295 results on '"Gnaphalieae"'
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2. Diploid and tetraploid cytotypes of the flagship Cape species Dicerothamnus rhinocerotis (Asteraceae): variation in distribution, ecological niche, morphology and genetics.
- Author
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Chumová, Zuzana, Monier, Zafar, Šemberová, Kristýna, Havlíčková, Eliška, Euston-Brown, Douglas, Muasya, A Muthama, Bergh, Nicola G, and Trávníček, Pavel
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KEYSTONE species , *ECOLOGICAL niche , *GENETICS , *MORPHOLOGY , *ASTERACEAE , *GEOLOGIC hot spots , *SPECIES diversity - Abstract
Background and Aims The Greater Cape Floristic Region is one of the world's biodiversity hotspots and is considered poor in polyploids. To test this assumption, ploidy variation was investigated in a widespread Cape shrub, Dicerothamnus rhinocerotis (renosterbos, Asteraceae). The aim was to elucidate the cytotype distribution and population composition across the species range, and to assess differences in morphology, environmental niches and genetics. Methods Ploidy level and genome size were determined via flow cytometry and cytotype assignment was confirmed by chromosome counting. Restriction site-associated DNA sequencing (RADseq) analyses were used to infer genetic relationships. Cytotype climatic and environmental niches were compared using a range of environmental layers and a soil model, while morphological differences were examined using multivariate methods. Key Results The survey of 171 populations and 2370 individuals showed that the species comprises diploid and tetraploid cytotypes, no intermediates and only 16.8 % of mixed populations. Mean 2C values were 1.80–2.06 pg for diploids and 3.48–3.80 pg for tetraploids, with very similar monoploid genome sizes. Intra-cytotype variation showed a significant positive correlation with altitude and longitude in both cytotypes and with latitude in diploids. Although niches of both cytotypes were highly equivalent and similar, their optima and breadth were shifted due to differences mainly in isothermality and available water capacity. Morphometric analyses showed significant differences in the leaves and corolla traits, the number of florets per capitulum, and cypsela dimensions between the two cytotypes. Genetic analyses revealed four groups, three of them including both cytotypes. Conclusions Dicerothamnus rhinocerotis includes two distinct cytotypes that are genetically similar. While tetraploids arise several times independently within different genetic groups, morphological and ecological differences are evident between cytotypes. Our results open up new avenues for questions regarding the importance of ploidy in the megadiverse Cape flora, and exemplify the need for population-based studies focused on ploidy variation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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3. Phylogeny, biogeography, and character evolution of Anaphalis (Gnaphalieae, Asteraceae).
- Author
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Xue-Min Xu, He Xu, Zheng Yang, Zhen Wei, Jun-Yu Gu, Dan-Hui Liu, Quan-Ru Liu, and Shi-Xin Zhu
- Subjects
BIOLOGICAL classification ,BIOGEOGRAPHY ,RIBOSOMAL DNA ,PHYLOGENY ,NUCLEAR DNA ,ASTERACEAE - Abstract
The HAP clade, mainly including Helichrysum Mill, Anaphalis DC., and Pseudognaphalium Kirp., is a major component of tribe Gnaphalieae (Asteraceae). In this clade, Anaphalis represents the largest genus of Asian Gnaphalieae. The intergeneric relationships among Anaphalis and its related genera and the infrageneric taxonomy of this genus are complex and remain controversial. However, there are few studies that have focused on these issues. Herein, based on the current most comprehensive sampling of the HAP clade, especially Anaphalis, we conducted phylogenetic analyses using chloroplast (cp) genome and nuclear ribosomal DNA (nrDNA) to evaluate the relationships within HAP clade, test the monophyly of Anaphalis, and examine the infrageneric taxonomy of this genus. Meanwhile, the morphological characters were verified to determine the circumscription and infrageneric taxonomy system of Anaphalis. Additionally, the biogeographical history, diversification processes, and evolution of crucial morphological characters were estimated and inferred. Our phylogenetic analyses suggested that Anaphalis is polyphyletic because it nested with Helichrysum and Pseudognaphalium. Two and four main clades of Anaphalis were identified in cp genome and nrDNA trees, respectively. Compared with nrDNA trees, the cp genome trees were more effective for phylogenetic resolution. After comprehensively analyzing morphological and phylogenetic evidence, it was concluded that the achene surface ornamentation and leaf base showed less homoplasy and supported the two Anaphalis lineages that were inferred from cp genome. Our biogeographical analyses based on cp genome indicated that HAP clade underwent rapid diversification from late Miocene to Pliocene. The two Anaphalis lineages appeared to have originated in Africa, then spread to Western and Southern Asia, and subsequently moved into Southwestern China forming a diversity center. The dispersal patterns of the two Anaphalis lineages were different. One dispersed around the world, except in Africa and South America. The other one dispersed to Eastern and Southeastern Asia from the ancestral origin region. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
4. Rediscovery of endangered species Laphangium luteoalbum (Asteraceae) in Lithuania
- Author
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Zigmantas Gudžinskas and Laurynas Taura
- Subjects
annual plant ,conservation ,gnaphalieae ,habitats ,iucn ,threats ,wind-dispersal ,Biology (General) ,QH301-705.5 ,Microbiology ,QR1-502 - Abstract
Laphangium luteoalbum (Asteraceae) is a widely distributed species native to Eurasia; however, it is rare or endangered in some regions of Europe and included into the lists of protected species. In Lithuania, Laphangium luteoalbum was recorded in the southern part of the country, mainly along the banks of the Nemunas River in the 20th century. In contrast, it was found only in the 19th century in the western part of the country. During the research in Curonian Spit National Park (Neringa, western Lithuania), a relatively large species population was found in the transition zone between the dune grassland and wet dune slack habitats. The total population in 2020 consisted of about 500 individuals distributed over an area of about 310 m2. We assume that the seeds of this wind-dispersed plant may have been transferred from other regions of Europe by the wind. However, it cannot be excluded that the plants found are descendants of populations previously recorded in the country. The species is most threatened by the loss of wet, open sandy habitats due to eutrophication of water bodies and subsequent changes in bank vegetation. Laphangium luteoalbum was classified as data deficient (DD) in the last assessment according to the IUCN criteria. Still, a reassessment based on the current data indicates that the species should be considered critically endangered (CR) in Lithuania.
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- 2022
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- View/download PDF
5. The complete chloroplast genome sequence of Anaphalis margaritacea var. yedoensis (Asteraceae) and phylogenetic relationships within Gnaphalieae
- Author
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Taishi Hoson, Takuro Ito, and Masayuki Maki
- Subjects
adaptation ,complete chloroplast genome ,gnaphalieae ,pebbled river banks ,phylogeny ,Genetics ,QH426-470 - Abstract
Anaphalis margaritacea var. yedoensis is a perennial herb adapted to the severe environment of pebbled river banks, where it is frequently found. In this study, we determined the complete chloroplast genome of A. margaritacea var. yedoensis and uncovered its phylogenetic relationships with other members of Gnaphalieae. The total chloroplast genome size of A. margaritaceae var. yedoensis is 153,231 bp, with a large single-copy region (LSC) of 84,981 bp, a small single-copy region (SSC) of 18,481 bp and a pair of inverted repeat (IR) regions of 24,885 bp. A total of 136 genes were annotated, including 39 tRNA genes, 8 rRNA genes, and 89 protein-coding genes. Phylogenetic analysis showed that A. margaritacea var. yedoensis and another Anaphalis species, A. sinica, do not form a monophyletic group, supporting previous phylogenetic studies using some specific regions of cpDNA that showed the genus Anaphalis is non-monophyletic.
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- 2022
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6. Sequence capture data support the taxonomy of Pogonolepis (Asteraceae: Gnaphalieae) and show unexpected genetic structure.
- Author
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Schmidt-Lebuhn, Alexander N.
- Subjects
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TAXONOMY , *ASTERACEAE , *GENETIC testing , *ANTHER , *HETEROZYGOSITY - Abstract
Variation in breeding systems between species of the same taxonomic group complicates the consistent application of species concepts, and perhaps even the logically consistent circumscription of species. Several genera of arid-zone ephemerals in the Angianthus clade (Asteraceae: Gnaphalieae: Gnaphaliinae) contain both outcrossing and non-outcrossing species. The latter are recognised by producing an order of magnitude fewer pollen grains per anther and an often reduced number of corolla lobes, and they are frequently more widespread than are the former. In its current taxonomy, the genus Pogonolepis comprises an otherwise morphologically indistinguishable pair of one outcrossing and one non-outcrossing species. I generated sequence capture data to test the genetic segregation of P. stricta and P. muelleriana and the utility of sequence capture data for species circumscription and diagnostics. Phylogenetic analysis showed the two species to form two specimen clades, supporting the current taxonomy. Contrary to expectations, non-outcrossing P. muelleriana exhibited lower gene concordance, in line with values expected from recombination, as well as higher heterozygosity than its outcrossing sister species. More research on the breeding system and population structure of the two species may be required to explain these results. The genus Pogonolepis comprises an otherwise morphologically indistinguishable pair of one outcrossing and one non-outcrossing species. I generated sequence capture data to test the genetic segregation of P. stricta and P. muelleriana and the utility of sequence capture data for species circumscription and diagnostics. Phylogenetic analysis showed the two species to form two specimen clades, supporting the current taxonomy, but contrary to expectations, non-outcrossing P. muelleriana exhibited lower gene concordance than its outcrossing sister species. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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7. The Utility of DNA Markers for Delimiting and Identifying Species of Gamochaeta (Compositae) in the Eastern United States.
- Author
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Alford, Mac H., Cameron, Kree, and Carter, J. Richard
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GENETIC markers ,SPECIES ,ASTERACEAE ,INTRODUCED species ,GENETIC barcoding ,SPECIES diversity - Abstract
Gamochaeta (Compositae) is a genus of 50–80 herbaceous species with a center of diversity in South America and with several common, generally weedy species in the eastern United States. Historically, some authors recognized as few as one species in the eastern United States while others have recognized as many as eight. These increased numbers are a product of both naturalization of nonnative species and recognition of new taxa. A study was undertaken with DNA markers to assess whether the putative species of this region exhibit genetic differences and to determine if DNA markers may be useful tools for identification. One nuclear and one plastid region of DNA were sequenced, and unique nuclear markers were found for all eight recognized species and unique plastid markers were found for five of the eight species. These results support the species hypotheses for entities in this region. Unlike other genera of the Compositae (e.g., Solidago) that possess little genetic differentiation in commonly used barcoding regions of DNA, the species of Gamochaeta in the eastern United States can be identified using a single nuclear marker, and several may be identified with a single plastid marker. Given that species of Gamochaeta are naturalizing in many places on Earth, these data will provide an important resource for identification. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
8. Rediscovery of endangered species Laphangium luteoalbum (Asteraceae) in Lithuania.
- Author
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Gudžinskas, Zigmantas and Taura, Laurynas
- Subjects
ENDANGERED species ,ASTERACEAE ,EUTROPHICATION ,HABITATS - Abstract
Laphangium luteoalbum (Asteraceae) is a widely distributed species native to Eurasia; however, it is rare or endangered in some regions of Europe and included into the lists of protected species. In Lithuania, Laphangium luteoalbum was recorded in the southern part of the country, mainly along the banks of the Nemunas River in the 20th century. In contrast, it was found only in the 19th century in the western part of the country. During the research in Curonian Spit National Park (Neringa, western Lithuania), a relatively large species population was found in the transition zone between the dune grassland and wet dune slack habitats. The total population in 2020 consisted of about 500 individuals distributed over an area of about 310 m². We assume that the seeds of this wind-dispersed plant may have been transferred from other regions of Europe by the wind. However, it cannot be excluded that the plants found are descendants of populations previously recorded in the country. The species is most threatened by the loss of wet, open sandy habitats due to eutrophication of water bodies and subsequent changes in bank vegetation. Laphangium luteoalbum was classified as data deficient (DD) in the last assessment according to the IUCN criteria. Still, a reassessment based on the current data indicates that the species should be considered critically endangered (CR) in Lithuania. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
9. Phylogenomic data reveal four major clades of Australian Gnaphalieae (Asteraceae).
- Author
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Schmidt‐Lebuhn, Alexander N. and Bovill, Jessica
- Subjects
MORPHOLOGY ,MOUNTAIN plants ,ARID regions ,AUSTRALIANS ,DAISIES - Abstract
Within tribe Gnaphalieae (Asteraceae), the Australasian clade is one of the four major clades. In Australia, the Gnaphalieae account for 488 species or approximately half of the native Asteraceae, encompassing wide ecological and morphological diversity including shrubs, everlasting paper daisies, cudweeds, alpine cushion plants, and ephemeral herbs in the arid zone. The evolution of the Australasian clade is still poorly understood. The most detailed previous infratribal classification of Gnaphalieae has recently been revised, resulting in the recognition of two subtribes, with all Australian species placed in subtribe Gnaphaliinae. The most comprehensive previous phylogeny of Australian Gnaphalieae used high‐copy ribosomal and chloroplast markers but showed limited resolution and branch support. We used conserved ortholog set data produced with sequence capture and 53 chloroplast genes to infer nuclear and chloroplast likelihood phylogenies for Australian Gnaphalieae, generating data for at least one species each from 80 of the 86 native genera. Four major clades were resolved: the Euchiton clade of cudweed‐like and alpine perennial species; the shrubby Cassinia clade; the predominantly perennial and eastern Australian Waitzia clade; and the predominantly ephemeral and western Australian to Eremaean Angianthus clade. The Cassinia, Waitzia, and Angianthus clades are largely congruent with "groups" in a previous morphological analysis and classification of Gnaphalieae. Analysis of ancestral ranges implied the temperate Southeast of Australia as the most likely area of origin for the Australian Gnaphalieae as a whole and for three of the four major clades. The Angianthus clade was implied to be ancestrally Eremaean, with a major secondary radiation originating in southwestern Australia. Our broadly sampled phylogeny provides a framework to inform sampling and design of future studies to test the circumscription of genera. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
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10. Three New Species of Mniodes A. Gray (Gnaphaliinae, Gnaphalieae, Asteraceae) from Bolivia and Peru and Nomenclatural Changes in the Lucilia-Group.
- Author
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Quipuscoa Silvestre, Victor and Dillon, Michael O.
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ASTERACEAE , *SPECIES , *NUCLEOTIDE sequence , *CENTAUREA , *SAUSSUREA - Abstract
Recent studies within the Neotropical members of the Gnaphaliinae (Gnaphalieae, Asteraceae), especially those utilizing DNA sequences, have served to refine putative generic boundaries and clarify internal classification within the subtribe. In preparation of a monographic treatment built upon DNA investigations, we describe here one new species from Bolivia, M. beckii Quip. & M.O. Dillon, sp. nov., and two from Peru, M. montesinosii Quip. & M.O. Dillon, sp. nov., and M. zapatae Quip. & M.O. Dillon, sp. nov. Further, we resurrect a valid name proposed by Weddell (1954), Merope caespititia Wedd., and provide a new combination, Mniodes caespititia (Wedd.) Quip. & M.O.Dillon, comb. nov. A diagnostic key to Mniodes species from Bolivia and Peru is presented. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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11. Plastid genomes provide insights into the phylogeny and chloroplast evolution of the paper daisy tribe Gnaphalieae (Asteraceae).
- Author
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Lao, Xiao-Lin, Meng, Ying, Wu, Jue, Wen, Jun, and Nie, Ze-Long
- Abstract
• The basic structural characteristics of chloroplast genomes of Gnaphalieae were analyzed and compared. • The chloroplast genome size is much reduced for the FLAG clade, but relatively expanded for the others. • Insertion-deletion in intergenic regions are attributed to be the main factor to genome size variances in Gnaphalieae. Chloroplast genomes, as an essential source of phylogenetic information, are increasingly utilized in the evolutionary study of angiosperms. Gnaphalieae is a medium-sized tribe of the sunflower family of Asteraceae, with about 2,100 species in 178 genera distributed in temperate habitats worldwide. There has been considerable progress in our understanding of their phylogenetic evolution using both nuclear and chloroplast sequences, but no focus on chloroplast genomic data. In this study, we performed sequencing, assembly, and annotation of 16 representative chloroplast genomes from all the major lineages of Gnaphalieae. Our results showed that the plastomes exhibited a typical circular tetrad structure with similar genomic structure gene content. But there were differences in genome size, SSRs, and codon usage within the tribe. Phylogenetic analysis revealed Relhania clade is the earliest diverged lineages with the Lasiopogon clade and the Gnaphalium s.s. clade diverged subsequently. The core group includes FLAG clade sister to the HAP and Australasian group. Compared with the outgroup species, chloroplast genome size of the FLAG clade is much reduced whereas those of Australasian, HAP, Gnaphalium s.s., Lasiopogon and Relhania clades are relatively expanded. Insertions and deletions in the intergenic regions associated with repetitive sequence variations are supposed to be the main factor leading to length variations in the chloroplast genomes of Gnaphalieae. The comparative analyses of chloroplast genomes would provide useful implications into understanding the taxonomic and evolutionary history of Gnaphalieae. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
12. The complete chloroplast genome sequence of Anaphalis margaritacea var. yedoensis (Asteraceae) and phylogenetic relationships within Gnaphalieae.
- Author
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Hoson, Taishi, Ito, Takuro, and Maki, Masayuki
- Subjects
CHLOROPLAST DNA ,WHOLE genome sequencing ,GENOME size ,RIPARIAN areas ,ASTERACEAE - Abstract
Anaphalis margaritacea var. yedoensis is a perennial herb adapted to the severe environment of pebbled river banks, where it is frequently found. In this study, we determined the complete chloroplast genome of A. margaritacea var. yedoensis and uncovered its phylogenetic relationships with other members of Gnaphalieae. The total chloroplast genome size of A. margaritaceae var. yedoensis is 153,231 bp, with a large single-copy region (LSC) of 84,981 bp, a small single-copy region (SSC) of 18,481 bp and a pair of inverted repeat (IR) regions of 24,885 bp. A total of 136 genes were annotated, including 39 tRNA genes, 8 rRNA genes, and 89 protein-coding genes. Phylogenetic analysis showed that A. margaritacea var. yedoensis and another Anaphalis species, A. sinica, do not form a monophyletic group, supporting previous phylogenetic studies using some specific regions of cpDNA that showed the genus Anaphalis is non-monophyletic. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
13. Quasiantennaria (Asteraceae, Gnaphalieae), a new genus from the central Andes.
- Author
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Bayer, Randall J. and Dillon, Michael O.
- Abstract
Quasiantennaria R. J. Bayer & M. O. Dillon, a new genus from the central Andes distributed from Peru to Bolivia, is described and illustrated. It is characterized among Andean Gnaphalieae by its dioecious or polygamo-dioecious breeding system, cespitose, perennial herbs, basal rosulate leaves, capitulescences scapose, cymose-corymbose. It most closely resembles Antennaria Gaertn., a typically northern hemispheric genus; however, it differs in its achenial trichomes and relationships suggested by DNA sequence data. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
14. Taxonomic Identity of Gamochaeta americana and Gamochaeta coarctata (Gnaphalieae, Asteraceae)
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Freire, Susana E., Grossi, Mariana A., Iharlegui, Laura, Abarca, Camila L., Monti, Claudia, and Bayón, Néstor D.
- Subjects
Gamochaeta coarctata ,biology ,Asterales ,Biodiversity ,Plant Science ,Asteraceae ,biology.organism_classification ,Gamochaeta ,Tracheophyta ,Magnoliopsida ,Gnaphalium ,Gnaphalieae ,Botany ,Taxonomy (biology) ,Plantae ,Eudicots ,Phenetics ,Ecology, Evolution, Behavior and Systematics ,Taxonomy - Abstract
Gamochaeta (Asteraceae, Gnaphalieae) consists of about 60 species primarily distributed in tropical and subtropical America. Gamochaeta americana and G. coarctata are closely related species that have been mainly differentiated by its phyllary apices, plant height, width of basal leaves, and involucre height. In order to evaluate whether G. americana and G. coarctata can be differentiated on a morphological basis, we performed a morphometric analysis. A matrix of 24 morphological characters and 99 specimens was analyzed using two multivariate approaches: Cluster Analysis and Principal Coordinate Analysis. Both, the dendrogram and the Principal Coordinate Analysis (PCoA), showed that the two species are not clearly distinguished. No discriminating morphological characters for the two species have been found. In conclusion, all available data support that G. coarctata should be considered a synonym of G. americana. Lectotype is designated for Gnaphalium purpureum var. macrophyllum, and G. americana is described and illustrated.
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- 2021
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15. Does arbuscular mycorrhiza favor invasion of some Asteraceae tribes?
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Marina Nikolaevna Mandryk-Litvinkovich, Sofia Valeryevna Sokornova, and Daniil Mikhailovich Malygin
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Arbuscular mycorrhiza ,biology ,Senecio inaequidens ,Gnaphalieae ,Anthemideae ,fungi ,Botany ,Astereae ,food and beverages ,Cichorieae ,Senecioneae ,biology.organism_classification ,Solidago canadensis - Abstract
Invasive species, including more than three dozen Asteraceae, such as Solidago canadensis, Leucanthemum vulgare, Senecio inaequidens etc, pose serious threat to ecosystem health. Arbuscular mycorrhizal symbiosis is a key factor for distribution of invasive species of some Asteraceae tribes, including Astereae, Anthemideae, Senecioneae, Gnaphalieae, Cardueae, and Cichorieae. The formation of invasion-friendly plant communities has occurred through increasing nutrient and water availability, hormonal regulation, production of bioactive compounds, and mycorrhiza-induced resistance of host plants. Native species are displaced through the influence on soil microbiota, mycorrhizal and nutrient status of neighboring plants, and several other parameters. Allelopathic influences and symbiotic interactions with bacteria and other fungi can inhibit these processes. Understanding the mycorrhizal status of invasive weeds, in our opinion, is a necessary condition for their successful control.
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- 2021
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16. The complete chloroplast genome of Helichrysum italicum (Roth) G. Don (Asteraceae)
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Matjaž Hladnik, Alenka Baruca Arbeiter, Tea Knap, Jernej Jakše, and Dunja Bandelj
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chloroplast genome ,helichrysum italicum ,immortelle ,phylogeny ,gnaphalieae ,Genetics ,QH426-470 - Abstract
The aromatic plant immortelle contains valuable bioactive molecules and a unique fragrance. These key factors contribute to its attractiveness and implementation in agricultural ecosystems as well as applications in the pharmaceutical and cosmetic industries. In this study, we have characterized the complete chloroplast genome sequence of Helichrysum italicum subsp. italicum from the North Adriatic region. The total genome size was 152,431 bp in length, containing 85 protein-coding genes, 36 transfer RNA genes, 8 ribosomal RNA genes, and 2 partial genes (ycf1 and rps19). Based on the available chloroplast genomes from Gnaphalieae tribe, the closest relationship was identified with Anaphalis sinica.
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- 2019
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17. Phylogenomic data reveal four major clades of Australian Gnaphalieae (Asteraceae)
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Alexander N. Schmidt-Lebuhn and Jessica Bovill
- Subjects
Gnaphalieae ,Evolutionary biology ,Plant Science ,Biology ,Asteraceae ,Clade ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2021
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18. Comparative plastome analysis of Blumea , with implications for genome evolution and phylogeny of Asteroideae
- Author
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Parviz Heidari, Abdullah, Ibrar Ahmed, Péter Poczai, Furrukh Mehmood, Abdur Rahim, Botany, and Embryophylo
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DYNAMICS ,0106 biological sciences ,CHLOROPLAST GENOMES ,ORGANIZATION ,Asteraceae ,SEQUENCE ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Gnaphalieae ,Anthemideae ,oligonucleotide repeat ,QH540-549.5 ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Nature and Landscape Conservation ,Asteroideae ,0303 health sciences ,Ecology ,biology ,TRANSFER-RNA GENES ,1184 Genetics, developmental biology, physiology ,barcode ,LEVEL PHYLOGENY ,DNA ,Calenduleae ,Senecioneae ,15. Life on land ,11831 Plant biology ,plastome ,biology.organism_classification ,ALIGNMENT ,Inuleae ,Evolutionary biology ,polymorphic loci ,Blumea ,1181 Ecology, evolutionary biology ,MATERNAL INHERITANCE ,Astereae - Abstract
The genus Blumea (Asteroideae, Asteraceae) comprises about 100 species, including herbs, shrubs, and small trees. Previous studies have been unable to resolve taxonomic issues and the phylogeny of the genus Blumea due to the low polymorphism of molecular markers. Therefore, suitable polymorphic regions need to be identified. Here, we de novo assembled plastomes of the three Blumea species B. oxyodonta, B. tenella, and B. balsamifera and compared them with 26 other species of Asteroideae after correction of annotations. These species have quadripartite plastomes with similar gene content, genome organization, and inverted repeat contraction and expansion comprising 113 genes, including 80 protein‐coding, 29 transfer RNA, and 4 ribosomal RNA genes. The comparative analysis of codon usage, amino acid frequency, microsatellite repeats, oligonucleotide repeats, and transition and transversion substitutions has revealed high resemblance among the newly assembled species of Blumea. We identified 10 highly polymorphic regions with nucleotide diversity above 0.02, including rps16‐trnQ, ycf1, ndhF‐rpl32, petN‐psbM, and rpl32‐trnL, and they may be suitable for the development of robust, authentic, and cost‐effective markers for barcoding and inference of the phylogeny of the genus Blumea. Among these highly polymorphic regions, five regions also co‐occurred with oligonucleotide repeats and support use of repeats as a proxy for the identification of polymorphic loci. The phylogenetic analysis revealed a close relationship between Blumea and Pluchea within the tribe Inuleae. At tribe level, our phylogeny supports a sister relationship between Astereae and Anthemideae rooted as Gnaphalieae, Calenduleae, and Senecioneae. These results are contradictory to recent studies which reported a sister relationship between “Senecioneae and Anthemideae” and “Astereae and Gnaphalieae” or a sister relationship between Astereae and Gnaphalieae rooted as Calenduleae, Anthemideae, and then Senecioneae using nuclear genome sequences. The conflicting phylogenetic signals observed at the tribal level between plastidt and nuclear genome data require further investigation.
- Published
- 2021
- Full Text
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19. New combinations in Belloa J. Rémy and new diagnoses for Andean Lucilia Cass. and Mniodes (A.Gray) Benth. (Gnaphalieae, Asteraceae).
- Author
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Dillon, Michael O.
- Subjects
- *
ASTERACEAE , *NUCLEOTIDE sequence , *PLANT species - Abstract
Changes in the generic boundaries, as suggested by DNA sequence data, have altered concepts of Andean Asteraceae, specifically Belloa J. Rémy, Lucilia Cass., and Mniodes (A.Gray) Benth. (Gnaphalieae, Asteraceae). Over the past 30 years, numerous changes in classification and the resulting transfers have generated confusion. This paper provides a short history of these changes and current information for these genera as they exist in Andean South America. Further, other transfers are provided as suggested by results of sequence analysis data and newly proposed generic concepts: Belloa eriophora (J. Rémy) M. O. Dillon, comb. nov., and Belloa nivea (Phil.) M. O. Dillon, comb. nov. Changes in the diagnosis of Mniodes necessitates the following transfers: Mniodes argentea (Wedd.) M. O. Dillon, comb. nov., M. spathulifolia (Sagást. & M. O. Dillon) M. O. Dillon, comb. nov. and M. turneri (Sagást. & M. O. Dillon) M. O. Dillon, comb. nov. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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20. Species-level phylogenetic analysis in the Relhania clade of "everlastings" and a new generic treatment of species previously assigned to Macowania and Arrowsmithia (Asteraceae: Gnaphalieae).
- Author
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Bentley, Joanne, Verboom, G. Anthony, and Bergh, Nicola G.
- Subjects
PLANT phylogeny ,EVERLASTING flowers ,PLANT classification - Abstract
The "Relhania clade" is a relatively species-poor lineage that is sister to the remaining members of the paper daisy tribe Gnaphalieae. Although the monophyly of the Relhania clade is well established, previous molecular studies are based on fairly sparse sampling. Here, we explore clade membership and generic circumscription using plastid and nuclear DNA sequence data, and near-complete species-level sampling of all putative member genera. Two subclades are recovered within the Relhania clade: (i) clade I housing the genera Alatoseta, Athrixia, Pentatrichia and Phagnalon, all monophyletic as currently circumscribed; and (ii) clade II, containing the genera Antithirixia, Comborhiza, Oedera, Oreoleyesera, Relhania and Rosenia; the annual or otherwise "short-lived" genera Leysera, Nestlera and Rhynchopsidium; as well as a subclade in which the monospecific Arrowsmithia is embedded within Macowania. A new taxonomic treatment involving 12 new combinations is proposed for the two latter genera. Only demonstrably monophyletic and diagnosable genera are recognised, involving the erection of a novel monospecific genus, Fluminaria, to house Macowania pinifolia, and the transfer of the remaining members of Macowania to Arrowsmithia. Updated descriptions and keys are provided. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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21. Tracing the origins of hybrids through history: monstrous cultivars and Napoléon Bonaparte’s exiled paper daisies (Asteraceae; Gnaphalieae)
- Author
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Ian Telford, Jeremy J. Bruhl, Timothy L. Collins, Alexander N. Schmidt-Lebuhn, and Rose L. Andrew
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Plant Science ,Asteraceae ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Gnaphalieae ,Botany ,Cultivar ,Ecology, Evolution, Behavior and Systematics ,Hybrid - Abstract
Golden everlasting paper daisies (Xerochrysum, Gnaphalieae, Asteraceae) were some of the earliest Australian native plants to be cultivated in Europe. Reputedly a favourite of Napoléon Bonaparte and Empress Joséphine, X. bracteatum is thought to have been introduced to the island of St Helena in the South Atlantic during Napoléon’s exile there. Colourful cultivars were developed in the 1850s, and there is a widely held view that these were produced by crossing Xerochrysum with African or Asian Helichrysum spp. Recent molecular phylogenetic analyses and subtribal classification of Gnaphalieae cast doubt on this idea. Using single-nucleotide polymorphism (SNP) data, we looked for evidence of gene flow between modern cultivars, naturalized paper daisies from St Helena and four Xerochrysum spp. recorded in Europe in the 1800s. There was strong support for gene flow between cultivars and X. macranthum. Paper daisies from St Helena were genotypically congruent with X. bracteatum and showed no indications of ancestry from other species or from the cultivars, consistent with the continuous occurrence of naturalized paper daisies introduced by Joséphine and Napoléon. We also present new evidence for the origin of colourful Xerochrysum cultivars and hybridization of congeners in Europe from Australian collections.
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- 2021
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22. Genetic diversity, population structure, and ancestry estimation in the<scp>Antennaria rosea</scp>(Asteraceae: Gnaphalieae) polyploid agamic complex
- Author
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Randall J. Bayer, Jennifer R. Mandel, and Ramhari Thapa
- Subjects
Antennaria rosea ,Genetic diversity ,biology ,Polyploid ,Gnaphalieae ,Apomixis ,Population structure ,Botany ,Microsatellite ,Plant Science ,Asteraceae ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2020
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23. Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, Astereae, Calenduleae, Gnaphalieae, and Senecioneae
- Author
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Jennifer R. Mandel, Linda E. Watson, and Carolina M. Siniscalchi
- Subjects
0106 biological sciences ,biology ,Lineage (evolution) ,food and beverages ,Plant Science ,Calenduleae ,Senecioneae ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Gnaphalieae ,Evolutionary biology ,Asteroideae ,Anthemideae ,Phylogenomics ,Astereae ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Asteraceae account for 10% of all flowering plant species, and 35%–40% of these are in five closely related tribes that total over 10 000 species. These tribes include Anthemideae, Astereae, Calenduleae, Gnaphalieae, and Senecioneae, which form one of two enormous clades within Subfamily Asteroideae. We took a phylogenomics approach to resolve evolutionary relationships among these five tribes. We sampled the nuclear and plastid genomes via HybSeq target enrichment and genome skimming, and recovered 74 plastid genes and nearly 1000 nuclear loci, known as Conserved Orthologous Sequences. We tested for conflicting support in both data sets and used network analyses to assess patterns of reticulation to explain the early evolutionary history of this lineage, which has experienced whole‐genome duplications and rapid radiations. We found concordance and conflicting support in both data sets and documented four ancient hybridization events. Due to the timing of the early radiation of this five‐tribe lineage, shortly before the Eocene–Oligocene extinction event (34 MYA), early lineages were likely lost, obscuring some details of their early evolutionary history.
- Published
- 2020
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24. A revised subtribal classification of Gnaphalieae (Asteraceae)
- Author
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Nicola G. Bergh, Mercè Galbany-Casals, Randall J. Bayer, Alexander N. Schmidt-Lebuhn, Josephine M. Ward, Ilse Breitwieser, Rob D. Smissen, and Susana E. Freire
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biology ,Gnaphalieae ,Botany ,Taxonomy (biology) ,Plant Science ,Asteraceae ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2020
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25. Phylogenomics Resolves the Relationships within Antennaria (Asteraceae, Gnaphalieae) and Yields New Insights into its Morphological Character Evolution and Biogeography
- Author
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Ramhari Thapa, Jennifer R. Mandel, and Randall J. Bayer
- Subjects
0106 biological sciences ,0301 basic medicine ,Character evolution ,biology ,Range (biology) ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Coalescent theory ,03 medical and health sciences ,Monophyly ,030104 developmental biology ,Holarctic ,Gnaphalieae ,Evolutionary biology ,Genus ,Genetics ,Antennaria ,Ecology, Evolution, Behavior and Systematics - Abstract
There is an erratum for this article at: https://doi.org/10.1600/036364420X15959578652451 Abstract—Antennaria are dioecious perennial herbs distributed mainly in the Holarctic Region, with their major center of diversity in the Rocky Mountains of Western North America. The genus comprises 33 known sexual diploid/tetraploid species and at least five polyploid agamic complexes which mostly reproduce by forming asexual seeds. We performed a phylogenetic reconstruction of the 31 sexually-reproducing Antennaria species using a novel target enrichment method that employs custom capture probes designed to work across Asteraceae. Both concatenated and coalescent-based analyses of DNA sequence data from hundreds of nuclear loci recovered Antennaria as a monophyletic group except for the long-disputed species, Antennaria linearifolia, which was recovered outside of the genus. Antennaria was further resolved into three distinct, major lineages. Analysis of ancestral state reconstruction of 12 taxonomically important morphological characters elucidated patterns of character evolution throughout the genus. Estimations of ancestral geographic ranges and molecular dating analyses demonstrated the Rocky Mountain region, including the Vancouverian Province, as the center of origin for the genus Antennaria, around 5.8 MYA. Subsequent dispersals of Antennaria into the Arctic and Appalachian provinces, Canadian provinces, and Eurasia took place roughly 3.2 MYA, 2.4 MYA, and 1.6 MYA, respectively. Biogeographical stochastic mapping indicated that 51.4% of biogeographical events were based on within-area speciation. The remaining 48.6% of the events were divided into two types of dispersals: 1) range expansion dispersals (anagenic, 37%), and 2) founder/jump dispersals (cladogenic, 11.6%). Our results provide a framework for future evolutionary studies of Antennaria, including speciation, origin(s) of polyploidy, and agamospermy in the genus.
- Published
- 2020
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26. Achyranthemum N.G.Bergh, a new genus segregated from Syncarpha DC. (Asteraceae, Gnaphalieae)
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Nicola G. Bergh and John C. Manning
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0106 biological sciences ,Indumentum ,Lineage (evolution) ,Plant Science ,Biology ,biology.organism_classification ,Syncarpha ,01 natural sciences ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Taxon ,Synonym (taxonomy) ,Genus ,Gnaphalieae ,Botany ,Helichrysum ,010606 plant biology & botany - Abstract
The genus Syncarpha from the Cape region of South Africa has been shown to comprise two separate lineages based on phylogenetic analysis of plastid and nuclear DNA sequence data. The lineage that does not house the type of Syncarpha corresponds to the ‘Helichrysum paniculatum group’ of species. Here we erect a new genus, Achyranthemum, to house these species, make the necessary nomenclatural changes, and present a taxonomic revision with key, descriptions and distribution maps based on verified records. Achyranthemum comprises seven species confined to the Cape Floristic Region and with the highest concentration of species in the Port Elizabeth region. Species are distinguished by leaf shape and orientation, leaf and peduncle indumentum, colour of the involucral bracts, and capitulum arrangement, as well as other features including differences in edaphic habitat. Nomenclatural and taxonomic investigations indicate that Syncarpha chlorochrysum is a synonym of Syncarpha mucronatum, and that there are two species present in the taxon currently known as Syncarpha argentea.
- Published
- 2019
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27. Clarification of the confusion surrounding the generic name Bryomorphe Harv. (Asteraceae: Gnaphalieae), and the new genus Muscosomorphe J.C.Manning
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John C. Manning and Rafaël Govaerts
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biology ,Plant Science ,Asteraceae ,biology.organism_classification ,Geography ,Synonym (taxonomy) ,Genus ,Gnaphalieae ,Botany ,Dolichothrix ,Taxonomy (biology) ,Bryomorphe ,Nomenclature ,Ecology, Evolution, Behavior and Systematics - Abstract
The monotypic genus Bryomorphe Harv. is found to be homotypic with Klenzea lycopodioides Sch.Bip., which is considered to be a later synonym of Dolichothrix ericoides (Lam.) Hilliard & Burtt, and Bryomorphe is thus a synonym of Dolichothrix. The new genus Muscosomorphe J.C.Manning is proposed to accommodate the species previously included in Bryomorphe as B. aretioides (Turcz) Druce, along with the new combination M. aretioides (Turcz) J.C.Manning.
- Published
- 2021
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28. Recent assembly of the global herbaceous flora: evidence from the paper daisies (Asteraceae: Gnaphalieae).
- Author
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Nie, Ze‐Long, Funk, Vicki A., Meng, Ying, Deng, Tao, Sun, Hang, and Wen, Jun
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- *
DAISIES , *HERBACEOUS plants , *PLANT communities , *PHYTOGEOGRAPHY , *ECOSYSTEMS - Abstract
The global flora is thought to contain a large proportion of herbs, and understanding the general spatiotemporal processes that shaped the global distribution of these communities is one of the most difficult issues in biogeography., We explored patterns of world-wide biogeography in a species-rich herbaceous group, the paper daisy tribe Gnaphalieae (Asteraceae), based on the hitherto largest taxon sampling, a total of 835 terminal accessions representing 80% of the genera, and encompassing the global geographic range of the tribe, with nuclear internal transcribed spacer (ITS) and external transcribed spacer (ETS) sequences., Biogeographic analyses indicate that Gnaphalieae originated in southern Africa during the Oligocene, followed by repeated migrations into the rest of Africa and the Mediterranean region, with subsequent entries into other continents during various periods starting in the Miocene., Expansions in the late Miocene to Pliocene appear to have been the driving force that shaped the global distribution of the tribe as forests were progressively broken up by the mid-continent aridification and savannas and grasslands expanded into the interior of the major continents. This pattern of recent colonizations may explain the world-wide distribution of many other organisms in open ecosystems and it is highlighted here as an emerging pattern in the evolution of the global flora. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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29. Philyrophyllum (Asteraceae) transferred from Gnaphalieae to Athroismeae based on phylogenetic analysis of nuclear and plastid DNA sequence data.
- Author
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Bentley, Joanne, Klaassen, Esmerialda S., and Bergh, Nicola G.
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ASTERACEAE ,PLANT phylogeny ,PLANT morphology ,NUCLEOTIDE sequencing ,PLANT DNA ,MAXIMUM likelihood statistics ,BAYESIAN analysis - Abstract
The small southern African genus Philyrophyllum (Asteraceae) has traditionally been placed amongst the basal lineages of tribe Gnaphalieae, close to the Namibian-centred genus Pentatrichia. However, a recent plastid phylogeny placed Philyrophyllum distant from Pentatrichia within the Gnaphalieae crown radiation, a finding that is strongly contradicted by a suite of morphological synapormorphies that are otherwise unvarying within the crown radiation. In the present study, two linked nuclear loci (ITS, ETS) and one plastid region (trnL-trnF) are sequenced to determine the phylogenetic position of Philyrophyllum, with the addition of available plastid psbA-trnH spacer and ndhF sequences for outgroup taxa. Maximum likelihood bootstrap and Bayesian analysis is used to assess support for phylogenetic relationships. Individual plastid and nuclear, as well as combined data, strongly support a close relationship between Philyrophyllum and the African-centred, morphologically diverse genus Anisopappus, currently placed in subtribe Anisopappinae of the anomalous tribal assemblage Athroismeae. Athroismeae is the sister group of Feddeeae and the "Heliantheae tribal alliance", a large mainly northern hemisphere grouping that is phylogenetically distant from Gnaphalieae. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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30. GNAPHALIOTHAMNUS NESOMII (ASTERACEAE: GNAPHALIEAE), A NEW SPECIES FROM GUATEMALA AND NOMENCLATORIAL CHANGES.
- Author
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Dillon, Michael O. and Luebert, Federico
- Subjects
- *
ASTERACEAE , *CAMPANULALES , *PLANT species , *BOTANICAL nomenclature , *BOTANY terminology - Abstract
Gnaphaliothamnus nesomii M.O. Dillon & Luebert (Asteraceae: Gnaphalieae) is a new species from the Sierra de los Cuchumatanes, Department Huehuetenango, Guatemala. The generic boundaries within the Gnaphalieae have been controversial and the genus Gnaphaliothamnus has not been universally accepted. New molecular phylogenetic studies support the acceptance of Gnaphaliothamnus as distinct from Chionolaena, which is congruent with cypsela trichome morphology. Two Gnaphalium species are transferred as Pseudognaphalium stolonatum (S.F. Blake) M.O. Dillon and P. paramorum (S.F. Blake) M.O. Dillon. [ABSTRACT FROM AUTHOR]
- Published
- 2015
31. The genus Amphiglossa (Gnaphalieae, Relhaniinae, Asteraceae) in southern Africa
- Author
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M. Koekemoer
- Subjects
Amphiglossa DC. ,Asteraceae ,comb ,nov. ,Gnaphalieae ,Pterothrix DC. ,Relhaniinae ,southern Africa ,sp. nov. ,taxonomy ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
It is proposed that the generic concept of Amphiglossa DC. be broadened to include the genus Pterothrix DC. The two genera were previously separated on the presence or absence of ray florets. A thorough study of various characters showed that the type of florets was overemphasised in the past and that the pappus and cypselas provide sufficient evidence to unite the two genera The genus consists of 11 species of which Amphiglossa celans Koekemoer. A. grisea Koekemoer, A. rudolphii Koekemoer and A. susannae Koekemoer are newly described A key to the species as well as detailed descriptions and distribution maps are provided. Photographs are included for each species and key characters for the genus are also illustrated.
- Published
- 1999
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32. Helichrysum × kani-isikii (Asteraceae), a new nothospecies from Turkey
- Author
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Semiz, Gürkan, Şenol, Serdar Gökhan, Günal, Batikan, Çiçek, Mehmet, and Eroğlu, Volkan
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0106 biological sciences ,Evolution ,Plant Science ,Asteraceae ,Flora of Turkey ,medicine.disease_cause ,010603 evolutionary biology ,01 natural sciences ,Magnoliopsida ,taxonomy ,Pollen ,Botany ,medicine ,IUCN Red List ,Nuclear ,Plantae ,Ecology, Evolution, Behavior and Systematics ,Helichrysum ,Palynology ,Gnaphalieae ,hybrid ,biology ,Asterales ,Biodiversity ,biology.organism_classification ,Tracheophyta ,Taxon ,Key (lock) ,Oils ,010606 plant biology & botany - Abstract
In this study, Helichrysum x kani-isikii (Asteraceae), a new natural hybrid of H. compactum and H. unicapitatum from Babadag (Denizli, Turkey), is described and investigated in detail for the first time. The new nothospecies is similar to H. compactum and H. unicapitatum, but it has some intermediate morphological and palynological properties that position it between the two putative parents. In the diagnosis of the hybrid, pollen size and shape were found as significant characteristics. Taxonomic, morphological, and palynological characteristics of H. x kani-isikii are compared with those of its putative parents, and some other details are presented with notes on the IUCN category and ecology of the nothospecies. In addition, a key to diagnosing the hybrid from its parental taxa is also provided., Pamukkale University Scientific Research Coordination Unit [2019KRM004], This research was financially supported by the Pamukkale University Scientific Research Coordination Unit (under project no: 2019KRM004) . The authors are thankful to Merce GALBANY-CASALS for her scientific guidance and valuable comments on manuscript; to Nilufer AYDINLIK for taking SEM micrographs; to Erkan SEKER for technical support during the pollen measurements.
- Published
- 2021
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33. Minimal clustering and species delimitation based on multi-locus alignments vs SNPs: the case of theSeriphium plumosumL. complex (Gnaphalieae: Asteraceae)
- Author
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Zaynab Shaik, G. Anthony Verboom, Nicola G. Bergh, and Bengt Oxelman
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Species complex ,Sample size determination ,Gnaphalieae ,Evolutionary biology ,Locus (genetics) ,Bayes factor ,Replicate ,Biology ,Clade ,biology.organism_classification ,Coalescent theory - Abstract
We applied species delimitation methods based on the Multi-Species Coalescent (MSC) model to 500+ loci derived from genotyping-by-sequencing on the South AfricanSeriphium plumosum(Asteraceae) species complex. The loci were represented either as multiple sequence alignments or single nucleotide polymorphisms (SNPs), and analysed by the STACEY and Bayes Factor Delimitation (BFD)/SNAPP methods, respectively. Both methods supported species taxonomies where virtually all of the 32 sampled individuals, each representing its own geographical population, were identified as separate species. Computational efforts required to achieve adequate mixing of MCMC chains were considerable, and the species/minimal cluster trees identified similar strongly supported clades in replicate runs. The resolution was, however, higher in the STACEY trees than in the SNAPP trees, which is consistent with the higher information content of full sequences. The computational efficiency, measured as effective sample sizes of likelihood and posterior estimates per time unit, was consistently higher for STACEY. A random subset of 56 alignments had similar resolution to the 524-locus SNP data set. The STRUCTURE-like sparse Non-negative Matrix Factorisation (sNMF) method was applied to six individuals from each of 48 geographical populations and 28023 SNPs. Significantly fewer (13) clusters were identified as optimal by this analysis compared to the MSC methods. The sNMF clusters correspond closely to clades consistently supported by MSC methods, and showed evidence of admixture, especially in the western Cape Floristic Region. We discuss the significance of these findings, and conclude that it is important toa prioriconsider the kind of species one wants to identify when using genome-scale data, the assumptions behind the parametric models applied, and the potential consequences of model violations may have.
- Published
- 2021
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34. Achene micro-morphology of Anaphalis DC. (Gnaphalieae-Asteraceae) from China
- Author
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Tao Zhang, Shixin Zhu, Zhen Wei, and Xuemin Xu
- Subjects
Achene ,biology ,Gnaphalieae ,Botany ,Plant Science ,Asteraceae ,biology.organism_classification ,Micro morphology ,Anaphalis - Published
- 2021
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35. Pseudogenization of trnT-GGU in chloroplast genomes of the plant family Asteraceae
- Author
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Furrukh Mehmood, Abdullah, Ibrar Ahmed, Péter Poczai, and Parviz Heidari
- Subjects
0106 biological sciences ,0303 health sciences ,Gene rearrangement ,Biology ,Asteraceae ,biology.organism_classification ,01 natural sciences ,Genome ,Cichorioideae ,03 medical and health sciences ,Gnaphalieae ,Evolutionary biology ,Asteroideae ,Indel ,Gene ,030304 developmental biology ,010606 plant biology & botany - Abstract
The chloroplast genome evolves through the course of evolution. Various types of mutational events are found within the chloroplast genome, including insertions-deletions (InDels), substitutions, inversions, gene rearrangement, and pseudogenization of genes. The pseudogenization of the trnT-GGU gene was previously reported in the Cryptomeria japonica (Cupressaceae), Pelargonium x hortorum (Geraniaceae), and in the two species of the tribe Gnaphalieae (Asteroideae, Asteraceae). Here, we performed a broad analysis of the trnT-GGU gene among the species of twelve subfamilies of Asteraceae and found pseudogenization of this gene is not limited to the two species of Gnaphalieae or the tribe Gnaphalieae. We report for the first time that this gene is pseudo in the species of three subfamilies of Asteraceae, including Gymnarrhenoideae, Cichorioideae and Asteroideae. The analyses of the species of 78 genera of Asteroideae revealed that this pseudogenization event is linked to the insertion within the 5′ acceptor stem and not linked to the habit, habitat, and geographical distribution of the plant.
- Published
- 2021
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36. Conspectus of Helichrysum Mill. sect. Stoechadina (DC.) Gren. & Godr.(Asteraceae, Gnaphalieae)
- Subjects
Helichrysum ,Gnaphalieae ,Nomenclature ,Nomenclatura ,Mediterranean region ,Regió mediterrània - Published
- 2021
37. Conspectus of Helichrysum Mill. sect. Stoechadina (DC.) Gren. & Godr.(Asteraceae, Gnaphalieae)
- Author
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Galbany-Casals, Mercè, Sáez, Llorenç, and Benedí, Carles
- Subjects
Helichrysum ,Gnaphalieae ,Nomenclature ,Nomenclatura ,Mediterranean region ,Regió mediterrània - Abstract
A conspectus of Helichrysum sect. Stoechadina (DC.) Gren. & Godr. is provided. Eight species and five subspecies are recognized. For each accepted taxa all synonyms found in the literature are listed, based on the study of the protologues, the type material, and numerous herbarium specimens comprising the whole distribution area and the variability of each species. Notes on the distribution area are provided. Four names are lectotypified, and references to previous lecotypifications are also presented. Es presenta un conspectus de Helichrysum sect. Stoechadina (DC.) Gren. & Godr. Es reconeixen vuit espècies i cinc subespècies. Per cada taxó acceptat es relacionen tots el sinònims trobats a la bibliografia, a partir de l'estudi dels protòlegs, el material tipus i els nombrosos exemplars d'herbari que comprenen tota l'àrea de distribució i la variabilitat de cada espècie. S'aporten notes sobre l'àrea de distribució. Quatre noms han estat lectotipificats y es presenten també referencies sobre lectotipificacions prèvies.
- Published
- 2021
38. Characterisation of SSR markers for New Zealand Craspedia and their application in Kahurangi National Park.
- Author
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Breitwieser, I, Ford, KA, and Smissen, RD
- Subjects
- *
GENETIC markers in plants , *GENETIC polymorphisms in plants , *RNA sequencing , *PLANT species , *MOUNTAIN plants - Abstract
Twelve polymorphic simple sequence repeat markers were developed from transcribed sequences generated by RNA-seq. These were then used to assess relationships among selected putative species ofCraspediain Kahurangi National Park, New Zealand, including three putative species in sympatry at Mt Arthur; plants from two putative species from the nearby Mt Mytton; and plants from the Marino Mountains, where at least four putative species have been listed. We confirmed that two of the putative species present on Mt Arthur are also present on Mt Mytton, but identified anotherCraspediathere that was previously not recognised as being distinct. At the Marino Mountains the situation appears more complex. One putative species there is clearly distinct from all other plants sampled. However, the remainder of the Marino Mountains plants could not be assigned to genetic groups consistent with the putative species, nor could we clearly relate them to the putative species from Mt Arthur or Mt Mytton. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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39. A new hybrid between two alien Helichrysum species (Compositae, Gnaphalieae) from NW Spain
- Author
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Javier Cremades, Jaime Fagúndez, Mercè Galbany-Casals, and Joan Prunera-Olivé
- Subjects
0106 biological sciences ,Ecology ,biology ,010604 marine biology & hydrobiology ,Introduced species ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Invasive species ,Habitat ,Gnaphalieae ,Helichrysum petiolare ,Helichrysum ,Colonization ,Ecology, Evolution, Behavior and Systematics ,Hybrid - Abstract
Hybridisation events between Invasive Alien Species can contribute to the acquisition of novel traits or a higher fitness through gene exchange and, in consequence, facilitate the adaptation to new environments and the colonization of new territories. Using morphological data and DNA sequences, we have identified and described a new hybrid between Helichrysum petiolare and H. foetidum. Both species are original to South Africa, but have become invasive in the coast of Galicia, NW Spain. The hybrids were raised in the laboratory from achenes collected from H. petiolare in isolated populations far from the core invaded area, but have so far not been found in the wild. Up to now, there is no evidence that the hybrids are themselves fertile. We consider that the risk assessment for these invasive species must take into account the potential crosses in natural areas, a phenomenon with implications in the species capacity to affect the invaded habitats.
- Published
- 2019
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40. Tres nuevas especies de Mniodes A. Gray (Gnaphaliinae, Gnaphalieae, Asteraceae) de Bolivia y Perú y cambios nomenclaturales en el grupo Lucilia
- Author
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Quipuscoa Silvestre, Victor and Dillon, Michael O.
- Subjects
Mniodes ,Andean flora ,Gnaphalieae ,Bolivia ,comb. nov ,Peru ,sp. nov ,Asteraceae - Abstract
Recent studies within the Neotropical members of the Gnaphaliinae (Gnaphalieae, Asteraceae), especially those utilizing DNA sequences, have served to refine putative generic boundaries and clarify internal classification within the subtribe. In preparation of a monographic treatment built upon DNA investigations, we describe here one new species from Bolivia, M. beckii Quip. & M.O. Dillon, sp. nov., and two from Peru, M. montesinosii Quip. & M.O. Dillon, sp. nov., and M. zapatae Quip. & M.O. Dillon, sp. nov. Further, we resurrect a valid name proposed by Weddell (1954), Merope caespititia Wedd., and provide a new combination, Mniodes caespititia (Wedd.) Quip. & M.O.Dillon, comb. nov. A diagnostic key to Mniodes species from Bolivia and Peru is presented. Resumen Estudios recientes dentro de los miembros neotropicales de Gnaphaliinae (Gnaphalieae, Asteraceae), especialmente aquellos que utilizan secuencias de ADN, han servido para refinar los límites genéricos putativos y aclarar la clasificación dentro de la subtribu. En preparación de un tratamiento monográfico basado en investigaciones de ADN, describimos una nueva especie de Bolivia, Mniodes beckii Quip. & M.O. Dillon, sp. nov. y dos especies de Perú, M. montesinosii Quip. & M.O. Dillon, sp. nov. y M. zapatae Quip. & M.O. Dillon, sp. nov. Además, restablecemos un nombre válido propuesto por Weddell (1954), Merope caespititia Wedd., y proporcionamos una nueva combinación, Mniodes caespititia (Wedd.) Quip. & M.O. Dillon, sp. nov. Se presenta también, una clave de diagnóstico para las especies de Mniodes de Bolivia y Perú.
- Published
- 2020
41. Evolutionary history of the arid climate‐adapted Helichrysum (Asteraceae: Gnaphalieae): Cape origin and association between annual life‐history and low chromosome numbers
- Author
-
Nicola G. Bergh, G. Anthony Verboom, Santiago Andrés-Sánchez, and Mercè Galbany-Casals
- Subjects
0106 biological sciences ,Phylogenetic tree ,biology ,Perennial plant ,Zoology ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Basal (phylogenetics) ,Taxon ,Phylogenetics ,Gnaphalieae ,Cape ,Clade ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
The basal grade of the large, widely‐distributed Helichrysum‐Anaphalis‐Pseudognaphalium (HAP) clade (Asteraceae, Gnaphalieae) comprises exclusively southern African taxa. These species possess unusual trait combinations relative to the remaining species (a high proportion of annuals, unusual capitulum arrangement, and low base chromosome numbers). A time‐proportional Bayesian phylogenetic hypothesis is generated from nuclear ribosomal sequences from 110 accessions. Ancestral area, life history, and base chromosome number are reconstructed using maximum likelihood, and correlations between life‐history and chromosome number are tested in a phylogenetic framework. The results show that the HAP clade probably originated and experienced initial diversification in the Greater Cape Floristic Region in the Early to Middle Miocene. The ancestor of the HAP clade is inferred to have been perennial with x = 7 base chromosome number. Several independent acquisitions of the annual life‐history are inferred, accompanied by reductions to x = 4 and 5. A single reversal to perennial life history is associated with a subsequent change back to the state of x = 7. Origin and early diversification within the HAP clade follows the pattern of multi‐area seeded radiations within southern Africa, with subsequent migrations to the rest of Africa and the Northern Hemisphere. Occupation of drier habitats with shorter growing seasons may select for the acquisition of a shorter life‐cycle, and our results indicate a strong association between short life‐cycle and reduced chromosome number.
- Published
- 2019
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42. Erosive processes after tectonic uplift stimulate vicariant and adaptive speciation: evolution in an Afrotemperate-endemic paper daisy genus.
- Author
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Bentley, Joanne, Verboom, G. Anthony, and Bergh, Nicola G.
- Subjects
- *
HABITATS , *PLANT populations , *VICARIANCE , *GENETIC speciation - Abstract
Background The role of tectonic uplift in stimulating speciation in South Africa's only alpine zone, the Drakensberg, has not been explicitly examined. Tectonic processes may influence speciation both through the creation of novel habitats and by physically isolating plant populations. We use the Afrotemperate endemic daisy genus Macowania to explore the timing and mode (geographic versus adaptive) of speciation in this region. Between sister species pairs we expect high morphological divergence where speciation has happened in sympatry (adaptive) while with geographic (vicariant) speciation we may expect to find less morphological divergence and a greater degree of allopatry. A dated molecular phylogenetic hypothesis for Macowania elucidates species' relationships and is used to address the potential impact of uplift on diversification. Morphological divergence of a small sample of reproductive and vegetative characters, used as a proxy for adaptive divergence, is measured against species' range distributions to estimate mode of speciation across two subclades in the genus. Results The Macowania crown age is consistent with the hypothesis of post-uplift diversification, and we find evidence for both vicariant and adaptive speciation between the two subclades within Macowania. Both subclades exhibit strong signals of range allopatry, suggesting that geographic isolation was important in speciation. One subclade, associated with dry, rocky environments at high altitudes, shows very little morphological and ecological differentiation but high range allopatry. The other subclade occupies a greater variety of habitats and exhibits far greater morphological differentiation, but contains species with overlapping distribution ranges. Conclusions Species in Macowania are likely to have diversified in response to tectonic uplift, and we invoke uplift and uplift-mediated erosion as the main drivers of speciation. The greater relative morphological divergence in sympatric species of Macowania indicates that speciation in the non-sympatric taxa may not have required obvious adaptive differences, implying that simple geographic isolation was the driving force for speciation ('neutral speciation'). [ABSTRACT FROM AUTHOR]
- Published
- 2014
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43. Molecular phylogeny of Anaphalis (Asteraceae, Gnaphalieae) with biogeographic implications in the Northern Hemisphere.
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Nie, Ze-Long, Funk, Vicki, Sun, Hang, Deng, Tao, Meng, Ying, and Wen, Jun
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PLANT molecular phylogenetics , *ASTERACEAE , *LIFE zones , *SPECIES diversity - Abstract
Anaphalis is the largest Asian genus in the tribe Gnaphalieae (Asteraceae) and has its greatest species diversity in the eastern Himalayas. The nuclear internal and external transcribed spacers were sequenced for Anaphalis species, with an emphasis on the eastern Himalayan taxa to examine the monophyly and construct the phylogenetic relationships of and within the genus. The results suggest that all species of Anaphalis are nested with Helichrysum, showing a close relationship with a Mediterranean-Asian group of Helichrysum. Although the monophyly of Anaphalis is only weakly supported, two clades within the genus are well recognized, each consisting of two subgroups. The inferred phylogenetic relationships within Anaphalis correspond to the shape of leaf base, rather than the morphology of the capitula and phyllaries that are usually used for species delimitation and classification in the genus. All four subgroups of Anaphalis are common and diversified in the eastern Himalayas with multiple dispersals out of this region. The sole North American species of Anaphalis is best hypothesized to be the result of long-distance dispersal or overland migration via Bering land bridge from Asia. Our analyses suggest that the extant distribution of Anaphalis has most likely resulted one radiation into the eastern Himalayas followed by repeated independent dispersals and/or radiations mostly into eastern Asia but also into the western Himalayas, North America, and southeast Asia. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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44. Three new species of Metalasia (Asteraceae–Gnaphalieae) from the Western Cape and an updated key to the genus
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Bengtson, A., Anderberg, A.A., and Karis, P.O.
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ASTERACEAE , *PLANT species , *PLANT morphology , *PLANT ecology , *ANGIOSPERMS - Abstract
Abstract: Three new species of Metalasia from the Western Cape of South Africa are described; Metalasia tristis A.Bengtson & P.O.Karis, a small shrublet from the Groot Winterhoek Mountains, and Metalasia formosa A.Bengtson & P.O.Karis and Metalasia eburnea A.Bengtson & P.O.Karis both found in the Langeberg Mountains. The morphology and relationships of the three new species are discussed, and an updated key to the genus is provided. [Copyright &y& Elsevier]
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- 2013
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45. Caffeoyl-D-Glucaric Acid Derivatives in the Genus Gnaphalium (Asteraceae: Gnaphalieae).
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Cicek, Serhat Sezai, Untersulzner, Christa, Schwaiger, Stefan, and Zidorn, Christian
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- *
ASTERACEAE , *CHEMOTAXONOMY , *BOTANICAL chemistry , *BIOACTIVE compounds , *PHENOLIC acids , *PLANT extracts , *PHARMACEUTICAL research - Abstract
A chemosystematic survey was carried out to specify whether leontopodic acid and leontopodic acid B, two unique caffeoyl-D-glucaric acid derivatives, recently identified in the emblematic alpine edelweiss (Leontopodium alpinum Cass.) are also found in members of the genus Gnaphalium from the Alps. Gnaphalium is closely related to Leontopodium and both genera are assigned to the Gnaphaliinae subtribe (Asteraceae, Gnaphalieae). In all investigated Gnaphalium species, G. hoppeanum W.D.J.Koch, G. norvergicum Gunnerus, G. supinum L., G. sylvaticum L., and G. uliginosum L., both leontopodic acid and leontopodic acid B were detected. Moreover, a number of related compounds were detected by HPLC/MS and their assumed structures are discussed. The chemosystematic data reported here are of interest to explore new sources for the biologically active compounds leontopodic acid and leontopodic acid B and they also hint to the occurrence of novel caffeoyl-D-glucaric acid derivatives in Gnaphalium not detected in Leontopodium, yet. [ABSTRACT FROM AUTHOR]
- Published
- 2012
46. Inclusion of the Cape genus Anisothrix in the Namibian-centred genus Pentatrichia (Asteraceae, Gnaphalieae) based on a molecular phylogenetic analysis
- Author
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Klaassen, E.S. and Bergh, N.G.
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- *
CLADISTIC analysis , *NUCLEOTIDE sequence , *MOLECULAR evolution , *HYPOTHESIS , *ANIMAL morphology , *BOTANICAL research - Abstract
Abstract: A phylogenetic analysis of the small genus Pentatrichia, containing three species endemic to South Africa and Namibia, was undertaken using nuclear (ITS and 3′ ETS) and chloroplast (trnT–trnL) DNA sequence data. Generic circumscription was examined via the inclusion of appropriate outgroup taxa (Anisothrix and Athrixia). A fully-resolved phylogenetic hypothesis found all Pentatrichia species and subspecies to be reciprocally monophyletic based on three sampled specimens of each taxon. A well-supported sister relationship between the radiate P. rehmii subsp. avasmontana and non-radiate P. rehmii subsp. rehmii confirmed the results of a previous morphometric study. Pentatrichia was found to be non-monophyletic with the exclusion of Anisothrix kuntzei and A. integra, which were placed as a subclade within Pentatrichia, and sister to the type species P. petrosa. Morphological synapomorphies supporting the inclusion of Anisothrix with Pentatrichia are discussed, as well as the evolution of capitulum structure in the group. Anisothrix is synonymised with Pentatrichia and two new combinations were made. The expanded morphological concept of the genus Pentatrichia is presented with a key to all five species. [Copyright &y& Elsevier]
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- 2012
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47. PHYLOGENY AND GENERIC DELIMITATION OF THE METALASIA CLADE (ASTERACEAE-GNAPHALIEAE).
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Bengtson, Annika, Anderberg, Arne A., and Karis, Per Ola
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- *
ASTERACEAE , *CLADISTIC analysis of plants , *PLANT molecular phylogenetics , *PLANT genetics , *CHLOROPLASTS , *NUCLEOTIDE sequence , *PLANT species - Abstract
The Metalasia clade, which consists of the genus Metalasia and a number of much smaller satellite genera, is a South African group in the tribe Gnaphalieae (Asteraceae). This study scrutinizes the phylogenetic relationships of the Metalasia clade by means of chloroplast (trnL-trnF, psbA-trnH) and nuclear (external transcribed spacer , internal transcribed spacer) sequence data. The Metalasia clade is confirmed to be a monophyletic group, and the phylogenetic positions of the included genera are determined. The genus Metalasia may be monophyletic if the monotypic Planea is included, but the node has very poor support and further studies are needed. The Metalasia species fall into two well-supported groups, distinguishing the members of Karis's Metalasia densa group from the others. Lachnospermum is shown to be monophyletic and is placed as a possible sister group to Metalasia. Phaenocoma is placed as sister to the branch consisting of Metalasia and Lachnospermum. Calotesta, Hydroidea, and Atrichantha form a clade, with the monotypic Dolichothrix as their sister group. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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48. Phylogeny of the "Ifloga clade" (Asteraceae, Gnaphalieae), a lineage occurring disjointly in the Northern and Southern Hemisphere, and inclusion of Trichogyne in synonymy with Ifloga.
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Bergh, Nicola C., Trisos, Christopher H., and Verboom, George A.
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ASTERACEAE ,BIOLOGICAL evolution ,PHYLOGENY ,BIOLOGY ,NUCLEOTIDE sequence - Abstract
Ifloga and Trichogyne constitute a small but biologically interesting lineage within the tribe Gnaphalieae (Asteraceae). Species are distributed mainly in the semi-arid parts of southern Africa, but there is a disjunction to the Saharo-Sindian region where three species occur. Due partly to an unusual capitulum structure, the phylogenetic position of the group has been little understood. In addition, the monophyly of the genera has not been assessed using phylogenetic methods. A species-level phylogenetic hypothesis is presented, based on one nuclear and two chloroplast DNA regions, analysed with parsimony and Bayesian methods. Ifloga+Trichogyne constitute the "Ifloga clade" that forms one of the early-diverging lineages within Gnaphalieae. These lineages constitute a basal grade with many poorly supported nodes, precluding robust hypotheses of relationships amongst the lineages. A sister lineage to the Ifloga clade could thus not be identified, although it diverges amongst taxa formerly united in subtribe Relhaniinae. Although this subtribe is now known to be non-monophyletic, members of the Ifloga clade share with former members of Relhaniinae a previously overlooked set of leaf characters. The genus Trichogyne is monophyletic, but Ifloga is paraphyletic with respect to Trichogyne. To retain generic monophyly, all species are here transferred to the genus Ifloga. Although two of the Northern-Hemisphere species were not included in the analysis, morphological characters suggest that the three species from this region are monophyletic, in which case the Saharo-Sindian distribution is the result of a single dispersal northwards from Southern Africa. A new combination and an updated key to the species are presented. [ABSTRACT FROM AUTHOR]
- Published
- 2011
49. ANOMALOUS CAPITULUM STRUCTURE AND MONOECY MAY CONFER FLEXIBILITY IN SEX ALLOCATION AND LIFE HISTORY EVOLUTION IN THE IFLOGA LINEAGE OF PAPER DAISIES (COMPOSITAE: GNAPHALIEAE).
- Author
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BERGH, NICOLA G. and VERBOOM, G. ANTHONY
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BOTANICAL research , *ANNUALS (Plants) , *PERENNIALS , *SEX allocation , *SEX ratio among plants - Abstract
* Premise of the study: Evolutionary significance of the Compositae capitulum and variation in its structure is poorly understood, although it may permit flexibility in sexual expression. Optimal sex ratio differs with life-history and reproductive strategy. We explore how the genus Ifloga and related members of southern African Gnaphalieae achieved different sex ratios, and the associations of these ratios with annual and perennial life history. * Methods: Sex allocation was measured using the male to female ratio (M/F), a novel approximator of the pollen to ovule ratio (P/O). Life-history (annuality/perenniality), capitulum structure, capitular sexual system, and M/F were reconstructed on time-proportional phylogenies. Trait associations were examined using phylogenetically independent contrasts (PICs). * Key results: Annual taxa have strongly female-biased capitula, as measured by M/F, and either gynomonoecious or monoecious sexual systems, while perennials have equal or male-biased capitula that are hermaphroditic or monoecious. These results are largely supported by PIC analysis. Different sexual systems afford differing flexibility in sex allocation, with hermaphrodites having the least, and monoecious taxa the greatest, range in M/F. Within Ifloga, the anomalous capitulum evolved in an annual, gynomonoecious ancestor, followed by two independent gains of monoecy. Two subsequent gains of perenniality occurred within a monoecious sublineage. * Conclusions: Different life histories have divergent sex allocation optima and are strongly associated with different sexual systems in gnaphalioid daisies. An anomalous capitulum structure in Ifloga may have facilitated the evolution of monoecy, which in turn may be linked to the evolution of life-history diversity in the genus. Key words: annual; capitulum; Gnaphalieae; gynomonoecy; Ifloga; life-history evolution; monoecy; perennial; sex allocation; sex ratio; sexual system. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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50. A nomenclatural treatment for Logfia Cass. and Filago L. (Asteraceae) as newly circumscribed: Typification of several names.
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Andrés-Sánchez, Santiago, Galbany-Casals, Mercè, Rico, Enrique, and Martinez-Ortega, M. Montserrat
- Subjects
FILAGO ,ASTERACEAE ,EPITOPES ,TAXONOMY ,NAMES - Abstract
A complete nomenclatural treatment of the genera Filago L. and Logfia Cass. is provided, as well as a list of the species included in each genus and subgenus, as they have been newly circumscribed. Nomenclatural types for eleven validly published species names are designated, which correspond to (1) the types of names of widely used and long-established genera or subgenera, (2) the names of species that have been chosen as types of the names of newly described or newly delimited subgenera, or (3) recently proposed new combinations at the specific level. In total, one subgeneric name is typified and eleven lectotypes, five epitypes and one neotype are chosen. Among those, a previous attempted typification of F. pygmaea L. is shown to be inadmissible and a new lectotype is chosen and an epitype is selected to support interpretation of a previously designated lectotype. The need to conserve the name F. vulgaris to preserve current usage is documented. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
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