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More than a century of impoundments in the Penobscot River, Maine, USA, has contributed to population declines in migratory fish in the system. A decade of change, research, and monitoring has revealed direct and indirect ways that dams have influenced the river habitat, connectivity for migratory fish, and the food web. The removal of two main-stem dams (in 2012 and 2013) and bolstering of fish passage have been part of coordinated restoration efforts in the watershed. Integral to this undertaking was support for short- and long-term monitoring and research that included physical habitat, fish passage, and broad scale ecological assessments. Herein we discuss the seven interconnected and complex ways that dams have affected the Penobscot River ecosystem, particularly for migratory fish. These include familiar influences ascribed to dams: i) impaired access to habitat, ii) injury and mortality, and iii) delays of migration. Other ecological influences are less studied and more subtle: iv) facilitation of predation, v) community shifts, and vi) demographic shifts. Lastly, dams result in vii) a loss of ecosystem services that would otherwise be intact in an unimpounded system. We draw on both direct examples from the Penobscot River and broader information to characterize how impoundments have transformed this ecosystem for more than a century. Recent dam removals and mitigation efforts have reestablished some of these ecological functions.

Abstract Several studies have examined the transmission dynamics of the novel COVID-19 disease in different parts of the world. Some have reported relationships with various environmental variables, suggesting that spread of the disease is enhanced in colder and drier climates. However, evidence is still scarce and mostly limited to a few countries, particularly from Asia. We examined the potential role of multiple environmental variables in COVID-19 infection rate [measured as mean relative infection rate = (number of infected inhabitants per week / total population) × 100.000) from February 23 to August 16, 2020 across 360 cities of Chile. Chile has a large climatic gradient (≈ 40º of latitude, ≈ 4000 m of altitude and 5 climatic zones, from desert to tundra), but all cities share their social behaviour patterns and regulations. Our results indicated that COVID-19 transmission in Chile was mostly related to three main climatic factors (minimum temperature, atmospheric pressure and relative humidity). Transmission was greater in colder and drier cities and when atmospheric pressure was lower. The results of this study support some previous findings about the main climatic determinants of COVID-19 transmission, which may be useful for decision-making and management of the disease.

Artisanal fisheries are essential, but for most the status of the stock supporting the fishing activity remains unknown due to lack of data and difficult access to sampling. For example, the artisanal fishery of sea silverside Odontesthes (Austromenidia) regia, in the Los Lagos administrative region of Chile, requires a data-limited approach to determine its status because the fishery administration has not invested in its monitoring. The approach consisted of estimating the spawning potential ratio (SPR) from length-frequency data collected in 2019 using length-based spawning potential ratio (LBSPR) and biological reference points using the only-catch optimized method (OCOM) to catch data covering from 1960 to 2020. In addition, five age-structured sea silverside populations were simulated considering uncertainty in recruitment and utilizing life-history parameters estimated by FishLife. According to LBSPR, the SPR was 0.58 (95% confidence intervals: 0.5-0.7), suggesting a fully exploited fishery status. The OCOM result was inconsistent with the life-history parameters and was discarded as a valid sea silverside stock assessment. The age-structured population simulations indicated evidence of a reduction in the spawning stock biomass close to 75% of the unexploited condition in 1960. Thus, the underexploited status reached a probability close to 49.4%, and the fully exploited status was 41.2%. The framework for a data-limited stock-assessment approach and results obtained here for the sea silverside are starting essential steps that may be emulated in other artisanal data-limited fisheries.

The intertidal crustaceans on the Chilean coast are characterized by high diversity and niche specialization. The present study applied a size overlap null model for intertidal decapod communities at four different sites on the Chilean coast. The results revealed that there is a size overlap for the four sites, though body size is significantly different for each location. This means that the reported species would share their ecological niches. The results agree with the first classic environmental descriptions for Chilean intertidal decapods at a local scale and support the observations for similar species on the southern Pacific and southern Atlantic coasts.

Listeria monocytogenes is causing listeriosis, a rare but severe foodborne infection. Listeriosis affects pregnant women, newborns, older adults, and immunocompromised individuals. Ready-to-eat (RTE) foods are the most common sources of transmission of the pathogen This study explored the virulence factors and antibiotic resistance in L. monocytogenes strains isolated from ready-to-eat (RTE) foods through in vitro and in silico testing by whole-genome sequencing (WGS). The overall positivity of L. monocytogenes in RTE food samples was 3.1% and 14 strains were isolated. L. monocytogenes ST8, ST2763, ST1, ST3, ST5, ST7, ST9, ST14, ST193, and ST451 sequence types were identified by average nucleotide identity, ribosomal multilocus sequence typing (rMLST), and core genome MLST. Seven isolates had serotype 1/2a, five 1/2b, one 4b, and one 1/2c. Three strains exhibited in vitro resistance to ampicillin and 100% of the strains carried the fosX, lin, norB, mprF, tetA, and tetC resistance genes. In addition, the arsBC, bcrBC, and clpL genes were detected, which conferred resistance to stress and disinfectants. All strains harbored hlyA, prfA, and inlA genes almost thirty-two the showed the bsh, clpCEP, hly, hpt, iap/cwhA, inlA, inlB, ipeA, lspA, mpl, plcA, pclB, oat, pdgA, and prfA genes. One isolate exhibited a type 11 premature stop codon (PMSC) in the inlA gene and another isolate a new mutation (deletion of A in position 819). The Inc18(rep25), Inc18(rep26), and N1011A plasmids and MGEs were found in nine isolates. Ten isolates showed CAS-Type II-B systems; in addition, Anti-CRISPR AcrIIA1 and AcrIIA3 phage-associated systems were detected in three genomes. These virulence and antibiotic resistance traits in the strains isolated in the RTE foods indicate a potential public health risk for consumers.

Background: Forest ecosystems provide services that are important for human use; one of the most critical ecosystem services is the provision and regulation of water. Basins with high forest improves hydrological functionality by promoting reduction in surface runoff, increase infiltration and aquifer recharge, and ensures base flow regulation amongst others. On the other hand, the conversion towards highly anthropized productive systems is usually accompanied by precarious environmental management that alters the hydrological cycle and reduction in water quality in basins. Aim: The goal of this study was to analyze land use changes and their effect on water efficiency index (WEI) in three sub-basins. Methodology: The methodology included a multi-temporal analysis of satellite images to identify land uses, also the use of SWAT (Soil and Water Assessment Tool) model for hydrological analysis in each sub-basin, information needed for calculating the WEI. Results: The results revealed the existence of no significant difference in terms of WEI between the sub-basins with predominant tree cover of native or artificial, being higher (0.89) than the WEI values reported by the sub-basin with agricultural land use (0.65). It is concluded that hydrological functions are more efficient in basins with forest cover, made up of native or exotic species, than agricultural land use with annual crop rotations. The results contribute to decision making on public policies associated to the rural productive activities. Concluded: Finally, we conclude the necessity of the promotion of forest plantation management techniques that avoid clear-cutting and multiple rotations in basin headwaters and riparian areas.

Cronobacter sakazakii is an enteropathogen that causes neonatal meningitis, septicemia, and necrotizing enterocolitis in preterm infants and newborns with a mortality rate of 15 to 80%. Powdered and dairy formulas (P-DF) have been implicated as major transmission vehicles and subsequently the presence of this pathogen in P-DF led to product recalls in Chile in 2017. The objective of this study was to use whole genome sequencing (WGS) and laboratory studies to characterize Cronobacter strains from the contaminated products. Seven strains were identified as C. sakazakii, and the remaining strain was Franconibacter helveticus. All C. sakazakii strains adhered to a neuroblastoma cell line, and 31 virulence genes were predicted by WGS. The antibiograms varied between strains. and included mcr-9.1 and blaCSA genes, conferring resistance to colistin and cephalothin, respectively. The C. sakazakii strains encoded I-E and I-F CRISPR-Cas systems, and carried IncFII(pECLA), Col440I, and Col(pHHAD28) plasmids. In summary, WGS enabled the identification of C. sakazakii strains and revealed multiple antibiotic resistance and virulence genes. These findings support the decision to recall the contaminated powdered and dairy formulas from the Chilean market in 2017.

The southern king crab, Lithodes santolla, is an important fishery resource in the inner seas of Chilean Patagonia. The fishing gear used to catch southern king crab (bait trap) and its operation at different depths over several months provide the opportunity to gather information about relative abundance. The aim of the present study was to analyze the information collected from the catches of southern king crab and its associated fauna in the Magdalena Fjord to study the biodiversity and ecology of scavenging decapod crustaceans. Specifically, the study aimed to determine the bathymetric patterns of abundance by species, to model the abundance by season (winter and spring) and to determine the structuring pattern of scavenging decapods assemblage. Samples were collected between June and November 2019 by deploying traps in four bathymetric strata: 1 = 0–50 m; 2 = 51–100 m; 3 =101–150 m; 4 = 151–200 m. We registered a total of 673 decapod specimens associated with the southern king crab fishery, representing five species: Lithodes santolla (n = 96), Libidoclaea smithii (n = 10), Metacarcinus edwardsii (n = 58), Munida gregaria (n = 507) and Peltarion spinulosum (n = 2). The abundance of decapod species varied by month and bathymetric strata. We found bathymetric patterns for L. santolla abundance, M. gregaria, M. edwardsii, and total species abundance. The most informative model to explain scavenging decapod abundance by generalized linear model (GLM) included species and season. The null model of species co-occurrence analysis revealed that all species associations during the sampled months were random. Our study is the first that provides evidence about patterns of bathymetrical and temporal variation of scavenging decapod abundance and expands the body of knowledge regarding the biodiversity of scavenger decapods in the Magdalena Sound.

Ready-to-eat (RTE) artisanal foods are very popular, but they can be contaminated by Listeria monocytogenes. The aim was to determine the presence of L. monocytogenes in artisanal RTE foods and evaluate its food safety risk. We analyzed 400 RTE artisanal food samples requiring minimal (fresh products manufactured by a primary producer) or moderate processing (culinary products for sale from the home, restaurants such as small cafés, or on the street). Listeria monocytogenes was isolated according to the ISO 11290-1:2017 standard, detected with VIDAS equipment, and identified by real-time polymerase chain reaction (PCR). A small subset (n = 8) of the strains were further characterized for evaluation. The antibiotic resistance profile was determined by the CLSI methodology, and the virulence genes hlyA, prfA, and inlA were detected by PCR. Genotyping was performed by pulsed-field gel electrophoresis (PFGE). Listeria monocytogenes was detected in 7.5% of RTE artisanal foods. On the basis of food type, positivity in minimally processed artisanal foods was 11.6%, significantly different from moderately processed foods with 6.2% positivity (p > 0.05). All the L. monocytogenes strains (n = 8) amplified the three virulence genes, while six strains exhibited premature stop codons (PMSC) in the inlA gene; two strains were resistant to ampicillin and one strain was resistant to sulfamethoxazole-trimethoprim. Seven strains were 1/2a serotype and one was a 4b strain. The sampled RTE artisanal foods did not meet the microbiological criteria for L. monocytogenes according to the Chilean Food Sanitary Regulations. The presence of virulence factors and antibiotic-resistant strains make the consumption of RTE artisanal foods a risk for the hypersensitive population that consumes them.

In this study we evaluated if zebrafish larvae can be colonized by human gut microorganisms. We tested two strategies: (1) through transplantation of a human fecal microbiota and (2) by successively transplanting aerotolerant anaerobic microorganisms, similar to the colonization in the human intestine during early life. We used conventionally raised zebrafish larvae harboring their own aerobic microbiota to improve the colonization of anaerobic microorganisms. The results showed with the fecal transplant, that some members of the human gut microbiota were transferred to larvae. Bacillus, Roseburia, Prevotella, Oscillospira, one unclassified genus of the family Ruminococcaceae and Enterobacteriaceae were detected in 3 days post fertilization (dpf) larvae; however only Bacillus persisted to 7 dpf. Successive inoculation of Lactobacillus, Bifidobacterium and Clostridioides did not improve their colonization, compared to individual inoculation of each bacterial species. Interestingly, the sporulating bacteria Bacillus clausii and Clostridioides difficile were the most persistent microorganisms. Their endospores persisted at least 5 days after inoculating 3 dpf larvae. However, when 5 dpf larvae were inoculated, the proportion of vegetative cells in larvae increased, revealing proliferation of the inoculated bacteria and better colonization of the host. In conclusion, these results suggest that it is feasible to colonize zebrafish larvae with some human bacteria, such as C. difficile and Bacillus and open an interesting area to study interactions between these microorganisms and the host.

The aims of this study were to determine the occurrence of Listeria monocytogenes in cattle feces and ground beef, to characterize these strains by pulsed-field gel electrophoresis and to compare them to three listeria strains found in humans. Cattle from different origins (n = 250) and ground beef obtained from supermarkets (n = 40) were sampled. The results show low occurrence in cattle feces (0.4 %) but a higher presence in ground beef (37 %). An important part of the ground beef strains (80 %) had > 95 % similarity with a strain isolated from a human sporadic case and the ATCC 19115 used as control. The strain isolated from cattle feces had 93 % similarity to clone 009, previously associated with a listeriosis outbreak related to cheese. Cattle and ground beef can harbor virulent L. monocytogenes strains. Further studies in animals and animal products are needed to improve listeriosis control.Los objetivos de este estudio fueron determinar la presencia de Listeria monocytogenes en el ganado y en la carne molida de vacuno comercializada en Chile, caracterizar los aislados mediante electroforesis de campo pulsado y compararlos con los obtenidos en tres cepas que han producido listeriosis en humanos, en ese país. Se tomaron muestras de heces de bovinos (n = 250) y de carne molida obtenida en supermercados (n = 40). Se encontró una baja incidencia de este patógeno en las heces de bovinos (0,4 %; un solo animal), pero mayores porcentajes en la carne molida (37 %). Gran parte de las cepas encontradas en la carne molida (80 %) mostraron una similitud mayor del 95 % con un caso esporádico de listeriosis y con la cepa de referencia ATCC 19115. La cepa aislada de bovino tuvo un 93 % de similitud con el clon 009, responsable de un brote asociado al consumo de queso, ocurrido en 2008. Se concluye que el ganado y la carne molida pueden albergar cepas virulentas de L. monocytogenes. Se necesita un mayor número de estudios en animales y en los productos que se obtienen de ellos para mejorar el control de la listeriosis.

The relationship between asymptomatic shedding of bacterial enteropathogens and the hygiene habits of families who have had a child with typhoid fever (TF) are investigated. The sample was made up of 80 families: 40 families in which one child had had TF (Group A) and 40 in which no children or either of the parents had had a history of TF (Group B). In each group 20 families belonged to a low socieconomic status (SES) and 20 to a high SES. A structured interview was used to evaluate the SES and the hygiene habits of the child; observations were made to measure the hygiene habits of the family (toilet, kitchen and food preparation) and bacteriological studies (fecal samples and hand markers). Results show that carriers were more frequent in Group A than in Group B. The bacterial species found were significantly more numerous in Group A than in Group B (fecal samples: E. coli, the classic serotypes, Shigella ssp, and hand markers: E. coli). Families of Group A had higher carriage rates than those of Group B. Finally there exists a significantly higher association between inadequate hygiene habits and carrier families. These results show the need to teach specific habits of proper hygiene to the entire population, because the fact of belonging to the high SES does not in itself preclude inadequate hygiene habits.El objetivo de este estudio fue investigar las relaciones entre la presencia de portadores de agentes bacteriales enteropatógenos y la calidad de los hábitos de higiene en familias que han tenido o no un niño con fiebre tifoídea (TF). La muestra estuvo formada por 80 familias: 40 en las que hubo un niño con FT (grupo A) y 40 en las que ni los niños y sus padres habían tenido una historia de FT (grupo B). En cada grupo 20 familias pertenecían al nivel socieconómico bajo (NSE) y 20 al NSE alto. Se usó una entrevista estructurada para evaluar el NSE, los hábitos de higiene del niño; observaciones estructuradas para medir los hábitos de higiene de la familia (baño, cocina y preparación de alimentos) y estudios bacteriológicos (muestras fecales y marcadores de mano). Los resultados señalan que los portadores fueron más frecuentes en el grupo A que en el B. Las especies bacterianas fueron significativamente más en el grupo A que en el B (muestras fecales: E. coli, serotipos clásicos, Shigella ssp, y marcadores de mano: E. coli). Las familias del grupo A tenían tasas más altas de portación que aquellas del grupo B. Finalmente existe una asociaión significativamente alta entre los hábitos inadecuados de higiene y las familias portadoras. Estos resultados muestran la necesidad de enseñar hábitos específicos de higiene adecuada a toda la población, porque el solo hecho de pertenecer al NSE alto no previene los hábitos de higiene inadecuados.Objetivou-se estudar a relação entre qualidade dos hábitos de higiene e presença de portadores de agentes bacterianos enteropatogenos, em famílias que tiveram ou não, uma criança com febre tifóide (FT). A amostra esteve constituída por 80 famílias: 40 com a presença , em cada uma, de uma criança com FT (Grupo A) e 40 em que nem as crianças e seus pais nunca tiveram história de FT (Grupo B). Em cada grupo, 20 famílias pertenciam ao nível socioeconômico (NSE) baixo e 20 ao NSE alto. Para avaliar o NSE e os hábitos de higiene da criança foi utilizada entrevista estruturada; para medir os hábitos higiênicos da família (banho, cozinha e preparo dos alimentos) foram utilizadas observações estruturadas; e os estudos bacteriológicos foram realizados em amostras de fezes e marcadores de mão. Os resultados mostraram que no grupo A houve maior freqüência de portadores que no B. As espécies bacterianas foram significativamente mais freqüentes no Grupo A que no B (nas fezes: E. coli, serotipos clássicos, Shigella ssp; e em marcadores de mão: E. coli). As famílias do grupo A tiveram taxas altas de microorganismos que as do grupo B. Foi encontrada associação significativamente alta entre hábitos inadequados de higiene e as famílias portadoras. Os resultados mostraram a necessidade de ensinar hábitos específicos de higiene adequada a toda a população, pois somente o fato de pertencer ao NSE alto não previne os hábitos de higiene inadequados.