1. Single-cell transcriptome analysis defines heterogeneity of the murine pancreatic ductal tree
- Author
-
Hendley, Audrey M, Rao, Arjun A, Leonhardt, Laura, Ashe, Sudipta, Smith, Jennifer A, Giacometti, Simone, Peng, Xianlu L, Jiang, Honglin, Berrios, David I, Pawlak, Mathias, Li, Lucia Y, Lee, Jonghyun, Collisson, Eric A, Anderson, Mark S, Fragiadakis, Gabriela K, Yeh, Jen Jen, Ye, Chun Jimmie, Kim, Grace E, Weaver, Valerie M, and Hebrok, Matthias
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Digestive Diseases ,Rare Diseases ,Genetics ,Cancer ,Pancreatic Cancer ,2.1 Biological and endogenous factors ,Oral and gastrointestinal ,Good Health and Well Being ,Animals ,Cell Line ,Cell Separation ,DNA Damage ,Databases ,Genetic ,Disease Models ,Animal ,Epithelial-Mesenchymal Transition ,Female ,Geminin ,Gene Expression Profiling ,Gene Expression Regulation ,Developmental ,Genetic Heterogeneity ,Humans ,Mice ,Inbred C57BL ,Mice ,Transgenic ,Morphogenesis ,Osteopontin ,Pancreatic Ducts ,Pancreatitis ,Chronic ,Phenotype ,RNA-Seq ,Single-Cell Analysis ,Transcriptome ,Mice ,cell biology ,developmental biology ,duct heterogeneity ,mouse ,pancreatic duct ligation ,scRNA-seq ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
To study disease development, an inventory of an organ's cell types and understanding of physiologic function is paramount. Here, we performed single-cell RNA-sequencing to examine heterogeneity of murine pancreatic duct cells, pancreatobiliary cells, and intrapancreatic bile duct cells. We describe an epithelial-mesenchymal transitory axis in our three pancreatic duct subpopulations and identify osteopontin as a regulator of this fate decision as well as human duct cell dedifferentiation. Our results further identify functional heterogeneity within pancreatic duct subpopulations by elucidating a role for geminin in accumulation of DNA damage in the setting of chronic pancreatitis. Our findings implicate diverse functional roles for subpopulations of pancreatic duct cells in maintenance of duct cell identity and disease progression and establish a comprehensive road map of murine pancreatic duct cell, pancreatobiliary cell, and intrapancreatic bile duct cell homeostasis.
- Published
- 2021