2,167 results on '"Gorin, Michael A"'
Search Results
2. Towards Uncovering the Role of Incomplete Penetrance in Maculopathies through Sequencing of 105 Disease-Associated Genes.
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Hitti-Malin, Rebekkah, Panneman, Daan, Corradi, Zelia, Boonen, Erica, Astuti, Galuh, Dhaenens, Claire-Marie, Stöhr, Heidi, Weber, Bernhard, Sharon, Dror, Banin, Eyal, Karali, Marianthi, Banfi, Sandro, Ben-Yosef, Tamar, Glavač, Damjan, Farrar, G, Ayuso, Carmen, Liskova, Petra, Dudakova, Lubica, Vajter, Marie, Ołdak, Monika, Szaflik, Jacek, Matynia, Anna, Gorin, Michael, Kämpjärvi, Kati, Bauwens, Miriam, De Baere, Elfride, Hoyng, Carel, Li, Catherina, Klaver, Caroline, Inglehearn, Chris, Fujinami, Kaoru, Rivolta, Carlo, Allikmets, Rando, Zernant, Jana, Lee, Winston, Podhajcer, Osvaldo, Fakin, Ana, Sajovic, Jana, AlTalbishi, Alaa, Valeina, Sandra, Taurina, Gita, Vincent, Andrea, Roberts, Lisa, Ramesar, Raj, Sartor, Giovanna, Luppi, Elena, Downes, Susan, van den Born, L, McLaren, Terri, De Roach, John, Lamey, Tina, Thompson, Jennifer, Chen, Fred, Tracewska, Anna, Kamakari, Smaragda, Sallum, Juliana, Bolz, Hanno, Kayserili, Hülya, Roosing, Susanne, and Cremers, Frans
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inherited ,macula ,maculopathies ,penetrance ,retinal ,sequencing ,Humans ,Mutation ,Penetrance ,Pedigree ,Macular Degeneration ,Retina ,Phenotype ,ATP-Binding Cassette Transporters ,Eye Proteins ,Cadherin Related Proteins ,Nerve Tissue Proteins - Abstract
Inherited macular dystrophies (iMDs) are a group of genetic disorders, which affect the central region of the retina. To investigate the genetic basis of iMDs, we used single-molecule Molecular Inversion Probes to sequence 105 maculopathy-associated genes in 1352 patients diagnosed with iMDs. Within this cohort, 39.8% of patients were considered genetically explained by 460 different variants in 49 distinct genes of which 73 were novel variants, with some affecting splicing. The top five most frequent causative genes were ABCA4 (37.2%), PRPH2 (6.7%), CDHR1 (6.1%), PROM1 (4.3%) and RP1L1 (3.1%). Interestingly, variants with incomplete penetrance were revealed in almost one-third of patients considered solved (28.1%), and therefore, a proportion of patients may not be explained solely by the variants reported. This includes eight previously reported variants with incomplete penetrance in addition to CDHR1:c.783G>A and CNGB3:c.1208G>A. Notably, segregation analysis was not routinely performed for variant phasing-a limitation, which may also impact the overall diagnostic yield. The relatively high proportion of probands without any putative causal variant (60.2%) highlights the need to explore variants with incomplete penetrance, the potential modifiers of disease and the genetic overlap between iMDs and age-related macular degeneration. Our results provide valuable insights into the genetic landscape of iMDs and warrant future exploration to determine the involvement of other maculopathy genes.
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- 2024
3. Immunomodulatory response to neoadjuvant nivolumab in non-metastatic clear cell renal cell carcinoma
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Singla, Nirmish, Nirschl, Thomas R., Obradovic, Aleksandar Z., Shenderov, Eugene, Lombardo, Kara, Liu, Xiaopu, Pons, Alice, Zarif, Jelani C., Rowe, Steven P., Trock, Bruce J., Hammers, Hans J., Bivalacqua, Trinity J., Pierorazio, Phillip M., Deutsch, Julie S., Lotan, Tamara L., Taube, Janis M., Ged, Yasser M. A., Gorin, Michael A., Allaf, Mohamad E., and Drake, Charles G.
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- 2024
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4. Validation of a Zero-Shot Learning Natural Language Processing Tool for Data Abstraction from Unstructured Healthcare Data
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Kaufmann, Basil, Busby, Dallin, Das, Chandan Krushna, Tillu, Neeraja, Menon, Mani, Tewari, Ashutosh K., and Gorin, Michael A.
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,68T50 ,I.2.7 - Abstract
Objectives: To describe the development and validation of a zero-shot learning natural language processing (NLP) tool for abstracting data from unstructured text contained within PDF documents, such as those found within electronic health records. Materials and Methods: A data abstraction tool based on the GPT-3.5 model from OpenAI was developed and compared to three physician human abstractors in terms of time to task completion and accuracy for abstracting data on 14 unique variables from a set of 199 de-identified radical prostatectomy pathology reports. The reports were processed by the software tool in vectorized and scanned formats to establish the impact of optical character recognition on data abstraction. The tool was assessed for superiority for data abstraction speed and non-inferiority for accuracy. Results: The human abstractors required a mean of 101s per report for data abstraction, with times varying from 15 to 284 s. In comparison, the software tool required a mean of 12.8 s to process the vectorized reports and a mean of 15.8 to process the scanned reports (P < 0.001). The overall accuracies of the three human abstractors were 94.7%, 97.8%, and 96.4% for the combined set of 2786 datapoints. The software tool had an overall accuracy of 94.2% for the vectorized reports, proving to be non-inferior to the human abstractors at a margin of -10% ($\alpha$=0.025). The tool had a slightly lower accuracy of 88.7% using the scanned reports, proving to be non-inferiority to 2 out of 3 human abstractors. Conclusion: The developed zero-shot learning NLP tool affords researchers comparable levels of accuracy to that of human abstractors, with significant time savings benefits. Because of the lack of need for task-specific model training, the developed tool is highly generalizable and can be used for a wide variety of data abstraction tasks, even outside the field of medicine., Comment: 10 pages, 3 figures, 1 table, 3 supplementary figures
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- 2023
5. Systematic assessment of the contribution of structural variants to inherited retinal diseases.
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Wen, Shu, Wang, Meng, Qian, Xinye, Li, Yumei, Wang, Keqing, Choi, Jongsu, Pennesi, Mark, Yang, Paul, Marra, Molly, Koenekoop, Robert, Lopez, Irma, Matynia, Anna, Sui, Ruifang, Yao, Fengxia, Goetz, Kerry, Porto, Fernanda, Chen, Rui, and Gorin, Michael
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Humans ,Retinal Diseases ,Mutation ,Whole Genome Sequencing ,Exome Sequencing ,Alleles ,Membrane Glycoproteins ,Molecular Chaperones ,Eye Proteins - Abstract
Despite increasing success in determining genetic diagnosis for patients with inherited retinal diseases (IRDs), mutations in about 30% of the IRD cases remain unclear or unsettled after targeted gene panel or whole exome sequencing. In this study, we aimed to investigate the contributions of structural variants (SVs) to settling the molecular diagnosis of IRD with whole-genome sequencing (WGS). A cohort of 755 IRD patients whose pathogenic mutations remain undefined were subjected to WGS. Four SV calling algorithms including include MANTA, DELLY, LUMPY and CNVnator were used to detect SVs throughout the genome. All SVs identified by any one of these four algorithms were included for further analysis. AnnotSV was used to annotate these SVs. SVs that overlap with known IRD-associated genes were examined with sequencing coverage, junction reads and discordant read pairs. Polymerase Chain Reaction (PCR) followed by Sanger sequencing was used to further confirm the SVs and identify the breakpoints. Segregation of the candidate pathogenic alleles with the disease was performed when possible. A total of 16 candidate pathogenic SVs were identified in 16 families, including deletions and inversions, representing 2.1% of patients with previously unsolved IRDs. Autosomal dominant, autosomal recessive and X-linked inheritance of disease-causing SVs were observed in 12 different genes. Among these, SVs in CLN3, EYS and PRPF31 were found in multiple families. Our study suggests that the contribution of SVs detected by short-read WGS is about 0.25% of our IRD patient cohort and is significantly lower than that of single nucleotide changes and small insertions and deletions.
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- 2023
6. Rate of unspecific bone uptake on PSMA PET is determined by the Scaffold – not the Radionuclide. Letter regarding: “The homunculus of unspecific bone uptakes associated with PSMA- targeted tracers: a systematic review-based definition” and “Cutting back on overdiagnosis – Occam’s razor and unspecific bone uptakes in PSMA PET“
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Rowe, Steven P. and Gorin, Michael A.
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- 2024
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7. Functional Outcomes of Prostate Cancer Treatment with Partial Gland Ablation
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Kaufmann, Basil, Busby, Dallin, Gorin, Michael A., Razdan, Sanjay, editor, and Razdan, Shirin, editor
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- 2024
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8. XOLARIS: A 24-Month, Prospective, Natural History Study of 201 Participants with Retinitis Pigmentosa GTPase Regulator-Associated X-Linked Retinitis Pigmentosa
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Gregory-Evans, Kevin, Koenekoop, Robert, Sankila, Eeva-Marja K., Bygglin, Henrik, Seitsonen, Sanna, Riikonen, Antti, Meunier, Isabelle, Fischer, M. Dominik, Ochakovski, Alex, Stingl, Katarina, Vaheb, Yousof, Richter, Paul, Wozar, Fabian, Reichel, Felix, Gassel, Caroline, Wolfram, Lasse, Fischer, Nora, Peters, Tobias, Wilhelm, Barbara, Seitz, Immanuel, Holz, Frank, Reinking, Katharina, Clemens, Amelie, Völker, Desiree, Herrmann, Philipp, Birtel, Johannes, Schipper, Pascal, Weber, Constance, Bulirsch, Louisa, Hoyng, Carel, Klaver, Caroline, Phan, T.M.L., Van Huet, Ramon, Boon, Camiel, Nguyen, X.T., Talib, M., Trzcionkowska, Kasia, Tussenbroek, Thomas, MacLaren, Robert E., Taylor, Laura J., Cehajic-Kapetanovic, Jasmina, Josan, Amandeep S., Yusuf, Imran H., Jasani, Kirti, Menghini, Moreno, Nanda, Anika, Rehman, Salwah, Jolly, Jasleen K., Buckley, Thomas M.W., Lotery, Andrew, Thulsidharan, Suresh, Khandhadia, Samir, Tsokolas, Georgios, Black, Graeme, Megaw, Roly, Bishop, Paul, Mukherjee, Rajarshi, Mohla, Aditi, McKibbin, Martin, Mukherjee, Raj, Lam, Byron L., Mendoza-Santiesteban, Carlos, Horowitz, Jason, Tsang, Stephen, Pennesi, Mark E., Yang, Paul, Lauer, Andreas K., Weleber, Richard G., Birch, David, Coors, Lori, Spencer, Rand, Csaky, Karl, Anand, Rajiv, Wang, Yi-Zhong, Gorin, Michael, Stepien, Kimberly, Duncan, Jacque L., Stewart, Jay, Moore, Anthony, Stout, J. Timothy, Weng, Christina, Leung, Ella, Schlle, Tahira, Bakall, Benjamin, Klein, Kendra, Bernstein, Paul, Hartnett, Mary Elizabeth, Mathias, Marc, Siringo, Frank, Pecen, Paula, Aleman, Tomas, McGuire, Albert, Nagiel, Aaron, Larsen, Michael, Ferraz Sallum, Juliana Maria, Ribeiro, Lucas, de Azevedo Amaral, Rebeca, Gow, James A., Li, Jiang, and Tsang, So-Fai
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- 2025
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9. Measurement of the Inner Macular Layers for Monitoring of Glaucoma: Confounding Effects of Age-Related Macular Degeneration.
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Chew, Leila, Mohammadzadeh, Vahid, Mohammadi, Massood, Toriz, Veronica, Rosa, Nancy, Gorin, Michael B, Amini, Navid, and Nouri-Mahdavi, Kouros
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Macula Lutea ,Humans ,Glaucoma ,Retinal Diseases ,Macular Degeneration ,Tomography ,Optical Coherence ,Retrospective Studies ,Age-related macular degeneration ,Drusen ,Inner nuclear layer ,Inner plexiform layer ,Inner retinal layers ,Macula ,OCT ,Optical coherence tomography ,Retinal atrophy ,Eye Disease and Disorders of Vision ,Neurosciences ,Neurodegenerative ,Aging ,Eye - Abstract
ObjectiveTo investigate the confounding effect of nonexudative age-related macular degeneration (AMD), specifically drusen and outer retinal atrophy, on the architecture and automated segmentation of the inner retinal layers as measured with OCT.DesignObservational cross-sectional study.SubjectsTwo hundred sixty-three consecutive eyes with nonexudative AMD were identified through a retrospective chart review. Exclusion criteria were a diagnosis of glaucoma or glaucoma suspect, other retinal pathology affecting the macula, axial length > 26.5 mm or spherical equivalent less than -6 diopters, any other optic nerve or neurologic disorders, or poor image quality.MethodsDrusen were automatically segmented on macular OCT B-scans with a publicly available and validated deep learning approach. Automated segmentation of the inner plexiform layer (IPL)/inner nuclear layer (INL) boundary was carried out with the device's proprietary software.Main outcome measuresQuality of segmentation of the IPL/INL boundary as a function of drusen size and presence of inner retinal layer displacement in the area of macular pathology (drusen or atrophy).ResultsOne hundred twenty-five eyes (65 patients) met the inclusion criteria. Drusen size varied between 16 and 272 μm (mean, 118 μm). Automated segmentation had a 22% chance of failure if the drusen height was between 145 and 185 μm and was most likely to fail with drusen heights above 185 μm. When drusen height was normalized by total retinal thickness, segmentation failed 36% of the time when the drusen to total retinal thickness ratio was 0.45 or above. Images were likely to show displacement of inner retinal layers with drusen heights above 176 μm and a normalized drusen height ratio of 0.5 or higher. Eighty-seven percent of images with outer retinal atrophy displayed incorrect segmentation.ConclusionsOuter retinal diseases can alter the retinal topography and affect the segmentation accuracy of the inner retinal layers. Large drusen may cause segmentation error and compression of the inner macular layers. Geographic atrophy confounds automated segmentation in a high proportion of eyes. Clinicians should be cognizant of the effects of outer retinal disease on the inner retinal layer measurements when interpreting the results of macular OCT imaging in patients with glaucoma.
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- 2023
10. Systems genomics in age-related macular degeneration
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Hollander, Anneke I den, Mullins, Robert F, Orozco, Luz D, Voigt, Andrew P, Chen, Hsu-Hsin, Strunz, Tobias, Grassmann, Felix, Haines, Jonathan L, Kuiper, Jonas JW, Tumminia, Santa J, Allikmets, Rando, Hageman, Gregory S, Stambolian, Dwight, Klaver, Caroline CW, Boeke, Jef D, Chen, Hao, Honigberg, Lee, Katti, Suresh, Frazer, Kelly A, Weber, Bernhard HF, and Gorin, Michael B
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Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Neurodegenerative ,Biotechnology ,Genetics ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Human Genome ,Stem Cell Research ,Aging ,Stem Cell Research - Induced Pluripotent Stem Cell ,Macular Degeneration ,Neurosciences ,Eye Disease and Disorders of Vision ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Generic health relevance ,Eye ,Humans ,Retinal Pigment Epithelium ,Complement System Proteins ,Choroid ,Proteins ,Genomics ,Polymorphism ,Single Nucleotide ,Complement Factor H ,High-Temperature Requirement A Serine Peptidase 1 ,Age-related macular degeneration ,Omics ,Systems genomics ,Single cell sequencing ,Expression quantitative trait locus ,Complement system ,iPSc-RPE ,Induced pluripotent stem cells ,Clinical trial ,Polygenic risk scores ,Medical Biochemistry and Metabolomics ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
Genomic studies in age-related macular degeneration (AMD) have identified genetic variants that account for the majority of AMD risk. An important next step is to understand the functional consequences and downstream effects of the identified AMD-associated genetic variants. Instrumental for this next step are 'omics' technologies, which enable high-throughput characterization and quantification of biological molecules, and subsequent integration of genomics with these omics datasets, a field referred to as systems genomics. Single cell sequencing studies of the retina and choroid demonstrated that the majority of candidate AMD genes identified through genomic studies are expressed in non-neuronal cells, such as the retinal pigment epithelium (RPE), glia, myeloid and choroidal cells, highlighting that many different retinal and choroidal cell types contribute to the pathogenesis of AMD. Expression quantitative trait locus (eQTL) studies in retinal tissue have identified putative causal genes by demonstrating a genetic overlap between gene regulation and AMD risk. Linking genetic data to complement measurements in the systemic circulation has aided in understanding the effect of AMD-associated genetic variants in the complement system, and supports that protein QTL (pQTL) studies in plasma or serum samples may aid in understanding the effect of genetic variants and pinpointing causal genes in AMD. A recent epigenomic study fine-mapped AMD causal variants by determing regulatory regions in RPE cells differentiated from induced pluripotent stem cells (iPSC-RPE). Another approach that is being employed to pinpoint causal AMD genes is to produce synthetic DNA assemblons representing risk and protective haplotypes, which are then delivered to cellular or animal model systems. Pinpointing causal genes and understanding disease mechanisms is crucial for the next step towards clinical translation. Clinical trials targeting proteins encoded by the AMD-associated genomic loci C3, CFB, CFI, CFH, and ARMS2/HTRA1 are currently ongoing, and a phase III clinical trial for C3 inhibition recently showed a modest reduction of lesion growth in geographic atrophy. The EYERISK consortium recently developed a genetic test for AMD that allows genotyping of common and rare variants in AMD-associated genes. Polygenic risk scores (PRS) were applied to quantify AMD genetic risk, and may aid in predicting AMD progression. In conclusion, genomic studies represent a turning point in our exploration of AMD. The results of those studies now serve as a driving force for several clinical trials. Expanding to omics and systems genomics will further decipher function and causality from the associations that have been reported, and will enable the development of therapies that will lessen the burden of AMD.
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- 2022
11. 15-year biochemical failure, metastasis, salvage therapy, and cancer-specific and overall survival rates in men treated with robotic radical prostatectomy for PSA-screen detected prostate cancer
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Sood, Akshay, Grauer, Ralph, Diaz-Insua, Mireya, Tewari, Ashutosh K., Hemal, Ashok K., Shrivastava, Alok, Peabody, James O., Jeong, Wooju, Abdollah, Firas, Rudzinski, Jan K., Andrews, Jack R., Gorin, Michael A., Bhandari, Mahendra, and Menon, Mani
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- 2023
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12. Variant-specific changes in RAC3 function disrupt corticogenesis in neurodevelopmental phenotypes.
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Scala, Marcello, Nishikawa, Masashi, Ito, Hidenori, Tabata, Hidenori, Khan, Tayyaba, Accogli, Andrea, Davids, Laura, Ruiz, Anna, Chiurazzi, Pietro, Cericola, Gabriella, Schulte, Björn, Monaghan, Kristin G, Begtrup, Amber, Torella, Annalaura, Pinelli, Michele, Denommé-Pichon, Anne Sophie, Vitobello, Antonio, Racine, Caroline, Mancardi, Maria Margherita, Kiss, Courtney, Guerin, Andrea, Wu, Wendy, Gabau Vila, Elisabeth, Mak, Bryan C, Martinez-Agosto, Julian A, Gorin, Michael B, Duz, Bugrahan, Bayram, Yavuz, Carvalho, Claudia MB, Vengoechea, Jaime E, Chitayat, David, Tan, Tiong Yang, Callewaert, Bert, Kruse, Bernd, Bird, Lynne M, Faivre, Laurence, Zollino, Marcella, Biskup, Saskia, Undiagnosed Diseases Network, Telethon Undiagnosed Diseases Program, Striano, Pasquale, Nigro, Vincenzo, Severino, Mariasavina, Capra, Valeria, Costain, Gregory, and Nagata, Koh Ichi
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Undiagnosed Diseases Network ,Telethon Undiagnosed Diseases Program ,Neurons ,Animals ,Humans ,Mice ,rac GTP-Binding Proteins ,Phenotype ,p21-Activated Kinases ,Neurodevelopmental Disorders ,RAC3 ,axon guidance ,brain development ,neuronal migration ,small GTPase ,Neurosciences ,Pediatric ,Congenital Structural Anomalies ,Brain Disorders ,Aetiology ,2.1 Biological and endogenous factors ,Neurological ,RAC3 ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery - Abstract
Variants in RAC3, encoding a small GTPase RAC3 which is critical for the regulation of actin cytoskeleton and intracellular signal transduction, are associated with a rare neurodevelopmental disorder with structural brain anomalies and facial dysmorphism. We investigated a cohort of 10 unrelated participants presenting with global psychomotor delay, hypotonia, behavioural disturbances, stereotyped movements, dysmorphic features, seizures and musculoskeletal abnormalities. MRI of brain revealed a complex pattern of variable brain malformations, including callosal abnormalities, white matter thinning, grey matter heterotopia, polymicrogyria/dysgyria, brainstem anomalies and cerebellar dysplasia. These patients harboured eight distinct de novo RAC3 variants, including six novel variants (NM_005052.3): c.34G > C p.G12R, c.179G > A p.G60D, c.186_188delGGA p.E62del, c.187G > A p.D63N, c.191A > G p.Y64C and c.348G > C p.K116N. We then examined the pathophysiological significance of these novel and previously reported pathogenic variants p.P29L, p.P34R, p.A59G, p.Q61L and p.E62K. In vitro analyses revealed that all tested RAC3 variants were biochemically and biologically active to variable extent, and exhibited a spectrum of different affinities to downstream effectors including p21-activated kinase 1. We then focused on the four variants p.Q61L, p.E62del, p.D63N and p.Y64C in the Switch II region, which is essential for the biochemical activity of small GTPases and also a variation hot spot common to other Rho family genes, RAC1 and CDC42. Acute expression of the four variants in embryonic mouse brain using in utero electroporation caused defects in cortical neuron morphology and migration ending up with cluster formation during corticogenesis. Notably, defective migration by p.E62del, p.D63N and p.Y64C were rescued by a dominant negative version of p21-activated kinase 1. Our results indicate that RAC3 variants result in morphological and functional defects in cortical neurons during brain development through variant-specific mechanisms, eventually leading to heterogeneous neurodevelopmental phenotypes.
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- 2022
13. Molecular imaging for non-invasive risk stratification of renal masses
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Rowe, Steven P., Islam, Md Zobaer, Viglianti, Benjamin, Solnes, Lilja B., Baraban, Ezra, Gorin, Michael A., and Oldan, Jorge D.
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- 2024
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14. Transperineal Versus Transrectal Magnetic Resonance Imaging–targeted and Systematic Prostate Biopsy to Prevent Infectious Complications: The PREVENT Randomized Trial
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Hu, Jim C., Assel, Melissa, Allaf, Mohamad E., Ehdaie, Behfar, Vickers, Andrew J., Cohen, Andrew J., Ristau, Benjamin T., Green, David A., Han, Misop, Rezaee, Michael E., Pavlovich, Christian P., Montgomery, Jeffrey S., Kowalczyk, Keith J., Ross, Ashley E., Kundu, Shilajit D., Patel, Hiten D., Wang, Gerald J., Graham, John N., Shoag, Jonathan E., Ghazi, Ahmed, Singla, Nirmish, Gorin, Michael A., Schaeffer, Anthony J., and Schaeffer, Edward M.
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- 2024
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15. Interassay Variability and Clinical Implications of Five Different Prostate-specific Antigen Assays
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Kaufmann, Basil, Pellegrino, Paloma, Zuluaga, Laura, Ben-David, Reuben, Müntener, Michael, Keller, Etienne X., Spanaus, Katharina, von Eckardstein, Arnold, Gorin, Michael A., and Poyet, Cédric
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- 2024
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16. Consensus Guidelines for Ocular Surveillance of von Hippel-Lindau Disease
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Daniels, Anthony B., Chang, Emmanuel Y., Chew, Emily Y., Gombos, Dan S., Gorin, Michael B., Shields, Carol L., and Wiley, Henry E.
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- 2024
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17. Assessing Variant Causality and Severity Using Retinal Pigment Epithelial Cells Derived from Stargardt Disease Patients
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Matynia, Anna, Wang, Jun, Kim, Sangbae, Li, Yumei, Dimashkie, Anupama, Jiang, Zhichun, Hu, Jane, Strom, Samuel P, Radu, Roxana A, Chen, Rui, and Gorin, Michael B
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Stem Cell Research ,Stem Cell Research - Induced Pluripotent Stem Cell ,Clinical Research ,Neurosciences ,Biotechnology ,Genetics ,Eye Disease and Disorders of Vision ,Human Genome ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,2.1 Biological and endogenous factors ,Aetiology ,ATP-Binding Cassette Transporters ,Epithelial Cells ,Humans ,Phenotype ,Retinal Pigments ,Stargardt Disease ,induced pluripotent stem cells ,retinal pigment epithelium ,Stargardt disease ,macular degeneration ,molecular genetics ,mutation ,transcriptome ,allele specific imbalance ,genotype-phenotype correlation ,Biomedical Engineering ,Opthalmology and Optometry - Abstract
PurposeModern molecular genetics has revolutionized gene discovery, genetic diagnoses, and precision medicine yet many patients remain unable to benefit from these advances as disease-causing variants remain elusive for up to half of Mendelian genetic disorders. Patient-derived induced pluripotent stem (iPS) cells and transcriptomics were used to identify the fate of unsolved ABCA4 alleles in patients with Stargardt disease.MethodsMultiple independent iPS lines were generated from skin biopsies of three patients with Stargardt disease harboring a single identified pathogenic ABCA4 variant. Derived retinal pigment epithelial cells (dRPE) from a normal control and patient cells were subjected to RNA-Seq on the Novaseq6000 platform, analyzed using DESeq2 with calculation of allele specific imbalance from the pathogenic or a known linked variant. Protein analysis was performed using the automated Simple Western system.ResultsNine dRPE samples were generated, with transcriptome analysis on eight. Allele-specific expression indicated normal transcripts expressed from splice variants albeit at low levels, and missense transcripts expressed at near-normal levels. Corresponding protein was not easily detected. Patient phenotype correlation indicated missense variants expressed at high levels have more deleterious outcomes. Transcriptome analysis suggests mitochondrial membrane biodynamics and the unfolded protein response pathway may be relevant in Stargardt disease.ConclusionsPatient-specific iPS-derived RPE cells set the stage to assess non-expressing variants in difficult-to-detect genomic regions using easily biopsied tissue.Translational relevanceThis "Disease in a Dish" approach is likely to enhance the ability of patients to participate in and benefit from clinical trials while providing insights into perturbations in RPE biology.
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- 2022
18. Membrane Attack Complex Mediates Retinal Pigment Epithelium Cell Death in Stargardt Macular Degeneration
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Ng, Eunice Sze Yin, Kady, Nermin, Hu, Jane, Dave, Arpita, Jiang, Zhichun, Pei, Jacqueline, Gorin, Michael B, Matynia, Anna, and Radu, Roxana A
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Eye Disease and Disorders of Vision ,Neurosciences ,Macular Degeneration ,Neurodegenerative ,Underpinning research ,1.1 Normal biological development and functioning ,Eye ,Humans ,Stargardt Disease ,Complement Membrane Attack Complex ,Retinal Pigment Epithelium ,ATP-Binding Cassette Transporters ,Complement System Proteins ,Cell Death ,recessive Stargardt disease ,retinal pigment epithelium ,complement system ,bisretinoid-lipofuscin ,"disease-in-a-dish" ,retinoids ,macular degeneration ,ABCA4 ,“disease-in-a-dish” - Abstract
Recessive Stargardt disease (STGD1) is an inherited retinopathy caused by mutations in the ABCA4 gene. The ABCA4 protein is a phospholipid-retinoid flippase in the outer segments of photoreceptors and the internal membranes of retinal pigment epithelial (RPE) cells. Here, we show that RPE cells derived via induced pluripotent stem-cell from a molecularly and clinically diagnosed STGD1 patient exhibited reduced ABCA4 protein and diminished activity compared to a normal subject. Consequently, STGD1 RPE cells accumulated intracellular autofluorescence-lipofuscin and displayed increased complement C3 activity. The level of C3 inversely correlated with the level of CD46, an early negative regulator of the complement cascade. Persistent complement dysregulation led to deposition of the membrane attack complex on the surface of RPE cells, decrease in transepithelial resistance, and subsequent cell death. These findings are strong evidence of complement-mediated RPE cell damage in STGD1, in the absence of photoreceptors, caused by reduced CD46 regulatory protein.
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- 2022
19. Expanding the clinical phenotype in patients with disease causing variants associated with atypical Usher syndrome
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Igelman, Austin D, Ku, Cristy, da Palma, Mariana Matioli, Georgiou, Michalis, Schiff, Elena R, Lam, Byron L, Sankila, Eeva-Marja, Ahn, Jeeyun, Pyers, Lindsey, Vincent, Ajoy, Sallum, Juliana Maria Ferraz, Zein, Wadih M, Oh, Jin Kyun, Maldonado, Ramiro S, Ryu, Joseph, Tsang, Stephen H, Gorin, Michael B, Webster, Andrew R, Michaelides, Michel, Yang, Paul, and Pennesi, Mark E
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Clinical Research ,Genetics ,Eye Disease and Disorders of Vision ,Neurosciences ,Neurodegenerative ,Pediatric ,Orphan Drug ,Rare Diseases ,2.1 Biological and endogenous factors ,Aetiology ,Eye ,Adolescent ,Adult ,Aged ,Arylsulfatases ,Autoantigens ,Cell Cycle Proteins ,Codon ,Nonsense ,Cone-Rod Dystrophies ,Female ,Frameshift Mutation ,Genetic Testing ,Hearing Loss ,Sensorineural ,Humans ,Male ,Middle Aged ,Monoacylglycerol Lipases ,Multimodal Imaging ,Phenotype ,Retinal Pigment Epithelium ,Retrospective Studies ,Tomography ,Optical Coherence ,Usher Syndromes ,Visual Acuity ,Young Adult ,Atypical usher syndrome ,CEP78 ,cep250 ,ARSG ,ABHD12 ,Opthalmology and Optometry ,Ophthalmology & Optometry - Abstract
Atypical Usher syndrome (USH) is poorly defined with a broad clinical spectrum. Here, we characterize the clinical phenotype of disease caused by variants in CEP78, CEP250, ARSG, and ABHD12.Chart review evaluating demographic, clinical, imaging, and genetic findings of 19 patients from 18 families with a clinical diagnosis of retinal disease and confirmed disease-causing variants in CEP78, CEP250, ARSG, or ABHD12.CEP78-related disease included sensorineural hearing loss (SNHL) in 6/7 patients and demonstrated a broad phenotypic spectrum including: vascular attenuation, pallor of the optic disc, intraretinal pigment, retinal pigment epithelium mottling, areas of mid-peripheral hypo-autofluorescence, outer retinal atrophy, mild pigmentary changes in the macula, foveal hypo-autofluorescence, and granularity of the ellipsoid zone. Nonsense and frameshift variants in CEP250 showed mild retinal disease with progressive, non-congenital SNHL. ARSG variants resulted in a characteristic pericentral pattern of hypo-autofluorescence with one patient reporting non-congenital SNHL. ABHD12-related disease showed rod-cone dystrophy with macular involvement, early and severe decreased best corrected visual acuity, and non-congenital SNHL ranging from unreported to severe.This study serves to expand the clinical phenotypes of atypical USH. Given the variable findings, atypical USH should be considered in patients with peripheral and macular retinal disease even without the typical RP phenotype especially when SNHL is noted. Additionally, genetic screening may be useful in patients who have clinical symptoms and retinal findings even in the absence of known SNHL given the variability of atypical USH.
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- 2021
20. Utilization of focal therapy for patients discontinuing active surveillance of prostate cancer: Recommendations of an international Delphi consensus
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Tan, Wei Phin, Rastinehad, Ardeshir R, Klotz, Laurence, Carroll, Peter R, Emberton, Mark, Feller, John F, George, Arvin K, Gill, Inderbir S, Gupta, Rajan T, Katz, Aaron E, Lebastchi, Amir H, Marks, Leonard S, Marra, Giancarlo, Pinto, Peter A, Song, Daniel Y, Sidana, Abhinav, Ward, John F, Sanchez-Salas, Rafael, de la Rosette, Jean, Polascik, Thomas J, Authors, Focal Therapy Group, Katz, Aaron, Aminsharifi, Alireza, Lebastchi, Amir, Abreu, Andre, Villers, Arnauld, Schulman, Ariel, Rastinehad, Ardeshir, George, Arvin, Oto, Aytekin, Turkbey, Baris, Malavaud, Bernard, Muller, Berrend, Moore, Caroline, Eberli, Daniel, Margolis, Daniel, Song, Daniel, Lomas, Derek, Orabi, Hazem, Lepor, Herbert, Tan, Hui Meng, Jambor, Ivan, Grummet, Jeremy, Feller, John, Ward, John, Colemen, Jonathan, Gregg, Justin, Tay, Kae Jack, Marks, Leonard, Deane, Leslie, Laguna, M Pilar, Kimura, Masaki, Tsivian, Matvey, Gorin, Michael, Siddiqui, Minhaj, Ukimura, Osamu, Gontero, Paolo, Carroll, Peter, Pinto, Peter, Mozer, Pierre, Arcot, Ro, Taneja, Samir, Ghai, Sangeet, Crouzet, Sebastian, Mehralivand, Sherif, Joniau, Steven, Shoji, Sunao, Shiraishi, Takumi, Polascik, Thomas, Shin, Toshitaka, Lindnet, Uri, Tammisetti, Varaha, van den Bos, Willemien, and Matsuoka, Yoh
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Cancer ,Urologic Diseases ,Prostate Cancer ,Clinical Research ,Ablation Techniques ,Aged ,Aged ,80 and over ,Consensus ,Delphi Technique ,Humans ,Male ,Middle Aged ,Prostatic Neoplasms ,Watchful Waiting ,Localized prostate cancer ,Focal therapy ,Partial gland ablation ,Active surveillance ,Focal Therapy Group Authors ,Urology & Nephrology ,Clinical sciences ,Oncology and carcinogenesis - Abstract
BackgroundWith the advancement of imaging technology, focal therapy (FT) has been gaining acceptance for the treatment of select patients with localized prostate cancer (CaP). We aim to provide details of a formal physician consensus on the utilization of FT for patients with CaP who are discontinuing active surveillance (AS).MethodsA 3-stage Delphi consensus on CaP and FT was conducted. Consensus was defined as agreement by ≥80% of physicians. An in-person meeting was attended by 17 panelists to formulate the consensus statement.ResultsFifty-six respondents participated in this interdisciplinary consensus study (82% urologist, 16% radiologist, 2% radiation oncology). The participants confirmed that there is a role for FT in men discontinuing AS (48% strongly agree, 39% agree). The benefit of FT over radical therapy for men coming off AS is: less invasive (91%), has a greater likelihood to preserve erectile function (91%), has a greater likelihood to preserve urinary continence (91%), has fewer side effects (86%), and has early recovery post-treatment (80%). Patients will need to undergo mpMRI of the prostate and/or a saturation biopsy to determine if they are potential candidates for FT. Our limitations include respondent's biases and that the participants of this consensus may not represent the larger medical community.ConclusionsFT can be offered to men coming off AS between the age of 60 to 80 with grade group 2 localized cancer. This consensus from a multidisciplinary, multi-institutional, international expert panel provides a contemporary insight utilizing FT for CaP in select patients who are discontinuing AS.
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- 2021
21. PET/Computed Tomography Transformation of Oncology: Kidney and Urinary Tract Cancers
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Oldan, Jorge D., Schroeder, Jennifer A., Hoffman-Censits, Jean, Rathmell, W. Kimryn, Milowsky, Matthew I., Solnes, Lilja B., Nimmagadda, Sridhar, Gorin, Michael A., Khandani, Amir H., and Rowe, Steven P.
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- 2024
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22. Validation of a Zero-shot Learning Natural Language Processing Tool to Facilitate Data Abstraction for Urologic Research
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Kaufmann, Basil, Busby, Dallin, Das, Chandan Krushna, Tillu, Neeraja, Menon, Mani, Tewari, Ashutosh K., and Gorin, Michael A.
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- 2024
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23. Applications of artificial intelligence in prostate cancer histopathology
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Busby, Dallin, Grauer, Ralph, Pandav, Krunal, Khosla, Akshita, Jain, Parag, Menon, Mani, Haines, G Kenneth, III, Cordon-Cardo, Carlos, Gorin, Michael A., and Tewari, Ashutosh K.
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- 2024
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24. A Novel Machine Learning-based Predictive Model of Clinically Significant Prostate Cancer and Online Risk Calculator
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Vasconcelos Ordones, Flavio, Kawano, Paulo Roberto, Vermeulen, Lodewikus, Hooshyari, Ali, Scholtz, David, Gilling, Peter John, Foreman, Darren, Kaufmann, Basil, Poyet, Cedric, Gorin, Michael, Barbosa, Abner Macola Pacheco, da Rocha, Naila Camila, and de Andrade, Luis Gustavo Modelli
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- 2024
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25. A Practical Guide to the Pearls and Pitfalls of PSMA PET Imaging
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Voter, Andrew F., Werner, Rudolf A., Savas, Hatice, Gafita, Andrei, Ross, Ashley E., Gorin, Michael A., Solnes, Lilja B., Pomper, Martin G., Rowe, Steven P., and Sheikhbahaei, Sara
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- 2024
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26. Diagnostic Performance of 18F-DCFPyL-PET/CT in Men with Biochemically Recurrent Prostate Cancer: Results from the CONDOR Phase III, Multicenter StudyCONDOR Trial
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Morris, Michael J, Rowe, Steven P, Gorin, Michael A, Saperstein, Lawrence, Pouliot, Frédéric, Josephson, David, Wong, Jeffrey YC, Pantel, Austin R, Cho, Steve Y, Gage, Kenneth L, Piert, Morand, Iagaru, Andrei, Pollard, Janet H, Wong, Vivien, Jensen, Jessica, Lin, Tess, Stambler, Nancy, Carroll, Peter R, Siegel, Barry A, and Group, CONDOR Study
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Clinical Trials and Supportive Activities ,Bioengineering ,Biomedical Imaging ,Cancer ,Clinical Research ,Prostate Cancer ,Urologic Diseases ,Adult ,Aged ,Aged ,80 and over ,Humans ,Lysine ,Male ,Middle Aged ,Neoplasm Recurrence ,Local ,Positron Emission Tomography Computed Tomography ,Prospective Studies ,Prostate-Specific Antigen ,Prostatic Neoplasms ,Urea ,CONDOR Study Group ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
PurposeCurrent FDA-approved imaging modalities are inadequate for localizing prostate cancer biochemical recurrence (BCR). 18F-DCFPyL is a highly selective, small-molecule prostate-specific membrane antigen-targeted PET radiotracer. CONDOR was a prospective study designed to determine the performance of 18F-DCFPyL-PET/CT in patients with BCR and uninformative standard imaging.Experimental designMen with rising PSA ≥0.2 ng/mL after prostatectomy or ≥2 ng/mL above nadir after radiotherapy were eligible. The primary endpoint was correct localization rate (CLR), defined as positive predictive value with an additional requirement of anatomic lesion colocalization between 18F-DCFPyL-PET/CT and a composite standard of truth (SOT). The SOT consisted of, in descending priority (i) histopathology, (ii) subsequent correlative imaging findings, or (iii) post-radiation PSA response. The trial was considered a success if the lower bound of the 95% confidence interval (CI) for CLR exceeded 20% for two of three 18F-DCFPyL-PET/CT readers. Secondary endpoints included change in intended management and safety.ResultsA total of 208 men with a median baseline PSA of 0.8 ng/mL (range: 0.2-98.4 ng/mL) underwent 18F-DCFPyL-PET/CT. The CLR was 84.8%-87.0% (lower bound of 95% CI: 77.8-80.4). A total of 63.9% of evaluable patients had a change in intended management after 18F-DCFPyL-PET/CT. The disease detection rate was 59% to 66% (at least one lesion detected per patient by 18F-DCFPyL-PET/CT by central readers).ConclusionsPerformance of 18F-DCFPyL-PET/CT achieved the study's primary endpoint, demonstrating disease localization in the setting of negative standard imaging and providing clinically meaningful and actionable information. These data further support the utility of 18F-DCFPyL-PET/CT to localize disease in men with recurrent prostate cancer.See related commentary by True and Chen, p. 3512.
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- 2021
27. A Phase 2/3 Prospective Multicenter Study of the Diagnostic Accuracy of Prostate Specific Membrane Antigen PET/CT with 18F-DCFPyL in Prostate Cancer Patients (OSPREY).
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Pienta, Kenneth J, Gorin, Michael A, Rowe, Steven P, Carroll, Peter R, Pouliot, Frédéric, Probst, Stephan, Saperstein, Lawrence, Preston, Mark A, Alva, Ajjai S, Patnaik, Akash, Durack, Jeremy C, Stambler, Nancy, Lin, Tess, Jensen, Jessica, Wong, Vivien, Siegel, Barry A, and Morris, Michael J
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Humans ,Prostatic Neoplasms ,Neoplasm Metastasis ,Urea ,Prostate-Specific Antigen ,Lysine ,Prospective Studies ,Reproducibility of Results ,Aged ,Aged ,80 and over ,Middle Aged ,Male ,Positron Emission Tomography Computed Tomography ,molecular imaging ,neoplasm metastasis ,neoplasm staging ,prostatic neoplasms ,Prevention ,Cancer ,Clinical Trials and Supportive Activities ,Urologic Diseases ,Clinical Research ,Aging ,Prostate Cancer ,4.1 Discovery and preclinical testing of markers and technologies ,Detection ,screening and diagnosis ,4.2 Evaluation of markers and technologies ,Clinical Sciences ,Urology & Nephrology - Abstract
PurposeProstate specific membrane antigen-targeted positron emission tomography/computerized tomography has the potential to improve the detection and localization of prostate cancer. OSPREY was a prospective trial designed to determine the diagnostic performance of 18F-DCFPyL-positron emission tomography/computerized tomography for detecting sites of metastatic prostate cancer.Materials and methodsTwo patient populations underwent 18F-DCFPyL-positron emission tomography/computerized tomography. Cohort A enrolled men with high-risk prostate cancer undergoing radical prostatectomy with pelvic lymphadenectomy. Cohort B enrolled patients with suspected recurrent/metastatic prostate cancer on conventional imaging. Three blinded central readers evaluated the 18F-DCFPyL-positron emission tomography/computerized tomography. Diagnostic performance of 18F-DCFPyL-positron emission tomography/computerized tomography was based on imaging results compared to histopathology. In cohort A, detection of pelvic nodal disease (with specificity and sensitivity as co-primary end points) and of extrapelvic metastases were evaluated. In cohort B, sensitivity and positive predictive value for prostate cancer within biopsied lesions were evaluated.ResultsA total of 385 patients were enrolled. In cohort A (252 evaluable patients), 18F-DCFPyL-positron emission tomography/computerized tomography had median specificity of 97.9% (95% CI: 94.5%-99.4%) and median sensitivity of 40.3% (28.1%-52.5%, not meeting prespecified end point) among 3 readers for pelvic nodal involvement; median positive predictive value and negative predictive value were 86.7% (69.7%-95.3%) and 83.2% (78.2%-88.1%), respectively. In cohort B (93 evaluable patients, median prostate specific antigen 11.3 ng/ml), median sensitivity and positive predictive value for extraprostatic lesions were 95.8% (87.8%-99.0%) and 81.9% (73.7%-90.2%), respectively.ConclusionsThe primary end point for specificity was met while the primary end point for sensitivity was not. The high positive predictive value observed in both cohorts indicates that 18F-DCFPyL-positive lesions are likely to represent disease, supporting the potential utility of 18F-DCFPyL-positron emission tomography/computerized tomography to stage men with high-risk prostate cancer for nodal or distant metastases, and reliably detect sites of disease in men with suspected metastatic prostate cancer.
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- 2021
28. Characterization of the Spectrum of Ophthalmic Changes in Patients With Alagille Syndrome.
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da Palma, Mariana, Igelman, Austin, Ku, Cristy, Burr, Amanda, You, Jia, Place, Emily, Wang, Nan-Kai, Oh, Jin, Branham, Kari, Zhang, Xinxin, Ahn, Jeeyun, Gorin, Michael, Lam, Byron, Ronquillo, Cecinio, Bernstein, Paul, Nagiel, Aaron, Huckfeldt, Rachel, Cabrera, Michelle, Kelly, John, Bakall, Benjamin, Iannaccone, Alessandro, Hufnagel, Robert, Zein, Wadih, Koenekoop, Robert, Birch, David, Yang, Paul, Fahim, Abigail, and Pennesi, Mark
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Adult ,Alagille Syndrome ,Diagnosis ,Differential ,Eye Diseases ,Hereditary ,Female ,Fluorescein Angiography ,Genetic Testing ,Humans ,Jagged-1 Protein ,Male ,Medical Records ,Mutation ,Optic Disk ,Optical Imaging ,Retina ,Tomography ,Optical Coherence ,Visual Acuity ,Visual Field Tests - Abstract
PURPOSE: The purpose of this study was to characterize the phenotypic spectrum of ophthalmic findings in patients with Alagille syndrome. METHODS: We conducted a retrospective, observational, multicenter, study on 46 eyes of 23 subjects with Alagille syndrome. We reviewed systemic and ophthalmologic data extracted from medical records, color fundus photography, fundus autofluorescence, optical coherence tomography, visual fields, electrophysiological assessments, and molecular genetic findings. RESULTS: Cardiovascular abnormalities were found in 83% of all cases (of those, 74% had cardiac murmur), whereas 61% had a positive history of hepatobiliary issues, and musculoskeletal anomalies were present in 61% of all patients. Dysmorphic facies were present in 16 patients, with a broad forehead being the most frequent feature. Ocular symptoms were found in 91%, with peripheral vision loss being the most frequent complaint. Median (range) Snellen visual acuity of all eyes was 20/25 (20/20 to hand motion [HM]). Anterior segment abnormalities were present in 74% of the patients; of those, posterior embryotoxon was the most frequent finding. Abnormalities of the optic disc were found in 52%, and peripheral retinal abnormalities were the most frequent ocular finding in this series, found in 96% of all patients. Fifteen JAG1 mutations were identified in 16 individuals; of those, 6 were novel. CONCLUSIONS: This study reports a cohort of patients with Alagille syndrome in which peripheral chorioretinal changes were more frequent than posterior embryotoxon, the most frequent ocular finding according to a number of previous studies. We propose that these peripheral chorioretinal changes are a new hallmark to help diagnose this syndrome.
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- 2021
29. Assessing the Clinical Utility of Expanded Macular OCTs Using Machine Learning
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Lin, Andrew C, Lee, Cecilia S, Blazes, Marian, Lee, Aaron Y, and Gorin, Michael B
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Clinical Research ,Neurosciences ,Biomedical Imaging ,Diabetes ,Eye Disease and Disorders of Vision ,Macular Degeneration ,Bioengineering ,Aging ,Neurodegenerative ,Detection ,screening and diagnosis ,4.1 Discovery and preclinical testing of markers and technologies ,Eye ,Good Health and Well Being ,Artificial Intelligence ,Diabetic Retinopathy ,Glaucoma ,Open-Angle ,Humans ,Machine Learning ,Macular Edema ,machine learning ,primary open-angle glaucoma ,optical coherence tomography ,age-related macular degeneration ,diabetic macular edema ,Biomedical Engineering ,Opthalmology and Optometry - Abstract
PurposeOptical coherence tomography (OCT) is widely used in the management of retinal pathologies, including age-related macular degeneration (AMD), diabetic macular edema (DME), and primary open-angle glaucoma (POAG). We used machine learning techniques to understand diagnostic performance gains from expanding macular OCT B-scans compared with foveal-only OCT B-scans for these conditions.MethodsElectronic medical records were extracted to obtain 61 B-scans per eye from patients with AMD, diabetic retinopathy, or POAG. We constructed deep neural networks and random forest ensembles and generated area under the receiver operating characteristic (AUROC) and area under the precision recall (AUPR) curves.ResultsAfter extracting 630,000 OCT images, we achieved improved AUROC and AUPR curves when comparing the central image (one B-scan) to all images (61 B-scans). The AUROC and AUPR points of diminishing return for diagnostic accuracy for macular OCT coverage were found to be within 2.75 to 4.00 mm (14-19 B-scans), 4.25 to 4.50 mm (20-21 B-scans), and 4.50 to 6.25 mm (21-28 B-scans) for AMD, DME, and POAG, respectively. All models with >0.25 mm of coverage had statistically significantly improved AUROC/AUPR curves for all diseases (P < 0.05).ConclusionsSystematically expanded macular coverage models demonstrated significant differences in total macular coverage required for improved diagnostic accuracy, with the largest macular area being relevant in POAG followed by DME and then AMD. These findings support our hypothesis that the extent of macular coverage by OCT imaging in the clinical setting, for any of the three major disorders, has a measurable impact on the functionality of artificial intelligence decision support.Translational relevanceWe used machine learning techniques to improve OCT imaging standards for common retinal disease diagnoses.
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- 2021
30. Patient Reported Outcomes of Transperineal Prostate Biopsy With Tumescent Local Anesthesia
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Myrga, John M., Erpenbeck, Sarah P., Watts, Alexander, Stencel, Michael G., Staniorski, Christopher J., Patnaik, Shyam, Yabes, Jonathan G., Yu, Michelle, Allaway, Matthew J., Gorin, Michael A., Jacobs, Bruce L., and Davies, Benjamin J.
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- 2023
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31. Biopsy and Erectile Functional Outcomes of Partial Prostate Ablation: A Systematic Review and Meta-analysis of Prospective Studies
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Busby, Dallin, Rich, Jordan M., Grauer, Ralph, Kaufmann, Basil, Pandav, Krunal, Sood, Akshay, Tewari, Ashutosh K., Menon, Mani, Patel, Hiten D., and Gorin, Michael A.
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- 2023
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32. Prostate-specific Membrane Antigen Reporting and Data System Version 2.0
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Werner, Rudolf A., Hartrampf, Philipp E., Fendler, Wolfgang P., Serfling, Sebastian E., Derlin, Thorsten, Higuchi, Takahiro, Pienta, Kenneth J., Gafita, Andrei, Hope, Thomas A., Pomper, Martin G., Eiber, Matthias, Gorin, Michael A., and Rowe, Steven P.
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- 2023
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33. Gene-Based Association Testing of Dichotomous Traits With Generalized Functional Linear Mixed Models Using Extended Pedigrees: Applications to Age-Related Macular Degeneration
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Jiang, Yingda, Chiu, Chi-Yang, Yan, Qi, Chen, Wei, Gorin, Michael B, Conley, Yvette P, Lakhal-Chaieb, M’Hamed Lajmi, Cook, Richard J, Amos, Christopher I, Wilson, Alexander F, Bailey-Wilson, Joan E, McMahon, Francis J, Vazquez, Ana I, Yuan, Ao, Zhong, Xiaogang, Xiong, Momiao, Weeks, Daniel E, and Fan, Ruzong
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Macular Degeneration ,Genetics ,Aging ,Neurodegenerative ,Prevention ,Eye Disease and Disorders of Vision ,Human Genome ,2.1 Biological and endogenous factors ,Aetiology ,Eye ,Age-related macular degeneration ,Association study ,Complex diseases ,Extended pedigree ,Generalized functional linear mixed models ,Rare variants ,Statistics ,Econometrics ,Demography ,Statistics & Probability - Abstract
Genetics plays a role in age-related macular degeneration (AMD), a common cause of blindness in the elderly. There is a need for powerful methods for carrying out region-based association tests between a dichotomous trait like AMD and genetic variants on family data. Here, we apply our new generalized functional linear mixed models (GFLMM) developed to test for gene-based association in a set of AMD families. Using common and rare variants, we observe significant association with two known AMD genes: CFH and ARMS2. Using rare variants, we find suggestive signals in four genes: ASAH1, CLEC6A, TMEM63C, and SGSM1. Intriguingly, ASAH1 is down-regulated in AMD aqueous humor, and ASAH1 deficiency leads to retinal inflammation and increased vulnerability to oxidative stress. These findings were made possible by our GFLMM which model the effect of a major gene as a fixed mean, the polygenic contributions as a random variation, and the correlation of pedigree members by kinship coefficients. Simulations indicate that the GFLMM likelihood ratio tests (LRTs) accurately control the Type I error rates. The LRTs have similar or higher power than existing retrospective kernel and burden statistics. Our GFLMM-based statistics provide a new tool for conducting family-based genetic studies of complex diseases. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
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- 2021
34. Landmarks in the evolution of prostate biopsy
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Connor, Martin J., Gorin, Michael A., Eldred-Evans, David, Bass, Edward J., Desai, Ankit, Dudderidge, Tim, Winkler, Mathias, and Ahmed, Hashim U.
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- 2023
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35. Multi-timepoint imaging with PSMA-targeted [18F]F-Florastamin PET/CT: lesion detection and comparison to conventional imaging
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Sheikhbahaei, Sara, Bello Martinez, Ricardo, Markowski, Mark C., Eisenberger, Mario A., Pienta, Kenneth J., Reyes, Diane, Brosnan, Mary Katherine, Spiro, Ergi, AbdAllah, Rehab, Holt, Daniel P., Dannals, Robert F., Werner, Rudolf A., Pomper, Martin G., Gorin, Michael A., Solnes, Lilja B., and Rowe, Steven P.
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- 2023
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36. Mutations in the Kinesin-2 Motor KIF3B Cause an Autosomal-Dominant Ciliopathy.
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Cogné, Benjamin, Latypova, Xenia, Senaratne, Lokuliyanage Dona Samudita, Martin, Ludovic, Koboldt, Daniel C, Kellaris, Georgios, Fievet, Lorraine, Le Meur, Guylène, Caldari, Dominique, Debray, Dominique, Nizon, Mathilde, Frengen, Eirik, Bowne, Sara J, 99 Lives Consortium, Cadena, Elizabeth L, Daiger, Stephen P, Bujakowska, Kinga M, Pierce, Eric A, Gorin, Michael, Katsanis, Nicholas, Bézieau, Stéphane, Petersen-Jones, Simon M, Occelli, Laurence M, Lyons, Leslie A, Legeai-Mallet, Laurence, Sullivan, Lori S, Davis, Erica E, and Isidor, Bertrand
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Lives Consortium ,Retina ,Cilia ,Animals ,Zebrafish ,Cats ,Humans ,Rhodopsin ,Pedigree ,Amino Acid Sequence ,Larva ,Heterozygote ,Genes ,Dominant ,Phenotype ,Mutation ,Middle Aged ,Child ,Preschool ,Female ,Male ,Photoreceptor Cells ,Genome-Wide Association Study ,Young Adult ,Ciliopathies ,Kinesins ,KIF3B ,feline genetics ,hepatic fibrosis ,kinesin ,primary cilia ,retinopathy ,whole-exome sequencing ,zebrafish ,Neurosciences ,Clinical Research ,Genetics ,Pediatric ,Polycystic Kidney Disease ,Eye Disease and Disorders of Vision ,Congenital Structural Anomalies ,Neurodegenerative ,Kidney Disease ,Rare Diseases ,Aetiology ,2.1 Biological and endogenous factors ,Eye ,Biological Sciences ,Medical and Health Sciences ,Genetics & Heredity - Abstract
Kinesin-2 enables ciliary assembly and maintenance as an anterograde intraflagellar transport (IFT) motor. Molecular motor activity is driven by a heterotrimeric complex comprised of KIF3A and KIF3B or KIF3C plus one non-motor subunit, KIFAP3. Using exome sequencing, we identified heterozygous KIF3B variants in two unrelated families with hallmark ciliopathy phenotypes. In the first family, the proband presents with hepatic fibrosis, retinitis pigmentosa, and postaxial polydactyly; he harbors a de novo c.748G>C (p.Glu250Gln) variant affecting the kinesin motor domain encoded by KIF3B. The second family is a six-generation pedigree affected predominantly by retinitis pigmentosa. Affected individuals carry a heterozygous c.1568T>C (p.Leu523Pro) KIF3B variant segregating in an autosomal-dominant pattern. We observed a significant increase in primary cilia length in vitro in the context of either of the two mutations while variant KIF3B proteins retained stability indistinguishable from wild type. Furthermore, we tested the effects of KIF3B mutant mRNA expression in the developing zebrafish retina. In the presence of either missense variant, rhodopsin was sequestered to the photoreceptor rod inner segment layer with a concomitant increase in photoreceptor cilia length. Notably, impaired rhodopsin trafficking is also characteristic of recessive KIF3B models as exemplified by an early-onset, autosomal-recessive, progressive retinal degeneration in Bengal cats; we identified a c.1000G>A (p.Ala334Thr) KIF3B variant by genome-wide association study and whole-genome sequencing. Together, our genetic, cell-based, and in vivo modeling data delineate an autosomal-dominant syndromic retinal ciliopathy in humans and suggest that multiple KIF3B pathomechanisms can impair kinesin-driven ciliary transport in the photoreceptor.
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- 2020
37. Side-specific, Microultrasound-based Nomogram for the Prediction of Extracapsular Extension in Prostate Cancer
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Pedraza, Adriana M., Parekh, Sneha, Joshi, Himanshu, Grauer, Ralph, Wagaskar, Vinayak, Zuluaga, Laura, Gupta, Raghav, Barthe, Flora, Nasri, Jordan, Pandav, Krunal, Patel, Dhruti, Gorin, Michael A., Menon, Mani, and Tewari, Ashutosh K.
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- 2023
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38. Robot-Assisted Radical Prostatectomy: Development of Nerve-Sparing Techniques at Vattikuti Urology Institute
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Mukkamala, Anudeep, Jeong, Wooju, Gorin, Michael, Menon, Mani, Wiklund, Peter, editor, Mottrie, Alexandre, editor, Gundeti, Mohan S, editor, and Patel, Vipul, editor
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- 2022
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39. Vascular Expression of Prostate-specific Membrane Antigen (PSMA) in MiTF Family Translocation Renal Cell Carcinoma and Related Neoplasms
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Baraban, Ezra G., Ged, Yasser, Singla, Nirmish, Allaf, Mohammad E., Gorin, Michael A., Markowski, Mark C., Rowe, Steven P., and Argani, Pedram
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- 2023
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40. MANAGEMENT OF RETINAL HEMANGIOBLASTOMA IN VON HIPPEL-LINDAU DISEASE.
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Wiley, Henry E, Krivosic, Valerie, Gaudric, Alain, Gorin, Michael B, Shields, Carol, Shields, Jerry, Aronow, Mary E, and Chew, Emily Y
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Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Rare Diseases ,Neurosciences ,Eye Disease and Disorders of Vision ,Eye ,Hemangioblastoma ,Humans ,Retinal Neoplasms ,Retinal Vessels ,von Hippel-Lindau Disease ,pVHL ,retinal capillary hemangioma ,retinal capillary hemangioblastoma ,retinal hemangioblastoma ,retinal hemangioma ,retinal vascular proliferation ,von Hippel-Lindau disease ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
PurposeTo review the current state of diagnosis and management of retinal hemangioblastoma and retinal vascular proliferation arising from von Hippel-Lindau (VHL) disease.MethodsA review of the literature was performed. Consensus was reached among authors regarding current practice, with reference to published data where possible.Resultsvon Hippel-Lindau disease and its ocular manifestations are relatively rare, and there is limited evidence in the literature on which to base management. There was consensus on core principles, including 1) recognition and diagnosis of von Hippel-Lindau disease when present, with appropriate referral for care of this potentially lethal systemic condition; 2) regular ophthalmic evaluation for individuals with von Hippel-Lindau disease, to identify and offer timely treatment for new or active retinal hemangioblastomas; 3) ablative treatment of retinal hemangioblastomas that can be safely destroyed, to lower risk of vision loss; 4) observation or consideration of nonablative treatments for retinal hemangioblastomas that cannot be safely destroyed; and 5) observation of asymptomatic retinal vascular proliferation, with consideration of vitrectomy for lesions exerting effects on vision.ConclusionOcular outcomes can be gratifying in many cases with appropriate management. Improved understanding of the molecular basis for the disease creates an opportunity for rational design of better therapies.
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- 2019
41. Missense variants in the conserved transmembrane M2 protein domain of KCNJ13 associated with retinovascular changes in humans and zebrafish
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Toms, Maria, Dubis, Adam M, Lim, Wei Sing, Webster, Andrew R, Gorin, Michael B, and Moosajee, Mariya
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Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Rare Diseases ,Eye Disease and Disorders of Vision ,Neurosciences ,Neurodegenerative ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Eye ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Animals ,Child ,DNA ,DNA Mutational Analysis ,Disease Models ,Animal ,Female ,Fluorescein Angiography ,Fundus Oculi ,Humans ,Leber Congenital Amaurosis ,Male ,Middle Aged ,Mutation ,Missense ,Pedigree ,Phenotype ,Potassium Channels ,Inwardly Rectifying ,Protein Domains ,Retina ,Retinal Degeneration ,Tomography ,Optical Coherence ,Young Adult ,Zebrafish ,Medical Biochemistry and Metabolomics ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
Mutations in KCNJ13 are associated with two retinal disorders; Leber congenital amaurosis (LCA) and snowflake vitreoretinal degeneration (SVD). We describe a novel fibrovascular proliferation in the retina of two affected members of a KCNJ13-related LCA family with a homozygous c.458C > T, p.(Thr153Ile) missense mutation. Optical coherence tomography retinal imaging of the kcnj13 mutant zebrafish (obelixtd15 c.502T > C, p.[Phe168Leu]) revealed a late onset retinal degeneration at 12 months, with retinal thinning and associated retinovascular changes, including increased vessel calibre and vitreous deposits. Both human and zebrafish variants are missense and located within the conserved transmembrane M2 protein domain, suggesting that disruption of this region may contribute to retinovascular changes as an additional feature to the previously described LCA phenotype. Close monitoring of other patients with similar mutations may be required to minimise the ensuing retinal damage.
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- 2019
42. A systems biology approach towards understanding and treating non-neovascular age-related macular degeneration.
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Handa, James T, Bowes Rickman, Cathy, Dick, Andrew D, Gorin, Michael B, Miller, Joan W, Toth, Cynthia A, Ueffing, Marius, Zarbin, Marco, and Farrer, Lindsay A
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Animals ,Humans ,Macular Degeneration ,Systems Biology ,Oxidative Stress - Abstract
Age-related macular degeneration (AMD) is the most common cause of blindness among the elderly in the developed world. While treatment is effective for the neovascular or "wet" form of AMD, no therapy is successful for the non-neovascular or "dry" form. Here we discuss the current knowledge on dry AMD pathobiology and propose future research directions that would expedite the development of new treatments. In our view, these should emphasize system biology approaches that integrate omic, pharmacological, and clinical data into mathematical models that can predict disease onset and progression, identify biomarkers, establish disease causing mechanisms, and monitor response to therapy.
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- 2019
43. Macular spatial distribution of preserved autofluorescence in patients with choroideremia
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Hariri, Amir H, Ip, Michael S, Girach, Aniz, Lam, Byron L, Fischer, M Dominik, Sankila, Eeva-Marja, Pennesi, Mark Edward, Holz, Frank G, Maclaren, Robert E, Birch, David G, Hoyng, Carel B, MacDonald, Ian M, Black, Graeme C, Tsang, Stephen H, Bressler, Neil M, Stepien, Kimberly E, Larsen, Michael, Gorin, Michael B, Meunier, Isabelle, Webster, Andrew R, and Sadda, SriniVas
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Neurodegenerative ,Clinical Research ,Choroideremia ,Fluorescein Angiography ,Fovea Centralis ,Fundus Oculi ,Humans ,Multimodal Imaging ,Retinal Pigment Epithelium ,Tomography ,Optical Coherence ,Visual Acuity ,choroideremia ,optical coherence tomography ,fundus autofluorescence ,preserved autofluorescence ,ellipsoid zone ,retinal pigment epithelium ,For Natural History of the Progression of Choroideremia (NIGHT) Study Group ,Clinical Sciences ,Opthalmology and Optometry ,Public Health and Health Services ,Ophthalmology & Optometry - Abstract
Background/aimsTo better understand the pattern of degeneration progression in cases with choroideremia.MethodsA cohort of genotypically confirmed choroideremia cases who underwent optical coherence tomography (OCT) and fundus autofluorescence (FAF) imaging was studied. Using HEYEX review software, the foveal centre was marked on FAF images under guidance of corresponding OCT images, followed by application of an ETDRS grid. The boundaries of preserved autofluorescence (AF) were manually segmented in each individual ETDRS subfield. The regional distribution of preserved AF was assessed by comparing its area among the various subfields.ResultsA total of 168 eyes from 84 choroideremia cases were enrolled. There was a statistically significant difference in the amount of preserved AF area between inner subfields as determined by one-way analysis of variance (F (3,668)=9.997, p
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- 2019
44. Three patients with injection of intravitreal vascular endothelial growth factor inhibitors and subsequent exacerbation of chronic proteinuria and hypertension.
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Hanna, Ramy M, Lopez, Eduardo A, Hasnain, Huma, Selamet, Umut, Wilson, James, Youssef, Peter N, Akladeous, Nermeen, Bunnapradist, Suphamai, and Gorin, Michael B
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VEGF ,angiogenesis ,diabetes mellitus ,diabetic nephropathy ,hypertension ,proteinuria - Abstract
Vascular endothelial growth factor (VEGF) receptor inhibition is a commonly used tool to prevent vascular proliferation in tumors and retinal diseases. The antiangiogenic effects of these drugs have made them potent adjunct therapies when given systemically for malignancies. They are also useful tools to ameliorate diminishing eyesight in retinopathy. Hypertension and proteinuria have been observed in systemic VEGF inhibitor therapy, with rarer presentations involving nephrotic-range proteinuria due to glomerulopathies. Pharmacokinetic studies have shown detectable blood levels of anti-VEGF inhibitors up to 30 days postintravitreal injection. Animal studies have also demonstrated binding of VEGF inhibitors in simian glomeruli 1 week after a single intravitreal injection. We report three patients who received intravitreal bevacizumab and/or aflibercept with worsening hypertension, proteinuria and renal injury. Data regarding emerging evidence of VEGF inhibitor nephrotoxicity after intravitreal injections are also presented. The clinical data and the existing literature are reviewed to support the hypothesis that intravitreal anti-VEGF agents may be unrecognized nephrotoxins. These agents are given to vulnerable patients with diabetes, hypertension and preexisting nephropathy and proteinuria. This case series is reported to spur further study of the systemic effects of intravitreal VEGF inhibitors.
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- 2019
45. Remote surgical education using synthetic models combined with an augmented reality headset
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Stone, Nelson N., Wilson, Michael P., Griffith, Steven H., Immerzeel, Jos, Debruyne, Frans, Gorin, Michael A., Brisbane, Wayne, Orio, Peter F., Kim, Laura S., and Stone, Jonathan J.
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- 2022
- Full Text
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46. 18F-Labeled Radiotracers for Prostate-specific Membrane Antigen: Historical Perspective and Future Directions
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Rowe, Steven P., Salavati, Ali, Werner, Rudolf A., Pienta, Kenneth J., Gorin, Michael A., Pomper, Martin G., and Solnes, Lilja B.
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- 2022
- Full Text
- View/download PDF
47. The Mount Sinai Prebiopsy Risk Calculator for Predicting any Prostate Cancer and Clinically Significant Prostate Cancer: Development of a Risk Predictive Tool and Validation with Advanced Neural Networking, Prostate Magnetic Resonance Imaging Outcome Database, and European Randomized Study of Screening for Prostate Cancer Risk Calculator
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Parekh, Sneha, Ratnani, Parita, Falagario, Ugo, Lundon, Dara, Kewlani, Deepshikha, Nasri, Jordan, Dovey, Zach, Stroumbakis, Dimitrios, Ranti, Daniel, Grauer, Ralph, Sobotka, Stanislaw, Pedraza, Adriana, Wagaskar, Vinayak, Mistry, Lajja, Jambor, Ivan, Lantz, Anna, Ettala, Otto, Stabile, Armando, Taimen, Pekka, Aronen, Hannu J., Knaapila, Juha, Perez, Ileana Montoya, Gandaglia, Giorgio, Martini, Alberto, Picker, Wolfgang, Haug, Erik, Cormio, Luigi, Nordström, Tobias, Briganti, Alberto, Boström, Peter J., Carrieri, Giuseppe, Haines, Kenneth, Gorin, Michael A., Wiklund, Peter, Menon, Mani, and Tewari, Ash
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- 2022
- Full Text
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48. Novel Imaging Methods for Renal Mass Characterization: A Collaborative Review
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Roussel, Eduard, Capitanio, Umberto, Kutikov, Alexander, Oosterwijk, Egbert, Pedrosa, Ivan, Rowe, Steven P., and Gorin, Michael A.
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- 2022
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49. Pediatric patients with von Hippel–Lindau and hemangioblastomas treated successfully with belzutifan.
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Duan, Emily, Robinson, Michael, Davis, Charles, Pruthi, Sumit, Shin, Christina, Lewis, Marisa, Martinez‐Agosto, Julian A., Gorin, Michael B., Shuch, Brian M., Friedman, Debra L., and Chang, Vivian Y.
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- 2025
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50. Description of Surgical Technique and Oncologic and Functional Outcomes of the Precision Prostatectomy Procedure (IDEAL Stage 1–2b Study)
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Sood, Akshay, Jeong, Wooju, Palma-Zamora, Isaac, Abdollah, Firas, Butaney, Mohit, Corsi, Nicholas, Wurst, Hallie, Arora, Sohrab, Kachroo, Naveen, Hassan, Oudai, Gupta, Nilesh, Gorin, Michael A., and Menon, Mani
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- 2022
- Full Text
- View/download PDF
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