12,920 results on '"Guang Yang"'
Search Results
2. PharmaBench: Enhancing ADMET benchmarks with large language models
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Zhangming Niu, Xianglu Xiao, Wenfan Wu, Qiwei Cai, Yinghui Jiang, Wangzhen Jin, Minhao Wang, Guojian Yang, Lingkang Kong, Xurui Jin, Guang Yang, and Hongming Chen
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Science - Abstract
Abstract Accurately predicting ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) properties early in drug development is essential for selecting compounds with optimal pharmacokinetics and minimal toxicity. Existing ADMET-related benchmark sets are limited in utility due to their small dataset sizes and the lack of representation of compounds used in drug discovery projects. These shortcomings hinder their application in model building for drug discovery. To address this issue, we propose a multi-agent data mining system based on Large Language Models that effectively identifies experimental conditions within 14,401 bioassays. This approach facilitates merging entries from different sources, culminating in the creation of PharmaBench. Additionally, we have developed a data processing workflow to integrate data from various sources, resulting in 156,618 raw entries. Through this workflow, we constructed PharmaBench, a comprehensive benchmark set for ADMET properties, which comprises eleven ADMET datasets and 52,482 entries. This benchmark set is designed to serve as an open-source dataset for the development of AI models relevant to drug discovery projects.
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- 2024
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3. HDAC/H3K27ac-mediated transcription of NDUFA3 exerts protective effects on high glucose-treated human nucleus pulposus cells through improving mitochondrial function
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Cheng Zheng, Dongshuai Guo, Tong Zhang, Weiran Hu, Bo Zhang, Hang Feng, Yanzheng Gao, and Guang Yang
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Mitochondrial complex I ,Mitochondrial function ,ROS ,Oxidative phosphorylation ,Intervertebral disc degeneration ,Medicine ,Science - Abstract
Abstract Diabetes mellitus (DM) is a well-documented risk factor of intervertebral disc degeneration (IVDD). The current study was aimed to clarify the effects and mechanisms of NADH: ubiquinone oxidoreductase subunit A3 (NDUFA3) in human nucleus pulposus cells (HNPCs) exposed to high glucose. NDUFA3 was overexpressed in HNPCs via lenti-virus transduction, which were co-treated with high glucose and rotenone (a mitochondrial complex I inhibitor) for 48 h. Cell activities were assessed for cell viability, cell apoptosis, reactive oxygen species (ROS) production, mitochondrial membrane potential (MMP) ratio, oxygen consumption rate (OCR) and mitochondrial complexes I activities. High glucose decreased cell viability, increased apoptotic cells, increased ROS production, decreased MMP levels and OCR values in HNPCs in a dose-dependent manner. Rotenone co-treatment augmented the high glucose-induced injuries on cell viability, apoptosis, ROS production and mitochondrial function. NDUFA3 overexpression counteracted the high glucose-induced injuries in HNPCs. HDAC/H3K27ac mechanism was involved in regulating NDUFA3 transcription. NDUFA3 knockdown decreased cell viability and increased apoptotic cells, which were reversed by ROS scavenger N-acetylcysteine. HDAC/H3K27ac-mediated transcription of NDUFA3 protects HNPCs against high glucose-induced injuries through suppressing cell apoptosis, eliminating ROS, improving mitochondrial function and oxidative phosphorylation. This study sheds light on candidate therapeutic targets and deepens the understanding of molecular mechanisms behind DM-induced IVDD.
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- 2024
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4. Promoting Proliferation of Streptococcus thermophilus FUA329 and Antioxidant Activity of Enzyme Hydrolysis Products of Larimichthys polyactis
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Xiaoyue LU, Ziyan HUA, Qing WU, Hao WU, Shu LIU, Guang YANG, Xiaoyue HOU, and Yaowei FANG
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larimichthys polyactis ,streptococcus thermophilus ,promotion of proliferation ,protease hydrolysis ,enzymatic process optimization ,antioxidant activity ,Food processing and manufacture ,TP368-456 - Abstract
To determine the promoting effects of enzyme hydrolysis products of Larimichthys polyactis on the proliferation of Streptococcus thermophilus FUA329. The in vitro antioxidant activity of the enzymatic hydrolysis with different molecular weights were determined. Papain was selected for the enzymatic hydrolysis of its by-products on the basis of selecting different enzymes to hydrolyze the processing by-products of Larimichthys polyactis. Taking the proliferative effect of enzymatic degradation products on Streptococcus thermophilus as an indicator of evaluation. The enzymatic hydrolysis conditions were optimized through single factor and response surface methodology. The in vitro antioxidant activity of the hydrolysis products of the by-products of Larimichthys polyactis (HPBL) were determined. The results showed that the best enzymatic hydrolysis conditions included the hydrolysis time, material-liquid ratio and enzyme loading were 5 h, 1:5.1 (w/v) and 2.8% (w/v), respectively. The HPBL prepared under the optimized conditions was separated by ultrafiltration into four fragments, according to the molecular weight: >10000 Da, 5000~10000 Da, 3000~5000 Da,
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- 2024
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5. Molecular glue triggers degradation of PHGDH by enhancing the interaction between DDB1 and PHGDH
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Ziqi Huang, Kun Zhang, Yurui Jiang, Mengmeng Wang, Mei Li, Yuda Guo, Ruolin Gao, Ning Li, Chenyang Wang, Jia Chen, Jiefu Wang, Ning Liu, Xiang Liu, Shuangwei Liu, Mingming Wei, Cheng Yang, and Guang Yang
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Molecular glue ,Targeted protein degradation ,PHGDH ,Cancer stem cells ,PROTACs ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Cancer stem cells (CSCs) play a pivotal role in tumor initiation, proliferation, metastasis, drug resistance, and recurrence. Consequently, targeting CSCs has emerged as a promising avenue for cancer therapy. Recently, 3-phosphoglycerate dehydrogenase (PHGDH) has been identified as being intricately associated with the regulation of numerous cancer stem cells. Yet, reports detailing the functional regulators of PHGDH that can mitigate the stemness across cancer types are limited. In this study, the novel “molecular glue” LXH-3-71 was identified, and it robustly induced degradation of PHGDH, thereby modulating the stemness of colorectal cancer cells (CRCs) both in vitro and in vivo. Remarkably, LXH-3-71 was observed to form a dynamic chimera, between PHGDH and the DDB1-CRL E3 ligase. These insights not only elucidate the anti-CSCs mechanism of the lead compound but also suggest that degradation of PHGDH may be a more viable therapeutic strategy than the development of PHGDH inhibitors. Additionally, compound LXH-3-71 was leveraged as a novel ligand for the DDB1-CRL E3 ligase, facilitating the development of new PROTAC molecules targeting EGFR and CDK4 degradation.
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- 2024
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6. A method for miRNA diffusion association prediction using machine learning decoding of multi-level heterogeneous graph Transformer encoded representations
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SiJian Wen, YinBo Liu, Guang Yang, WenXi Chen, HaiTao Wu, XiaoLei Zhu, and YongMei Wang
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MiRNA-disease association prediction ,Multi-view similarity networks ,Multi-layer heterogeneous encoder ,XGBoost decoder ,Medicine ,Science - Abstract
Abstract MicroRNAs (miRNAs) are a key class of endogenous non-coding RNAs that play a pivotal role in regulating diseases. Accurately predicting the intricate relationships between miRNAs and diseases carries profound implications for disease diagnosis, treatment, and prevention. However, these prediction tasks are highly challenging due to the complexity of the underlying relationships. While numerous effective prediction models exist for validating these associations, they often encounter information distortion due to limitations in efficiently retaining information during the encoding-decoding process. Inspired by Multi-layer Heterogeneous Graph Transformer and Machine Learning XGboost classifier algorithm, this study introduces a novel computational approach based on multi-layer heterogeneous encoder—machine learning decoder structure for miRNA-disease association prediction (MHXGMDA). First, we employ the multi-view similarity matrices as the input coding for MHXGMDA. Subsequently, we utilize the multi-layer heterogeneous encoder to capture the embeddings of miRNAs and diseases, aiming to capture the maximum amount of relevant features. Finally, the information from all layers is concatenated to serve as input to the machine learning classifier, ensuring maximal preservation of encoding details. We conducted a comprehensive comparison of seven different classifier models and ultimately selected the XGBoost algorithm as the decoder. This algorithm leverages miRNA embedding features and disease embedding features to decode and predict the association scores between miRNAs and diseases. We applied MHXGMDA to predict human miRNA-disease associations on two benchmark datasets. Experimental findings demonstrate that our approach surpasses several leading methods in terms of both the area under the receiver operating characteristic curve and the area under the precision-recall curve.
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- 2024
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7. CCL5 promotes the epithelial-mesenchymal transition of circulating tumor cells in renal cancer
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Yibing Guan, Xueyi Liu, Juanhua Tian, Guang Yang, Fangshi Xu, Ni Guo, Lingyu Guo, Ziyan Wan, Zhixin Huang, Mei Gao, and Tie Chong
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CCL5 ,CTCs ,Renal cancer ,EMT ,Prognosis ,Medicine - Abstract
Abstract Background Circulating tumor cells (CTCs) are pivotal in tumor metastasis across cancers, yet their specific role in renal cancer remains unclear. Methods This study investigated C–C motif chemokine ligand 5 (CCL5)'s tumorigenic impact on renal cancer cells and CTCs using bioinformatics, in vivo, and in vitro experiments. It also assessed renal cancer patients' CTCs prognostic value through Lasso regression and Kaplan–Meier survival curves. Results Bioinformatics analysis revealed differential genes focusing on cellular adhesion and migration between CTCs and tumor cells. CCL5 exhibited high expression in various CTCs, correlating with poor prognosis in renal cancer. In 786-O-CTCs, CCL5 enhanced malignancy, while in renal cell carcinoma cell line CAKI-2 and 786-O, it promoted epithelial-mesenchymal transition (EMT) via smad2/3, influencing cellular characteristics. The nude mouse model suggested CCL5 increased CTCs and intensified EMT, enhancing lung metastasis. Clinical results shown varying prognostic values for different EMT-typed CTCs, with mesenchymal CTCs having the highest value. Conclusions In summary, CCL5 promoted EMT in renal cancer cells and CTCs through smad2/3, enhancing the malignant phenotype and facilitating lung metastasis. Mesenchymal-type CTC-related factors can construct a risk model for renal cancer patients, allowing personalized treatment based on metastatic risk prediction.
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- 2024
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8. From labour support to design support: transition of China’s foreign aid stadiums from the 1950s to the 1970s
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Wei Chang, Yifan Gao, Guang Yang, Xiaofeng Guo, and Xue Charlie Q.L.
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china’s foreign aid stadiums ,design support ,1950s to 1970s ,Architecture ,NA1-9428 ,Building construction ,TH1-9745 - Abstract
From the 1950s to the 1970s, China exported 16 foreign aid stadiums, which occupied a considerable proportion of China’s foreign aid construction and stood out due to their unique qualities. This study aims to explore the historical development of these stadiums in the initial period to clarify the development trends of early China’s stadium aid and the main factors influencing it. According to an exploration based on a series of historical studies, qualitative comparative analyses, interviews and case studies, this study reveals that China’s foreign stadium aid transitioned from labour support to design support under the influence of governmental, architectural and additional factors. This study fills a gap in the academic literature, provides new perspectives for current research into China’s foreign aid construction, and provides indispensable supplements for Chinese sports architecture and modern architecture.
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- 2024
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9. A veracity dissemination consistency-based few-shot fake news detection framework by synergizing adversarial and contrastive self-supervised learning
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Weiqiang Jin, Ningwei Wang, Tao Tao, Bohang Shi, Haixia Bi, Biao Zhao, Hao Wu, Haibin Duan, and Guang Yang
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Few-shot fake news detection ,LM-based pseudo prompt-tuning ,Contrastive learning ,Adversarial learning ,News veracity dissemination consistency ,Medicine ,Science - Abstract
Abstract With the rapid growth of social media, fake news (rumors) are rampant online, seriously endangering the health of mainstream social consciousness. Fake news detection (FEND), as a machine learning solution for automatically identifying fake news on Internet, is increasingly gaining the attentions of academic community and researchers. Recently, the mainstream FEND approaches relying on deep learning primarily involves fully supervised fine-tuning paradigms based on pre-trained language models (PLMs), relying on large annotated datasets. In many real scenarios, obtaining high-quality annotated corpora are time-consuming, expertise-required, labor-intensive, and expensive, which presents challenges in obtaining a competitive automatic rumor detection system. Therefore, developing and enhancing FEND towards data-scarce scenarios is becoming increasingly essential. In this work, inspired by the superiority of semi-/self- supervised learning, we propose a novel few-shot rumor detection framework based on semi-supervised adversarial learning and self-supervised contrastive learning, named Detection Yet See Few (DetectYSF). DetectYSF synergizes contrastive self-supervised learning and adversarial semi-supervised learning to achieve accurate and efficient FEND capabilities with limited supervised data. DetectYSF uses Transformer-based PLMs (e.g., BERT, RoBERTa) as its backbone and employs a Masked LM-based pseudo prompt learning paradigm for model tuning (prompt-tuning). Specifically, during DetectYSF training, the enhancement measures for DetectYSF are as follows: (1) We design a simple but efficient self-supervised contrastive learning strategy to optimize sentence-level semantic embedding representations obtained from PLMs; (2) We construct a Generation Adversarial Network (GAN), utilizing random noises and negative fake news samples as inputs, and employing Multi-Layer Perceptrons (MLPs) and an extra independent PLM encoder to generate abundant adversarial embeddings. Then, incorporated with the adversarial embeddings, we utilize semi-supervised adversarial learning to further optimize the output embeddings of DetectYSF during its prompt-tuning procedure. From the news veracity dissemination perspective, we found that the authenticity of the news shared by these collectives tends to remain consistent, either mostly genuine or predominantly fake, a theory we refer to as “news veracity dissemination consistency”. By employing an adjacent sub-graph feature aggregation algorithm, we infuse the authenticity characteristics from neighboring news nodes of the constructed veracity dissemination network during DetectYSF inference. It integrates the external supervisory signals from “news veracity dissemination consistency” to further refine the news authenticity detection results of PLM prompt-tuning, thereby enhancing the accuracy of fake news detection. Furthermore, extensive baseline comparisons and ablated experiments on three widely-used benchmarks demonstrate the effectiveness and superiority of DetectYSF for few-shot fake new detection under low-resource scenarios.
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- 2024
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10. Technological Mineralogical Characteristics and Mineral Processing Test of Donganshan Iron Ore
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Shuyong LIU, Guang YANG, Libin YUAN, Shushuang CONG, Jiangning ZHANG, and Zhanliang NIU
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mineral processing engineering ,donganshan iron ore ,process mineralogy ,comprehensive ore blending ,magnetic separation ,anion reverse flotation ,Mining engineering. Metallurgy ,TN1-997 - Abstract
This is an article in the field of mineral processing engineering. In order to accurately grasp the influence of various types of ores on field production, the process mineralogy of various types of ores was systematically and deeply studied by means of chemical analysis and automatic mineral analysis system (AMICS). Based on the process mineralogy, the ore blending scheme was drawn up, and the whole process test was carried out according to the optimal ore blending ratio. The results show that all kinds of ores are lean iron ores with high silicon, low iron and low sulfur and phosphorus. The embedding characteristics of various types of ores are complex, which has a certain influence on the grindability of ores and monomer dissociation. According to the washability test results of various types of ores in the mining area, the comprehensive ore blending ratio is determined as follows: (magnetic ore∶ sub-iron ore∶ eastern red ore∶mixed ore∶ chlorite ore∶ iron carbonate ore) =(25∶25∶25∶10∶10∶5). Through the closed-circuit process of weak magnetic field-strong magnetic field-mixed magnetic fine anion reverse flotation, the comprehensive ore blending obtained good indexes of comprehensive concentrate grade of 66.06%, yield of 34.60%, comprehensive tailings grade of 15.20% and yield of 65.40%.
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- 2024
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11. Exhaustive clinical examination of etiology and initial response to first‐line treatment in 577 children with infantile epileptic spasm syndrome children: A 5‐year retrospective observational study
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Lin Wan, Wenrong Ge, Guoyin Liu, Wen He, Yan Liang, Shuo Dun, Huimin Yan, Jian Chen, Gang Zhu, Jing Gao, Xiuyu Shi, Jing Wang, Linyan Hu, Bo Zhang, Liping Zou, and Guang Yang
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Objective Employing whole‐exome sequencing (WES) technology to investigate the etiology of infantile epileptic spasm syndrome (IESS), and determining whether different etiologies exhibit phenotypic variations, while elucidating the potential associated factors, might improve short‐term responses to first‐line treatment. Methods We retrospectively evaluated patients with IESS admitted for treatment between January 2018 and June 2023. Clinical phenotypic differences among etiological classifications and clinical manifestations were analyzed. Variable selection using the best subset method was performed, followed by logistic regression analysis to identify the factors influencing treatment response. Results A total of 577 patients were included; 412 completed trio‐WES. Magnetic resonance imaging abnormalities were detected in 387 patients (67.1%). Patients with etiology as structural abnormalities were likelier to have non‐spasms at the initial seizure onset. A total of 532 patients completed the first‐line treatment; 273 patients received it for the first time at our hospital (initial response rates: 30.1% and 42.1%, respectively). The response group had a lower proportion of early‐onset seizures (≤3 months) than the no‐response group (11.3% vs. 23.7%, p
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- 2024
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12. Clinical application research of intelligent monitoring system for knee rehabilitation: a randomized controlled trial
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Wenqing Xie, Miao He, Shengyuan Zheng, Hengzhen Li, Hongfu Jin, Bingzhou Ji, Guang Yang, and Yusheng Li
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Intelligent Monitoring System ,Total knee arthroplasty ,Range of Motion ,Isometric knee extensor strength ,Quality of life ,Orthopedic surgery ,RD701-811 ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background This study investigates the effectiveness of a self-developed intelligent monitoring system for home-based knee rehabilitation following total knee arthroplasty (TKA). Methods In this randomized controlled trial, 120 patients undergoing TKA were divided using random digit allocation. Preoperative and one-month postoperative assessments of knee function, quality of life, and isometric knee extension strength were conducted with the Intelligent Monitoring System. Patients received group-specific rehabilitation instructions pre-discharge and performed exercises for one month. Results Changes in isometric knee extensor strength on the affected side within one month post-surgery for the brace-monitored rehabilitation group showed a significant decrease three days after surgery compared to one day before surgery. Subsequent measurements taken at postoperative days 5, 7, 14, and 21 indicated a gradual increase in strength, although these increases did not reach statistical significance when compared with previous measurements. One month post-surgery, all groups demonstrated significant improvements in knee joint function and mobility compared to pre-surgery levels. Notably, the brace-monitored group showed statistically significant improvements in 36-Item Short-Form Health Survey (SF-36) scores over the conventional rehabilitation group. Conclusions The Intelligent Monitoring System provides effective real-time monitoring and guidance for home-based knee rehabilitation post-TKA. It significantly enhances knee joint function, isometric knee extension strength, and quality of life shortly after surgery compared to traditional rehabilitation methods. This system offers a promising approach for improving postoperative recovery in TKA patients. Trial registration This study was approved by the Medical Ethics Committee of Xiangya Hospital, Central South University (Ethics Approval Number 202209008-2). It was registered with the China Clinical Trial Registry, a primary registry of the World Health Organization’s International Clinical Trials Registry Platform (Registration Number ChiCTR2300068852).
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- 2024
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13. Recent warming of the Kuroshio Current has promoted offshore sediment transport in the Yellow Sea
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Yong Shi, Xiaomei Xu, Tao Liu, Guang Yang, Shengjing Liu, Jixuan Lyu, Shuo Zhang, Hui Sheng, and Jianhua Gao
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Oceanography ,GC1-1581 - Abstract
Abstract As cross‐shelf gradients of most properties are typically much steeper than those in the alongshore direction, transport across isobaths tends to be inhibited, particularly at oceanic fronts where cross‐shelf gradients are markedly pronounced. Consequently, variations in cross‐shelf gradients may exert a significant influence on offshore transport; however, this influence is not yet well understood. This study employs reconstructed daily suspended sediment concentration (SSC) data from the Yellow Sea's offshore region to investigate the dynamics of offshore transport. Our analysis on an interannual scale shows that offshore SSC correlates more with temperature gradients at the oceanic front than with winter storms, despite the latter's vital role in causing frontal instability. The observed increase in offshore transport over the past two decades is likely connected to Kuroshio Current warming, which has strengthened the horizontal density gradient at the oceanic front, driving the strengthened offshore transport of coastal sediments during instability episodes.
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- 2024
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14. The first complete mitochondrial genome of Grossulariaceae: Molecular features, structure recombination, and genetic evolution
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Guilong Lu, Wenhua Wang, Shanshan Zhang, Guang Yang, Kun Zhang, Youxiong Que, and Lan Deng
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Ribes nigrum ,Mitogenome ,Molecular feature ,Gene transfer ,Evolution analysis ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Mitochondria play crucial roles in the growth, development, and adaptation of plants. Blackcurrant (Ribes nigrum L.) stands out as a significant berry species due to its rich nutritional profile, medicinal properties, and health benefits. Despite its importance, the mitochondrial genome of blackcurrant remains unassembled. Results This study presents the first assembly of the mitochondrial genome of R. nigrum in the Grossulariaceae family. The genome spans 450,227 base pairs (bp) and encompasses 39 protein-coding genes (PCGs), 19 transfer RNAs (tRNAs), and three ribosomal RNAs (rRNAs). Protein-coding regions constitute 8.88% of the entire genome. Additionally, we identified 180 simple sequence repeats, 12 tandem repeats, and 432 pairs of dispersed repeats. Notably, the dispersed sequence R1 (cotig3, 1,129 bp) mediated genome recombination, resulting in the formation of two major conformations, namely master and double circles. Furthermore, we identified 731 C-to-U RNA editing sites within the PCGs. Among these, cox1-2, nad1-2, and nad4L-2 were associated with the creation of start codons, whereas atp6-718 and rps10-391 were linked to termination codons. We also detected fourteen plastome fragments within the mitogenome, constituting 1.11% of the total length. Phylogenetic analysis suggests that R. nigrum might have undergone multiple genomic reorganization and/or gene transfer events, resulting in the loss of two PCGs (rps2 and rps11) during its evolutionary history. Conclusions This investigation unveils the molecular characteristics of the R. nigrum mitogenome, shedding light on its evolutionary trajectory and phylogenetic implications. Furthermore, it serves as a valuable reference for evolutionary research and germplasm identification within the genus.
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- 2024
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15. Manipulating the crystallization kinetics of halide perovskites for large-area solar modules
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Zhaojin Wang, Xiao Duan, Jing Zhang, Wenbin Yuan, Dinghao Qu, You Chen, Lijuan He, Haoran Wang, Guang Yang, Wei Zhang, Yang Bai, and Hui-Ming Cheng
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Abstract In the last decade, laboratory-scale single-junction perovskite solar cells have achieved a remarkable power conversion efficiency exceeding 26.1%. However, the transition to industrial-scale production has unveiled a significant efficiency gap. The central challenge lies in the difficulty of achieving uniform, high-quality perovskite films on a large scale. To tackle this issue, various innovative strategies for manipulating crystallization have emerged in recent years. Based on an in-depth fundamental understanding of the nucleation and growth mechanisms in large-area perovskite films prepared through blade/slot-die coating methods, this review offers a critical examination of crystallization manipulation strategies for large-area perovskite solar modules. Lastly, we explore future avenues aimed at enhancing the efficiency and stability of large-area PSMs, thereby steering the field toward commercially viable applications.
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- 2024
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16. Specific glycine-dependent enzyme motion determines the potency of conformation selective inhibitors of threonyl-tRNA synthetase
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Hang Qiao, Zilu Wang, Hao Yang, Mingyu Xia, Guang Yang, Fang Bai, Jing Wang, and Pengfei Fang
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Biology (General) ,QH301-705.5 - Abstract
Abstract The function of proteins depends on their correct structure and proper dynamics. Understanding the dynamics of target proteins facilitates drug design and development. However, dynamic information is often hidden in the spatial structure of proteins. It is important but difficult to identify the specific residues that play a decisive role in protein dynamics. Here, we report that a critical glycine residue (Gly463) dominates the motion of threonyl-tRNA synthetase (ThrRS) and the sensitivity of the enzyme to antibiotics. Obafluorin (OB), a natural antibiotic, is a novel covalent inhibitor of ThrRS. The binding of OB induces a large conformational change in ThrRS. Through five crystal structures, biochemical and biophysical analyses, and computational simulations, we found that Gly463 plays an important role in the dynamics of ThrRS. Mutating this flexible residue into more rigid residues did not damage the enzyme’s three-dimensional structure but significantly improved the thermal stability of the enzyme and suppressed its ability to change conformation. These mutations cause resistance of ThrRS to antibiotics that are conformationally selective, such as OB and borrelidin. This work not only elucidates the molecular mechanism of the self-resistance of OB-producing Pseudomonas fluorescens but also emphasizes the importance of backbone kinetics for aminoacyl-tRNA synthetase-targeting drug development.
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- 2024
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17. Overcoming big bottlenecks in vascular regeneration
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Dalia A. Fantini, Guang Yang, Astha Khanna, Divya Subramanian, Julie A. Phillippi, and Ngan F. Huang
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Biology (General) ,QH301-705.5 - Abstract
Abstract Bioengineering and regenerative medicine strategies are promising for the treatment of vascular diseases. However, current limitations inhibit the ability of these approaches to be translated to clinical practice. Here we summarize some of the big bottlenecks that inhibit vascular regeneration in the disease applications of aortic aneurysms, stroke, and peripheral artery disease. We also describe the bottlenecks preventing three-dimensional bioprinting of vascular networks for tissue engineering applications. Finally, we describe emerging technologies and opportunities to overcome these challenges to advance vascular regeneration.
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- 2024
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18. Therapeutic potential of the secreted Kazal-type serine protease inhibitor SPINK4 in colitis
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Ying Wang, Jing Han, Guang Yang, Shuhui Zheng, Gaoshi Zhou, Xinjuan Liu, Xiaocang Cao, Guang Li, Bowen Zhang, Zhuo Xie, Li Li, Mudan Zhang, Xiaoling Li, Minhu Chen, and Shenghong Zhang
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Science - Abstract
Abstract Mucus injury associated with goblet cell (GC) depletion constitutes an early event in inflammatory bowel disease (IBD). Using single-cell sequencing to detect critical events in mucus dysfunction, we discover that the Kazal-type serine protease inhibitor SPINK4 is dynamically regulated in colitic intestine in parallel with disease activities. Under chemically induced colitic conditions, the grim status in Spink4-conditional knockout mice is successfully rescued by recombinant murine SPINK4. Notably, its therapeutic potential is synergistic with existing TNF-α inhibitor infliximab in colitis treatment. Mechanistically, SPINK4 promotes GC differentiation using a Kazal-like motif to modulate EGFR-Wnt/β-catenin and -Hippo pathways. Microbiota-derived diacylated lipoprotein Pam2CSK4 triggers SPINK4 production. We also show that monitoring SPINK4 in circulation is a reliable noninvasive technique to distinguish IBD patients from healthy controls and assess disease activity. Thus, SPINK4 serves as a serologic biomarker of IBD and has therapeutic potential for colitis via intrinsic EGFR activation in intestinal homeostasis.
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- 2024
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19. Proposal and validation of a new approach in tele-rehabilitation with 3D human posture estimation: a randomized controlled trial in older individuals with sarcopenia
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Shichun He, Deyu Meng, Meiqi Wei, Hongzhi Guo, Guang Yang, and Ziheng Wang
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sarcopenia ,Remote rehabilitation ,Human pose estimation technology ,Tai chi ,Geriatrics ,RC952-954.6 - Abstract
Abstract Objective Through a randomized controlled trial on older adults with sarcopenia, this study compared the training effects of an AI-based remote training group using deep learning-based 3D human pose estimation technology with those of a face-to-face traditional training group and a general remote training group. Methods Seventy five older adults with sarcopenia aged 60–75 from community organizations in Changchun city were randomly divided into a face-to-face traditional training group (TRHG), a general remote training group (GTHG), and an AI-based remote training group (AITHG). All groups underwent a 3-month program consisting of 24-form Taichi exercises, with a frequency of 3 sessions per week and each session lasting 40 min. The participants underwent Appendicular Skeletal Muscle Mass Index (ASMI), grip strength, 6-meter walking pace, Timed Up and Go test (TUGT), and quality of life score (QoL) tests before the experiment, during the mid-term, and after the experiment. This study used SPSS26.0 software to perform one-way ANOVA and repeated measures ANOVA tests to compare the differences among the three groups. A significance level of p 0.05). The same was in post-term tests (p > 0.05). Conclusion Compared to the pre-experiment, there was no significant difference at the post- experiment in the recovery effects on the muscle quality, physical activity ability, and life quality of patients with sarcopenia between the AI-based remote training group and the face-to-face traditional training group. 3D pose estimation is equally as effective as traditional rehabilitation methods in enhancing muscle quality, functionality and life quality in older adults with sarcopenia. Trial registration The trial was registered in ClinicalTrials.gov (NCT05767710).
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- 2024
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20. Impact of Fertilizers Application on Leaf Litter Decomposition and Nutrient Cycling in White Poplar (Populus alba L.) Forest Ecosystem
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Monira Fayaz, Abdul Baess Keyhani, Danish Bakhshyar, Li Zhaoguo, Md. Zahirul Islam, and Guang Yang
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Populus alba L ,fertilizers ,leaf litter decomposition ,nutrient cycling ,Forestry ,SD1-669.5 - Abstract
Fertilizer application plays a crucial role in the decomposition of white poplar leaf litter and cycling of nutrients within forest ecosystems. The impact of various fertilizer additions on white poplar leaf litter and nutrient cycling is poorly understood. In this study, seven treatments were conducted at the following levels: Control (CK), no adding mineral fertilizers, N fertilization (+N), N and P fertilization (+NP), N, P, K fertilization (+NPK), P, K (+PK), manure fertilizer (+MF), and bird fertilizers (+BF) in a white poplar plantation in Qadis district, and used the litterbag techniques to measure litter mass remaining. The main objectives of our study were: (1) to explore the response of white poplar leaf litter decomposition to various fertilizers and accelerate the decomposition process; (2) to examine the relationship between C, N, and P concentration and their stoichiometric characteristic in leaf litter and soil. In this investigation, our results showed that white poplar leaf litter was significantly affected by fertilizers, and the decomposition process was greatly accelerated with + MF, +NPK, and + BF. The decay rate constant k (year −1) shows the decomposition rate of white poplar leaf litter as follows: +MF > +NPK > +BF > +PK > +NP > +N > CK (0.56, 0.53, 0.52, 0.51,0.51,0.5, and 0.46). Soil nutrients N, P and K increased significantly during the decomposition time with + MF, +NPK, and + BF, respectively, while C:N, C:P, and N:P ratios were highest in the white poplar leaf litter, and lowest in soil, we observed significant association between nutrients concentrations in soil and white poplar leaf and their stoichiometric. This current study concluded that adding + MF, +NPK and + BF fertilizers might be the preferred management option as they provided potentially beneficial changes in leaf litter decomposition and increased nutrient concentration. The data obtained will be a valuable reference for fertilization management strategies in forest ecosystems.
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- 2024
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21. Multi-modal imaging for dynamic visualization of osteogenesis and implant degradation in 3D bioprinted scaffolds
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Qian Feng, Kanwal Fatima, Ai Yang, Chenglin Li, Shuo Chen, Guang Yang, Xiaojun Zhou, and Chuanglong He
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In situ monitoring ,3D bioprinting ,Magnetic resonance imaging ,Near-infrared fluorescence ,Implant degradation ,Bone regeneration ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Biology (General) ,QH301-705.5 - Abstract
In situ monitoring of bone regeneration enables timely diagnosis and intervention by acquiring vital biological parameters. However, an existing gap exists in the availability of effective methodologies for continuous and dynamic monitoring of the bone tissue regeneration process, encompassing the concurrent visualization of bone formation and implant degradation. Here, we present an integrated scaffold designed to facilitate real-time monitoring of both bone formation and implant degradation during the repair of bone defects. Laponite (Lap), CyP-loaded mesoporous silica (CyP@MSNs) and ultrasmall superparamagnetic iron oxide nanoparticles (USPIO@SiO2) were incorporated into a bioink containing bone marrow mesenchymal stem cells (BMSCs) to fabricate functional scaffolds denoted as C@M/GLU using 3D bioprinting technology. In both in vivo and in vitro experiments, the composite scaffold has demonstrated a significant enhancement of bone regeneration through the controlled release of silicon (Si) and magnesium (Mg) ions. Employing near-infrared fluorescence (NIR-FL) imaging, the composite scaffold facilitates the monitoring of alkaline phosphate (ALP) expression, providing an accurate reflection of the scaffold's initial osteogenic activity. Meanwhile, the degradation of scaffolds was monitored by tracking the changes in the magnetic resonance (MR) signals at various time points. These findings indicate that the designed scaffold holds potential as an in situ bone implant for combined visualization of osteogenesis and implant degradation throughout the bone repair process.
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- 2024
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22. Using artificial intelligence and predictive modelling to enable learning healthcare systems (LHS) for pandemic preparedness
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Anshu Ankolekar, Lisanne Eppings, Fabio Bottari, Inês Freitas Pinho, Kit Howard, Rebecca Baker, Yang Nan, Xiaodan Xing, Simon LF Walsh, Wim Vos, Guang Yang, and Philippe Lambin
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Learning Healthcare Systems ,Artificial Intelligence ,Predictive Modeling ,Data Harmonization ,Explainable AI ,Biotechnology ,TP248.13-248.65 - Abstract
In anticipation of potential future pandemics, we examined the challenges and opportunities presented by the COVID-19 outbreak. This analysis highlights how artificial intelligence (AI) and predictive models can support both patients and clinicians in managing subsequent infectious diseases, and how legislators and policymakers could support these efforts, to bring learning healthcare system (LHS) from guidelines to real-world implementation. This report chronicles the trajectory of the COVID-19 pandemic, emphasizing the diverse data sets generated throughout its course. We propose strategies for harnessing this data via AI and predictive modelling to enhance the functioning of LHS. The challenges faced by patients and healthcare systems around the world during this unprecedented crisis could have been mitigated with an informed and timely adoption of the three pillars of the LHS: Knowledge, Data and Practice. By harnessing AI and predictive analytics, we can develop tools that not only detect potential pandemic-prone diseases early on but also assist in patient management, provide decision support, offer treatment recommendations, deliver patient outcome triage, predict post-recovery long-term disease impacts, monitor viral mutations and variant emergence, and assess vaccine and treatment efficacy in real-time. A patient-centric approach remains paramount, ensuring patients are both informed and actively involved in disease mitigation strategies.
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- 2024
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23. CMRxRecon: A publicly available k-space dataset and benchmark to advance deep learning for cardiac MRI
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Chengyan Wang, Jun Lyu, Shuo Wang, Chen Qin, Kunyuan Guo, Xinyu Zhang, Xiaotong Yu, Yan Li, Fanwen Wang, Jianhua Jin, Zhang Shi, Ziqiang Xu, Yapeng Tian, Sha Hua, Zhensen Chen, Meng Liu, Mengting Sun, Xutong Kuang, Kang Wang, Haoran Wang, Hao Li, Yinghua Chu, Guang Yang, Wenjia Bai, Xiahai Zhuang, He Wang, Jing Qin, and Xiaobo Qu
- Subjects
Science - Abstract
Abstract Cardiac magnetic resonance imaging (CMR) has emerged as a valuable diagnostic tool for cardiac diseases. However, a significant drawback of CMR is its slow imaging speed, resulting in low patient throughput and compromised clinical diagnostic quality. The limited temporal resolution also causes patient discomfort and introduces artifacts in the images, further diminishing their overall quality and diagnostic value. There has been growing interest in deep learning-based CMR imaging algorithms that can reconstruct high-quality images from highly under-sampled k-space data. However, the development of deep learning methods requires large training datasets, which have so far not been made publicly available for CMR. To address this gap, we released a dataset that includes multi-contrast, multi-view, multi-slice and multi-coil CMR imaging data from 300 subjects. Imaging studies include cardiac cine and mapping sequences. The ‘CMRxRecon’ dataset contains raw k-space data and auto-calibration lines. Our aim is to facilitate the advancement of state-of-the-art CMR image reconstruction by introducing standardized evaluation criteria and making the dataset freely accessible to the research community.
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- 2024
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24. Prognostic role of CRABP2 in lung cancer: a meta-analysis
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Guang Yang, Qifan Yin, Wenhao Wang, Siwei Xu, and Huining Liu
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Lung cancer ,Prognosis ,CRABP2 ,Meta-analysis ,Surgery ,RD1-811 ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Background The prognostic value of cellular retinoic acid-binding protein 2 (CRABP2), in lung cancer patients remains to be uncertained. Therefore, our research attempted to assess the relationship between CRABP2 and survival analysis in lung cancer patients through meta-analysis. Method Related literature retrieved from Cochrane Library, Ovid, Embase, PubMed, the CNKI, and the Web of Science. The latest update of the search was May 1, 2023. The outcome indicators included as effective measures in the study were hazard ratio (HR), and 95% confidence interval (CI). The Stata 12.0 software was used to analyze the data. Results A total of4 studies were finally enrolled in our meta-analysis. The increased plasma level of CRABP2 predicted poor OS in lung cancer patient with a combined HR of 1.14 (95% CI: 1.00–1.30), and were not associated with poor PFS with combined HR: 1.15% CI: 0.63–2.09) in lung cancer patients. Conclusions Our meta-analysis found the increased plasma level of CRABP2 was associated with poor OS independently in NSCLC patients. The plasma CRABP2 level may be an indicator of biological aggressiveness of the tumor. Our research was promising regarding the feasibility and utility of plasma CRABP2 as a novel prognostic biomarker in NSCLC, and the findings warrant further investigation.
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- 2024
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25. Structure-guided conversion from an anaplastic lymphoma kinase inhibitor into Plasmodium lysyl-tRNA synthetase selective inhibitors
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Jintong Zhou, Mingyu Xia, Zhenghui Huang, Hang Qiao, Guang Yang, Yunan Qian, Peifeng Li, Zhaolun Zhang, Xinai Gao, Lubin Jiang, Jing Wang, Wei Li, and Pengfei Fang
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Biology (General) ,QH301-705.5 - Abstract
Abstract Aminoacyl-tRNA synthetases (aaRSs) play a central role in the translation of genetic code, serving as attractive drug targets. Within this family, the lysyl-tRNA synthetase (LysRS) constitutes a promising antimalarial target. ASP3026, an anaplastic lymphoma kinase (ALK) inhibitor was recently identified as a novel Plasmodium falciparum LysRS (PfLysRS) inhibitor. Here, based on cocrystal structures and biochemical experiments, we developed a series of ASP3026 analogues to improve the selectivity and potency of LysRS inhibition. The leading compound 36 showed a dissociation constant of 15.9 nM with PfLysRS. The inhibitory efficacy on PfLysRS and parasites has been enhanced. Covalent attachment of l-lysine to compound 36 resulted in compound 36K3, which exhibited further increased inhibitory activity against PfLysRS but significantly decreased activity against ALK. However, its inhibitory activity against parasites did not improve, suggesting potential future optimization directions. This study presents a new example of derivatization of kinase inhibitors repurposed to inhibit aaRS.
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- 2024
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26. Multifunctional nano-in-micro delivery systems for targeted therapy in fundus neovascularization diseases
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Xin Liu, Keke Huang, Fuxiao Zhang, Ge Huang, Lu Wang, Guiyu Wu, Hui Ren, Guang Yang, and Zhiqing Lin
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Nano-in-micro (NIM) delivery system ,Nanoparticles ,Drug delivery ,Fundus neovascular disease ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Abstract Fundus neovascularization diseases are a series of blinding eye diseases that seriously impair vision worldwide. Currently, the means of treating these diseases in clinical practice are continuously evolving and have rapidly revolutionized treatment opinions. However, key issues such as inadequate treatment effectiveness, high rates of recurrence, and poor patient compliance still need to be urgently addressed. Multifunctional nanomedicine can specifically respond to both endogenous and exogenous microenvironments, effectively deliver drugs to specific targets and participate in activities such as biological imaging and the detection of small molecules. Nano-in-micro (NIM) delivery systems such as metal, metal oxide and up-conversion nanoparticles (NPs), quantum dots, and carbon materials, have shown certain advantages in overcoming the presence of physiological barriers within the eyeball and are widely used in the treatment of ophthalmic diseases. Few studies, however, have evaluated the efficacy of NIM delivery systems in treating fundus neovascular diseases (FNDs). The present study describes the main clinical treatment strategies and the adverse events associated with the treatment of FNDs with NIM delivery systems and summarizes the anatomical obstacles that must be overcome. In this review, we wish to highlight the principle of intraocular microenvironment normalization, aiming to provide a more rational approach for designing new NIM delivery systems to treat specific FNDs. Graphical Abstract
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- 2024
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27. PICALM::MLLT10 may indicate a new subgroup of acute leukemias with miscellaneous immunophenotype and poor initial treatment response but showing sensitivity to venetoclax
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Haimin Sun, Yongmei Zhu, Jianfeng Li, Lingling Zhao, Guang Yang, Zeying Yan, and Sujiang Zhang
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acute leukemia ,immunophenotyping ,PICALM::MLLT10 ,venetoclax ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract The PICALM::MLLT10 fusion gene is a rare but recurrent event in acute leukemia (AL) associated with poor prognosis. It is still confused whether PICALM::MLLT10 can solely correspond to acute myeloid leukemia (AML) or acute lymphoblastic leukemia (ALL) or acute leukemias of ambiguous lineage (ALAL). Here, we reported a series of PICALM::MLLT10 positive AL patients with miscellaneous immunophenotype including T‐ALL, ALAL, AML, and B‐ALL, complex karyotype, half of extramedullary disease (EMD), frequently concomitant PHF6 mutation, and poor initial treatment response to standard chemotherapy aiming to different immunophenotype, but showing sensitivity to combining chemotherapy especially integrated with venetoclax, suggesting this fusion gene may indicate a new subgroup of AL. Eighteen PICALM::MLLT10 positive patients of 533 AL patients (18/533, 3.4%) were identified by RNA sequencing in our center. We found PICALM::MLLT10 positive AL showing miscellaneous immunophenotype, higher expression of leukemic stemness genes and lower expression of biomarkers of venetoclax resistance, more extramedullary involvement, and especially poor response to conventional induction chemotherapy, but may benefit from venetoclax as well as low‐dose Ara‐C, granulocyte colony‐stimulating factor (G‐CSF), and anthracyclines combination chemotherapy. Sequential hematopoietic stem cell transplantation (HSCT) after chemotherapy combined with venetoclax may further improve long‐term survival in AL patients with complete remission (CR) even measurable residual disease (MRD) positive.
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- 2024
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28. Full electrical manipulation of perpendicular exchange bias in ultrathin antiferromagnetic film with epitaxial strain
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Jie Qi, Yunchi Zhao, Yi Zhang, Guang Yang, He Huang, Haochang Lyu, Bokai Shao, Jingyan Zhang, Jialiang Li, Tao Zhu, Guoqiang Yu, Hongxiang Wei, Shiming Zhou, Baogen Shen, and Shouguo Wang
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Science - Abstract
Abstract Achieving effective manipulation of perpendicular exchange bias effect remains an intricate endeavor, yet it stands a significance for the evolution of ultra-high capacity and energy-efficient magnetic memory and logic devices. A persistent impediment to its practical applications is the reliance on external magnetic fields during the current-induced switching of exchange bias in perpendicularly magnetized structures. This study elucidates the achievement of a full electrical manipulation of the perpendicular exchange bias in the multilayers with an ultrathin antiferromagnetic layer. Owing to the anisotropic epitaxial strain in the 2-nm-thick IrMn3 layer, the considerable exchange bias effect is clearly achieved at room temperature. Concomitantly, a specific global uncompensated magnetization manifests in the IrMn3 layer, facilitating the switching of the irreversible portion of the uncompensated magnetization. Consequently, the perpendicular exchange bias can be manipulated by only applying pulsed current, notably independent of the presence of any external magnetic fields.
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- 2024
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29. Self-adaptive pyroptosis-responsive nanoliposomes block pyroptosis in autoimmune inflammatory diseases
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Kaiwang Xu, Huang Yang, Jinghua Fang, Kaijie Qiu, Haotian Shen, Guanrui Huang, Qiangqiang Zheng, Canlong Wang, Tengjing Xu, Xinning Yu, Jiajie Wang, Yunting Lin, Jiacheng Dai, Yuting Zhong, Hongyun Song, Sunan Zhu, Siheng Wang, Zhuxing Zhou, Guang Yang, Zhengwei Mao, Zongyou Pan, and Xuesong Dai
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Nanoliposome ,Pyroptosis ,Autoimmune inflammatory diseases ,Responsive drug delivery ,Anti-inflammation ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Biology (General) ,QH301-705.5 - Abstract
Nanoliposomes have a broad range of applications in the treatment of autoimmune inflammatory diseases because of their ability to considerably enhance drug transport. For their clinical application, nanoliposomes must be able to realize on-demand release of drugs at disease sites to maximize drug-delivery efficacy and minimize side effects. Therefore, responsive drug-release strategies for inflammation treatment have been explored; however, no specific design has been realized for a responsive drug-delivery system based on pyroptosis-related inflammation. Herein, we report a pioneering strategy for self-adaptive pyroptosis-responsive liposomes (R8-cardiolipin-containing nanoliposomes encapsulating dimethyl fumarate, RC-NL@DMF) that precisely release encapsulated anti-pyroptotic drugs into pyroptotic cells. The activated key pyroptotic protein, the N-terminal domain of gasdermin E, selectively integrates with the cardiolipin of liposomes, thus forming pores for controlled drug release, pyroptosis, and inflammation inhibition. Therefore, RC-NL@DMF exhibited effective therapeutic efficacies to alleviate autoimmune inflammatory damages in zymosan-induced arthritis mice and dextran sulfate sodium-induced inflammatory bowel disease mice. Our novel approach holds great promise for self-adaptive pyroptosis-responsive on-demand drug delivery, suppressing pyroptosis and treating autoimmune inflammatory diseases.
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- 2024
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30. Longitudinal changes in the volume of residual lung lobes after lobectomy for lung cancer: a retrospective cohort study
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De-Hao Tu, Chong Yi, Qianyun Liu, Lingmei Huang, Guang Yang, and Rirong Qu
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Lung cancer ,Lobectomy ,Pulmonary function ,Lung volume ,Video-assisted thoracic surgery ,Medicine ,Science - Abstract
Abstract It is unclear how the residual lobe volume changes over time after lobectomy. This study aims to clarify the temporal patterns of volume changes in each remaining lung lobe post-lobectomy. A retrospective review was conducted on patients who underwent lobectomy for lung cancer at Yueyang Central Hospital from January to December 2021. Lung CT images were reconstructed in three dimensions to calculate the volumes of each lung lobe preoperatively and at 1, 6, and 12 months postoperatively. A total of 182 patients were included. Postoperatively, the median total lung volume change rates relative to preoperative values were -20.1%, -9.3%, and -5.9% at 1, 6, and 12 months, respectively. Except for the right middle lobe in patients who underwent right upper lobectomy, the volumes of individual lung lobes exceeded preoperative values. The volume growth of the lung on the side of the resection was significantly more than that of the lung on the opposite side. For left lobectomy patients, the right lower lobe’s volume change rate exceeded that of the right upper and middle lobes. Among right lobectomy patients, the left lower lobe and the relatively inferior lobe of right lung had higher volume change rates than the superior one. Right middle lobe change rate was more in patients with right lower lobectomy than right upper lobectomy. Six months postoperatively, FEV1% and right middle lobectomy were positively correlated with the overall volume change rate. One year postoperatively, only age was negatively correlated with the overall volume change rate. 75 patients had pulmonary function tests. Postoperative FEV1 change linearly correlated with 1-year lung volume change rate, but not with theoretical total lung volume change rate or segmental method calculated FEV1 change. Time-dependent compensatory volume changes occur in remaining lung lobe post-lobectomy, with stronger compensation observed in the relatively inferior lobe compared to the superior one(s). Preoperative lung function and age may affect compensation level.
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- 2024
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31. Detection and identification of Bogia coconut syndrome phytoplasma from seed-associated tissues and seedlings of coconut (Cocos nucifera) and betel nut (Areca catechu)
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Hengyu Lu, Bree Wilson, Hanfang Zhang, Sharon B. Woruba, Bowen Feng, Anne C. Johnson, Birte Komolong, Lastus Kuniata, Guang Yang, and Geoff M. Gurr
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Seed borne ,Seed transmission ,Lethal yellowing disease ,16S rRNA ,Medicine ,Science - Abstract
Abstract Evidence for seed transmission of phytoplasmas has grown in several pathosystems including coconut (Cocos nucifera). Bogia coconut syndrome (BCS) is a disease associated with the lethal yellowing syndrome associated with the presence of ‘Candidatus Phytoplasma noviguineense’ that affects coconut, betel nut (Areca catechu) and bananas (Musa spp.) in Papua New Guinea. Coconut and betel nut drupes were sampled from BCS-infected areas in Papua New Guinea, dissected, the extracted nucleic acid was used in polymerase chain reaction (PCR), and loop mediated isothermal amplification (LAMP) used to check for presence of phytoplasma DNA. In a second study, drupes of both plant species were collected from multiple field sites and grown in insect-proof cages. Leaf samples taken at 6 months were also tested with PCR and LAMP. The studies of dissected coconut drupes detected phytoplasma DNA in several tissues including the embryo. Drupes from betel nut tested negative. Among the seedlings, evidence of possible seed transmission was found in both plant species. The results demonstrate the presence of ‘Ca. P. noviguineense’ in coconut drupes and seedlings, and in seedlings of betel nut; factors that need to be considered in ongoing management and containment efforts.
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- 2024
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32. Investigating the influence of Ni interlayers on Fe/Al laser welded joints: A first-principles study
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Haoyue Wu, Guang Yang, Yue Li, Min Lei, Xuewen Li, and Yulong Li
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Separation work ,First-principles calculations ,Steel/aluminium laser welded joint ,Nickel foil interlayer ,Mining engineering. Metallurgy ,TN1-997 - Abstract
201 Stainless steel and 5052 aluminium alloy were laser lap welded, both with and without a Ni foil interlayer. The Ni addition enhanced the metallurgical reaction between molten stainless steel/aluminium, resulting in the formation of the Al0.9Ni1.1 intermetallic compound. First-principles calculations estimated the equilibrium lattice and properties of IMCs (intermetallic compounds). A structural model of the interface revealed that the bonding strengths of Al/IMC and Fe/IMC interfaces surpassed those of IMC/IMC interfaces, making cracks prone to initiate and expand at the latter. Joints without Ni reached a max tensile shear strength of 74.5 N/mm, while those with Ni increased significantly to 101.8 N/mm, marking a substantial 36.6% enhancement.
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- 2024
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33. The relationship between weight-adjusted-waist index and suicidal ideation: evidence from NHANES
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Shijie Guo, Guangwei Qing, Qiqi Chen, and Guang Yang
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Waist-to-weight index ,Suicidal ideation ,Mental health assessments ,Cross-sectional analysis ,Predictive accuracy ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background Amidst growing evidence of the intricate link between physical and mental health, this study aims to dissect the relationship between the waist-to-weight index (WWI) and suicidal ideation within a representative sample of the US population, proposing WWI as a novel metric for suicide risk assessment. Methods The study engaged a sample of 9500 participants in a cross-sectional design. It employed multivariate logistic and linear regression analyses to probe the association between WWI and suicidal ideation. It further examined potential nonlinear dynamics using a weighted generalized additive model alongside stratified analyses to test the relationship's consistency across diverse demographic and health variables. Results Our analysis revealed a significant positive correlation between increased WWI and heightened suicidal ideation, characterized by a nonlinear relationship that persisted in the adjusted model. Subgroup analysis sustained the association's uniformity across varied population segments. Conclusions The study elucidates WWI's effectiveness as a predictive tool for suicidal ideation, underscoring its relevance in mental health evaluations. By highlighting the predictive value of WWI, our findings advocate for the integration of body composition considerations into mental health risk assessments, thereby broadening the scope of suicide prevention strategies.
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- 2024
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34. The landscape of NUP98 rearrangements clinical characteristics and treatment response from 1491 acute leukemia patients
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Jie Tian, Yongmei Zhu, Jianfeng Li, Guang Yang, Xiangqin Weng, Ting Huang, Lingling Zhao, Haimin Sun, Zeying Yan, and Sujiang Zhang
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2024
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35. Moxibustion ameliorates chronic inflammatory visceral pain via spinal circRNA-miRNA-mRNA networks: a central mechanism study
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Dan Zhang, Xiaoqing Dong, Xiaoying Li, Yanting Yang, Hongna Li, Yue Hong, Guang Yang, Xiehe Kong, Xuejun Wang, and Xiaopeng Ma
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Visceral pain ,Colitis ,Moxibustion ,Analgesia ,Central mechanism ,ceRNA network ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract This study aimed to unveil the central mechanism of moxibustion treating chronic inflammatory visceral pain (CIVP) from the angle of circRNA-miRNA-mRNA networks in the spinal cord. The rat CIVP model was established using a mixture of 5% (w/v) 2,4,6-trinitrobenzene sulfonic acid and 50% ethanol at a volume ratio of 2:1 via enema. Rats in the moxibustion group received herb-partitioned moxibustion at Tianshu (ST25, bilateral) and Qihai (CV6) points. The abdominal withdrawal reflex (AWR), mechanical withdrawal threshold (MWT), and thermal withdrawal latency (TWL) were adopted for pain behavior observation and pain sensitivity assessment. The circRNA, miRNA, and mRNA expression profiles were detected using the high-throughput sequencing technique. Relevant databases and bioinformatics analysis methods were used to screen for differentially expressed (DE) RNAs and build a circRNA-miRNA-mRNA (competing endogenous RNA) ceRNA regulatory network. The real-time quantitative PCR was employed to verify the sequencing result. CIVP rat models had a significantly higher AWR and lower TWL and MWT than normal rats. Between normal and model rats, there were 103 DE-circRNAs, 16 DE-miRNAs, and 397 DE-mRNAs in the spinal cord. Compared with the model group, the moxibustion group had a lower AWR and higher TWL and MWT; between these two groups, there were 118 DE-circRNAs, 15 DE-miRNAs, and 804 DE-mRNAs in the spinal cord. Two ceRNA networks were chosen to be verified. As a result, moxibustion’s analgesic effect on visceral pain in CIVP rats may be associated with regulating the circRNA_02767/rno-miR-483-3p/Gfap network in the spinal cord and improving central sensitization.
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- 2024
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36. Dynamic molecular signatures of acute myocardial infarction based on transcriptomics and metabolomics
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Xuejiao Wang, Guang Yang, Jun Li, Chao Meng, and Zengming Xue
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Medicine ,Science - Abstract
Abstract Acute myocardial infarction (AMI) commonly precedes ventricular remodeling, heart failure. Few dynamic molecular signatures have gained widespread acceptance in mainstream clinical testing despite the discovery of many potential candidates. These unmet needs with respect to biomarker and drug discovery of AMI necessitate a prioritization. We enrolled patients with AMI aged between 30 and 70. RNA-seq analysis was performed on the peripheral blood mononuclear cells collected from the patients at three time points: 1 day, 7 days, and 3 months after AMI. PLC/LC–MS analysis was conducted on the peripheral blood plasma collected from these patients at the same three time points. Differential genes and metabolites between groups were screened by bio-informatics methods to understand the dynamic changes of AMI in different periods. We obtained 15 transcriptional and 95 metabolite expression profiles at three time points after AMI through high-throughput sequencing. AMI-1d: enrichment analysis revealed the biological features of 1 day after AMI primarily included acute inflammatory response, elevated glycerophospholipid metabolism, and decreased protein synthesis capacity. Phosphatidylcholine (PC) and phosphatidylethanolamine (PE) might stand promising biomarkers to differentiate post-AMI stage. Anti-inflammatory therapy during the acute phase is an important direction for preventing related pathology. AMI-7d: the biological features of this stage primarily involved the initiation of cardiac fibrosis response and activation of platelet adhesion pathways. Accompanied by upregulated TGF-beta signaling pathway and ECM receptor interaction, GP5 help assess platelet activation, a potential therapeutic target to improve haemostasis. AMI-3m: the biological features of 3 months after AMI primarily showed a vascular regeneration response with VEGF signaling pathway, NOS3 and SHC2 widely activated, which holds promise for providing new therapeutic approaches for AMI. Our analysis highlights transcriptional and metabolomics signatures at different time points after MI, which deepens our understanding of the dynamic biological responses and associated molecular mechanisms that occur during cardiac repair.
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- 2024
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37. COVID-19 increases extracorporeal coagulation during hemodialysis associated with upregulation of vWF/FBLN5 signaling in patients with severe/critical symptoms
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Guang Yang, Hui Shan, Dibin Wu, Sanmu Li, Zhiwei Lai, Fengping Zheng, Zibo Xiong, Zuying Xiong, Yuhan Diao, Ying Shan, Yun Chen, Aihong Wang, Wei Liang, and Yuxin Yin
- Subjects
Anticoagulant ,Blood clots ,Coagulation ,Hemodialysis ,New coronavirus-19 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background COVID-19 has been shown to increase the risk of extracorporeal coagulation during hemodialysis in patients, but the underlying mechanism remains unclear. This study aimed to investigate the effect and mechanism of COVID-19 on the risk of extracorporeal coagulation in patients with chronic kidney disease undergoing hemodialysis. Methods A retrospective analysis of the extracorporeal coagulation status of 339 hemodialysis patients at our center before and after COVID-19 infection was performed, including subgroup analyses. Post-infection blood composition was analyzed by protein spectrometry and ELISA. Results Compared to the pre-COVID-19 infection period, COVID-19-induced extracorporeal coagulation predominantly occurred in patients with severe/critical symptoms. Further proteomic analysis demonstrated that in patients with severe/critical symptoms, the coagulation cascade reaction, platelet activation, inflammation, and oxidative stress-related pathways were significantly amplified compared to those in patients with no/mild symptoms. Notably, the vWF/FBLN5 pathway, which is associated with inflammation, vascular injury, and coagulation, was significantly upregulated. Conclusions Patients with severe/critical COVID-19 symptoms are at a higher risk of extracorporeal coagulation during hemodialysis, which is associated with the upregulation of the vWF/FBLN5 signaling pathway. These findings highlight the importance of early anticoagulant therapy initiation in COVID-19 patients with severe/critical symptoms, particularly those undergoing hemodialysis. Additionally, vWF/FBLN5 upregulation may be a novel mechanism for virus-associated thrombosis/coagulation.
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- 2024
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38. Evolutionary genetics of pulmonary anatomical adaptations in deep-diving cetaceans
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Boxiong Guo, Yixuan Sun, Yuehua Wang, Ya Zhang, Yu Zheng, Shixia Xu, Guang Yang, and Wenhua Ren
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Decompression sickness ,Lung fibrosis ,Amino acid substitution ,Molecular evolutionary analysis ,Cetaceans ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Cetaceans, having experienced prolonged adaptation to aquatic environments, have undergone evolutionary changes in their respiratory systems. This process of evolution has resulted in the emergence of distinctive phenotypic traits, notably the abundance of elastic fibers and thickened alveolar walls in their lungs, which may facilitate alveolar collapse during diving. This structure helps selective exchange of oxygen and carbon dioxide, while minimizing nitrogen exchange, thereby reducing the risk of DCS. Nevertheless, the scientific inquiry into the mechanisms through which these unique phenotypic characteristics govern the diving behavior of marine mammals, including cetaceans, remains unresolved. Results This study entails an evolutionary analysis of 42 genes associated with pulmonary fibrosis across 45 mammalian species. Twenty-one genes in cetaceans exhibited accelerated evolution, featuring specific amino acid substitutions in 14 of them. Primarily linked to the development of the respiratory system and lung morphological construction, these genes play a crucial role. Moreover, among marine mammals, we identified eight genes undergoing positive selection, and the evolutionary rates of three genes significantly correlated with diving depth. Specifically, the SFTPC gene exhibited convergent amino acid substitutions. Through in vitro cellular experiments, we illustrated that convergent amino acid site mutations in SFTPC contribute positively to pulmonary fibrosis in marine mammals, and the presence of this phenotype can induce deep alveolar collapse during diving, thereby reducing the risk of DCS during diving. Conclusions The study unveils pivotal genetic signals in cetaceans and other marine mammals, arising through evolution. These genetic signals may influence lung characteristics in marine mammals and have been linked to a reduced risk of developing DCS. Moreover, the research serves as a valuable reference for delving deeper into human diving physiology.
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- 2024
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39. Prevalence and trends of autism spectrum disorder and other developmental disabilities among children and adolescents in the United States from 2019 to 2021
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Wenrong Ge, Cancan Zhang, Guang Yang, and Bo Zhang
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neurodevelopmental disorders ,learning disability ,National Health Interview Survey (NHIS) data ,racial disparities ,prevalence of autism spectrum disorder ,Psychiatry ,RC435-571 - Abstract
BackgroundThe National Health Interview Survey (NHIS) is a comprehensive health survey conducted by the National Center for Health Statistics (NCHS) in the U.S., providing valuable insights into the health status of the population. This study focuses on the NHIS child survey between 2019 and 2021, exploring developmental disabilities in U.S. children, including autism spectrum disorder (ASD), attention deficit/hyperactivity disorder or attention-deficit disorder (ADHD/ADD), intellectual disability (ID), other developmental delay (other DD), and learning disability (LD).ObjectiveLeveraging NHIS data, our primary objective is to investigate the latest trends and disparities in the prevalence of developmental disabilities among various racial-ethnic groups.MethodsEmploying a repeated cross-sectional design, we analyzed NHIS data from 2019 to 2021, focusing on children aged 3-17. The survey employed a meticulous stratified multi-stage sampling design. We utilized SAS version 9.4 for data analysis, calculating race-ethnicity-specific prevalence rates and employing weighted linear regression and the Rao-Scott chi-square test for trend analysis.ResultsAmong 19,490 children, prevalence rates varied: ASD (3.11%), ADHD/ADD (9.50%), ID (1.85%), other DD (5.66%), and LD (7.49%). Non-Hispanic black children exhibited higher rates of ID and LD, while non-Hispanic white children had the highest ADHD/ADD prevalence. Disparities persisted across sociodemographic subgroups, with variations in prevalence rates.ConclusionOur study reveals an increase in ASD prevalence and persistent disparities among racial-ethnic groups. Non-Hispanic black children face elevated risks of ID and LD, while non-Hispanic white children exhibit higher rates of ADHD/ADD.
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- 2024
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40. Aortic aneurysm: pathophysiology and therapeutic options
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Guang Yang, Abbas Khan, Wei Liang, Zibo Xiong, and Johannes Stegbauer
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aortic aneurysm ,aortic lesion ,inflammation ,oxidative stress ,renin–angiotensin system ,Medicine - Abstract
Abstract Aortic aneurysm (AA) is an aortic disease with a high mortality rate, and other than surgery no effective preventive or therapeutic treatment have been developed. The renin–angiotensin system (RAS) is an important endocrine system that regulates vascular health. The ACE2/Ang‐(1–7)/MasR axis can antagonize the adverse effects of the activation of the ACE/Ang II/AT1R axis on vascular dysfunction, atherosclerosis, and the development of aneurysms, thus providing an important therapeutic target for the prevention and treatment of AA. However, products targeting the Ang‐(1–7)/MasR pathway still lack clinical validation. This review will outline the epidemiology of AA, including thoracic, abdominal, and thoracoabdominal AA, as well as current diagnostic and treatment strategies. Due to the highest incidence and most extensive research on abdominal AA (AAA), we will focus on AAA to explain the role of the RAS in its development, the protective function of Ang‐(1–7)/MasR, and the mechanisms involved. We will also describe the roles of agonists and antagonists, suggest improvements in engineering and drug delivery, and provide evidence for Ang‐(1–7)/MasR's clinical potential, discussing risks and solutions for clinical use. This study will enhance our understanding of AA and offer new possibilities and promising targets for therapeutic intervention.
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- 2024
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41. Zooplankton vertical stratification in the East-pacific and Indian sectors of the Southern Ocean
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Yunzhe Liu, Yanqing Wang, Yongming Sun, Guang Yang, and Kerrie M. Swadling
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mesozooplankton ,vertical distribution ,Antarctic Surface Water ,Circumpolar Deep Water ,Antarctic zooplankton survey ,planktonic food webs ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
IntroductionIn the Southern Ocean, the large-scale distribution of zooplankton, including their abundance and community composition from the epipelagic to the upper bathypelagic layers, remains poorly understood. This gap in knowledge limits our comprehension of their ecological and biogeochemical roles.MethodsTo better understand their community structure, depth-stratified zooplankton samples were collected from 0 to 1500 m during four summers in the East-Pacific and Indian sectors of the Southern Ocean. In addition, analysis of environmental drivers including temperature, salinity, dissolved oxygen, and chlorophyll a concentration, as well as water masses was conducted.ResultsOur study indicates that zooplankton diversity may be similar between the two sectors, while zooplankton abundance was higher in the East-Pacific sector during different sampling months and years. Moreover, zooplankton abundance decreased with depth in both sectors. Based on cluster analysis, zooplankton communities were generally divided by either the epipelagic or the deeper layers’ communities. In both sectors, the epipelagic layer was dominated by cyclopoid copepods, such as Oithona similis and Oncaea curvata, as well as calanoid copepods including Calanoides acutus, Rhincalanus gigas, and Ctenocalanus citer, while copepods and other taxa including Chaetognatha, Amphipoda, and Ostracoda, were important contributors to the deep layer communities.DiscussionOur analysis revealed that water masses, combined with their physical characteristics such as specific temperature and salinity ranges and depth, along with biological factors such as chlorophyll a concentration, might be the most important drivers for structuring zooplankton communities from epipelagic to upper bathypelagic layer.
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- 2024
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42. Study on microstructure and refining effect of deformed Al-4.5Er-1Zr-1.5Ti master alloy
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Zhiguo Lei, Shengping Wen, Guang Yang, Wu Wei, Hui Huang, and Zuoren Nie
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Master alloy ,Grain refinement ,Ti2Al20Er ,Al3Ti ,Mining engineering. Metallurgy ,TN1-997 - Abstract
The microstructure and grain refinement of Al-4.5Er-1Zr-1.5Ti master alloy were analyzed by the refinement experiment, OM, SEM and XRD. The results show that the grain size of pure aluminum is reduced from 14,000μm to 202μm by Al-4.5Er-1Zr-1.5Ti master alloy, which is mainly due to the nucleation promoted by Ti2Al20Er, Al3Er and Al3Ti. Plastic deformation further improves the refining effect of the material by improving the primary phase size, and the Al-4.5Er-1Zr-1.5Ti −2ARB can refine the pure aluminum from 202 mμm to 150μm, and the refinement was increased by 25.7 %. The master alloy showed a better refinement effect in Al-5Cu alloy than pure aluminum, with a grain size of 92μm and a refinement improvement of 97.8 %.
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- 2024
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43. MOF-derived carbon-based catalysts with enhanced anti-coking property for the dry reforming of methane
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Zizhao Chen, Shuai Yan, Guang Yang, Qiang Hu, Yingquan Chen, Hanping Chen, Yonggang Yao, and Haiping Yang
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Dry reforming of methane ,Metal-organic framework ,Catalyst ,Spatial confinement ,Carbon deposition ,Environmental technology. Sanitary engineering ,TD1-1066 - Abstract
To avoid sintering and carbon deposition of conventionally loaded catalysts, a spatial confinement strategy was employed to design a high-performance catalyst for the dry reforming of methane (DRM) reaction. With tri-metallic Ni-Co-Mg metal-organic framework (MOF-74) as a precursor, a novel nanostructured NiCoMg@C catalyst was synthesized, where the active metals Ni and Co were confined within the carbon framework derived from MOF pyrolysis. Characterization results indicate that the catalyst synthesized with MOF as template has a high specific surface area, well-dispersed metals, and strong metal-support interactions. The introduction of a high content of Mg promoted the dispersion of active metal Ni and Co and increased the number and strength of surface basic sites. Among the catalysts, NiCoMg20@C exhibited optimal catalytic activity, with initial CH4 and CO2 conversion rates reaching 75.13 % and 85.29 %, respectively. More importantly, the catalyst showed high stability during 100 h DRM reaction at 700 °C without significant carbon deposition. This research provides a new perspective for the development of DRM catalysts.
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- 2024
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44. E3 ubiquitin ligases: key regulators of osteogenesis and potential therapeutic targets for bone disorders
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Heng-Rui Zhang, Yang-Hao Wang, Zhen-Ping Xiao, Guang Yang, Yun-Rong Xu, Zai-Tian Huang, Wei-Zhou Wang, and Fei He
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E3 ubiquitin ligases ,osteogenesis ,bone-related diseases ,osteoblast differentiation ,therapeutic targets ,Biology (General) ,QH301-705.5 - Abstract
Ubiquitination is a crucial post-translational modification of proteins that mediates the degradation or functional regulation of specific proteins. This process participates in various biological processes such as cell growth, development, and signal transduction. E3 ubiquitin ligases play both positive and negative regulatory roles in osteogenesis and differentiation by ubiquitination-mediated degradation or stabilization of transcription factors, signaling molecules, and cytoskeletal proteins. These activities affect the proliferation, differentiation, survival, and bone formation of osteoblasts (OBs). In recent years, advances in genomics, transcriptomics, and proteomics have led to a deeper understanding of the classification, function, and mechanisms of action of E3 ubiquitin ligases. This understanding provides new insights and approaches for revealing the molecular regulatory mechanisms of bone formation and identifying therapeutic targets for bone metabolic diseases. This review discusses the research progress and significance of the positive and negative regulatory roles and mechanisms of E3 ubiquitin ligases in the process of osteogenic differentiation. Additionally, the review highlights the role of E3 ubiquitin ligases in bone-related diseases. A thorough understanding of the role and mechanisms of E3 ubiquitin ligases in osteogenic differentiation could provide promising therapeutic targets for bone tissue engineering based on stem cells.
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- 2024
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45. Enhancing ductility and post-aging strength of tailor welded blanks through pre-aging friction stir welding
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Guang Yang, Xiaobo Fan, Zhichao Zhang, Yong Wang, and Shijian Yuan
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Aluminum alloy ultra-wide blank ,Pre-aging ,Friction stir welding ,Microstructure property ,Strengthening mechanism ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Achieving superior ductility, microstructure, and strength simultaneously in tailor-welded blanks remains challenging. To address this, pre-aging blanks before friction stir welding was proposed. Systematic studies were conducted on the microstructure, ductility, and post-aging strength of pre-aged 2219 aluminium alloy after friction stir welding. Uniaxial tensile tests evaluated the ductility of tailor-welded blanks at room and cryogenic temperatures, along with their mechanical properties after artificial aging. Microstructural characterization and Vickers hardness measurements elucidated the strengthening mechanisms between the welded region and base material. No abnormal grain growth was observed in the welded region post pre-aging welding; instead, a finer grain structure prevailed. Ductility of the tailor-welded blanks initially increased and then decreased with increasing rotational speed. Excellent elongations, 27.8% at room temperature and 32.4% at cryogenic temperatures, were obtained at a rotational speed of 1300 rpm, reaching 91.5% of the base material. This attributed to the finer grain boundary strengthening in the welded regions. After artificial aging, a joint efficiency of 93.5% was achieved, owing to effective compensation of the reduction in precipitation strengthening caused by the welded heat input through finer grain strengthening. This approach represents a novel method for preparing ultrawide blanks for forming integral large-sized aluminum alloy components.
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- 2024
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46. The VDAC1 oligomerization regulated by ATP5B leads to the NLRP3 inflammasome activation in the liver cells under PFOS exposure
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Yu Ma, Wei Yang, Peiyao Liang, Ruzhen Feng, Tianming Qiu, Jingyuan Zhang, Xiance Sun, Qiujuan Li, Guang Yang, and Xiaofeng Yao
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Perfluorooctane sulfonate ,VDAC1 oligomers ,NLRP3 inflammasome ,ATP5B ,Liver ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
As a persistent organic pollutant, perfluorooctane sulfonate (PFOS) has a serious detrimental impact on human health. It has been suggested that PFOS is associated with liver inflammation. However, the underlying mechanisms are still unclear. Here, PFOS was found to elevate the oligomerization tendency of voltage-dependent anion channel 1 (VDAC1) in the mice liver and human normal liver cells L-02. Inhibition of VDAC1 oligomerization alleviated PFOS-induced nucleotide-binding domain and leucine-rich repeat protein-3 (NLRP3) inflammasome activation. Cytoplasmic membrane VDAC1 translocated to mitochondria was also observed in response to PFOS. Therefore, the oligomerization of VDAC1 occurred mainly in the mitochondria. VDAC1 was found to interact with the ATP synthase beta subunit (ATP5B) under PFOS treatment. Knockdown of ATP5B or immobilization of ATP5B to the cytoplasmic membrane alleviated the increased VDAC1 oligomerization and NLRP3 inflammasome activation. Therefore, our results suggested that PFOS induced NLRP3 inflammasome activation through VDAC1 oligomerization, a process dependent on ATP5B to transfer VDAC1 from the plasma membrane to the mitochondria. The findings offer novel perspectives on the activation of the NLRP3 inflammasome, the regulatory mode on VDAC1 oligomerization, and the mechanism of PFOS toxicity.
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- 2024
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47. Corrigendum to 'Salidroside improves the hypoxic tumor microenvironment and reverses the drug resistance of platinum drugs via HIF-1α signaling pathway' [EBioMedicine 38 (2018) 25–36]
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Yuan Qin, Hui-juan Liu, Meng Li, Deng-hui Zhai, Yuan-hao Tang, Lan Yang, Kai-liang Qiao, Jia-huan Yang, Wei-long Zhong, Qiang Zhang, Yan-rong Liu, Guang Yang, Tao Sun, and Cheng Yang
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Medicine ,Medicine (General) ,R5-920 - Published
- 2024
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48. SARS‐CoV‐2 seroprevalence and associated factors among people living with HIV in Sierra Leone
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Wei Sun, Jinwen Song, Sulaiman Lakoh, Jinquan Chen, Abdulai T. Jalloh, Foday Sahr, Stephen Sevalie, Darlinda F. Jiba, Ibrahim F. Kamara, Yingrong Xin, Zhongyang Ye, Feng Ding, Li‐Zhong Dai, Ligui Wang, Xishui Zheng, and Guang Yang
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HIV infection ,immunoglobulin G ,SARS‐CoV‐2 ,seroepidemiologic studies ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Abstract Background Human immunodeficiency virus (HIV) infection is an important risk factor for Coronavirus Disease 2019 (COVID‐19), but data on the prevalence of COVID‐19 among people living with HIV (PLWH) is limited in low‐income countries. Our aim was to assess the seroprevalence of the severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) specific antibodies and associated factors among PLWH in Sierra Leone. Methods We conducted a cross‐sectional survey of PLWH aged 18 years or older in Sierra Leone between August 2022 and January 2023. Participants were tested for SARS‐CoV‐2 antibodies using a rapid SARS‐CoV‐2 antibody (immunoglobulin M/immunoglobulin G [IgG]) kits. Stepwise logistic regression was used to explore factors associated with SARS‐CoV‐2 antibody seroprevalence with a significance level of p
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- 2024
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49. Integrating transcriptomics and metabolomics to reveal the protective effect and mechanism of Bushen Kangshuai Granules on the elderly people
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Jun Hu, Fengmin Yang, Guang Yang, Juhua Pan, Yumeng Tan, Yalin Tang, Yongmei Liu, Hong Zhang, and Jie Wang
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aging ,Bushen Kangshuai Granules (BKG) ,traditional Chinese medicine ,transcriptomics ,metabolomics ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: Aging is characterized by a decline in the adaptability and resistance of the body. In this study, Bushen Kangshuai Granules (BKG), as a kind of Chinese herbal formula, was developed and shown to alleviate aging-related symptoms.Methods: Self-controlled study combined with RNA-seq and metabonomics were used to expound the efficacy and safety of BKG and revealed the regulation mechanism of BKG treating aging. In vitro experiments were used to confirm the analytical results. The aging cell model of AC16 cells were treated with D-galactose. The RT-qPCR was used to detect the impact of BKG on telomere length. The DCFH-DA staining was used for detecting intracellular ROS. The targeted signaling pathway was selected and verified using Western blot.Results: After 8 weeks of treatment, BKG significantly reduced SOD level (p = 0.046), TCM aging symptoms (p < 0.001) and TNF-α level (p = 0.044) in the elderly participants. High-throughput sequencing showed that BKG reversed the expression of 70 and 79 age-related genes and metabolites, respectively. Further enrichment analysis indicated that BKG downregulated the PI3K-AKT signaling pathway, extracellular matrix (ECM)-receptor interaction, and Rap1 signaling pathway, while up-regulating sphingolipid metabolism. The results of in vitro experiments show that, after D-gal treatment, the viability and telomere length of AC16 cells significantly decreased (p < 0.05), while the expression of ROS increased (p < 0.05), BKG significantly increased the telomere length of AC16 cells and reduced the level of ROS expression (p < 0.05). In addition, BKG decreased the expression of THBS1, PDGFRA, and EPS8L1(p < 0.05), consistent with the RNA-seq results. Our results also showed that BKG affects PI3K-AKT signaling pathway.Conclusion: BKG can significantly improve aging-related symptoms and increase SOD levels, which may be associated with the reversal of the expression of various aging-related genes. The PI3K-AKT signaling pathway and sphingolipid metabolism may be potential mechanisms underlying BKG anti-aging effects.
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- 2024
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50. Study of aging mechanisms in LiFePO4 batteries with various SOC levels using the zero-sum pulse method
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Jianqiang Kang, Guang Yang, Yongsheng Wang, Jing V. Wang, Qian Wang, and Guorong Zhu
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Electrochemistry ,Electrochemical energy storage ,Energy systems ,Science - Abstract
Summary: Investigating the correlation between aging mechanisms and state of charge (SOC) can optimize cycling conditions and prolong the life cycle of lithium-ion batteries (LIBs). A long-term cycle between a certain SOC range is usually employed to study this correlation. However, this method necessitates a lengthy period, running from months to years, prolonging the research duration significantly. The aging mechanisms obtained through this method are a result of the coupling of various SOC levels; the aging mechanisms at a specific SOC level are not accurately decoupled and analyzable. The proposed Zero-sum pulse method, using symmetrical pulses with small SOC amplitude variations on SOC, can explore aging mechanisms of LIBs at a specific SOC level and reduce the time to less than a week, which significantly expedite the research process. The aging mechanisms at 30%, 50%, 70%, and 90% SOC levels are explored to verify the accuracy and timeliness of this method.
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- 2024
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