1. Colorimetric and electrochemical analysis of DNAzyme-LAMP amplicons for the detection of Escherichia coli in food matrices.
- Author
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Sewid AH, Dylewski HC, Ramos JH, Morgan BM, Gelalcha BD, D'Souza DH, Wu JJ, Dego OK, and Eda S
- Subjects
- Biosensing Techniques methods, Milk microbiology, Vegetables microbiology, Limit of Detection, Animals, G-Quadruplexes, Molecular Diagnostic Techniques, DNA, Catalytic metabolism, DNA, Catalytic genetics, Nucleic Acid Amplification Techniques methods, Escherichia coli genetics, Escherichia coli isolation & purification, Colorimetry methods, Electrochemical Techniques methods, Food Microbiology methods
- Abstract
Foodborne bacteria like Escherichia coli threaten global food security, necessitating affordable, on-site detection methods, especially in resource-limited settings. This study optimized loop-mediated isothermal amplification (LAMP) integrated with peroxidase-mimicking G-quadruplex DNA structures (DNAzyme), termed DNAzyme-LAMP which was designed to incorporate two different catalytic DNAzymes per amplification unit, enabling colorimetric detection of E. coli in leafy vegetables and milk samples. Additionally, we introduce a novel electrochemical method that enhances analytical sensitivity. The optimized DNAzyme-LAMP achieved a detection limit below 6.3 CFU per reaction or 0.1 aM gene copies. This system lays the groundwork for the development of on-site biosensors and can be adapted for detecting other foodborne pathogens., Competing Interests: Declarations. Competing interests: The authors declare no competing interests., (© 2024. The Author(s).)
- Published
- 2024
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