89 results on '"Gerelli Y"'
Search Results
2. Membrane thickness and the mechanism of action of the short peptaibol trichogin GA IV
- Author
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Bobone, S., Gerelli, Y., De Zotti, M., Bocchinfuso, G., Farrotti, A., Orioni, B., Sebastiani, F., Latter, E., Penfold, J., Senesi, R., Formaggio, F., Palleschi, A., Toniolo, C., Fragneto, G., and Stella, L.
- Published
- 2013
- Full Text
- View/download PDF
3. Dynamics of lipid–saccharide nanoparticles by quasielastic neutron scattering
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Di Bari, M.T., Gerelli, Y., Sonvico, F., Deriu, A., Cavatorta, F., Albanese, G., Colombo, P., and Fernandez-Alonso, F.
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- 2008
- Full Text
- View/download PDF
4. One-step procedure for the preparation of functional polysaccharide/fatty acid multilayered coatings
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Micciulla, S., Hayward, D.W., Gerelli, Y., Panzarella, A., von Klitzing, R., Gradzielski, M., and Chiappisi, L.
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Condensed Matter::Soft Condensed Matter ,lcsh:Chemistry ,lcsh:QD1-999 ,ddc:540 ,Physics::Optics - Abstract
Soft, stratified, amphiphilic systems are recurrent motifs in nature, e.g., in myelin sheaths or thylakoid stacks, and synthetic analogues are increasingly being exploited in the areas of biocatalysis, biosensing, and drug delivery. The synthesis of such complex multilayered systems usually requires lengthy preparation protocols. Here, we demonstrate the formation of multilayered fatty acid/polysaccharide thin films prepared via a single step protocol, which exploits the spontaneous self-assembly of the components into vesicular systems in aqueous solution. The solutions are characterized by light and neutron scattering experiments and the thin films by neutron reflectometry, optical ellipsometry, atomic force microscopy, and x-ray diffraction. The thin films exhibit structural features with sub-10 nm dimensions, stemming from the ordered sequence of hydrophilic and hydrophobic layers and respond strongly to changes in ambient humidity. Using this approach, films with a total thickness varying from tens to hundreds of nanometers can be easily prepared.
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- 2021
5. Effects of model membranes on lysozyme amyloid aggregation
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Burrelli Annaclaudia, Moretti Paolo, Gerelli Yuri, and Ortore Maria Grazia
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amyloid ,membrane ,dls ,afm ,qcm ,Biology (General) ,QH301-705.5 - Abstract
The study of the interaction between lipid membranes and amyloidogenic peptides is a turning point for understanding the processes involving the cytotoxicity of peptides involved in neurodegenerative diseases. In this work, we perform an experimental study of model membrane–lysozyme interaction to understand how the formation of amyloid fibrils can be affected by the presence of polar and zwitterionic phospholipid molecules (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine [POPC] and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol [POPG]). The study was conducted above and below the critical micellar concentration (CMC) using dynamic light scattering (DLS), atomic force microscopy (AFM), UV–Vis spectrophotometry, and the quartz crystal microbalance (QCM). Our results show that the presence of phospholipids appears to be a factor favoring the formation of amyloid aggregates. Spectrophotometric and DLS data revealed that the quantity of β{\rm{\beta }}-structure increases in the presence of POPG and POPC at different concentrations. The presence of POPG and POPC increases the speed of the nucleation process, without altering the overall structures of the fibrillar final products.
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- 2023
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6. Influence of myelin proteins on the structure and dynamics of a model membrane with emphasis on the low temperature regime.
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Knoll, W., Peters, J., Kursula, P., Gerelli, Y., and Natali, F.
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MYELIN proteins ,INSULATING materials ,ARTIFICIAL membranes ,CRYSTAL structure ,MOLECULAR dynamics ,LOW temperatures - Abstract
Myelin is an insulating, multi-lamellar membrane structure wrapped around selected nerve axons. In-creasing the speed of nerve impulses, it is crucial for the proper functioning of the vertebrate nervous system. Human neurodegenerative diseases, such as multiple sclerosis, are linked to damage to the myelin sheath through demyelination. Myelin exhibits a well defined subset of myelin-specific pro-teins, whose influence on membrane dynamics, i.e., myelin flexibility and stability, has not yet been explored in detail. In a first paper [W. Knoll, J. Peters, P. Kursula, Y. Gerelli, J. Ollivier, B. Demé, M. Telling, E. Kemner, and F. Natali, Soft Matter 10, 519 (2014)] we were able to spotlight, through neutron scattering experiments, the role of peripheral nervous system myelin proteins on membrane stability at room temperature. In particular, the myelin basic protein and peripheral myelin protein 2 were found to synergistically influence the membrane structure while keeping almost unchanged the membrane mobility. Further insight is provided by this work, in which we particularly address the investigation of the membrane flexibility in the low temperature regime. We evidence a different behavior suggesting that the proton dynamics is reduced by the addition of the myelin basic protein accompanied by negligible membrane structural changes. Moreover, we address the importance of correct sample preparation and characterization for the success of the experiment and for the relia-bility of the obtained results. [ABSTRACT FROM AUTHOR]
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- 2014
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7. Disruption of Asymmetric Lipid Bilayer Models Mimicking the Outer Membrane of Gram-Negative Bacteria by an Active Plasticin
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Michel, J. P., primary, Wang, Y. X., additional, Kiesel, I., additional, Gerelli, Y., additional, and Rosilio, V., additional
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- 2017
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8. Dynamics of lipid-saccharide nanoparticles by quasielastic neutron scattering
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Di Bari, MT, Gerelli, Y, Sonvico, F, Deriu, A, Cavatorta, F, Albanese, G, Colombo, P, and Fernandez-Alonso, F
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Chemical Physics - Abstract
Nano- and microparticles composed of saccharide and lipid systems are extensively investigated for applications as highly biocompatible drug carriers. A detailed understanding of particle-solvent interactions is of key importance in order to tailor their characteristics for delivering drugs with specific chemical properties. Here we report results of a quasielastic neutron scattering (QENS) investigation on lecithin/chitosan nanoparticles prepared by autoassembling the two components in an aqueous solution. The measurements were performed at room temperature on lyophilized and H2O hydrated nanoparticles (h = 0.47 w H2O/w hydrated sample). In the latter, hydration water is mostly enclosed inside the nanoparticles; its dynamics is similar to that of bulk water but with a significant decrease in diffusivity. The scattering from the nanoparticles can be described by a simple model of confined diffusion. In the lyophilized state only hydrogens belonging to the polar heads are seen as mobile within the experimental time-window. In the hydrated sample the diffusive dynamics involves also a significant part of the hydrogens in the lipid tails. © 2007 Elsevier B.V. All rights reserved.
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- 2008
9. Progesterone-loaded lecithin/chitosan isopropylmyristate nanoparticles for transmucosal delivery
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Sonvico, F., Barbieri, S., Rossi, A., Gerelli, Y., Deriu, A., Colombo, P., and Colombo, Gaia
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- 2007
10. Membrane thickness and the mechanism of action of the short peptaibol trichogin GA IV.
- Author
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Bobone, S, Gerelli, Y, De, Zotti M, Bocchinfuso, G, Farrotti, A, Orioni, B, Sebastiani, F, Latter, E, Penfold, J, Senesi, R, Formaggio, F, Palleschi, A, Toniolo, C, Fragneto, G, Stella, Lorenzo, Bobone, S, Gerelli, Y, De, Zotti M, Bocchinfuso, G, Farrotti, A, Orioni, B, Sebastiani, F, Latter, E, Penfold, J, Senesi, R, Formaggio, F, Palleschi, A, Toniolo, C, Fragneto, G, and Stella, Lorenzo
- Published
- 2013
11. Flexibility and drug release features of lipid/saccharide nanoparticles
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Gerelli, Y, Di Bari, MT, Barbieri, S, Sonvico, F, Colombo, P, Natali, F, Deriu, A, Gerelli, Y, Di Bari, MT, Barbieri, S, Sonvico, F, Colombo, P, Natali, F, and Deriu, A
- Abstract
The effect of lipophilic additives (excipients and drugs) on the behavior of lipid/saccharide nanoparticles has been investigated by incoherent elastic neutron scattering. Temperature scans from 20 K to 350 K have been performed on lecithin/chitosan particles loaded with isopropyl myristate and cetyl-stearyl alcohol, two lipophilic molecules with different melting temperatures which are commonly added to improve drug loading efficiency. In a similar way the effect of tamoxifen citrate, a lipophilic drug frequently used in breast cancer therapy, has also been studied. The different melting points of the two excipients affect mostly the low-temperature behavior of the nanoparticles. At physiological temperatures they both improve the particle flexibility. On the other hand addition of tamoxifen leads to stiffer structures and to lower amounts of released drug. The macroscopic features of the drug release appear to be correlated to the microscopic flexibility determined by neutron scattering. The data confirm also the role of chitosan as a stiffening and stabilizing agent of the lipid particles. © 2010 The Royal Society of Chemistry.
- Published
- 2010
12. Structure of self-organized multilayer nanoparticles for drug delivery
- Author
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Gerelli, Y, Barbieri, S, Di Bari, MT, Deriu, A, Cantù, L, Brocca, P, Sonvico, F, Colombo, P, May, R, Motta, S, Gerelli, Y, Barbieri, S, Di Bari, MT, Deriu, A, Cantù, L, Brocca, P, Sonvico, F, Colombo, P, May, R, and Motta, S
- Abstract
The combined use of cryo-TEM, dynamic light scattering, and small-angle X-ray and neutron scattering techniques allows a detailed structural model of complex pharmaceutical preparations of soybean lecithin/chitosan nanoparticles used as drug vectors to be worked out. Charge-driven self-organization of the lipid(-)/polysaccharide(+) vesicles occurs during rapid injection, under mechanical stirring, of an ethanol solution of soybean lecithin into a chitosan aqueous solution. We conclude that beyond the charge inversion region of the phase diagram, i.e., entering the redissolution region, the initial stages of particle formation are likely to be affected by a re-entrant condensation effect at the nanoscale. This behavior resembles that at the mesoscale which is well-known for polyion/amphiphile systems. Close to the boundary of the charge inversion region, nanoparticle formation occurs under a maximum condensation condition at the nanoscale and the complexation-aggregation process is driven toward a maximum multilamellarity. Interestingly, the formulation that maximizes vesicle multilamellarity corresponds to that displaying the highest drug loading efficiency. © 2008 American Chemical Society.
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- 2008
13. Structure and organization of phospholipid/polysaccharide nanoparticles
- Author
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Gerelli, Y, Di Bari, MT, Deriu, A, Cantu, L, Colombo, P, Como, C, Motta, S, Sonvico, F, May, R, Gerelli, Y, Di Bari, MT, Deriu, A, Cantu, L, Colombo, P, Como, C, Motta, S, Sonvico, F, and May, R
- Abstract
In recent years nanoparticlesand microparticles composed of polymeric or lipid material have been proposed as drug carriers for improving the efficacy of encapsulated drugs. For the production of these systems different materials have been proposed, among them phospholipids and polysaccharides due to their biocompatibility, biodegradability, low cost and safety. We report here a morphological and structural investigation, performed using cryo-TEM, static light scattering and small angle neutron and x-ray scattering, on phospholipid/saccharide nanoparticles loaded with a lipophilic positively charged drug (tamoxifen citrate) used in breast cancer therapy. The lipid component was soybean lecithin; the saccharide one was chitosan that usually acts as an outer coating increasing vesicle stability. The microscopy and scattering data indicate the presence of two distinct nanoparticle families: uni-lamellar vesicles with average radius 90and multi-lamellar vesicles with average radius 440. In both families the inner core is occupied by the solvent. The presence of tamoxifen gives rise to a multi-lamellar structure of the lipid outer shell. It also induces a positive surface charge into the vesicles, repelling the positively charged chitosan molecules which therefore do not take part in nanoparticle formation. © IOP Publishing Ltd.
- Published
- 2008
14. Anomalous proton dynamics of water molecules in neural tissue as seen by quasi-elastic neutron scattering. Impact on medical imaging techniques
- Author
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Natali, F., primary, Gerelli, Y., additional, Stelletta, C., additional, and Peters, J., additional
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- 2013
- Full Text
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15. IN13 Backscattering Spectrometer at ILL: Looking for Motions in Biological Macromolecules and Organisms
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Francesca, Natali, primary, Peters, J., additional, Russo, D., additional, Barbieri, S., additional, Chiapponi, C., additional, Cupane, A., additional, Deriu, A., additional, Di Bari, M. T., additional, Farhi, E., additional, Gerelli, Y., additional, Mariani, P., additional, Paciaroni, A., additional, Rivasseau, C., additional, Schirò, G., additional, and Sonvico, F., additional
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- 2008
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16. Structure of Self-Organized Multilayer Nanoparticles for Drug Delivery
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Gerelli, Y., primary, Barbieri, S., additional, Di Bari, M. T., additional, Deriu, A., additional, Cantù, L., additional, Brocca, P., additional, Sonvico, F., additional, Colombo, P., additional, May, R., additional, and Motta, S., additional
- Published
- 2008
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17. Structure and organization of phospholipid/polysaccharide nanoparticles
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Gerelli, Y, primary, Di Bari, M T, additional, Deriu, A, additional, Cantù, L, additional, Colombo, P, additional, Como, C, additional, Motta, S, additional, Sonvico, F, additional, and May, R, additional
- Published
- 2008
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18. Applications of neutron reflectometry in biology
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Gerelli Yuri
- Subjects
Physics ,QC1-999 - Abstract
Over the last 10 years, neutron reflectometry (NR) has emerged as a powerful technique for the investigation of biologically relevant thin films. The great advantage of NR with respect to many other surface-sensitive techniques is its sub-nanometer resolution that enables structural characterizations at the molecular level. In the case of bio-relevant samples, NR is non-destructive and can be used to probe thin films at buried interfaces or enclosed in bulky sample environment equipment. Moreover, recent advances in biomolecular deutera-tion enabled new labeling strategies to highlight certain structural features and to resolve with better accuracy the location of chemically similar molecules within a thin film. In this chapter I will describe some applications of NR to bio-relevant samples and discuss some of the data analysis approaches available for biological thin films. In particular, examples on the structural characterization of biomembranes, protein films and protein-lipid interactions will be described.
- Published
- 2020
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19. The dimer-monomer equilibrium of SARS-CoV-2 main protease is affected by small molecule inhibitors
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Antonino Lauria, Lucia Comez, Lucrezia Savini, Yuri Gerelli, Francesco Spinozzi, Antonio Palumbo Piccionello, Paola Marzullo, Lucia Silvestrini, Norhan Belhaj, Alessandro Paciaroni, Caterina Petrillo, Paolo Mariani, Valeria Libera, Maria Grazia Ortore, Silvestrini L., Belhaj N., Comez L., Gerelli Y., Lauria A., Libera V., Mariani P., Marzullo P., Ortore M.G., Palumbo Piccionello A., Petrillo C., Savini L., Paciaroni A., and Spinozzi F.
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0301 basic medicine ,Molecular biology ,Protein Conformation ,Science ,medicine.medical_treatment ,Dimer ,Biophysics ,Plasma protein binding ,010402 general chemistry ,Antiviral Agents ,01 natural sciences ,Article ,Dissociation (chemistry) ,03 medical and health sciences ,chemistry.chemical_compound ,Protein structure ,X-Ray Diffraction ,Drug Discovery ,medicine ,Humans ,Protease Inhibitors ,Coronavirus 3C Proteases ,Virtual screening ,Multidisciplinary ,Protease ,SARS-CoV-2 ,Chemistry ,SARS-CoV-2, main protease Mpro, enzymatic activity inhibition, Small Angle X-ray Scattering, small inhibitors, virtual screening ,COVID-19 ,Computational Biology ,Small molecule ,Computational biology and bioinformatics ,0104 chemical sciences ,Molecular Docking Simulation ,Dissociation constant ,030104 developmental biology ,Medicine ,Thermodynamics ,Dimerization ,Protein Binding - Abstract
The maturation of coronavirus SARS-CoV-2, which is the etiological agent at the origin of the COVID-19 pandemic, requires a main protease Mpro to cleave the virus-encoded polyproteins. Despite a wealth of experimental information already available, there is wide disagreement about the Mpro monomer-dimer equilibrium dissociation constant. Since the functional unit of Mpro is a homodimer, the detailed knowledge of the thermodynamics of this equilibrium is a key piece of information for possible therapeutic intervention, with small molecules interfering with dimerization being potential broad-spectrum antiviral drug leads. In the present study, we exploit Small Angle X-ray Scattering (SAXS) to investigate the structural features of SARS-CoV-2 Mpro in solution as a function of protein concentration and temperature. A detailed thermodynamic picture of the monomer-dimer equilibrium is derived, together with the temperature-dependent value of the dissociation constant. SAXS is also used to study how the Mpro dissociation process is affected by small inhibitors selected by virtual screening. We find that these inhibitors affect dimerization and enzymatic activity to a different extent and sometimes in an opposite way, likely due to the different molecular mechanisms underlying the two processes. The Mpro residues that emerge as key to optimize both dissociation and enzymatic activity inhibition are discussed.
- Published
- 2021
20. Block Copolymers-Based Nanoporous Thin Films with Tailored Morphology for Biomolecules Adsorption
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Rocco Di Girolamo, Yuri Gerelli, Claudio De Rosa, Finizia Auriemma, Chiara Santillo, Robert Barker, Anna Malafronte, Malafronte, A., Auriemma, F., Santillo, C., Di Girolamo, R., Barker, R., Gerelli, Y., and De Rosa, C.
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Materials science ,nanostructured surface ,Nanoporous ,Mechanical Engineering ,block copolymer ,02 engineering and technology ,Quartz crystal microbalance ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,protein adsorption ,0104 chemical sciences ,chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,Mechanics of Materials ,nanoporous surface ,Lamellar structure ,Neutron reflectometry ,Polystyrene ,Thin film ,0210 nano-technology ,Protein adsorption - Abstract
The adsorption of myoglobin (Mb) onto nanoporous thin films build up using block‐copolymers (BCPs) is analyzed. The nanoporous thin films, fabricated by exploiting self‐assembly of lamellar BCPs and the concept of sacrificial block, are characterized by a well‐defined morphology containing nanochannels of width ≈20 nm delimited by polystyrene (PS) domains, decorated with pendant poly(ethylene oxide) (PEO) chains. The adsorption of Mb onto the nanoporous material is studied by means of UV–visible spectroscopy, quartz crystal microbalance, and neutron reflectometry measurements. In order to determine the role of nanopores, experiments are also conducted by using supports made of nonporous PS thin films and nude glass slides. The results indicate that the BCP‐nanoporous material exhibits a remarkably higher adsorption capability than PS and glass. As PEO exhibits a low degree of protein adsorption, this result may be essentially attributed to the presence of the nanopores. The large surface area, the opened pore structure, and the trapping effect of the pores are the main factors determining the increased Mb adsorption capability of the BCP‐based support. Yet, the presence of PEO chains decorating the PS walls at porous surface does not prevent Mb biomolecules to establish good interactions with the support.
- Published
- 2020
21. IN13 Backscattering Spectrometer at ILL: Looking for Motions in Biological Macromolecules and Organisms
- Author
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Emmanuel Farhi, Yuri Gerelli, Corinne Rivasseau, Fabio Sonvico, Judith Peters, Paolo Mariani, M.T. Di Bari, Giorgio Schirò, Natali Francesca, Chiara Chiapponi, Alessandro Paciaroni, Antonio Deriu, Stefano Barbieri, Daniela Russo, Antonio Cupane, Istituto Nazionale per la Fisica della Materia - Operative groupe in Grenoble (INFM-CNR and CRS-SOFT), European Synchrotron Radiation Facility (ESRF), Institut de biologie structurale (IBS - UMR 5075 ), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Pharmaceutics Department, Università degli studi di Parma = University of Parma (UNIPR), Department of Physics - University of Parma, Università degli studi di Palermo - University of Palermo, Institut Laue-Langevin (ILL), Department of Physics, University of Ancona, University of Ancona, Department of Physics, University of Perugia, Università degli Studi di Perugia = University of Perugia (UNIPG), Laboratoire de physiologie cellulaire végétale (LPCV), Université Joseph Fourier - Grenoble 1 (UJF)-Institut National de la Recherche Agronomique (INRA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS), University of Parma = Università degli studi di Parma [Parme, Italie], Department of Physics - University of Palermo, ILL, Università degli Studi di Perugia (UNIPG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), NATALI F, PETERS J, RUSSO D, BARBIERI S, CHIAPPONI C, CUPANE A, DERIU A, DI BARI M T, FARHI E, GERELLI Y, MARIANI P, PACIARONI A, RIVASSEAU C, SCHIRO G, SONVICO F, Institut de biologie structurale (IBS - UMR 5075), Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS), University of Parma, and Université Joseph Fourier - Grenoble 1 (UJF)-Institut National de la Recherche Agronomique (INRA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)
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Physics ,Nuclear and High Energy Physics ,Spectrometer ,business.industry ,neutron scattering ,02 engineering and technology ,technique ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,spectrometry ,Optics ,instrument ,biological physics ,[PHYS.PHYS.PHYS-INS-DET]Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det] ,0210 nano-technology ,business ,ComputingMilieux_MISCELLANEOUS - Abstract
In 1998, three partner groups (the French institutions Institut de Biologie Structurale and the Leon Brillouin Laboratory and the Italian Istituto Nazionale per la Fisica della Materia, now merged with the Consiglio Nazionale delle Ricerche, INFM-CNR) applied to operate the thermal backscattering spectrometer IN13, at the Institut Laue Langevin, as a French-Italian Collaborative Research Group (CRG). The plan was to have access to a dedicated spectrometer in order to explore how far neutron scattering could contribute to the understanding of dynamics in biological macromolecules: how “flexible” must be a biological object to perform its function?
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- 2008
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22. Fine-tuning the architecture of microgels by varying the initiator addition time.
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Buratti E, Camerin F, Nigro V, Franco S, Ruiz-Franco J, Porcar L, Angelini R, Ruzicka B, Gerelli Y, and Zaccarelli E
- Abstract
Poly- N -isopropylacrylamide (PNIPAM) microgels are versatile colloidal-scale polymer networks that exhibit unique responsiveness to external stimuli, such as temperature. While the synthesis of PNIPAM microgels is well-documented, there is limited exploration of how their structural properties can be modified by subtle changes in the polymerization process. In this work, we carefully investigate how varying the time of addition of a common initiator, such as potassium persulfate, during the polymerization process allows a precise control over microgel architecture. Our findings, based on a combination of numerical simulations, scattering, and rheology experiments, reveal that delayed initiator addition results in a more heterogeneous network, characterized by a less extended corona. In contrast, more homogeneous microgels are obtained by adding the initiator all at the start of the synthesis. In this way, the internal mass distribution of the particles can be tuned, highlighting the importance of synthesis timing for optimizing microgel conformation and functionality in tailored applications.
- Published
- 2025
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23. Assessing the interaction between the N-terminal region of the membrane protein magnesium transporter A and a lipid bilayer.
- Author
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Skog AE, Jones NC, Månsson LK, Morth JP, Vrønning Hoffmann S, Gerelli Y, and Skepö M
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- Cation Transport Proteins chemistry, Cation Transport Proteins metabolism, Magnesium chemistry, Magnesium metabolism, Adsorption, Lipid Bilayers chemistry, Lipid Bilayers metabolism, Molecular Dynamics Simulation
- Abstract
This study investigates the interaction of KEIF, the intrinsically disordered N-terminal region of the magnesium transporter MgtA, with lipid bilayers mimicking cell membranes. Combining experimental techniques such as neutron reflectometry (NR), quartz-crystal microbalance with dissipation monitoring (QCM-D), synchrotron radiation circular dichroism (SRCD), and oriented circular dichroism (OCD), with molecular dynamics (MD) simulations, we characterized KEIF's adsorption behavior., Hypothesis: KEIF undergoes conformational changes upon interacting with lipid bilayers, potentially influencing MgtA's function within the plasma membrane., Experiments: The study assessed KEIF's structural transitions and position within lipid bilayers under various conditions, including zwitterionic versus anionic bilayers and different salt concentrations. The techniques analyzed adsorption-induced structural shifts and peptide localization within the bilayer., Findings: KEIF transitions from a disordered to a more structured state, notably increasing α-helical content upon adsorption to lipid bilayers. The peptide resides primarily in the hydrophobic tail region of the bilayer, where it may displace lipids. Electrostatic interactions, modulated by bilayer charge and ionic strength, play a critical role. These results suggest that KEIF's conformational changes and bilayer interactions can be integral to its potential modulatory role in MgtA function within the plasma membrane. This research highlights the importance of surface-induced structural transitions in intrinsically disordered proteins and their implications for membrane protein modulation., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Marie Skepö reports financial support was provided by Lund University. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
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- 2025
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24. Translocation of Antimicrobial Peptides across Model Membranes: The Role of Peptide Chain Length.
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Skog AE, Paracini N, Gerelli Y, and Skepö M
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- Antimicrobial Peptides chemistry, Lipid Bilayers chemistry, Histatins chemistry, Monte Carlo Method
- Abstract
Cushioned lipid bilayers are structures consisting of a lipid bilayer supported on a solid substrate with an intervening layer of soft material. They offer possibilities for studying the behavior and interactions of biological membranes more accurately under physiological conditions. In this work, we continue our studies of cushion formation induced by histatin 5 (
24 Hst5), focusing on the effect of the length of the peptide chain.24 Hst5 is a short, positively charged, intrinsically disordered saliva peptide, and here, both a shorter (14 Hst5) and a longer (48 Hst5) peptide variant were evaluated. Experimental surface active techniques were combined with coarse-grained Monte Carlo simulations to obtain information about these peptides. Results show that at 10 mM NaCl, both the shorter and the longer peptide variants behave like24 Hst5 and a cushion below the bilayer is formed. At 150 mM NaCl, however, no interaction is observed for24 Hst5. On the contrary, a cushion is formed both in the case of14 Hst5 and48 Hst5, and in the latter, an additional thick, diffuse, and highly hydrated layer of peptide and lipid molecules is formed, on top of the bilayer. Similar trends were observed from the simulations, which allowed us to hypothesize that positively charged patches of the amino acids lysine and arginine in all three peptides are essential for them to interact with and translocate over the bilayer. We therefore hypothesize that electrostatic interactions are important for the interaction between the solid-supported lipid bilayers and the peptide depending on the linear charge density through the primary sequence and the positively charged patches in the sequence. The understanding of how, why, and when the cushion is formed opens up the possibility for this system to be used in the research and development of new drugs and pharmaceuticals.- Published
- 2024
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25. Softness matters: effects of compression on the behavior of adsorbed microgels at interfaces.
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Gerelli Y, Camerin F, Bochenek S, Schmidt MM, Maestro A, Richtering W, Zaccarelli E, and Scotti A
- Abstract
Deformable colloids and macromolecules adsorb at interfaces as they decrease the interfacial energy between the two media. The deformability, or softness, of these particles plays a pivotal role in the properties of the interface. In this study, we employ a comprehensive in situ approach, combining neutron reflectometry with molecular dynamics simulations, to thoroughly examine the profound influence of softness on the structure of microgel Langmuir monolayers under compression. Lateral compression of both hard and soft microgel particle monolayers induces substantial structural alterations, leading to an amplified protrusion of the microgels into the aqueous phase. However, a critical distinction emerges: hard microgels are pushed away from the interface, in stark contrast to the soft ones, which remain firmly anchored to it. Concurrently, on the air-exposed side of the monolayer, lateral compression induces a flattening of the surface of the hard monolayer. This phenomenon is not observed for the soft particles as the monolayer is already extremely flat even in the absence of compression. These findings significantly advance our understanding of the key role of softness on both the equilibrium phase behavior of the monolayer and its effect when soft colloids are used as stabilizers of responsive interfaces and emulsions.
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- 2024
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26. High-Density Lipoprotein function is modulated by the SARS-CoV-2 spike protein in a lipid-type dependent manner.
- Author
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Correa Y, Del Giudice R, Waldie S, Thépaut M, Micciula S, Gerelli Y, Moulin M, Delaunay C, Fieschi F, Pichler H, Haertlein M, Forsyth VT, Le Brun A, Moir M, Russell RA, Darwish T, Brinck J, Wodaje T, Jansen M, Martín C, Roosen-Runge F, and Cárdenas M
- Subjects
- Humans, Spike Glycoprotein, Coronavirus, SARS-CoV-2 metabolism, Cholesterol, Triglycerides, Lipoproteins, HDL, COVID-19
- Abstract
There is a close relationship between the SARS-CoV-2 virus and lipoproteins, in particular high-density lipoprotein (HDL). The severity of the coronavirus disease 2019 (COVID-19) is inversely correlated with HDL plasma levels. It is known that the SARS-CoV-2 spike (S) protein binds the HDL particle, probably depleting it of lipids and altering HDL function. Based on neutron reflectometry (NR) and the ability of HDL to efflux cholesterol from macrophages, we confirm these observations and further identify the preference of the S protein for specific lipids and the consequent effects on HDL function on lipid exchange ability. Moreover, the effect of the S protein on HDL function differs depending on the individuals lipid serum profile. Contrasting trends were observed for individuals presenting low triglycerides/high cholesterol serum levels (LTHC) compared to high triglycerides/high cholesterol (HTHC) or low triglycerides/low cholesterol serum levels (LTLC). Collectively, these results suggest that the S protein interacts with the HDL particle and, depending on the lipid profile of the infected individual, it impairs its function during COVID-19 infection, causing an imbalance in lipid metabolism., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Crown Copyright © 2023. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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27. Distributing aminophospholipids asymmetrically across leaflets causes anomalous membrane stiffening.
- Author
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Frewein MPK, Piller P, Semeraro EF, Czakkel O, Gerelli Y, Porcar L, and Pabst G
- Subjects
- Animals, Cell Membrane chemistry, Membranes, Sphingomyelins, Lipid Bilayers chemistry, Mammals, Phospholipids chemistry, Phosphatidylcholines chemistry
- Abstract
We studied the mechanical leaflet coupling of prototypic mammalian plasma membranes using neutron spin-echo spectroscopy. In particular, we examined a series of asymmetric phospholipid vesicles with phosphatidylcholine and sphingomyelin enriched in the outer leaflet and inner leaflets composed of phosphatidylethanolamine/phosphatidylserine mixtures. The bending rigidities of most asymmetric membranes were anomalously high, exceeding even those of symmetric membranes formed from their cognate leaflets. Only asymmetric vesicles with outer leaflets enriched in sphingolipid displayed bending rigidities in conformity with these symmetric controls. We performed complementary small-angle neutron and x-ray experiments on the same vesicles to examine possible links to structural coupling mechanisms, which would show up in corresponding changes in membrane thickness. In addition, we estimated differential stress between leaflets originating either from a mismatch of their lateral areas or spontaneous curvatures. However, no correlation with asymmetry-induced membrane stiffening was observed. To reconcile our findings, we speculate that an asymmetric distribution of charged or H-bond forming lipids may induce an intraleaflet coupling, which increases the weight of hard undulatory modes of membrane fluctuations and hence the overall membrane stiffness., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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28. Interaction of a Histidine-Rich Antimicrobial Saliva Peptide with Model Cell Membranes: The Role of Histidines.
- Author
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Skog AE, Corucci G, Tully MD, Fragneto G, Gerelli Y, and Skepö M
- Subjects
- Antimicrobial Peptides, Saliva metabolism, Lipid Bilayers chemistry, Peptides, Cell Membrane metabolism, Histidine, Anti-Infective Agents pharmacology, Anti-Infective Agents chemistry
- Abstract
Histatin 5 is a histidine-rich, intrinsically disordered, multifunctional saliva protein known to act as a first line of defense against oral candidiasis caused by Candida albicans . An earlier study showed that, upon interaction with a common model bilayer, a protein cushion spontaneously forms underneath the bilayer. Our hypothesis is that this effect is of electrostatic origin and that the observed behavior is due to proton charge fluctuations of the histidines, promoting attractive electrostatic interactions between the positively charged proteins and the anionic surfaces, with concomitant counterion release. Here we are investigating the role of the histidines in more detail by defining a library of variants of the peptide, where the former have been replaced by the pH-insensitive amino acid glutamine. By using experimental techniques such as circular dichroism, small angle X-ray scattering, quartz crystal microbalance with dissipation monitoring, and neutron reflectometry, it was determined that changing the number of histidines in the peptide sequence did not affect the structure of the peptide dissolved in solution. However, it was shown to affect the penetration depth of the peptide into the bilayer, where all variants except the one with zero histidines were found below the bilayer. A decrease in the number of histidine from the original seven to zero decreases the ability of the peptide to penetrate the bilayer, and the peptide is then also found residing within the bilayer. We hypothesize that this is due to the ability of the histidines to charge titrate, which charges up the peptide, and enables it to penetrate and translocate through the lipid bilayer.
- Published
- 2023
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29. Correction to "Spontaneous Formation of Cushioned Model Membranes Promoted by an Intrinsically Disordered Protein".
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Gerelli Y, Eriksson Skog A, Jephthah S, Welbourn RJL, Klechikov A, and Skepö M
- Published
- 2022
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30. Probing the Separation Distance between Biological Nanoparticles and Cell Membrane Mimics Using Neutron Reflectometry with Sub-Nanometer Accuracy.
- Author
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Armanious A, Gerelli Y, Micciulla S, Pace HP, Welbourn RJL, Sjöberg M, Agnarsson B, and Höök F
- Subjects
- Cell Membrane metabolism, Adsorption, Neutrons, Lipid Bilayers chemistry, Nanoparticles chemistry
- Abstract
Nanoparticle interactions with cellular membranes are controlled by molecular recognition reactions and regulate a multitude of biological processes, including virus infections, biological nanoparticle-mediated cellular communication, and drug delivery applications. Aided by the design of various supported cell membrane mimics, multiple methods have been employed to investigate these types of interactions, revealing information on nanoparticle coverage, interaction kinetics, as well as binding strength; however, precise quantification of the separation distance across which these delicate interactions occur remains elusive. Here, we demonstrate that carefully designed neutron reflectometry (NR) experiments followed by an attentive selection and application of suitable theoretical models offer a means to quantify the distance separating biological nanoparticles from a supported lipid bilayer (SLB) with sub-nanometer precision. The distance between the nanoparticles and SLBs was tuned by exploiting either direct adsorption or specific binding using DNA tethers with different conformations, revealing separation distances of around 1, 3, and 7 nm with nanometric accuracy. We also show that NR provides precise information on nanoparticle coverage, size distribution, material composition, and potential structural changes in the underlying planar SLB induced upon nanoparticle binding. The precision with which these parameters could be quantified should pave an attractive path for investigations of the interactions between nanoparticles and interfaces at length scales and resolutions that were previously inaccessible. This thus makes it possible to, for example, gain an in-depth understanding of the molecular recognition reactions of inorganic and biological nanoparticles with cellular membranes.
- Published
- 2022
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31. Interdigitation-Induced Order and Disorder in Asymmetric Membranes.
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Frewein MPK, Piller P, Semeraro EF, Batchu KC, Heberle FA, Scott HL, Gerelli Y, Porcar L, and Pabst G
- Subjects
- 1,2-Dipalmitoylphosphatidylcholine, Lipid Bilayers chemistry, Liposomes, Phosphatidylcholines chemistry, Sphingomyelins chemistry, Cyclodextrins
- Abstract
We studied the transleaflet coupling of compositionally asymmetric liposomes in the fluid phase. The vesicles were produced by cyclodextrin-mediated lipid exchange and contained dipalmitoyl phosphatidylcholine (DPPC) in the inner leaflet and different mixed-chain phosphatidylcholines (PCs) as well as milk sphingomyelin (MSM) in the outer leaflet. In order to jointly analyze the obtained small-angle neutron and X-ray scattering data, we adapted existing models of trans-bilayer structures to measure the overlap of the hydrocarbon chain termini by exploiting the contrast of the terminal methyl ends in X-ray scattering. In all studied systems, the bilayer-asymmetry has large effects on the lipid packing density. Fully saturated mixed-chain PCs interdigitate into the DPPC-containing leaflet and evoke disorder in one or both leaflets. The long saturated acyl chains of MSM penetrate even deeper into the opposing leaflet, which in turn has an ordering effect on the whole bilayer. These results are qualitatively understood in terms of a balance of entropic repulsion of fluctuating hydrocarbon chain termini and van der Waals forces, which is modulated by the interdigitation depth. Monounsaturated PCs in the outer leaflet also induce disorder in DPPC despite vestigial or even absent interdigitation. Instead, the transleaflet coupling appears to emerge here from a matching of the inner leaflet lipids to the larger lateral lipid area of the outer leaflet lipids., (© 2022. The Author(s).)
- Published
- 2022
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32. Tuning curvature and phase behavior of monoolein bilayers by epigallocatechin-3-gallate: Structural insight and cytotoxicity.
- Author
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Minnelli C, Moretti P, Laudadio E, Gerelli Y, Pigozzo A, Armeni T, Galeazzi R, Mariani P, and Mobbili G
- Subjects
- Glycerides, Tea, Catechin analogs & derivatives
- Abstract
The use of glyceryl monooleate (GMO)-based nanoparticles has not yet been explored in overcoming the low bioavailability of Epigallocatechin-3-gallate (EGCG), a green tea polyphenol with a known anticancer activity. Since the inclusion of a guest molecule can affect the curvature and the supramolecular structure of fully hydrated GMO-based phase, the phase behavior of bulk and dispersed liquid crystalline systems containing EGCG were explored by Small Angle Neutron Scattering and X-Ray Diffraction experiments. Molecular Dynamic Simulations showed how the interaction of EGCG with polar heads of GMO strongly affects the curvature and packing of GMO phase. The EGCG encapsulation efficiency was determined in the nanodispersions and their size studied by Dynamic Light Scattering and Atomic Force Microscopy. A nanodispersed formulation has been optimized with a cytotoxic effect more than additive of GMO and EGCG., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2022
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33. Interaction of Caffeine with Model Lipid Membranes.
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Tavagnacco L, Corucci G, and Gerelli Y
- Subjects
- Hydrophobic and Hydrophilic Interactions, Neutrons, Quartz Crystal Microbalance Techniques, Caffeine, Lipid Bilayers
- Abstract
Caffeine is not only a widely consumed active stimulant, but it is also a model molecule commonly used in pharmaceutical sciences. In this work, by performing quartz-crystal microbalance and neutron reflectometry experiments we investigate the interaction of caffeine molecules with a model lipid membrane. We determined that caffeine molecules are not able to spontaneously partition from an aqueous environment, enriched in caffeine, into a bilayer. Caffeine could be however included in solid-supported lipid bilayers if present with lipids during self-assembly. In this case, thanks to surface-sensitive techniques, we determined that caffeine molecules are preferentially located in the hydrophobic region of the membrane. These results are highly relevant for the development of new drug delivery vectors, as well as for a deeper understanding of the membrane permeation role of purine molecules.
- Published
- 2021
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- View/download PDF
34. Insertion and activation of functional Bacteriorhodopsin in a floating bilayer.
- Author
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Mukhina T, Gerelli Y, Hemmerle A, Koutsioubas A, Kovalev K, Teulon JM, Pellequer JL, Daillant J, Charitat T, and Fragneto G
- Subjects
- Lipid Bilayers, Neutrons, Quartz Crystal Microbalance Techniques, Bacteriorhodopsins
- Abstract
The proton pump transmembrane protein bacteriorhodopsin was successfully incorporated into planar floating lipid bilayers in gel and fluid phases, by applying a detergent-mediated incorporation method. The method was optimized on single supported bilayers by using quartz crystal microbalance, atomic force and fluorescence microscopy techniques. Neutron and X-ray reflectometry were used on both single and floating bilayers with the aim of determining the structure and composition of this membrane-protein system before and after protein reconstitution at sub-nanometer resolution. Lipid bilayer integrity and protein activity were preserved upon the reconstitution process. Reversible structural modifications of the membrane, induced by the bacteriorhodopsin functional activity triggered by visible light, were observed and characterized at the nanoscale., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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35. The dimer-monomer equilibrium of SARS-CoV-2 main protease is affected by small molecule inhibitors.
- Author
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Silvestrini L, Belhaj N, Comez L, Gerelli Y, Lauria A, Libera V, Mariani P, Marzullo P, Ortore MG, Palumbo Piccionello A, Petrillo C, Savini L, Paciaroni A, and Spinozzi F
- Subjects
- Antiviral Agents pharmacology, COVID-19 therapy, Computational Biology, Coronavirus 3C Proteases genetics, Coronavirus 3C Proteases metabolism, Dimerization, Drug Discovery, Humans, Molecular Docking Simulation, Protease Inhibitors pharmacology, Protein Binding, Protein Conformation, Thermodynamics, X-Ray Diffraction, Antiviral Agents chemistry, COVID-19 metabolism, Coronavirus 3C Proteases chemistry, Protease Inhibitors chemistry, SARS-CoV-2 physiology
- Abstract
The maturation of coronavirus SARS-CoV-2, which is the etiological agent at the origin of the COVID-19 pandemic, requires a main protease M
pro to cleave the virus-encoded polyproteins. Despite a wealth of experimental information already available, there is wide disagreement about the Mpro monomer-dimer equilibrium dissociation constant. Since the functional unit of Mpro is a homodimer, the detailed knowledge of the thermodynamics of this equilibrium is a key piece of information for possible therapeutic intervention, with small molecules interfering with dimerization being potential broad-spectrum antiviral drug leads. In the present study, we exploit Small Angle X-ray Scattering (SAXS) to investigate the structural features of SARS-CoV-2 Mpro in solution as a function of protein concentration and temperature. A detailed thermodynamic picture of the monomer-dimer equilibrium is derived, together with the temperature-dependent value of the dissociation constant. SAXS is also used to study how the Mpro dissociation process is affected by small inhibitors selected by virtual screening. We find that these inhibitors affect dimerization and enzymatic activity to a different extent and sometimes in an opposite way, likely due to the different molecular mechanisms underlying the two processes. The Mpro residues that emerge as key to optimize both dissociation and enzymatic activity inhibition are discussed.- Published
- 2021
- Full Text
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36. ApoE and ApoE Nascent-Like HDL Particles at Model Cellular Membranes: Effect of Protein Isoform and Membrane Composition.
- Author
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Waldie S, Sebastiani F, Moulin M, Del Giudice R, Paracini N, Roosen-Runge F, Gerelli Y, Prevost S, Voss JC, Darwish TA, Yepuri N, Pichler H, Maric S, Forsyth VT, Haertlein M, and Cárdenas M
- Abstract
Apolipoprotein E (ApoE), an important mediator of lipid transportation in plasma and the nervous system, plays a large role in diseases such as atherosclerosis and Alzheimer's. The major allele variants ApoE3 and ApoE4 differ only by one amino acid. However, this difference has major consequences for the physiological behaviour of each variant. In this paper, we follow (i) the initial interaction of lipid-free ApoE variants with model membranes as a function of lipid saturation, (ii) the formation of reconstituted High-Density Lipoprotein-like particles (rHDL) and their structural characterisation, and (iii) the rHDL ability to exchange lipids with model membranes made of saturated lipids in the presence and absence of cholesterol [1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) or 1-palmitoyl-2-oleoyl-glycero-3-phosphocholine (POPC) with and without 20 mol% cholesterol]. Our neutron reflection results demonstrate that the protein variants interact differently with the model membranes, adopting different protein conformations. Moreover, the ApoE3 structure at the model membrane is sensitive to the level of lipid unsaturation. Small-angle neutron scattering shows that the ApoE containing lipid particles form elliptical disc-like structures, similar in shape but larger than nascent or discoidal HDL based on Apolipoprotein A1 (ApoA1). Neutron reflection shows that ApoE-rHDL do not remove cholesterol but rather exchange saturated lipids, as occurs in the brain. In contrast, ApoA1-containing particles remove and exchange lipids to a greater extent as occurs elsewhere in the body., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The reviewer DH declared a past co-authorship with one of the authors VF., (Copyright © 2021 Waldie, Sebastiani, Moulin, Del Giudice, Paracini, Roosen-Runge, Gerelli, Prevost, Voss, Darwish, Yepuri, Pichler, Maric, Forsyth, Haertlein and Cárdenas.)
- Published
- 2021
- Full Text
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37. Morphology of bile salts micelles and mixed micelles with lipolysis products, from scattering techniques and atomistic simulations.
- Author
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Pabois O, Ziolek RM, Lorenz CD, Prévost S, Mahmoudi N, Skoda MWA, Welbourn RJL, Valero M, Harvey RD, Grundy MM, Wilde PJ, Grillo I, Gerelli Y, and Dreiss CA
- Subjects
- Lipolysis, Scattering, Small Angle, X-Ray Diffraction, Bile Acids and Salts, Micelles
- Abstract
Hypotheses: Bile salts (BS) are biosurfactants released into the small intestine, which play key and contrasting roles in lipid digestion: they adsorb at interfaces and promote the adsorption of digestive enzymes onto fat droplets, while they also remove lipolysis products from that interface, solubilising them into mixed micelles. Small architectural variations on their chemical structure, specifically their bile acid moiety, are hypothesised to underlie these conflicting functionalities, which should be reflected in different aggregation and solubilisation behaviour., Experiments: The micellisation of two BS, sodium taurocholate (NaTC) and sodium taurodeoxycholate (NaTDC), which differ by one hydroxyl group on the bile acid moiety, was assessed by pyrene fluorescence spectroscopy, and the morphology of aggregates formed in the absence and presence of fatty acids (FA) and monoacylglycerols (MAG) - typical lipolysis products - was resolved by small-angle X-ray/neutron scattering (SAXS, SANS) and molecular dynamics simulations. The solubilisation by BS of triacylglycerol-incorporating liposomes - mimicking ingested lipids - was studied by neutron reflectometry and SANS., Findings: Our results demonstrate that BS micelles exhibit an ellipsoidal shape. NaTDC displays a lower critical micellar concentration and forms larger and more spherical aggregates than NaTC. Similar observations were made for BS micelles mixed with FA and MAG. Structural studies with liposomes show that the addition of BS induces their solubilisation into mixed micelles, with NaTDC displaying a higher solubilising capacity., Competing Interests: Declaration of Competing Interest The authors declared that there is no conflict of interest., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
38. Deciphering lipid transfer between and within membranes with time-resolved small-angle neutron scattering.
- Author
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Perez-Salas U, Garg S, Gerelli Y, and Porcar L
- Subjects
- Cell Membrane, Lipid Bilayers, Neutrons, Scattering, Small Angle, Lipids, Neutron Diffraction
- Abstract
This review focuses on time-resolved neutron scattering, particularly time-resolved small angle neutron scattering (TR-SANS), as a powerful in situ noninvasive technique to investigate intra- and intermembrane transport and distribution of lipids and sterols in lipid membranes. In contrast to using molecular analogues with potentially large chemical tags that can significantly alter transport properties, small angle neutron scattering relies on the relative amounts of the two most abundant isotope forms of hydrogen: protium and deuterium to detect complex membrane architectures and transport processes unambiguously. This review discusses advances in our understanding of the mechanisms that sustain lipid asymmetry in membranes-a key feature of the plasma membrane of cells-as well as the transport of lipids between membranes, which is an essential metabolic process., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
39. On the lipid flip-flop and phase transition coupling.
- Author
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Porcar L and Gerelli Y
- Subjects
- Phase Transition, Temperature, Lipid Bilayers, Phosphatidylcholines
- Abstract
We measured the passive lipid flip-flop of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) in solid supported lipid bilayers across their main gel to fluid (Lβ → Lα) phase transition. By performing time and temperature resolved neutron reflectometry experiments, we demonstrated that asymmetric systems prepared in the gel phase are stable for at least 24 hours. Lipid flip-flop was found to be intrinsically linked to the amount of lipid molecules in the fluid phase. Moreover, the increase of this amount during the broad phase transition was found to be the main key factor for the timing of the flip-flop process. By measuring different temperature scan rate, we could demonstrate that, in the case of supported bilayers and for the temperature investigated, the lipid flip flop is characterised by an activation energy of 50 kJ mol-1 and a timescale on the order of few hours. Our results demonstrate the origin on the discrepancies between passive flip-flop in bulk systems and at interfaces.
- Published
- 2020
- Full Text
- View/download PDF
40. Corrigendum to 'Molecular insights into the behaviour of bile salts at interfaces: a key to their role in lipid digestion'. [Journal of Colloid and Interface Science 556 (2019) 266-277].
- Author
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Pabois O, Lorenz CD, Harvey RD, Grillo I, Grundy MM, Wilde PJ, Gerelli Y, and Dreiss CA
- Published
- 2020
- Full Text
- View/download PDF
41. Spontaneous Formation of Cushioned Model Membranes Promoted by an Intrinsically Disordered Protein.
- Author
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Gerelli Y, Eriksson Skog A, Jephthah S, Welbourn RJL, Klechikov A, and Skepö M
- Subjects
- Cell Membrane, Lipid Bilayers, Membranes, Static Electricity, Intrinsically Disordered Proteins
- Abstract
In this article, it is shown that by exposing commonly used lipids for biomembrane mimicking studies, to a solution containing the histidine-rich intrinsically disordered protein histatin 5, a protein cushion spontaneously forms underneath the bilayer. The underlying mechanism is attributed to have an electrostatic origin, and it is hypothesized that the observed behavior is due to proton charge fluctuations promoting attractive electrostatic interactions between the positively charged proteins and the anionic surfaces, with concomitant counterion release. Hence, we anticipate that this novel "green" approach of forming cushioned bilayers can be an important tool to mimic the cell membrane without the disturbance of the solid substrate, thereby achieving a further understanding of protein-cell interactions.
- Published
- 2020
- Full Text
- View/download PDF
42. Interactions of bile salts with a dietary fibre, methylcellulose, and impact on lipolysis.
- Author
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Pabois O, Antoine-Michard A, Zhao X, Omar J, Ahmed F, Alexis F, Harvey RD, Grillo I, Gerelli Y, Grundy MM, Bajka B, Wilde PJ, and Dreiss CA
- Abstract
Methylcellulose (MC) has a demonstrated capacity to reduce fat absorption, hypothetically through bile salt (BS) activity inhibition. We investigated MC cholesterol-lowering mechanism, and compared the influence of two BS, sodium taurocholate (NaTC) and sodium taurodeoxycholate (NaTDC), which differ slightly by their architecture and exhibit contrasting functions during lipolysis. BS/MC bulk interactions were investigated by rheology, and BS behaviour at the MC/water interface studied with surface pressure and ellipsometry measurements. In vitro lipolysis studies were performed to evaluate the effect of BS on MC-stabilised emulsion droplets microstructure, with confocal microscopy, and free fatty acids release, with the pH-stat method. Our results demonstrate that BS structure dictates their interactions with MC, which, in turn, impact lipolysis. Compared to NaTC, NaTDC alters MC viscoelasticity more significantly, which may correlate with its weaker ability to promote lipolysis, and desorbs from the interface at lower concentrations, which may explain its higher propensity to destabilise emulsions., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
43. Attractive Interaction between Fully Charged Lipid Bilayers in a Strongly Confined Geometry.
- Author
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Mukhina T, Hemmerle A, Rondelli V, Gerelli Y, Fragneto G, Daillant J, and Charitat T
- Abstract
We investigate the interaction between highly charged lipid bilayers in the presence of monovalent counterions. Neutron and X-ray reflectivity experiments show that the water layer between like-charged bilayers is thinner than for zwitterionic lipids, demonstrating the existence of counterintuitive electrostatic attractive interaction between them. Such attraction can be explained by taking into account the correlations between counterions within the Strong Coupling limit, which falls beyond the classical Poisson-Boltzmann theory of electrostatics. Our results show the limit of the Strong Coupling continuous theory in a highly confined geometry and are in agreement with a decrease in the water dielectric constant due to a surface charge-induced orientation of water molecules.
- Published
- 2019
- Full Text
- View/download PDF
44. Molecular insights into the behaviour of bile salts at interfaces: a key to their role in lipid digestion.
- Author
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Pabois O, Lorenz CD, Harvey RD, Grillo I, Grundy MM, Wilde PJ, Gerelli Y, and Dreiss CA
- Subjects
- Animals, Humans, Digestion, Lipids chemistry, Lipolysis, Taurocholic Acid chemistry, Water chemistry
- Abstract
Hypotheses: Understanding the mechanisms underlying lipolysis is crucial to address the ongoing obesity crisis and associated cardiometabolic disorders. Bile salts (BS), biosurfactants present in the small intestine, play key roles in lipid digestion and absorption. It is hypothesised that their contrasting functionalities - adsorption at oil/water interfaces and shuttling of lipolysis products away from these interfaces - are linked to their structural diversity. We investigate the interfacial films formed by two BS, sodium taurocholate (NaTC) and sodium taurodeoxycholate (NaTDC), differing by the presence or absence of a hydroxyl group on their steroid skeleton., Experiments: Their adsorption behaviour at the air/water interface and interaction with a phospholipid monolayer - used to mimic a fat droplet interface - were assessed by surface pressure measurements and ellipsometry, while interfacial morphologies were characterised in the lateral and perpendicular directions by Brewster angle microscopy, X-ray and neutron reflectometry, and molecular dynamics simulations., Findings: Our results provide a comprehensive molecular-level understanding of the mechanisms governing BS interfacial behaviour. NaTC shows a higher affinity for the air/water and lipid/water interfaces, and may therefore favour enzyme adsorption, whereas NaTDC exhibits a higher propensity for desorption from these interfaces, and may thus more effectively displace hydrolysis products from the interface, through dynamic exchange., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
45. A biophysical study of the interactions between the antimicrobial peptide indolicidin and lipid model systems.
- Author
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Nielsen JE, Lind TK, Lone A, Gerelli Y, Hansen PR, Jenssen H, Cárdenas M, and Lund R
- Subjects
- Biophysical Phenomena, Quartz Crystal Microbalance Techniques, X-Ray Diffraction, Anti-Infective Agents pharmacology, Antimicrobial Cationic Peptides chemistry, Lipids chemistry, Membranes, Artificial
- Abstract
The naturally occurring peptide indolicidin from bovine neutrophils exhibits strong biological activity against a broad spectrum of microorganisms. This is believed to arise from selective interactions with the negatively charged cytoplasmic lipid membrane found in bacteria. We have investigated the peptide interaction with supported lipid model membranes using a combination of complementary surface sensitive techniques: neutron reflectometry (NR), atomic force microscopy (AFM), and quartz crystal microbalance with dissipation monitoring (QCM-D). The data are compared with small-angle X-ray scattering (SAXS) results obtained with lipid vesicle/peptide solutions. The peptide membrane interaction is shown to be significantly concentration dependent. At low concentrations, the peptide inserts at the outer leaflet in the interface between the headgroup and tail core. Insertion of the peptide results in a slight decrease in the lipid packing order of the bilayer, although not sufficient to cause membrane thinning. By increasing the indolicidin concentration well above the physiologically relevant conditions, a deeper penetration of the peptide into the bilayer and subsequent lipid removal take place, resulting in a slight membrane thinning. The results suggest that indolicidin induces lipid removal and that mixed indolicidin-lipid patches form on top of the supported lipid bilayers. Based on the work presented using model membranes, indolicidin seems to act through the interfacial activity model rather than through the formation of stable pores., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
46. Phase Transitions in a Single Supported Phospholipid Bilayer: Real-Time Determination by Neutron Reflectometry.
- Author
-
Gerelli Y
- Subjects
- 1,2-Dipalmitoylphosphatidylcholine analogs & derivatives, 1,2-Dipalmitoylphosphatidylcholine chemistry, Neutron Diffraction, Phase Transition, Lipid Bilayers chemistry, Models, Chemical, Phospholipids chemistry
- Abstract
Time- and temperature-resolved neutron reflectometry allowed us to perform the real-time characterization of the structural changes taking place across phase transitions in solid supported-lipid bilayers (SLBs). We identified the presence of an isothermal phase transition, characterized by a symmetrical rearrangement of lipid molecules in both bilayer leaflets, followed by the main thermotropic phase transition, and characterized by an independent melting of the two leaflets. We demonstrated that the presence of a substrate increases the enthalpy of melting by the same amount for both SLB leaflets with respect to the values reported for freestanding bilayers. These results are highly relevant for the further understanding of cooperative structural dynamics in SLBs and for the investigation of thermally activated processes such as the transmembrane lipid translocation (flip flop).
- Published
- 2019
- Full Text
- View/download PDF
47. Structure and Conformation of Wild-Type Bacterial Lipopolysaccharide Layers at Air-Water Interfaces.
- Author
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Micciulla S, Gerelli Y, and Schneck E
- Subjects
- Carbohydrate Conformation, Cations, Divalent chemistry, Elastic Modulus, Escherichia coli, Lipopolysaccharides chemistry
- Abstract
The outer membrane of Gram-negative bacteria is of great scientific interest because it mediates the action of antimicrobial agents. The membrane surface is composed of lipopolysaccharide (LPS) molecules with negatively charged oligosaccharide headgroups. To a certain fraction, LPSs additionally display linear polysaccharides termed O-side chains (OSCs). Structural studies on bacterial outer surfaces models, based on LPS monolayers at air-water interfaces, have so far dealt only with rough mutant LPSs lacking these OSCs. Here, we characterize monolayers of wild-type LPS from Escherichia coli O55:B5 featuring strain-specific OSCs in the presence of defined concentrations of monovalent and divalent ions. Pressure-area isotherms yield insight into in-plane molecular interactions and monolayer elastic moduli. Structural investigations by x-ray and neutron reflectometry reveal the saccharide conformation and allow quantifying the area per molecule and the fraction of LPS molecules carrying OSCs. The OSC conformation is satisfactorily described by the self-consistent field theory for end-grafted polymer brushes. The monolayers exhibit a significant structural response to divalent cations, which goes beyond generic electrostatic screening., (Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
48. Structure of surfactant and phospholipid monolayers at the air/water interface modeled from neutron reflectivity data.
- Author
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Campbell RA, Saaka Y, Shao Y, Gerelli Y, Cubitt R, Nazaruk E, Matyszewska D, and Lawrence MJ
- Subjects
- Air analysis, Models, Chemical, Neutrons, Surface Properties, Thermodynamics, Water chemistry, Phospholipids chemistry, Surface-Active Agents chemistry
- Abstract
Specular neutron reflectometry is a powerful technique to resolve interfacial compositions and structures in soft matter. Surprisingly however, even after several decades, a universal modeling approach for the treatment of data of surfactant and phospholipid monolayers at the air/water interface has not yet been established. To address this shortcoming, first a systematic evaluation of the suitability of different models is presented. The result is a comprehensive validation of an optimum model, which is evidently much needed in the field, and which we recommend as a starting point for future data treatment. While its limitations are openly discussed, consequences of failing to take into account various key aspects are critically examined and the systematic errors quantified. On the basis of this physical framework, we go on to show for the first time that neutron reflectometry can be used to quantify directly in situ at the air/water interface the extent of acyl chain compaction of phospholipid monolayers with respect to their phase. The achieved precision of this novel quantification is ∼10%. These advances together enhance significantly the potential for exploitation in future studies data from a broad range of systems including those involving synthetic polymers, proteins, DNA, nanoparticles and drugs., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
49. Structure and Composition of Native Membrane Derived Polymer-Supported Lipid Bilayers.
- Author
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Pace HP, Hannestad JK, Armonious A, Adamo M, Agnarsson B, Gunnarsson A, Micciulla S, Sjövall P, Gerelli Y, and Höök F
- Subjects
- Animals, Cell Membrane chemistry, Microscopy, Fluorescence methods, Neutron Diffraction methods, Spectrometry, Mass, Secondary Ion methods, Spodoptera chemistry, Biomimetic Materials chemistry, Glycerophospholipids chemistry, Lipid Bilayers chemistry, Polyethylene Glycols chemistry
- Abstract
Over the last two decades, supported lipid bilayers (SLBs) have been extensively used as model systems to study cell membrane structure and function. While SLBs have been traditionally produced from simple lipid mixtures, there has been a recent surge in compositional complexity to better mimic cellular membranes and thereby bridge the gap between classic biophysical approaches and cell experiments. To this end, native cellular membrane derived SLBs (nSLBs) have emerged as a new category of SLBs. As a new type of biomimetic material, an analytical workflow must be designed to characterize its molecular composition and structure. Herein, we demonstrate how a combination of fluorescence microscopy, neutron reflectometry, and secondary ion mass spectrometry offers new insights on structure, composition, and quality of nSLB systems formed using so-called hybrid vesicles, which are a mixture of native membrane material and synthetic lipids. With this approach, we demonstrate that the nSLB formed a continuous structure with complete mixing of the synthetic and native membrane components and a molecular stoichiometry that essentially mirrors that of the hybrid vesicles. Furthermore, structural investigation of the nSLB revealed that PEGylated lipids do not significantly thicken the hydration layer between the bilayer and substrate when on silicon substrates; however, nSLBs do have more topology than their simpler, purely synthetic counterparts. Beyond new insights regarding the structure and composition of nSLB systems, this work also serves to guide future researchers in producing and characterizing nSLBs from their cellular membrane of choice.
- Published
- 2018
- Full Text
- View/download PDF
50. A Versatile Method for the Distance-Dependent Structural Characterization of Interacting Soft Interfaces by Neutron Reflectometry.
- Author
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Micciulla S, Gerelli Y, Campbell RA, and Schneck E
- Abstract
Interactions between soft interfaces govern the behavior of emulsions and foams and crucially influence the functions of biological entities like membranes. To understand the character of these interactions, detailed insight into the interfaces' structural response in terms of molecular arrangements and conformations is often essential. This requires the realization of controlled interaction conditions and surface-sensitive techniques capable of resolving the structure of buried interfaces. Here, we present a new approach to determine the distance-dependent structure of interacting soft interfaces by neutron reflectometry. A solid/water interface and a water/oil interface are functionalized independently and initially macroscopically separated. They are then brought into contact and structurally characterized under interacting conditions. The nanometric distance between the two interfaces can be varied via the exertion of osmotic pressures. Our first experiments on lipid-anchored polymer brushes interacting across water with solid-grafted polyelectrolyte brushes and with bare silicon surfaces reveal qualitatively different interaction scenarios depending on the chemical composition of the two involved interfaces.
- Published
- 2018
- Full Text
- View/download PDF
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