 1 km resolution. Computation time, which was previously the biggest constraint, was overcome by a novel application of convolution and Fast Fourier Transforms. SHIFT outputs, when intersected with future suitable habitats predicted by DISTRIB, allow assessment of colonization potential under future climates. In this article, we show how our approach can be used to screen multiple tree species for their colonization potentials under climate change. In particular, we use the DISTRIB and SHIFT models in combination to assess if the future dominant forest types in the north will really be dominated by oaks, as modelled via DISTRIB. Even under optimistic scenarios, we conclude that only a small fraction of the suitable habitats of oaks predicted by DISTRIB is likely to be occupied within 100 years, and this will be concentrated in the first 10-20 km from the current boundary. We also show how DISTRIB and SHIFT can be used to evaluate the potential for assisted migration of vulnerable tree species, and discuss the dynamics of colonization at range limits., (© 2013 Blackwell Publishing Ltd.)
- Published
- 2013
- Full Text
- View/download PDF
19. No apparent ecological trend to the flight-initiating jump performance of five bat species.
- Author
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Gardiner JD and Nudds RL
- Subjects
- Animals, Biomechanical Phenomena, Body Size, Chiroptera anatomy & histology, Ecology, Flight, Animal physiology, Humans, Locomotion physiology, Models, Biological, Models, Statistical, Movement, Regression Analysis, Video Recording, Wings, Animal anatomy & histology, Wings, Animal physiology, Chiroptera physiology
- Abstract
The jump performance of five insectivorous bat species (Miniopterus schreibersii, Myotis blythii, Myotis capaccinii, Myotis myotis and Rhinolophus blasii) was filmed using a high-speed camera. All study bats jumped using a similar technique, with the wing musculature providing the force. The bats jumped off the wrist joint of their wings, typically with their feet already off the ground. Contrary to expectations, jump performance did not correlate with ecology and was instead strongly determined by body size. In general, the larger bats produced more jump force, left the ground at higher speeds and jumped higher than the smaller bats. The differences in force production disappeared when the data were corrected for body size, with the exception of Myotis capaccinii, which produced significantly less force. Scaling of jump performance with body size measured here was compared against two existing muscle performance scaling models. The model suggesting that muscle contraction velocity is proportional to muscle length was better supported than that based on muscle cross-sectional area. Both models, however, failed to accurately predict the scaling of jump forces, with the slope of the relationship being significantly steeper than predicted, highlighting the need for further investigations of vertebrate muscle performance scaling. The results of this study indicate that a bat's jumping ability is a secondary locomotor ability that uses the strongly selected-for flight apparatus with no apparent ecological trend present, i.e. flight so dominates bat locomotor morphology that other locomotor abilities tend to be derivative.
- Published
- 2011
- Full Text
- View/download PDF
20. A potential role for bat tail membranes in flight control.
- Author
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Gardiner JD, Dimitriadis G, Codd JR, and Nudds RL
- Subjects
- Animals, Biomechanical Phenomena, Membranes physiology, Models, Biological, Chiroptera physiology, Flight, Animal physiology, Tail physiology
- Abstract
Wind tunnel tests conducted on a model based on the long-eared bat Plecotus auritus indicated that the positioning of the tail membrane (uropatagium) can significantly influence flight control. Adjusting tail position by increasing the angle of the legs ventrally relative to the body has a two-fold effect; increasing leg-induced wing camber (i.e., locally increased camber of the inner wing surface) and increasing the angle of attack of the tail membrane. We also used our model to examine the effects of flying with and without a tail membrane. For the bat model with a tail membrane increasing leg angle increased the lift, drag and pitching moment (nose-down) produced. However, removing the tail membrane significantly reduced the change in pitching moment with increasing leg angle, but it had no significant effect on the level of lift produced. The drag on the model also significantly increased with the removal of the tail membrane. The tail membrane, therefore, is potentially important for controlling the level of pitching moment produced by bats and an aid to flight control, specifically improving agility and manoeuvrability. Although the tail of bats is different from that of birds, in that it is only divided from the wings by the legs, it nonetheless, may, in addition to its prey capturing function, fulfil a similar role in aiding flight control.
- Published
- 2011
- Full Text
- View/download PDF
21. Energetics and kinematics of walking in the barnacle goose (Branta leucopsis).
- Author
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Nudds RL, Gardiner JD, Tickle PG, and Codd JR
- Subjects
- Animals, Biomechanical Phenomena physiology, Gait physiology, Oxygen Consumption physiology, Energy Metabolism physiology, Geese physiology, Walking physiology
- Abstract
Barnacle geese were walked on a treadmill at speeds ranging from 0.25 to 1.25 ms(-1), which was their highest sustainable speed. No evidence for a gait change was found. The gait of a barnacle goose appears to conform to the classical pendulum mechanics based model of walking, with the kinetic energy of forward motion (horizontal kinetic energy, E(kh)) out-of-phase with the sum of the gravitational potential (E(p)), and vertical kinetic (E(kv)) energies of the centre of mass at all speeds. Why barnacle geese are unable to aerial run when other 'waddling' species do show an aerial phase (e.g., mallard ducks) is unclear. Presumably, however, it is likely to relate to the amount of lateral kinetic energy generated, which is a feature of 'waddling'. We predict that lateral kinetic energy generated by barnacle geese and other waddling species that cannot aerial run, is higher than in those that can. Due to competing selection pressures for swimming and flight, barnacle geese are mechanically and energetically inefficient walkers relative to more specialist cursorial birds. Their upper walking speed, however, appears to be limited by morphology (via kinematics) and not metabolic capacity (energetics)., (Copyright 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
22. Sonation in the male common snipe (Capella gallinago gallinago L.) is achieved by a flag-like fluttering of their tail feathers and consequent vortex shedding.
- Author
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van Casteren A, Codd JR, Gardiner JD, McGhie H, and Ennos AR
- Subjects
- Animal Communication, Animals, Feathers anatomy & histology, Feathers physiology, Male, Sound, Tail physiology, Charadriiformes physiology
- Abstract
Male common snipe (Capella gallinago gallinago) produce a 'drumming' sound with their outer tail feathers during their mating dives, but little is known about how this is achieved. We investigated the movements and sound producing capabilities of the outer tail feathers. Using a wind tunnel, we compared observations of the frequencies of sound produced with the predictions from aerodynamic theory. The feathers were also filmed in an air-flow with a high speed video camera, and subjected to morphological examination and biomechanical testing. We propose a mechanistic hypothesis of how the modified outer feathers of the male common snipe generate sound, and the adaptations that facilitate this. Video and audio analysis of the feather demonstrated that a fluttering of the trailing vane generated the sound. The flutter of the vane is facilitated by the rearward curvature of the feather shaft, reduced branching angles of the barbs in the trailing vane and the lack of hooks on the barbs along a hinge region, all of which increase its flexural compliance. Sound production occurred at the same frequency as the vane movements, at frequencies consistent with it being produced by a fluttering flag mechanism powered by vortex shedding.
- Published
- 2010
- Full Text
- View/download PDF
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