67 results on '"Goos T"'
Search Results
2. Lung Ultrasound as a Screening Tool in Rheumatoid Arthritis
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Vermant, M., primary, Kalkanis, A., additional, Jacob, J., additional, Goos, T., additional, Cortesi, E.E., additional, Cypers, H., additional, De Crem, N., additional, De Sadeleer, L., additional, Gogaert, S., additional, Neerinckx, B., additional, Taelman, V., additional, Veyt, N., additional, Verschueren, P., additional, and Wuyts, W.A., additional
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- 2024
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3. Characterization of Small Airway Obstruction Diversity in COPD
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Geudens, V., primary, De Fays, C., additional, Willems, L., additional, Vermaut, A., additional, Aerts, G., additional, Kerckhof, P., additional, Goos, T., additional, Kaes, J., additional, Hooft, C., additional, Jin, X., additional, Beeckmans, H., additional, Khaled Mohamed Elm Mohamady, Y., additional, Aversa, L., additional, Vermant, M., additional, Gyselinck, I., additional, Verhaegen, J., additional, Van Slambrouck, J., additional, Aelbrecht, C., additional, Higham, A., additional, Cortesi, E., additional, Vanstapel, A., additional, McDonough, J.E., additional, Carlon, M.S., additional, Quarck, R., additional, Boone, M., additional, Dupont, L., additional, Weynand, B., additional, Pilette, C., additional, Van Raemdonck, D.E., additional, Ceulemans, L.J., additional, Hogg, J.C., additional, Hackett, T.-L., additional, Vos, R., additional, Wuyts, W.A., additional, Janssens, W., additional, Vanaudenaerde, B., additional, and Gayan-Ramirez, G., additional
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- 2024
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4. Expression of Exposed CLDN1 Is Linked to Early Pathological Lesions in Idiopathic Pulmonary Fibrosis
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Cortesi, E.E., primary, Anquetil, V., additional, Mcdonough, J.E., additional, Weynand, B., additional, Vanstapel, A., additional, Aelbrecht, C., additional, Aversa, L., additional, Aerts, G., additional, Geudens, V., additional, Xin, J., additional, Vermant, M., additional, Goos, T., additional, Gogaert, S., additional, Mohamady, Y.K.M.E., additional, Polini, E., additional, Toso, A., additional, El Saghire, H., additional, Meyer, M., additional, Baumert, T., additional, Toovey, S., additional, Manenti, L., additional, Iacone, R., additional, Christ, F., additional, Vanaudenaerde, B.M., additional, Teixeira, G., additional, De Sadeleer, L.J., additional, Wuyts, W.A., additional, and Carlon, M.S., additional
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- 2024
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5. Development of a Web-Based Oxygenation Dashboard for Preterm Neonates:A Quality Improvement Initiative
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Poppe, J. A., Smorenburg, R. S., Goos, T. G., Taal, H. R., Reiss, I. K.M., Simons, S. H.P., Poppe, J. A., Smorenburg, R. S., Goos, T. G., Taal, H. R., Reiss, I. K.M., and Simons, S. H.P.
- Abstract
Background: Preterm neonates are extensively monitored to require strict oxygen target attainment for optimal outcomes. In daily practice, detailed oxygenation data are hardly used and crucial patterns may be missed due to the snapshot presentations and subjective observations. This study aimed to develop a web-based dashboard with both detailed and summarized oxygenation data in real-time and to test its feasibility to support clinical decision making. Methods: Data from pulse oximeters and ventilators were synchronized and stored to enable real-time and retrospective trend visualizations in a web-based viewer. The dashboard was designed based on interviews with clinicians. A preliminary version was evaluated during daily clinical rounds. The routine evaluation of the respiratory condition of neonates (gestational age < 32 weeks) with respiratory support at the NICU was compared to an assessment with the assistance of the dashboard. Results: The web-based dashboard included data on the oxygen saturation (SpO2), fraction of inspired oxygen (FiO2), SpO2/FiO2 ratio, and area < 80% and > 95% SpO2 curve during time intervals that could be varied. The distribution of SpO2 values was visualized as histograms. In 65% of the patient evaluations (n = 86) the level of hypoxia was assessed differently with the use of the dashboard. In 75% of the patients the dashboard was judged to provide added value for the clinicians in supporting clinical decisions. Conclusions: A web-based customized oxygenation dashboard for preterm neonates at the NICU was developed and found feasible during evaluation. More clear and objective information was found supportive for clinicians during the daily rounds in tailoring treatment strategies.
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- 2024
6. SOUNDscapes: A dashboard for promoting a healthy sound environment inside the Neonatal Intensive Care Unit
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Spagnol, S., primary, Viñas Vila, N., additional, Salah, A.A., additional, Goos, T., additional, and Ozcan, E., additional
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- 2024
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7. Correspondence Between Audible Crackles and Lung Function Test Results
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Gogaert, S., primary, Goos, T., additional, Vermant, M., additional, Carlon, M.S., additional, De Crem, N., additional, De Sadeleer, L., additional, De Langhe, E., additional, Dubbeldam, A., additional, Vanaudenaerde, B., additional, Verschakelen, J., additional, Weynand, B., additional, Yserbyt, J., additional, Bertrand, A., additional, De Vos, M., additional, and Wuyts, W.A., additional
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- 2023
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8. Current Definitions of Progressive Pulmonary Fibrosis Might Be Inaccurate: Data From a Cohort of Patients With Rheumatoid Arthritis Associated Interstitial Lung Disease
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Vermant, M., primary, Goos, T., additional, Gogaert, S., additional, Carlon, M.S., additional, De Crem, N., additional, De Sadeleer, L., additional, De Langhe, E., additional, Dubbeldam, A., additional, Vanaudenaerde, B., additional, Verbeken, E., additional, Verschakelen, J., additional, Weynand, B., additional, Yserbyt, J., additional, Westhovens, R., additional, Verschueren, P., additional, and Wuyts, W.A., additional
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- 2023
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9. Morphometrics and Mucosal Immune Features in Lungs With End-stage Chronic Obstructive Pulmonary Disease
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De Fays, C., primary, Beeckmans, H., additional, Kerckhof, P., additional, Geudens, V., additional, Vermaut, A., additional, Gyselinck, I., additional, Goos, T., additional, Vermant, M., additional, Kaes, J., additional, Van Slambrouck, J., additional, Mohamady, Y., additional, Willems, L., additional, Aversa, L., additional, Maes, K., additional, Aelbrecht, C., additional, Everaerts, S., additional, Mcdonough, J.E., additional, De Sadeleer, L.J., additional, Gohy, S., additional, Ambroise, J., additional, Wuyts, W.A., additional, Janssens, W.L.H., additional, Ceulemans, L.J., additional, Van Raemdonck, D.E.M., additional, Vos, R., additional, Hackett, T.-L., additional, Hogg, J.C., additional, Kaminski, N., additional, Pilette, C., additional, Gayan-Ramirez, G., additional, and Vanaudenaerde, B., additional
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- 2023
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10. Intrafamilial Correlation and Variability in the Clinical Evolution of Pulmonary Fibrosis
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Goos, T., primary, Dubbeldam, A., additional, Vermant, M., additional, Gogaert, S., additional, De Sadeleer, L.J., additional, De Crem, N., additional, De Langhe, E., additional, Yserbyt, J., additional, Weynand, B., additional, Carlon, M.S., additional, Verschakelen, J., additional, Vermeer, S., additional, Verleden, S.E., additional, and Wuyts, W.A., additional
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- 2023
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11. Morphometric Airway Changes in Explanted Human Lungs with Chronic Lung Allograft Dysfunction
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Kerckhof, P., primary, Ambrosio, G.P., additional, Beeckmans, H., additional, Kaes, J., additional, Geudens, V., additional, Slambrouck, J., additional, Bos, S., additional, Vermant, M., additional, Aelbrecht, C., additional, Lynn, W., additional, Astrid, V., additional, Aversa, L., additional, Mohamady, Y., additional, Jin, X., additional, Charlotte, D., additional, Goos, T., additional, Iwein, G., additional, Vanstapel, A., additional, Orlitova, M., additional, Boone, M., additional, Janssens, W., additional, Josipovic, I., additional, Varghese, V., additional, Dupont, L., additional, Godinas, L., additional, Verleden, G., additional, Van Raemdonck, D., additional, Ceulemans, L., additional, Neyrinck, A., additional, McDonough, J., additional, Gayan-Ramirez, G., additional, Vanaudenaerde, B., additional, and Vos, R., additional
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- 2023
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12. Family history of ILD predicts pulmonary function decline in IPF patients
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Goos, T, primary, Vermant, M, additional, De Sadeleer, L J, additional, Verstraete, K, additional, De Crem, N, additional, De Langhe, E, additional, Dubbeldam, A, additional, Verbeken, E K, additional, Verschakelen, J, additional, Weynand, B, additional, Yserbyt, J, additional, Vermeer, S, additional, Verleden, S E, additional, and Wuyts, W A, additional
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- 2022
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13. Terminal bronchioles decrease before emphysematous destruction and adaptive immune response in human explant lungs with COPD
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de Fays, C, primary, Beeckmans, H, additional, Kerckhof, P, additional, Geudens, V, additional, Vermaut, A, additional, Gyselinck, I, additional, Goos, T, additional, Vermant, M, additional, Kaes, J, additional, Aelbrecht, C, additional, Maes, K, additional, Mohamady, Y, additional, Aversa, L, additional, Everaerts, S, additional, Mcdonough, J E, additional, De Sadeleer, L J, additional, Gohy, S, additional, Ambroise, J, additional, Wuyts, W A, additional, Janssens, W, additional, Ceulemans, L J, additional, Van Raemdonck, D E, additional, Vos, R, additional, Kaminski, N, additional, Pilette, C, additional, Gayan-Ramirez, G, additional, and Vanaudenaerde, B M, additional
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- 2022
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14. Airway remodeling in COVID-19 lungs
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Geudens, V, primary, Van Slambrouck, J, additional, Aerts, G, additional, Willems, L, additional, Goos, T, additional, Kaes, J, additional, Gyselinck, I, additional, Aelbrecht, C, additional, Vermaut, A, additional, Beeckmans, H, additional, Vermant, M, additional, De Fays, C, additional, Sacreas, A, additional, Aversa, L, additional, Verstraete, K, additional, Orlitová, M, additional, Vanstapel, A, additional, E. Mcdonough, J, additional, Pilette, C, additional, Janssens, W, additional, A. Wuyts, W, additional, M. Verleden, G, additional, E. Van Raemdonck, D, additional, Vos, R, additional, Gayan-Ramirez, G, additional, J. Ceulemans, L, additional, and M. Vanaudenaerde, B, additional
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- 2022
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15. Evolution of diffusion capacity in interstitial lung disease associated with rheumatoid arthritis
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Vermant, M, primary, Goos, T, additional, Bode, H, additional, De Sadeleer, L J, additional, Verstraete, K, additional, De Crem, N, additional, De Langhe, E, additional, Dubbeldam, A, additional, Verbeken, E, additional, Verschakelen, J, additional, Weynand, B, additional, Yserbyt, J, additional, Westhovens, R, additional, Verschueren, P, additional, and Wuyts, W A, additional
- Published
- 2022
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16. An in depth study of morphological small airway changes in explant lungs with end stage COPD
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de Fays, C, primary, Geudens, V, additional, Beeckmans, H, additional, Vermaut, A, additional, Gyselinck, I, additional, Goos, T, additional, Vermant, M, additional, Kaes, J, additional, Aelbrecht, C, additional, Maes, K, additional, Mohamady, Y, additional, Willems, L, additional, Aversa, L, additional, Everaerts, S, additional, Mcdonough, J E, additional, De Sadeleer, L, additional, Gohy, S, additional, Wuyts, W A, additional, Janssens, W, additional, Ceulemans, L J, additional, Van Raemdonck, D E, additional, Vos, R, additional, Pilette, C, additional, Gayan-Ramirez, G, additional, and Vanaudenaerde, B M, additional
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- 2022
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17. BAL Transcriptomes Characterize Idiopathic Pulmonary Fibrosis Endotypes with Prognostic Impact
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Sadeleer, L.J. de, Verleden, S.E., Schupp, J.C., McDonough, J.E., Goos, T., Yserbyt, J., Bargagli, E., Rottoli, P., Kaminski, N., Prasse, Antje, Wuyts, W.A., and Publica
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endotyping ,IPF ,gene expression - Abstract
Background: Given the plethora of pathophysiologic mechanisms described in idiopathic pulmonary fibrosis (IPF), we hypothesize that the mechanisms driving fibrosis in IPF may be different from one patient to another. Research Question: Do IPF endotypes exist and are they associated with outcome? Study Design and Methods: Using a publicly available gene expression dataset retrieved from BAL samples of patients with IPF and control participants (GSE70867), we clustered IPF samples based on a dimension reduction algorithm specifically designed for -omics data, called DDR Tree. After clustering, gene set enrichment analysis was performed for functional annotation, associations with clinical variables and prognosis were investigated, and differences in transcriptional regulation were determined using motif enrichment analysis. The findings were validated in three independent publicly available gene expression datasets retrieved from IPF blood samples. Results: One hundred seventy-six IPF samples from three centers were clustered in six IPF clusters, with distinct functional enrichment. Although clinical characteristics did not differ between the clusters, one cluster conferred worse sex-age-physiology score-corrected survival, whereas another showed a numeric trend toward worse survival (P = .08). The first was enriched for increased epithelial and innate and adaptive immunity signatures, whereas the other showed important telomere and mitochondrial dysfunction, loss of proteostasis, and increased myofibroblast signatures. The existence of these two endotypes, including the impact on survival of the immune endotype, was validated in three independent validation cohorts. Finally, we identified transcription factors regulating the expression of endotype-specific survival-associated genes. Interpretation: Gene expression-based endotyping in IPF is feasible and can inform clinical evolution. As endotype-specific pathways and survival-associated transcription factors are identified, endotyping may open up the possibility of endotype-tailored therapy.
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- 2022
18. Phenotypical Characterization of Airway Morphology in Post-Infectious vs Post-Lung Transplantation Bronchiolitis Obliterans
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Vanstapel, A., primary, Weynand, B., additional, De Zutter, A., additional, Dubbeldam, A., additional, De Sadeleer, L., additional, Kaes, J., additional, Verbeken, E., additional, Ceulemans, L., additional, Geudens, V., additional, Goos, T., additional, Gyselinck, I., additional, Van Raemdonck, D., additional, Neyrinck, A., additional, Dupont, L., additional, Boon, M., additional, Boone, M., additional, Vanaudenaerde, B., additional, Vos, R., additional, Verleden, G., additional, and Verleden, S., additional
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- 2021
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19. Dynamic light scattering:a new noninvasive technology for neonatal heart rate monitoring
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Gangaram-Panday, N., van Essen, T., Goos, T., de Jonge, R., Reiss, I., van Weteringen, W., Gangaram-Panday, N., van Essen, T., Goos, T., de Jonge, R., Reiss, I., and van Weteringen, W.
- Abstract
Background: Heart rate (HR) detection in premature infants using electrocardiography (ECG) is challenging due to a low signal amplitude and the fragility of the premature skin. Recently, the dynamic light scattering (DLS) technique has been miniaturized, allowing noninvasive HR measurements with a single sensor. Objective: The aim was to determine the accuracy of DLS for HR measurement in infants, compared to ECG-derived HR. Methods: Stable infants with a gestational age of ≥26 weeks, monitored with ECG, were eligible for inclusion. HR was measured with the DLS sensor at 5 different sites for 15 min each. We recorded every 10th second of the DLS-derived HR and the DLS signal-to-noise ratio (SNR), and the ECG-derived HR was extracted for analysis. Patients were randomly divided into 2 groups. In the first group, the optimal SNR cut-off value was determined and then applied to the second group to assess agreement. Results: HR measurements from 31 infants were analyzed. ECG-DLS paired data points were collected at the forehead, an upper extremity, the thorax, a lower extremity, and the abdomen. When applying the international accuracy standard for HR detection, DLS accuracy in the first group (n = 15) was optimal at the forehead (SNR cut-off 1.66). Application of this cut-off to the second group (n = 16) showed good agreement between DLS-derived HR and ECG-derived HR (bias –0.73 bpm; 95% limits of agreement –15.46 and 14.00 bpm) at the forehead with approximately 80% (i.e., 1,066/1,310) of all data pairs remaining. Conclusion: The investigated DLS sensor was sensitive to movement, overall providing less accurate HR measurements than ECG and pulse oximetry. In this study population, specific measurement sites provided excellent signal quality and good agreement with ECG-derived HR.
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- 2020
20. (108) Morphometric Airway Changes in Explanted Human Lungs with Chronic Lung Allograft Dysfunction
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Kerckhof, P., Ambrosio, G.P., Beeckmans, H., Kaes, J., Geudens, V., Slambrouck, J., Bos, S., Vermant, M., Aelbrecht, C., Lynn, W., Astrid, V., Aversa, L., Mohamady, Y., Jin, X., Charlotte, D., Goos, T., Iwein, G., Vanstapel, A., Orlitova, M., Boone, M., Janssens, W., Josipovic, I., Varghese, V., Dupont, L., Godinas, L., Verleden, G., Van Raemdonck, D., Ceulemans, L., Neyrinck, A., McDonough, J., Gayan-Ramirez, G., Vanaudenaerde, B., and Vos, R.
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- 2023
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21. Big data in neonatology, time for a standard
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Goos, T. G., Mauff, K. A. L., Bruining, N., De Jonge, R. C. J., Rizopoulos, D., Reiss, I. K. M., Pediatrics, Epidemiology, and Erasmus MC other
- Abstract
Background: Big data is a hot topic and provides an unprecedented opportunity to improve care on the neonatal intensive care unit. Personalization and predictive models can be developed as long as enough of the right data is available. But data acquisition is usually not implemented in a way that all the raw measurement data is stored. Let alone that all clinical events are registered. Methods: Collecting all patient monitoring data together with the clinical events helps us to learn from our patients. It enables the development of more personalized care, better visualization of data and the development of dynamic predictive models. Systems like HERO (Medical Predictive Science Corporation), expediting the diagnosis and treatment of septic patients with a day, show the potential of such models. Models developed in one center need to be validated in other centers in order to be truly useful. This is only possible with (international) collaborations. Standardization of data storage and annotation are crucial. Results: The Erasmus MC - Sophia Children's Hospital has started with logging all the real-time data from their neonatal patients. The intention is to set up a European network together with other NICU's to enable to store and share big data and develop and validate dynamic predictive models. Conclusions: Big data and predictive models might well be the next game changer in neonatology after surfactant and the pulse oximeter. But the full potential is only unlocked when collaborations are formed such that the developed models are widely applicable.
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- 2017
22. Profiling oxygenation and microcirculation in healthy newborns at high altitude in the Andes reveals an increase in total vessel density: EAPS-0567
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Gassmann, N., van Elteren, H., Goos, T., Morales, C., Rivera, M., Martin, D., Peralta, P., del Carpio, A. P., Huicho, L., Reiss, I., Gassmann, M., De Jonge, R., and Pediatrics
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SDG 3 - Good Health and Well-being - Abstract
Background and aims: The developing human fetus copes well with the physiological reduction in oxygen supply in utero. The fetus of a pregnant woman residing at high altitude successfully adapts to greater hypoxic exposure compared to a fetus growing at sea level. Methods: Fifty-three healthy term newborns in Puno, Peru (3840m above sea level) were studied within 24 hours after birth. Pre- and post-ductal arterial oxygen saturation (SpO2) were determined. Cerebral tissue and calf mus- cle regional SO2 (rSO2) using near infrared spectroscopy (NIRS) were measured. Skin microcirculation using incident dark field (IDF) imaging (CytoCam®) were measured in this group and in a Dutch control group of 33 healthy term infants born at sea level. Results: Pre- and post-ductal SpO2 in babies born at high altitude was 88.1% and 88.4%, being respectively 10.4% and 9.7% lower than newborns at sealevel (p
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- 2016
23. Preterm cerebral microcirculation assessed with colour doppler: A pilot study
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Raets, M., Govaert, P., Goos, T. G., Reiss, I. K. M., De Jonge, R. C. J., Dudink, J., Pediatrics, and Radiology & Nuclear Medicine
- Abstract
Background and aims Pilot study to explore feasibility of a colour Doppler technique for monitoring cerebral perfusion at the level of microvessels. Methods Between March 1st, 2011, and January 30th, 2013, all admitted infants born before 29 weeks of gestation were eligible for Doppler imaging. Perfusion images were acquired in a standard coronal plane. Image quality was assessed by two authors (MR, PG). The region of interest (ROI) was manually selected. A segmentation tool was developed to separate colour data from the greyscale 2D images, leading to a percentage and number of colour pixels in the image (Doppler colour index; DCI). Intra- and interobserver agreement was analysed. Results Intra- and interobserver agreement for placement of ROIs was good (bias -0.24 resp. -0.74 percentage points). Colour Doppler was able to depict microvessels in cortex, white matter and deep grey matter. The median DCI in a region of cortex-white matter was 7.8% with a wide range (1.4%-25.6%). There was no significant difference between the left and right hemisphere (Mann-Whitney U, P-value 0.61). Clinically relevant observations were tabulated, e.g. distant effect of GMH on regional perfusion. Conclusion Sonographic small vessel visualisation may help understand pathogenetic mechanisms related to perfusion and is valuable to monitor effects of treatment.
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- 2014
24. Rapid determination of particle size distribution of microbead catalysts
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Mirskii, Ya. V., Nesmeyanova, T. S., Goos, T. V., Kaviev, V. M., Klimov, A. V., and Kazakov, G. I.
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- 1985
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25. 1552 Improving Control of the Oxygen Saturation During Resuscitation of Preterm Infants with the use of Trend Monitoring
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Goos, T., primary, Rook, D., additional, Eijk, A. v. d., additional, Kroon, A., additional, Dankelman, J., additional, and Reiss, I., additional
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- 2012
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26. Cylindrical "allipse"
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van Amstel, Willem D., additional, Groenewold, R., additional, Goos, T., additional, van Leenders, J., additional, and Oomen, J., additional
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- 1999
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27. Sketches of American mayors. III. James M. Curley of Boston.
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Goos, T. G.
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- 1926
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28. Preparation of ultrastable Faujasites and investigation of their catalytic properties in cracking petroleum feedstock
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Goos, T
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- 1978
29. Respiratory rate monitoring in ICU patients and healthy volunteers using electrical impedance tomography: a validation study.
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Wisse JJ, Flinsenberg MJW, Jonkman AH, Goos TG, and Gommers D
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- Humans, Male, Female, Monitoring, Physiologic methods, Adult, Middle Aged, Respiration, Artificial, Aged, Capnography, Electric Impedance, Tomography methods, Intensive Care Units, Healthy Volunteers, Respiratory Rate physiology
- Abstract
Objective . The respiratory rate (RR) is considered one of the most informative vital signals. A well-validated standard for RR measurement in mechanically ventilated patient is capnography; a noninvasive technique for expiratory CO
2 measurements. Reliable RR measurements in spontaneously breathing patients remains a challenge as continuous mainstream capnography measurements are not available. This study aimed to assess the accuracy of RR measurement using electrical impedance tomography (EIT) in healthy volunteers and intensive care unit (ICU) patients on mechanical ventilation and spontaneously breathing post-extubation. Comparator methods included RR derived from both capnography and bioimpedance electrocardiogram (ECG) measurements. Approach . Twenty healthy volunteers wore an EIT belt and ECG electrodes while breathing through a capnometer within a 10-40 breaths per minute (BPM) range. Nineteen ICU patients underwent similar measurements during pressure support ventilation and spontaneously breathing after extubation from mechanical ventilation. Stable periods with regular breathing and no artefacts were selected, and agreement between measurement methods was assessed using Bland-Altman analysis for repeated measurements. Main result . Bland-Altman analysis revealed a bias less than 0.2 BPM, with tight limits of agreement (LOA) ±1.5 BPM in healthy volunteers and ventilated ICU patients when comparing EIT to capnography. Spontaneously breathing ICU patients had wider LOA (±2.5 BPM) when comparing EIT to ECG bioimpedance, but gold standard comparison was unavailable. RR measurements were stable for 91% of the time for capnography, 68% for EIT, and 64% of the ECG bioimpedance signals. After extubation, the percentage of stable periods decreased to 48% for EIT signals and to 55% for ECG bioimpedance. Significance . In periods of stable breathing, EIT demonstrated excellent RR measurement accuracy in healthy volunteers and ICU patients. However, stability of both EIT and ECG bioimpedance RR measurements declined in spontaneously breathing patients to approximately 50% of the time., (© 2024 Institute of Physics and Engineering in Medicine.)- Published
- 2024
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30. Mortality surrogates in combined pulmonary fibrosis and emphysema.
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Zhao A, Gudmundsson E, Mogulkoc N, van Moorsel C, Corte TJ, Vasudev P, Romei C, Chapman R, Wallis TJM, Denneny E, Goos T, Savas R, Ahmed A, Brereton CJ, van Es HW, Jo H, De Liperi A, Duncan M, Pontoppidan K, De Sadeleer LJ, van Beek F, Barnett J, Cross G, Procter A, Veltkamp M, Hopkins P, Moodley Y, Taliani A, Taylor M, Verleden S, Tavanti L, Vermant M, Nair A, Stewart I, Janes SM, Young AL, Barber D, Alexander DC, Porter JC, Wells AU, Jones MG, Wuyts WA, and Jacob J
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- Humans, Lung, Fibrosis, Disease Progression, Retrospective Studies, Pulmonary Emphysema complications, Idiopathic Pulmonary Fibrosis, Emphysema complications
- Abstract
Background: Idiopathic pulmonary fibrosis (IPF) with coexistent emphysema, termed combined pulmonary fibrosis and emphysema (CPFE) may associate with reduced forced vital capacity (FVC) declines compared to non-CPFE IPF patients. We examined associations between mortality and functional measures of disease progression in two IPF cohorts., Methods: Visual emphysema presence (>0% emphysema) scored on computed tomography identified CPFE patients (CPFE/non-CPFE: derivation cohort n=317/n=183, replication cohort n=358/n=152), who were subgrouped using 10% or 15% visual emphysema thresholds, and an unsupervised machine-learning model considering emphysema and interstitial lung disease extents. Baseline characteristics, 1-year relative FVC and diffusing capacity of the lung for carbon monoxide ( D
LCO ) decline (linear mixed-effects models), and their associations with mortality (multivariable Cox regression models) were compared across non-CPFE and CPFE subgroups., Results: In both IPF cohorts, CPFE patients with ≥10% emphysema had a greater smoking history and lower baseline DLCO compared to CPFE patients with <10% emphysema. Using multivariable Cox regression analyses in patients with ≥10% emphysema, 1-year DLCO decline showed stronger mortality associations than 1-year FVC decline. Results were maintained in patients suitable for therapeutic IPF trials and in subjects subgrouped by ≥15% emphysema and using unsupervised machine learning. Importantly, the unsupervised machine-learning approach identified CPFE patients in whom FVC decline did not associate strongly with mortality. In non-CPFE IPF patients, 1-year FVC declines ≥5% and ≥10% showed strong mortality associations., Conclusion: When assessing disease progression in IPF, DLCO decline should be considered in patients with ≥10% emphysema and a ≥5% 1-year relative FVC decline threshold considered in non-CPFE IPF patients., Competing Interests: Conflict of interest: J. Jacob reports fees from Boehringer Ingelheim, Roche, NHSX, Takeda and GlaxoSmithKline, unrelated to the submitted work, and was supported by Wellcome Trust Clinical Research Career Development Fellowship 209553/Z/17/Z and the NIHR Biomedical Research Centre at University College London. N. Mogulkoc reports grant TUBITAK (EJP Rare Disease project “COCOS-IPF”), fees from Boehringer Ingelheim, Roche, and Nobel Turkey unrelated to the submitted work, and received support for travel to meetings from Roche and Actelion. T.J. Corte reports unrestricted educational grants from Boehringer Ingelheim, Roche, Biogen and Galapagos, fees from Roche, BMS, Boehringer Ingelheim, Vicore and DevPro, assistance for travel to meetings from Boehringer Ingelheim, and participation on a data safety monitoring board or advisory board for Roche, BMS, Boehringer Ingelheim, Vicore, Ad Alta, Bridge Biotherapeutics and DevPro. P. Vasudev reports financial interests from Blackford Analysis. T. Goos is supported by Research Foundation Flanders (1S73921N). L.J. De Sadeleer is supported by Marie Sklodowska-Curie actions postdoctoral fellowship within the European Union's Horizon Europe research and innovation programme. H. Jo reports fees from Boehringer Ingelheim and Roche, and received assistance for travel to meetings from Boehringer Ingelheim and Roche. S. Verleden reports consultancy fees from Boehringer Ingelheim and Sanofi. M. Vermant is supported by an FWO (Research Flanders Foundation) fellowship. S.M. Janes reports fees from AstraZeneca, Bard1 Bioscience, Achilles Therapeutics and Jansen unrelated to the submitted work, received assistance for travel to meetings from AstraZeneca and Takeda, and is the investigator lead on grants from GRAIL Inc., GlaxoSmithKline plc and Owlstone. A.U. Wells reports personal fees and non-financial support from Boehringer Ingelheim, Bayer and Roche Pharmaceuticals, and personal fees from Blade, outside of the submitted work. The remaining authors report no relevant conflicts of interest., (Copyright ©The authors 2024. For reproduction rights and permissions contact permissions@ersnet.org.)- Published
- 2024
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31. Ventilatory capacity in CLAD is driven by dysfunctional airway structure.
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Kerckhof P, Ambrocio GPL, Beeckmans H, Kaes J, Geudens V, Bos S, Willems L, Vermaut A, Vermant M, Goos T, De Fays C, Aversa L, Mohamady Y, Vanstapel A, Orlitová M, Van Slambrouck J, Jin X, Varghese V, Josipovic I, Boone MN, Dupont LJ, Weynand B, Dubbeldam A, Van Raemdonck DE, Ceulemans LJ, Gayan-Ramirez G, De Sadeleer LJ, McDonough JE, Vanaudenaerde BM, and Vos R
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- Humans, Male, Female, Lung diagnostic imaging, Lung pathology, Phenotype, Retrospective Studies, Bronchiolitis Obliterans diagnostic imaging, Bronchiolitis Obliterans etiology, Lung Transplantation adverse effects, Airway Obstruction
- Abstract
Background: Chronic lung allograft dysfunction (CLAD) encompasses three main phenotypes: bronchiolitis obliterans syndrome (BOS), restrictive allograft syndrome (RAS) and a Mixed phenotype combining both pathologies. How the airway structure in its entirety is affected in these phenotypes is still poorly understood., Methods: A detailed analysis of airway morphometry was applied to gain insights on the effects of airway remodelling on the distribution of alveolar ventilation in end-stage CLAD. Ex vivo whole lung μCT and tissue-core μCT scanning of six control, six BOS, three RAS and three Mixed explant lung grafts (9 male, 9 female, 2014-2021, Leuven, Belgium) were used for digital airway reconstruction and calculation of airway dimensions in relation to luminal obstructions., Findings: BOS and Mixed explants demonstrated airway obstructions of proximal bronchioles (starting at generation five), while RAS explants particularly had airway obstructions in the most distal bronchioles (generation >12). In BOS and Mixed explants 76% and 84% of bronchioles were obstructed, respectively, while this was 22% in RAS. Bronchiolar obstructions were mainly caused by lymphocytic inflammation of the airway wall or fibrotic remodelling, i.e. constrictive bronchiolitis. Proximal bronchiolectasis and imbalance in distal lung ventilation were present in all CLAD phenotypes and explain poor lung function and deterioration of specific lung function parameters., Interpretation: Alterations in the structure of conducting bronchioles revealed CLAD to affect alveolar ventilatory distribution in a regional fashion. The significance of various obstructions, particularly those associated with mucus, is highlighted., Funding: This research was funded with the National research fund Flanders (G060322N), received by R.V., Competing Interests: Declaration of interests JK and VG and MV are junior research fellows of the Research Foundation Flanders (FWO; 1198920N and 1102020N and 1SE433N). MV received compensation from Sanofi for attending the ERS 2023 congress. GPLA is a supported by an European Respirology Society Clinical Fellowship Grant. SB is supported by the Paul Corris International Clinical Research Training Scholarship. LJDS (De Sadeleer) is supported by the European Union's Horizon Europe research and innovation programme as a Marie Sklodowska-Curie actions postdoctoral fellowship (grant agreement No. 101066289)., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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32. Intrafamilial Correlation and Variability in the Clinical Evolution of Pulmonary Fibrosis.
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Goos T, Dubbeldam A, Vermant M, Gogaert S, De Sadeleer LJ, De Crem N, De Langhe E, Yserbyt J, Weynand B, Carlon MS, Verschakelen J, Vermeer S, Verleden SE, and Wuyts WA
- Abstract
Competing Interests: Financial/Nonfinancial Disclosures The authors have reported to CHEST the following: W. A. W. received scientific grants from Roche, Boehringer Ingelheim, Galapagos, and Alentis. S. E. V. received consulting fees from Sanofi, Boehringer Ingelheim, and Therakos. E. D. L. received fees from Amgen, Argenx, GSK, Actelion, Lilly, Pfizer, Boehringer Ingelheim, MSD, AC Immune, Amgen, Astra Zeneca, Novartis, and Otsuka and is copresident of the Working Group Rare Diseases, Belgian Royal Society of Rheumatology. None declared (T. G., A. D., M. V., S. G., L. J. D. S., N. D. C., J. Y., B. W., M. S. C., J. V., S. V.).
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- 2023
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33. Mucosal immune alterations at the early onset of tissue destruction in chronic obstructive pulmonary disease.
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de Fays C, Geudens V, Gyselinck I, Kerckhof P, Vermaut A, Goos T, Vermant M, Beeckmans H, Kaes J, Van Slambrouck J, Mohamady Y, Willems L, Aversa L, Cortesi EE, Hooft C, Aerts G, Aelbrecht C, Everaerts S, McDonough JE, De Sadeleer LJ, Gohy S, Ambroise J, Janssens W, Ceulemans LJ, Van Raemdonck D, Vos R, Hackett TL, Hogg JC, Kaminski N, Gayan-Ramirez G, Pilette C, and Vanaudenaerde BM
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- Humans, Inflammation, Defensins, Immunoglobulin A, Pulmonary Disease, Chronic Obstructive, Pulmonary Emphysema, Emphysema
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Rationale: COPD is characterized by chronic airway inflammation, small airways changes, with disappearance and obstruction, and also distal/alveolar destruction (emphysema). The chronology by which these three features evolve with altered mucosal immunity remains elusive. This study assessed the mucosal immune defense in human control and end-stage COPD lungs, by detailed microCT and RNA transcriptomic analysis of diversely affected zones., Methods: In 11 control (non-used donors) and 11 COPD (end-stage) explant frozen lungs, 4 cylinders/cores were processed per lung for microCT and tissue transcriptomics. MicroCT was used to quantify tissue percentage and alveolar surface density to classify the COPD cores in mild, moderate and severe alveolar destruction groups, as well as to quantify terminal bronchioles in each group. Transcriptomics of each core assessed fold changes in innate and adaptive cells and pathway enrichment score between control and COPD cores. Immunostainings of immune cells were performed for validation., Results: In mildly affected zones, decreased defensins and increased mucus production were observed, along CD8+ T cell accumulation and activation of the IgA pathway. In more severely affected zones, CD68+ myeloid antigen-presenting cells, CD4+ T cells and B cells, as well as MHCII and IgA pathway genes were upregulated. In contrast, terminal bronchioles were decreased in all COPD cores., Conclusion: Spatial investigation of end-stage COPD lungs show that mucosal defense dysregulation with decreased defensins and increased mucus and IgA responses, start concomitantly with CD8+ T-cell accumulation in mild emphysema zones, where terminal bronchioles are already decreased. In contrast, adaptive Th and B cell activation is observed in areas with more advanced tissue destruction. This study suggests that in COPD innate immune alterations occur early in the tissue destruction process, which affects both the alveoli and the terminal bronchioles, before the onset of an adaptive immune response., Competing Interests: IG reports travel support from AstraZeneca, not related to the content of this work. MV reports travel support from Sanofi, not related to the content of this manuscript. SE reports consulting fees from GSK, lecture honoraria from GSK, Boehringer Ingelheim, Chiesi and AstraZeneca, travel support from GSK and Sanofi, not related to the content of this manuscript. WJ reports grants and lecture honoraria from AstraZeneca and Chiesi, consulting fees from AstraZeneca, Griffols, GSK and Chiesi and travel support from Chiesi and AstraZeneca; has a leadership or fiduciary role in Board of VRGT and Board of ArtiQ, and is a co-founder and shareholder of ArtiQ NV. NK served as consultant for Biogen Idec, Boehringer Ingelheim, Third Rock, Pliant, Samumed, NuMedii, Theravance, LifeMax, Three Lake Partners, Astra Zeneca, RohBar, Veracyte, Augmanity, CSL Behring, Thyron, BMS, Biotech, Gilead, Galapagos, Chiesi, Arrowhead, Sofinnova and GSK, reports equity in Pliant and Thyron, and has a patent in new therapies for IPF, new therapies for ARDS and new biomarkers for IPF, licensed to Biotech. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 de Fays, Geudens, Gyselinck, Kerckhof, Vermaut, Goos, Vermant, Beeckmans, Kaes, Van Slambrouck, Mohamady, Willems, Aversa, Cortesi, Hooft, Aerts, Aelbrecht, Everaerts, McDonough, De Sadeleer, Gohy, Ambroise, Janssens, Ceulemans, Van Raemdonck, Vos, Hackett, Hogg, Kaminski, Gayan-Ramirez, Pilette and Vanaudenaerde.)
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- 2023
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34. Ultrasonographic Presentation and Anatomic Distribution of Lung Involvement in Patients with Rheumatoid Arthritis.
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Vermant M, Kalkanis A, Goos T, Cypers H, De Crem N, Neerinckx B, Taelman V, Verschueren P, and Wuyts WA
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Background: Rheumatoid arthritis (RA) is a chronic auto-immune disease, typically affecting the joints, which can also present with lung involvement (pleuritis, interstitial lung disease, pulmonary nodules, etc.). Lung ultrasound (LUS) is an upcoming tool in the detection of these pulmonary manifestations., Methods: We performed a 72-window LUS in 75 patients presenting to the outpatient rheumatology clinic and describe the abnormalities (presence of B-lines (vertical comet-tail artefacts), pleural abnormalities, pleural effusions, and subpleural nodules) on lung ultrasound. We created a topological mapping of the number of B-lines per intercostal zone., Results: We observed pleural effusions, pleural abnormalities, and pleural nodules in, respectively, 1.3%, 45.3%, and 14% of patients. There were 35 (46.7%) patients who had less than 5 B-lines, 15 (20%) patients who had between 5 and 10 B-lines, 11 (14.6%) between 10 and 20, 10 (13.3%) between 20 and 50, 1 (1.3%) between 50 and 100, and 3 (4%) of patients who had more than 100 B-lines., Conclusions: LUS in patients with RA shows an array of abnormalities ranging from interstitial syndromes to pleural abnormalities, subpleural nodules, and pleural effusions. Hotspots for the presence of B-lines are situated bilaterally in the posterior subscapular regions, as well as the anterior right mid-clavicular region.
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- 2023
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35. COVID-19 progression in hospitalized patients using follow-up in vivo CT and ex vivo microCT.
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Geudens V, Van Slambrouck J, Aerts G, Willems L, Goos T, Kaes J, Zajacova A, Gyselinck I, Aelbrecht C, Vermaut A, Beeckmans H, Vermant M, De Fays C, Sacreas A, Aversa L, Orlitova M, Vanstapel A, Josipovic I, Boone MN, McDonough JE, Weynand B, Pilette C, Janssens W, Dupont L, Wuyts WA, Verleden GM, Van Raemdonck DE, Vos R, Gayan-Ramirez G, Ceulemans LJ, and Vanaudenaerde BM
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Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes coronavirus disease-19 (COVID-19) which can lead to acute respiratory distress syndrome (ARDS) and evolve to pulmonary fibrosis. Computed tomography (CT) is used to study disease progression and describe radiological patterns in COVID-19 patients. This study aimed to assess disease progression regarding lung volume and density over time on follow-up in vivo chest CT and give a unique look at parenchymal and morphological airway changes in "end-stage" COVID-19 lungs using ex vivo microCT., Methods: Volumes and densities of the lung/lobes of three COVID-19 patients were assessed using follow-up in vivo CT and ex vivo whole lung microCT scans. Airways were quantified by airway segmentations on whole lung microCT and small-partition microCT. As controls, three discarded healthy donor lungs were used. Histology was performed in differently affected regions in the COVID-19 lungs., Results: In vivo , COVID-19 lung volumes decreased while density increased over time, mainly in lower lobes as previously shown. Ex vivo COVID-19 lung volumes decreased by 60% and all lobes were smaller compared to controls. Airways were more visible on ex vivo microCT in COVID-19, probably due to fibrosis and increased airway diameter. In addition, small-partition microCT showed more deformation of (small) airway morphology and fibrotic organization in severely affected regions with heterogeneous distributions within the same lung which was confirmed by histology., Conclusions: COVID-19-ARDS and subsequent pulmonary fibrosis alters lung architecture and airway morphology which is described using in vivo CT, ex vivo microCT, and histology., Competing Interests: Conflicts of Interest: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at https://jtd.amegroups.com/article/view/10.21037/jtd-22-1488/coif). BMV, GGR, WAW, and WJ report funding from KU Leuven (No. C16/19/005). WAW reports funding from Roche, Boehringer Ingelheim, and Galapagos. GMV and DEVR report funding from the Broere Charitable Foundation. LJC reports funding from Medtronic. RV reports funding from UZ Leuven (No. STG15/023). RV, VG, JK, A Vanstapel, TG, MV, and IG report funding from the Research Foundation-Flanders (FWO) (No. 12G8715N to RV, No. 11L9822N to VG, No. 1198920N to JK, No. 1102020N to A Vanstapel, No. 1S73921N to TG, No. 1SE4322N to MV, and No. 11N3922N to IG). MNB reports funding from the Ghent University Special Research Fund for the UGCT Centre of Expertise BOF.EXP.2017.0007. The other authors have no conflicts of interest to declare., (2023 Journal of Thoracic Disease. All rights reserved.)
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- 2023
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36. Radiologic and Histologic Correlates of Early Interstitial Lung Changes in Explanted Lungs.
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Verleden SE, Vanstapel A, Jacob J, Goos T, Hendriks J, Ceulemans LJ, Van Raemdonck DE, De Sadeleer L, Vos R, Kwakkel-van Erp JM, Neyrinck AP, Verleden GM, Boone MN, Janssens W, Wauters E, Weynand B, Jonigk DD, Verschakelen J, and Wuyts WA
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- Male, Humans, Middle Aged, Aged, Aged, 80 and over, Lung diagnostic imaging, Lung pathology, Fibrosis, X-Ray Microtomography, Lung Diseases, Interstitial diagnostic imaging, Bronchiectasis
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Background Interstitial lung abnormalities (ILAs) reflect imaging features on lung CT scans that are compatible with (early) interstitial lung disease. Despite accumulating evidence regarding the incidence, risk factors, and prognosis of ILAs, the histopathologic correlates of ILAs remain elusive. Purpose To determine the correlation between radiologic and histopathologic findings in CT-defined ILAs in human lung explants. Materials and Methods Explanted lungs or lobes from participants with radiologically documented ILAs were prospectively collected from 2010 to 2021. These specimens were air-inflated, frozen, and scanned with CT and micro-CT (spatial resolution of 0.7 mm and 90 μm, respectively). Subsequently, the lungs were cut and sampled with core biopsies. At least five samples per lung underwent micro-CT and subsequent histopathologic assessment with semiquantitative remodeling scorings. Based on area-specific radiologic scoring, the association between radiologic and histopathologic findings was assessed. Results Eight lung explants from six donors (median age at explantation, 71 years [range, 60-83 years]; four men) were included (unused donor lungs, n = 4; pre-emptive lobectomy for oncologic indications, n = 2). Ex vivo CT demonstrated ground-glass opacification, reticulation, and bronchiectasis. Micro-CT and histopathologic examination demonstrated that lung abnormalities were frequently paraseptal and associated with fibrosis and lymphocytic inflammation. The histopathologic results showed varying degrees of fibrosis in areas that appeared normal on CT scans. Regions of reticulation on CT scans generally had greater fibrosis at histopathologic analysis. Vasculopathy and bronchiectasis were also often present at histopathologic examination of lungs with ILAs. Fully developed fibroblastic foci were rarely observed. Conclusion This study demonstrated direct histologic correlates of CT-defined interstitial lung abnormalities. © RSNA, 2022 Supplemental material is available for this article. See also the editorial by Jeudy in this issue.
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- 2023
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37. Delineating associations of progressive pleuroparenchymal fibroelastosis in patients with pulmonary fibrosis.
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Gudmundsson E, Zhao A, Mogulkoc N, van Beek F, Goos T, Brereton CJ, Veltkamp M, Chapman R, van Es HW, Garthwaite H, Gholipour B, Heightman M, Nair A, Pontoppidan K, Savas R, Ahmed A, Vermant M, Unat O, Procter A, De Sadeleer L, Denneny E, Wallis T, Duncan M, Taylor M, Verleden S, Janes SM, Alexander DC, Wells AU, Porter J, Jones MG, Stewart I, van Moorsel CHM, Wuyts W, and Jacob J
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Background: Computer quantification of baseline computed tomography (CT) radiological pleuroparenchymal fibroelastosis (PPFE) associates with mortality in idiopathic pulmonary fibrosis (IPF). We examined mortality associations of longitudinal change in computer-quantified PPFE-like lesions in IPF and fibrotic hypersensitivity pneumonitis (FHP)., Methods: Two CT scans 6-36 months apart were retrospectively examined in one IPF (n=414) and one FHP population (n=98). Annualised change in computerised upper-zone pleural surface area comprising radiological PPFE-like lesions (Δ-PPFE) was calculated. Δ-PPFE >1.25% defined progressive PPFE above scan noise. Mixed-effects models evaluated Δ-PPFE against change in visual CT interstitial lung disease (ILD) extent and annualised forced vital capacity (FVC) decline. Multivariable models were adjusted for age, sex, smoking history, baseline emphysema presence, antifibrotic use and diffusion capacity of the lung for carbon monoxide. Mortality analyses further adjusted for baseline presence of clinically important PPFE-like lesions and ILD change., Results: Δ-PPFE associated weakly with ILD and FVC change. 22-26% of IPF and FHP cohorts demonstrated progressive PPFE-like lesions which independently associated with mortality in the IPF cohort (hazard ratio 1.25, 95% CI 1.16-1.34, p<0.0001) and the FHP cohort (hazard ratio 1.16, 95% CI 1.00-1.35, p=0.045)., Interpretation: Progression of PPFE-like lesions independently associates with mortality in IPF and FHP but does not associate strongly with measures of fibrosis progression., Competing Interests: Conflict of interest: J. Jacob reports fees from Boehringer Ingelheim, Roche, NHSX, Takeda and GlaxoSmithKline unrelated to the submitted work. J. Jacob was supported by Wellcome Trust Clinical Research Career Development Fellowship 209553/Z/17/Z and the NIHR Biomedical Research Centre at University College London. S.M. Janes reports fees from AstraZeneca, Bard1 Bioscience, Achilles Therapeutics and Janssen unrelated to the submitted work. S.M. Janes received assistance for travel to meetings from AstraZeneca to American Thoracic Conference 2018 and from Takeda to World Conference Lung Cancer 2019, and is the Investigator Lead on grants from GRAIL Inc, GlaxoSmithKline plc and Owlstone. A.U. Wells reports personal fees and nonfinancial support from Boehringer Ingelheim, Bayer and Roche Pharmaceuticals; and personal fees from Blade, outside of the submitted work. The remaining authors have nothing to disclose., (Copyright ©The authors 2023.)
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- 2023
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38. Are genes the missing link to detect and prognosticate RA-ILD?
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Vermant M, Goos T, Gogaert S, De Cock D, Verschueren P, and Wuyts WA
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- 2023
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39. BAL Transcriptomes Characterize Idiopathic Pulmonary Fibrosis Endotypes With Prognostic Impact.
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De Sadeleer LJ, Verleden SE, Schupp JC, McDonough JE, Goos T, Yserbyt J, Bargagli E, Rottoli P, Kaminski N, Prasse A, and Wuyts WA
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- Humans, Lung metabolism, Prognosis, Transcription Factors metabolism, Transcriptome, Idiopathic Pulmonary Fibrosis
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Background: Given the plethora of pathophysiologic mechanisms described in idiopathic pulmonary fibrosis (IPF), we hypothesize that the mechanisms driving fibrosis in IPF may be different from one patient to another., Research Question: Do IPF endotypes exist and are they associated with outcome?, Study Design and Methods: Using a publicly available gene expression dataset retrieved from BAL samples of patients with IPF and control participants (GSE70867), we clustered IPF samples based on a dimension reduction algorithm specifically designed for -omics data, called DDR Tree. After clustering, gene set enrichment analysis was performed for functional annotation, associations with clinical variables and prognosis were investigated, and differences in transcriptional regulation were determined using motif enrichment analysis. The findings were validated in three independent publicly available gene expression datasets retrieved from IPF blood samples., Results: One hundred seventy-six IPF samples from three centers were clustered in six IPF clusters, with distinct functional enrichment. Although clinical characteristics did not differ between the clusters, one cluster conferred worse sex-age-physiology score-corrected survival, whereas another showed a numeric trend toward worse survival (P = .08). The first was enriched for increased epithelial and innate and adaptive immunity signatures, whereas the other showed important telomere and mitochondrial dysfunction, loss of proteostasis, and increased myofibroblast signatures. The existence of these two endotypes, including the impact on survival of the immune endotype, was validated in three independent validation cohorts. Finally, we identified transcription factors regulating the expression of endotype-specific survival-associated genes., Interpretation: Gene expression-based endotyping in IPF is feasible and can inform clinical evolution. As endotype-specific pathways and survival-associated transcription factors are identified, endotyping may open up the possibility of endotype-tailored therapy., (Copyright © 2022 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.)
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- 2022
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40. The MUC5B Promoter Polymorphism is Not Associated With Non-ILD Chronic Respiratory Diseases or Post-transplant Outcome.
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Goos T, Verleden SE, De Sadeleer LJ, Van Herck A, Sacreas A, Vanstapel A, Kaes J, Geudens V, Aelbrecht C, Ruttens D, Lambrechts D, Vermeer S, Ceulemans LJ, Van Raemdonck DE, Godinas L, Yserbyt J, Vanaudenaerde BM, Verleden GM, Vos R, and Wuyts WA
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- Genetic Predisposition to Disease, Humans, Mucin-5B genetics, Polymorphism, Genetic, Promoter Regions, Genetic, Idiopathic Pulmonary Fibrosis genetics, Idiopathic Pulmonary Fibrosis surgery, Lung Diseases, Interstitial genetics, Lung Diseases, Interstitial surgery
- Abstract
The MUC5B promoter polymorphism (rs35705950) has been associated with interstitial lung disease (ILD) and with prolonged pre-transplant survival in idiopathic pulmonary fibrosis (IPF), but no information is available regarding its prevalence in other respiratory diseases and its influence on post-transplant outcome. We included the Leuven lung transplantation cohort between 1991 and 2015 ( n = 801). We assessed the minor allele frequency (MAF) of the MUC5B variant in the entire study cohort and investigated the influence of recipient MUC5B promoter polymorphism on post-transplant outcome in patients who were transplanted after 2004. MUC5B was successfully genotyped in 746 patients. The MAF was significantly higher in ILD (17.6%) compared to chronic obstructive pulmonary disease (COPD)/emphysema (9.3%), cystic fibrosis (CF)/bronchiectasis (BRECT) (7.5%) and pulmonary hypertension (PHT) (7.4%) ( p < 0.001). No association was observed between rs35705950 and chronic lung allograft dysfunction (CLAD)/graft loss in the ILD population [CLAD: HR 1.37 95% CI (0.70-2.68); graft loss: HR 1.02 95% CI (0.55-1.89)], nor the entire study cohort [CLAD: HR 0.96 95% CI (0.69-1.34); graft loss: HR 0.97 95% CI (0.70-1.35)]. The MUC5B promoter polymorphism is a very specific predictive factor for the presence of pulmonary fibrosis as it is only associated with pulmonary fibrosis and not with other chronic respiratory diseases. While the MUC5B promoter variant is associated with better pre-transplant survival among IPF patients, recipient MUC5B promoter variant does not play a role in post-transplant outcome., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Goos, Verleden, De Sadeleer, Van Herck, Sacreas, Vanstapel, Kaes, Geudens, Aelbrecht, Ruttens, Lambrechts, Vermeer, Ceulemans, Van Raemdonck, Godinas, Yserbyt, Vanaudenaerde, Verleden, Vos and Wuyts.)
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- 2022
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41. Lung Microenvironments and Disease Progression in Fibrotic Hypersensitivity Pneumonitis.
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De Sadeleer LJ, McDonough JE, Schupp JC, Yan X, Vanstapel A, Van Herck A, Everaerts S, Geudens V, Sacreas A, Goos T, Aelbrecht C, Nawrot TS, Martens DS, Schols D, Claes S, Verschakelen JA, Verbeken EK, Ackermann M, Decottignies A, Mahieu M, Hackett TL, Hogg JC, Vanaudenaerde BM, Verleden SE, Kaminski N, and Wuyts WA
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- Adult, Aged, Alveolitis, Extrinsic Allergic diagnosis, Case-Control Studies, Disease Progression, Female, Fibrosis, Gene Expression Profiling, Genetic Markers, Humans, Linear Models, Male, Middle Aged, Reproducibility of Results, Severity of Illness Index, Alveolitis, Extrinsic Allergic genetics, Alveolitis, Extrinsic Allergic pathology, Lung pathology, Transcriptome
- Abstract
Rationale: Fibrotic hypersensitivity pneumonitis (fHP) is an interstitial lung disease caused by sensitization to an inhaled allergen. Objectives: To identify the molecular determinants associated with progression of fibrosis. Methods: Nine fHP explant lungs and six unused donor lungs (as controls) were systematically sampled (4 samples/lung). According to microcomputed tomography measures, fHP cores were clustered into mild, moderate, and severe fibrosis groups. Gene expression profiles were assessed using weighted gene co-expression network analysis, xCell, gene ontology, and structure enrichment analysis. Gene expression of the prevailing molecular traits was also compared with idiopathic pulmonary fibrosis (IPF). The explant lung findings were evaluated in separate clinical fHP cohorts using tissue, BAL samples, and computed tomography scans. Measurements and Main Results: We found six molecular traits that associated with differential lung involvement. In fHP, extracellular matrix and antigen presentation/sensitization transcriptomic signatures characterized lung zones with only mild structural and histological changes, whereas signatures involved in honeycombing and B cells dominated the transcriptome in the most severely affected lung zones. With increasing disease severity, endothelial function was progressively lost, and progressive disruption in normal cellular homeostatic processes emerged. All six were also found in IPF, with largely similar associations with disease microenvironments. The molecular traits correlated with i n vivo disease behavior in a separate clinical fHP cohort. Conclusions: We identified six molecular traits that characterize the morphological progression of fHP and associate with in vivo clinical behavior. Comparing IPF with fHP, the transcriptome landscape was determined considerably by local disease extent rather than by diagnosis alone.
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- 2022
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42. Beyond Bronchiolitis Obliterans: In-Depth Histopathologic Characterization of Bronchiolitis Obliterans Syndrome after Lung Transplantation.
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Vanstapel A, Verleden SE, Verbeken EK, Braubach P, Goos T, De Sadeleer L, Kaes J, Vanaudenaerde BM, Jonigk D, Ackermann M, Ceulemans LJ, Van Raemdonck DE, Neyrinck AP, Vos R, Verleden GM, Weynand B, and On Behalf Of The Leuven Lung Transplant Group
- Abstract
Bronchiolitis obliterans syndrome (BOS) is considered an airway-centered disease, with bronchiolitis obliterans (BO) as pathologic hallmark. However, the histologic spectrum of pure clinical BOS remains poorly characterized. We provide the first in-depth histopathologic description of well-characterized BOS patients and patients without chronic lung allograft dysfunction (CLAD), defined according to the recent consensus guidelines. Explant lung tissue from 52 clinically-defined BOS and 26 non-CLAD patients (collected 1993-2018) was analyzed for histologic parameters, including but not limited to airway lesions, vasculopathy and fibrosis. In BOS, BO lesions were evident in 38 (73%) patients and varied from concentric sub-epithelial fibrotic BO to inflammatory BO, while 10/14 patients without BO displayed 'vanishing airways', defined by a discordance between arteries and airways. Chronic vascular abnormalities were detected in 22 (42%) patients. Ashcroft fibrosis scores revealed a median of 43% (IQR: 23-69) of normal lung parenchyma per patient; 26% (IQR: 18-37) of minimal alveolar fibrous thickening; and 11% (IQR: 4-18) of moderate alveolar thickening without architectural damage. Patchy areas of definite fibrotic damage to the lung structure (i.e., Ashcroft score ≥5) were present in 28 (54%) patients. Fibrosis was classified as bronchocentric ( n = 21/28, 75%), paraseptal ( n = 17/28, 61%) and subpleural ( n = 15/28, 54%). In non-CLAD patients, BO lesions were absent, chronic vascular abnormalities present in 1 (4%) patient and mean Ashcroft scores were significantly lower compared to BOS ( p = 0.0038) with 78% (IQR: 64-88) normally preserved lung parenchyma. BOS explant lungs revealed evidence of various histopathologic findings, including vasculopathy and fibrotic changes, which may contribute to the pathophysiology of BOS.
- Published
- 2021
- Full Text
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43. Defining and predicting progression in non-IPF interstitial lung disease.
- Author
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Goos T, De Sadeleer LJ, Yserbyt J, De Langhe E, Dubbeldam A, Verbeken EK, Verleden GM, Vermant M, Verschakelen J, Vos R, Weynand B, Verleden SE, and Wuyts WA
- Subjects
- Aged, Belgium epidemiology, Disease Progression, Female, Humans, Lung Diseases, Interstitial diagnostic imaging, Male, Predictive Value of Tests, Retrospective Studies, Risk Factors, Lung Diseases, Interstitial mortality, Lung Diseases, Interstitial physiopathology
- Abstract
Randomized placebo-controlled trials demonstrated the efficacy of antifibrotic treatment in non-IPF progressive fibrosing ILD (fILD). Currently, there is no consensus on how progression should be defined and clinical data of non-IPF fILD patients in a real-world setting are scarce. Non-IPF fILD patients presenting at the University Hospitals Leuven between 2012 and 2016 were included. Different definitions of progression according to the selection criteria of the INBUILD, RELIEF and the uILD study were retrospectively evaluated at every hospital visit. Univariate and multivariate analyses were performed to identify predictors of progression and mortality. The study cohort comprised 120 patients; 68.3%, 54.2% and 65.8% had progressive disease based on the INBUILD, RELIEF and uILD study, respectively. A large overlap of progressive fILD patients according to the different clinical trials was observed. Median transplant-free survival time of progressive fILD patients was 3.9, 3.9, 3.8 years and the median time-to-progression after diagnosis was 2.0, 3.1 and 2.3 years according to the INBUILD, RELIEF and uILD study, respectively. We identified several predictors of mortality, but only an underlying diagnosis of HP and uILD was independently associated with progression. Our data show a high prevalence of progressive fibrosis among non-IPF fILD patients and a discrepancy between predictors of mortality and progression. Mortality rate in fILD is high and the identification of progressive disease is only made late during the disease course. Moreover, future treatment decisions will be based upon disease behavior. Therefore, more predictors of progressive disease are needed to guide treatment decisions in the future., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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- View/download PDF
44. Distinct Airway Involvement in Subtypes of End-Stage Fibrotic Pulmonary Sarcoidosis.
- Author
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Verleden SE, Vanstapel A, De Sadeleer L, Dubbeldam A, Goos T, Gyselinck I, Geudens V, Kaes J, Van Raemdonck DE, Ceulemans LJ, Yserbyt J, Vos R, Vanaudenaerde B, Weynand B, Verschakelen J, and Wuyts WA
- Subjects
- Aged, Belgium, Bronchiectasis diagnostic imaging, Disease Progression, Female, Humans, Lung Diseases, Interstitial diagnostic imaging, Lung Transplantation, Male, Middle Aged, Pulmonary Fibrosis diagnostic imaging, Pulmonary Fibrosis surgery, Sarcoidosis, Pulmonary diagnostic imaging, Sarcoidosis, Pulmonary surgery, Tomography, X-Ray Computed, X-Ray Microtomography, Bronchiectasis pathology, Lung Diseases, Interstitial pathology, Pulmonary Fibrosis pathology, Sarcoidosis, Pulmonary pathology
- Abstract
Background: Sarcoidosis is a systemic granulomatous disease that in most patients affects the lung. Pulmonary fibrotic sarcoidosis is clinically, radiologically, and pathologically a heterogeneous condition. Although substantial indirect evidence suggests small airways involvement, direct evidence currently is lacking., Research Question: What is the role of the (small) airways in fibrotic sarcoidosis?, Study Design and Methods: Airway morphologic features were investigated in seven explant lungs with end-stage fibrotic sarcoidosis using a combination of CT scanning (large airways), micro-CT scanning (small airways), and histologic examination and compared with seven unused donor lungs as controls with specific attention focused on different radiologically defined sarcoidosis subtypes., Results: Patients with central bronchial distortion (n = 3), diffuse bronchiectasis (n = 3), and usual interstitial pneumonia pattern (n = 1) were identified based on CT scan, showing a decrease and narrowing of large airways, a similar airway number and increased airway diameter of more distal airways, or an increase in airway number and airway diameter, respectively, compared with control participants. The number of terminal bronchioles per milliliter and the total number of terminal bronchioles were decreased in all forms of fibrotic sarcoidosis. Interestingly, the number of terminal bronchioles was inversely correlated with the degree of fibrosis. Furthermore, we identified granulomatous remodeling as a cause of small airways loss using serial micro-CT scanning and histologic examination., Interpretation: The large airways are involved differentially in subtypes of sarcoidosis, but the terminal bronchioles universally are lost. This suggests that small airways loss forms an important aspect in the pathophysiologic features of fibrotic pulmonary sarcoidosis., (Copyright © 2021 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
45. Progression in the Management of Non-Idiopathic Pulmonary Fibrosis Interstitial Lung Diseases, Where Are We Now and Where We Would Like to Be.
- Author
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Goos T, De Sadeleer LJ, Yserbyt J, Verleden GM, Vermant M, Verleden SE, and Wuyts WA
- Abstract
A significant proportion of patients with interstitial lung disease (ILD) may develop a progressive fibrosing phenotype characterized by worsening of symptoms and pulmonary function, progressive fibrosis on chest computed tomography and increased mortality. The clinical course in these patients mimics the relentless progressiveness of idiopathic pulmonary fibrosis (IPF). Common pathophysiological mechanisms such as a shared genetic susceptibility and a common downstream pathway-self-sustaining fibroproliferation-support the concept of a progressive fibrosing phenotype, which is applicable to a broad range of non-IPF ILDs. While antifibrotic drugs became the standard of care in IPF, immunosuppressive agents are still the mainstay of treatment in non-IPF fibrosing ILD (F-ILD). However, recently, randomized placebo-controlled trials have demonstrated the efficacy and safety of antifibrotic treatment in systemic sclerosis-associated F-ILD and a broad range of F-ILDs with a progressive phenotype. This review summarizes the current pharmacological management and highlights the unmet needs in patients with non-IPF ILD.
- Published
- 2021
- Full Text
- View/download PDF
46. Towards the Essence of Progressiveness: Bringing Progressive Fibrosing Interstitial Lung Disease (PF-ILD) to the Next Stage.
- Author
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De Sadeleer LJ, Goos T, Yserbyt J, and Wuyts WA
- Abstract
Although only recently introduced in the ILD community, the concept of progressive fibrosing interstitial lung disease (PF-ILD) has rapidly acquired an important place in the management of non-idiopathic pulmonary fibrosis fibrosing ILD (nonIPF fILD) patients. It confirms a clinical gut feeling that an important subgroup of nonIPF fILD portends a dismal prognosis despite therapeutically addressing the alleged triggering event. Due to several recently published landmark papers showing a treatment benefit with currently available antifibrotic drugs in PF-ILD patients, endorsing a PF-ILD phenotype has vital therapeutic consequences. Importantly, defining progressiveness is based on former progression, which has proven to be a rather moderate predictor of future progression. As fibrosis extent >20% and the presence of honeycombing have superior predictive properties regarding future progression, we advocate immediate initiation of antifibrotic treatment in the presence of these risk factors. In this perspective, we describe the historical context wherein PF-ILD has emerged, determine the currently employed PF-ILD criteria and their inherent limitations and propose new directions to mature its definition. Finally, while ascertaining progression in a nonIPF fILD patient clearly demonstrates the need for (additional) therapy, in the future, therapeutic decisions should be taken after assessing which pathway is ultimately driving the progression. Although not readily available, pathophysiological insight and diagnostic means are emergent to go full steam ahead in this novel direction.
- Published
- 2020
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47. Noncontact Monitoring of Respiratory Rate in Newborn Infants Using Thermal Imaging.
- Author
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Pereira CB, Yu X, Goos T, Reiss I, Orlikowsky T, Heimann K, Venema B, Blazek V, Leonhardt S, and Teichmann D
- Subjects
- Adult, Algorithms, Female, Humans, Infant, Newborn, Male, Signal Processing, Computer-Assisted, Young Adult, Monitoring, Physiologic methods, Respiratory Rate physiology, Thermography methods
- Abstract
Monitoring of respiratory rate (RR) is very important for patient assessment. In fact, it is considered one of the relevant vital parameters in critical care medicine. Nowadays, standard monitoring relies on obtrusive and invasive techniques, which require adhesive electrodes or sensors to be attached to the patient's body. Unfortunately, these procedures cause stress, pain, and frequently damage the vulnerable skin of preterm infants. This paper presents a "black-box" algorithm for remote monitoring of RR in thermal videos. "Black-box" in this context means that the algorithm does not rely on tracking of specific anatomic landmarks. Instead, it automatically distinguishes regions of interest in the video containing the respiratory signal from those containing only noise. To examine its performance and robustness during physiological (phase A) and pathological scenarios (phase B), a study on 12 healthy volunteers was carried out. After a successful validation on adults, a clinical study on eight newborn infants was conducted. A good agreement between estimated RR and ground truth was achieved. In the study involving adult volunteers, a mean root-mean-square error (RMSE) of ( 0.31 ±0.09) breaths/min and ( 3.27 ±0.72) breaths/min was obtained for phase A and phase B, respectively. In the study involving infants, the mean RMSE hovered around ( 4.15 ±1.44) breaths/min. In brief, this paper demonstrates that infrared thermography might become a clinically relevant alternative for the currently available RR monitoring modalities in neonatal care.
- Published
- 2019
- Full Text
- View/download PDF
48. [Consequence of frequent moving among stalls on the economics of swine fattening].
- Author
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Bilkei G, Goos T, Takacs T, Biro O, and Bilkei H
- Subjects
- Aging, Animals, Communicable Diseases epidemiology, Communicable Diseases veterinary, Female, Stress, Psychological, Housing, Animal, Swine, Swine Diseases, Weight Gain
- Abstract
In an industrial pig productions unit the weaned piglets of 20 sows were assigned to two Groups. The Groups were treated as follows: Group one (99 piglets of 10 sows): the pigs were kept in the same pen of the unit from birth until slaughter and received no prophylactic medication. If illness occurred, only the individual pig was treated. Group two (102 piglets of 10 sows): according to standard operating procedures on this farm, the pigs assigned to Group two were moved during the growing-fattening period three times, having received after moving into Flat-Deck and into the growing-fattening house for one week prophylactic antibiotic treatment. If illness occurred, only the individual pig was treated. The following Parameter were evaluated: A: Mortality B: Food Conversion C: Medicine expenses D: Stress related diseases E: Infectious diseases F: Age at slaughter at 100 kg live weight G: Revenue differences between the Groups The Group one showed regarding all investigated Parameters, when compared to the Group two, markedly better results and 15.58 Deutsche Mark cheeper production cost per pig. These result shows, that moving pigs among houses markedly influences the economics in fattening units.
- Published
- 1997
49. [Contribution to therapy of the "prostate syndrome" in aged dogs].
- Author
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Bilkei G, Biro O, Takacs T, Kotai I, Szenci O, and Goos T
- Subjects
- Aging, Animals, Anti-Bacterial Agents therapeutic use, Dogs, Male, Orchiectomy, Prostate growth & development, Prostatic Diseases therapy, Prostatic Hyperplasia therapy, Prostatic Hyperplasia veterinary, Syndrome, Dog Diseases, Prostatic Diseases veterinary
- Abstract
The treatment of the "prostate syndrome" is a great challenge for the practicing veterinarian. In the present paper the therapeutic approach of this syndrome will be evaluated. 58 older dogs showing this syndrome were castrated and received thereafter oral antibiotic therapy. For further additional treatment the dogs were assigned to two groups. The groups were treated as follows: Group one: 41 dogs were treated with retard Gestagen and Flumethason infiltrated into the prostate gland tissue. Group two: 17 dogs were treated with a single subcutaneously applied Gestagen injection. The success of the therapy was judged by decrease the size of the prostate gland to normal size. The first evaluation took place after 2 weeks and the second one after a year following castration and treatment. At the time of the first judgement 95.1% of the dogs in the group one and 70.6% in the group two showed normal prostate gland size. At the time of the second examination, a year after the treatment still 82.8% of the dogs in the group one and only 52.8% in the group two showed normal prostate gland size. These results suggest that the infiltration of the enlarged prostate gland with retard acting Gestagen and Flumethason results in long lasting diminishing of size of the diseased gland.
- Published
- 1997
50. [Management of E. coli dependent factorial diseases in weaning piglets].
- Author
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Bölcskei A, Bilkei G, Biro O, Clavadetscher E, Goos T, Orban P, Waller C, and Stelzer P
- Subjects
- Animal Feed, Animals, Diarrhea prevention & control, Diarrhea veterinary, Edema, Energy Metabolism, Escherichia coli Infections prevention & control, Gastrointestinal Diseases prevention & control, Swine, Weaning, Weight Gain, Anti-Bacterial Agents therapeutic use, Escherichia coli Infections veterinary, Gastrointestinal Diseases veterinary, Swine Diseases
- Abstract
The most important postweaning factorial diseases are at least partly caused by E. coli. The term postweaning coli complex can be subcategorized into the following manifestations: postweaning diarrhoea, edema disease, postweaning wasting and hemorrhagic gastroenteritis. In the presented study the effect of prophylactic zootechnique alone and zoo- and biotechnique in combination was evaluated during the first weeks postweaning. The results showed that combined zoo- and biotechnique is superior to simple zootechnique regarding food conversion (1.41 kg versus 1.73 kg), average daily weight gain (390 g versus 325 g) and postweaning piglet mortality (3.1% versus 4.9%). It is the opinion of the authors that combined postweaning zoo- and biotechnique should be performed in such pig production units where ETEC and/or SLTEC are present.
- Published
- 1996
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