86 results on '"Gunay Z. Mammadova"'
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2. Crystal structure of [1,3-bis(2,4,6-trimethylphenyl)imidazolidin-2-ylidene]dichlorido(2-{[(2-methoxyethyl)(methyl)amino]methyl}benzylidene)ruthenium
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Gunay Z. Mammadova, Zeliha Atioğlu, Mehmet Akkurt, Mikhail S. Grigoriev, Nikita S. Volchkov, Asmet N. Azizova, Ajaya Bhattarai, and Alexandra S. Antonova
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crystal structure ,ruthenium catalyst ,hoveyda–grubbs catalyst ,olefin metathesis ,Crystallography ,QD901-999 - Abstract
The title compound, [RuCl2(C33H43N3O)], is an example of a new generation of N,N-dialkyl ruthenium catalysts with an N—Ru coordination bond as part of a six-membered chelate ring. The Ru atom has an Addison τ parameter of 0.244, which indicates a geometry intermediate between square-based pyramidal and trigonal–bipyramidal. The complex shows the usual trans arrangement of the two chlorides, with Ru—Cl bond lengths of 2.3515 (8) and 2.379 (7) Å, and a Cl—Ru—Cl angle of 158.02 (3)°. One of the chlorine atoms and the atoms of the 2-methoxy-N-methyl-N-[(2-methylphenyl)methyl]ethane-1-amine group of the title complex display disorder over two positions in a 0.889 (2): 0.111 (2) ratio.
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- 2024
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3. Crystal structure and Hirshfeld surface analysis of 10-hydroxy-2-(4-methoxyphenyl)-3-oxo-2,3,3a,4,10,10a-hexahydro-1H-9-thia-2-azacyclopenta[b]fluorene-4-carboxylic acid dimethyl sulfoxide-d6 monosolvate
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Gunay Z. Mammadova, Elizaveta D. Yakovleva, Pavel P. Erokhin, Mikhail S. Grigoriev, Zeliha Atioğlu, Asmet N. Azizova, Mehmet Akkurt, and Ajaya Bhattarai
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crystal structure ,disorder ,dimer ,hydrogen bonds ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C22H19NO5S·C2D6OS, the central six-membered ring has a slightly distorted boat conformation, while the fused pyrrolidine ring adopts an envelope conformation. These conformations are stabilized by O—H...O hydrogen bonds between the main compound and solvent molecules. In addition, intramolecular C—H...O hydrogen bonds in the main molecule form two S(6) rings. Molecules are connected by pairs of intermolecular C—H...O hydrogen bonds, forming dimers with a R22(8) motif. These dimers form a three-dimensional network through O—H...O, O—H...S and C—H...O hydrogen bonds with each other directly and through solvent molecules. In addition, weak π–π stacking interactions [centroid-to-centroid distances = 3.9937 (10) and 3.9936 (10) Å, slippages of 2.034 and 1.681 Å] are observed. The intermolecular contacts were quantified using Hirshfeld surface analysis and two-dimensional fingerprint plots, revealing the relative contributions of the contacts to the crystal packing to be H...H 41.7%, O...H/H...O 27.7%, C...H/H...C 17.0%, and S...H/H...S 7.5%.
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- 2023
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4. Synthesis, crystal structure and Hirshfeld surface analysis of 5-[2-(dicyanomethylidene)hydrazin-1-yl]-2,4,6-triiodoisophthalic acid ethanol monosolvate
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Fargana S. Aliyeva, Gunay Z. Mammadova, Mehmet Akkurt, Sevim Türktekin Çelikesir, and Ajaya Bhattarai
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crystal structure ,hydrogen bonds ,three dimensional network ,c—i...π interactions ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
The title compound, C11H3I3N4O4·C2H6O, crystallizes in the triclinic P\overline{1} space group with one independent molecule and one ethanol solvent molecule in the asymmetric unit. The benzene ring and the methylcarbonohydrazonoyl dicyanide group of the main molecule makes a dihedral angle of 57.91 (16)°. In the crystal, O—H...O and N—H...O hydrogen bonds link pairs of molecules, forming dimers with R22(14) motifs. These dimers are connected by O—H...O hydrogen bonds into chains along the a-axis direction, forming R22(16) ring motifs. Further O—H...O interactions involving the ethanol solvent molecule connect the chains into a three-dimensional network. In addition, C—I...π interactions are observed. The intermolecular interactions in the crystal structure were quantified and analysed using Hirshfeld surface analysis.
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- 2023
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5. Crystal structures and Hirshfeld surface analyses of N,N-dimethylacetamide–1-(dimethyl-λ4-azanylidene)ethan-1-ol tribromide (1/1), N,N-dimethylacetamide–1-(dimethyl-λ4-azanylidene)ethan-1-ol dibromidoiodate (1/1) and N,N-dimethylacetamide–1-(dimethyl-λ4-azanylidene)ethan-1-ol dichloridoiodate (1/1)
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Gunay Z. Mammadova, Dmitriy F. Mertsalov, Dmitriy M. Shchevnikov, Mikhail S. Grigoriev, Mehmet Akkurt, Sema Öztürk Yıldırım, and Ajaya Bhattarai
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crystal structure ,dimethylacetamide ,trihalide ,hydrogen bond ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compounds, N,N-dimethylacetamide–1-(dimethyl-λ4-azanylidene)ethan-1-ol tribromide (1/1), C4H9NO·C4H10NO+·Br3− or [(C4H9NO)·(C4H10NO)](Br3), (I), N,N-dimethylacetamide–1-(dimethyl-λ4-azanylidene)ethan-1-ol dibromidoiodate (1/1), C4H9NO·C4H10NO+·Br2I− or [(C4H9NO)·(C4H10NO)](Br2I), (II), and N,N-dimethylacetamide–1-(dimethyl-λ4-azanylidene)ethan-1-ol dichloridoiodate (1/1), C4H9NO·C4H10NO+·Cl2I− or [(C4H9NO)·(C4H10NO)]·(Cl2I), (III), all the anions are almost linear in geometry and all the cations, except for the methyl H atoms, are essentially planar. In the crystal structure of (I), the cations are linked by pairs of C—H...O hydrogen bonds, forming inversion dimers with an R22(8) ring motif. These dimers also exhibit O—H...O hydrogen bonding. Dimerized cation pairs and anions are arranged in columns along the a axis. In the crystal of (II), the cations are linked by pairs of O—H...O and C—H...O hydrogen bonds, forming an R44(14) ring motif. These groups of cations and the anions form individual columns along the a axis and jointly reside in planes roughly parallel to (011). In the crystal of (III), cations and anions also form columns parallel to the a axis, resulting in layers parallel to the (020) plane. Furthermore, the crystal structures of (I), (II) and (III) are consolidated by strong halogen (Br and/or I and/or Cl)...H and weak van der Waals interactions. In addition to the structural evaluation, a Hirshfeld surface analysis was carried out.
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- 2023
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6. Crystal structure and Hirshfeld surface analysis of 4-cyano-N-[(4-cyanophenyl)sulfonyl]-N-[2-(5-methylfuran-2-yl)phenyl]benzenesulfonamide
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Gunay Z. Mammadova, Elizaveta D. Yakovleva, Gleb M. Burkin, Victor N. Khrustalev, Mehmet Akkurt, Sevim Türktekin Çelikesir, and Ajaya Bhattarai
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crystal structure ,sulfonamides ,hydrogen bonds ,c—h...π interactions ,π–π interactions ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C25H17N3O5S2, intramolecular π–π interactions [centroid-to-centroid distance = 3.5640 (9) Å] are observed between the furan and benzene rings of the 4-cyanophenyl group. In the crystal, molecules are connected via C—H...O and C—H...N hydrogen bonds, forming layers parallel to the (100) plane. These layers are interconnected by C—H...π interactions and weak van der Waals interactions. Hirshfeld surface analysis indicates that H...H (30.2%), N...H/H...N (22.3%), C...H/H...C (17.9%) and O...H/H...O (15.4%) interactions make the most significant contributions to the crystal packing.
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- 2023
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7. Crystal structure and Hirshfeld surface analysis of bis{(Z)-N′-[(E)-(furan-2-yl)methylidene]carbamohydrazonothioato}nickel(II) methanol disolvate
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Asmet N. Azizova, Gunay Z. Mammadova, Sevim Türktekin Çelikesir, Mehmet Akkurt, and Ajaya Bhattarai
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crystal structure ,ligands ,distorted square-planar geometry ,hydrogen bonds ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title complex, [Ni(C6H6N3OS)2]·2CH3OH, the NiII atom is coordinated by the S and N atoms of two N′-[(Z)-(furan-2-yl)methylidene]carbamohydrazonothioic acid ligands in a distorted square-planar geometry. The two mutual ligands bound to NiII are also connected by C—H...S interactions, while the H atoms of the NH2 group of the ligands form R44(8) motifs with the O atoms of the solvent ethyl alcohol molecules. At the same time, the OH groups of the solvent ethyl alcohol molecules form parallel layers to the (011) plane by the O—H...N interactions with the ligand N atom that is not bonded to the NiII atom.. The layers are connected by van der Waals interactions. A Hirshfeld surface analysis indicates that the most important contacts are H...H (37.7%), C...H/H...C (14.6%), O...H/H...O (11.5%) and S...H/H...S (10.6%).
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- 2023
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8. Crystal structure and Hirshfeld surface analysis of N-[2-(5-methylfuran-2-yl)phenyl]-3-nitro-N-[(3-nitrophenyl)sulfonyl]benzenesulfonamide
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Gunay Z. Mammadova, Selbi Annadurdyyeva, Gleb M. Burkin, Victor N. Khrustalev, Mehmet Akkurt, Sema Öztürk Yıldırım, and Ajaya Bhattarai
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crystal structure ,sulfonamides ,hydrogen bonds ,π–π stacking interactions ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C23H17N3O9S2, C—H...O hydrogen bonds link adjacent molecules in a three-dimensional network, while π–π stacking interactions, with centroid–centroid distances of 3.8745 (9) Å, between the furan and an arene ring of one of the two (3-nitrophenyl)sulfonyl groups, result in chains parallel to the a axis. The Hirshfeld surface analysis indicates that O...H/H...O (40.1%), H...H (27.5%) and C...H/H...C (12.4%) interactions are the most significant contributors to the crystal packing.
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- 2023
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9. Crystal structure and Hirshfeld surface analysis of (3aSR,6RS,6aSR,7RS,11bSR,11cRS)-2,2-dibenzyl-2,3,6a,11c-tetrahydro-1H,6H,7H-3a,6:7,11b-diepoxydibenzo[de,h]isoquinolin-2-ium trifluoromethanesulfonate
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Zeliha Atioğlu, Mehmet Akkurt, Gunay Z. Mammadova, and Sixberth Mlowe
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crystal structure ,tetrahydrofuran ring ,piperidine ring ,c—h...o hydrogen bonds ,hirshfeld surface analysis ,imdaf reaction ,diels–alder reaction ,Crystallography ,QD901-999 - Abstract
In the cation of the title salt, C30H28NO2+·CF3O3S−, the four tetrahydrofuran rings adopt envelope conformations. In the crystal, pairs of cations are linked by dimeric C—H...O hydrogen bonds, forming two R22(6) ring motifs parallel to the (001) plane. The cations and anions are connected by further C—H...O hydrogen bonds, forming a three-dimensional network structure. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H...H (47.6%), C...H/H...C (20.6%), O...H/H...O (18.0%) and F...H/H...F (9.9%) interactions.
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- 2021
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10. Crystal structure and Hirshfeld surface analysis of dimethyl 5-[2-(2,4,6-trioxo-1,3-diazinan-5-ylidene)hydrazin-1-yl]benzene-1,3-dicarboxylate 0.224-hydrate
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Zeliha Atioğlu, Mehmet Akkurt, Gunay Z. Mammadova, Fatali E. Huseynov, Sevinj R. Hajiyeva, Nazim T. Shamilov, and Ajaya Bhattarai
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crystal structure ,1,3-diazinane ring ,hydrogen bonds ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the crystal, the whole molecule of the title compound, C14H12N4O7·0.224H2O, is nearly planar with a maximum deviation from the least-squares plane of 0.352 (1) Å. The molecular conformation is stabilized by an intramolecular N—H...O hydrogen bond, generating an S(6) ring motif. In the crystal, molecules are linked by centrosymmetric pairs of N—H...O hydrogen bonds, forming ribbons along the c-axis direction. These ribbons connected by van der Waals contacts, forming sheets parallel to the ac plane. There are also intermolecular van der Waals contacts and and C—H...π interactions between the sheets. A Hirshfeld surface analysis indicates that the most prevalent interactions are O...H/H...O (41.2%), H...H (19.2%), C...H/H...C (12.2%) and C...O/ O...C (8.4%).
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- 2021
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11. Crystal structure and Hirshfeld surface analysis of 5,7-diphenyl-1,2,3,5,6,7-hexahydroimidazo[1,2-a]pyridine-6,6,8-tricarbonitrile methanol monosolvate
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Farid N. Naghiyev, Gunay Z. Mammadova, Ali N. Khalilov, Zeliha Atioğlu, Mehmet Akkurt, Anzurat A. Akobirshoeva, and İbrahim G. Mamedov
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crystal structure ,imidazolidine ring ,pyridine ring ,hydrogen bond ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C22H17N5·CH4O, the imidazolidine ring of the 1,2,3,5,6,7-hexahydroimidazo[1,2-a]pyridine ring system is a twisted envelope, while the 1,2,3,4-tetrahydropyridine ring adopts a twisted boat conformation. In the crystal, pairs of molecules are linked by O—H...N and N—H...O hydrogen bonds via two methanol molecules, forming a centrosymmetric R44(16) ring motif. These motifs are connected to each other by C—H...N hydrogen bonds and form columns along the a axis. The columns form a stable molecular packing, being connected to each other by van der Waals interactions. A Hirshfeld surface analysis indicates that the most significant contributions to the crystal packing are from H...H (43.8%), N...H/H...N (31.7%) and C...H/H...C (18.4%) contacts.
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- 2021
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12. Crystal structure and Hirshfeld surface analysis of (E)-3-[(4-methylbenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide N,N-dimethylformamide monosolvate
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Gulnara Sh. Duruskari, Ali N. Khalilov, Gunay Z. Mammadova, Sevim Türktekin Çelikesir, Mehmet Akkurt, Anzurat A. Akobirshoeva, and Abel M. Maharramov
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crystal structure ,thiazolidine ,envelope conformation ,n,n-dimethylformamide ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the cation of the title salt, C17H18N3S+·Br−·C3H7NO, the central thiazolidine ring adopts an envelope conformation with puckering parameters Q(2) = 0.310 (3) Å and φ(2) = 42.2 (6)°. In the crystal, each cation is connected to two anions by N—H... Br hydrogen bonds, forming an R42(8) motif parallel to the (10\overline{1}) plane. van der Waals interactions between the cations, anions and N,N-dimethylformamide molecules further stabilize the crystal structure in three dimensions. The most important contributions to the surface contacts are from H...H (55.6%), C...H/H...C (17.9%) and Br...H/H...Br (7.0%) interactions, as concluded from a Hirshfeld analysis.
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- 2020
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13. Crystal structure and Hirshfeld surface analysis of phenyl(5,7,8a-triphenyl-1,2,3,7,8,8a-hexahydroimidazo[1,2-a]pyridin-6-yl)methanone with an unknown solvent
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Farid N. Naghiyev, Gunay Z. Mammadova, Ibrahim G. Mamedov, Afet T. Huseynova, Sevim Türktekin Çelikesir, Mehmet Akkurt, and Anzurat A. Akobirshoeva
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crystal structure ,cycloaddition products ,hexahydroimidazo[1,2-a]pyridine ring ,squeeze ,Crystallography ,QD901-999 - Abstract
In the title compound, C32H28N2O, the imidazolidine and pyridine rings of the central hexahydroimidazo[1,2-a]pyridine ring system adopt envelope and screw-boat conformations, respectively. The molecule exhibits two weak intramolecular π–π interactions between phenyl rings. In the crystal, molecules are linked via pairs of C—H... O hydrogen bonds, forming inversion dimers. The dimers are further linked by pairs of C—H...π interactions, forming infinite chains along the c-axis direction. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H...H (73.4%), C...H/H...C (18.8%) and O...H/H...O (5.7%) contacts. The contribution of some disordered solvent to the scattering was removed using the SQUEEZE routine [Spek (2015). Acta Cryst. C71, 9–18] in PLATON. The solvent contribution was not included in the reported molecular weight and density.
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- 2020
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14. (E)-1-(2,6-Dichlorophenyl)-2-(3-nitrobenzylidene)hydrazine: crystal structure and Hirshfeld surface analysis
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Zeliha Atioğlu, Mehmet Akkurt, Namiq Q. Shikhaliyev, Gulnar T. Suleymanova, Gulnare V. Babayeva, Nurana V. Gurbanova, Gunay Z. Mammadova, and Sixberth Mlowe
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crystal structure ,isomer ,2,6-dichlorophenyl ring ,3-nitrobenzylidene ring ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
The stabilized conformation of the title compound, C13H9Cl2N3O2, is similar to that of the isomeric compound (E)-1-(2,6-dichlorophenyl)-2-(2-nitrobenzylidene)hydrazine. The 2,6-dichlorophenyl ring and the nitro-substituted benzene ring form a dihedral angle of 26.25 (16)°. In the crystal, face-to-face π-π stacking interactions along the a-axis direction occur between the centroids of the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring. The molecules are further linked by C—H...O contacts and N—H...O and C—H...Cl hydrogen bonds, forming pairs of hydrogen-bonded molecular layers parallel to (100). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H...H (22.1%), Cl...H/H...Cl (20.5%), O...H/H...O (19.7%), C...C (11.1%) and C...H/H...C (8.3%) interactions.
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- 2020
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15. Crystal structure and Hirshfeld surface analysis of (E)-4-{2,2-dichloro-1-[(3,5-dimethylphenyl)diazenyl]ethenyl}-N,N-dimethylaniline
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Kadriye Özkaraca, Mehmet Akkurt, Namiq Q. Shikhaliyev, Ulviyya F. Askerova, Gulnar T. Suleymanova, Gunay Z. Mammadova, and Daniel M. Shadrack
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crystal structure ,cl...cl halogen bonds ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C18H19Cl2N3, the planes of the benzene rings subtend a dihedral angle of 77.07 (10)°. In the crystal, molecules are associated into inversion dimers via short Cl...Cl contacts [3.3763 (9) Å]. A Hirshfeld surface analysis indicates that the most important contact percentages for the different types of interactions are H...H (43.9%), Cl...H/H...Cl (22.9%), C...H/H...C (20.8%) and N...H/H...N (8.0%).
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- 2020
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16. Crystal structure and Hirshfeld surface analysis of (E)-1-(2,6-dichlorophenyl)-2-(2-nitrobenzylidene)hydrazine
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Sevim Türktekin Çelikesir, Mehmet Akkurt, Namiq Q. Shikhaliyev, Gulnar T. Suleymanova, Gulnare V. Babayeva, Nurana V. Gurbanova, Gunay Z. Mammadova, and Ajaya Bhattarai
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crystal structure ,face-to-face π–π stacking interactions ,2,6-dichlorophenyl ring ,nitro-substituted benzene ring ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C13H9Cl2N3O2, the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring form a dihedral angle of 21.16 (14)°. In the crystal, face-to-face π–π stacking interactions occur along the a-axis direction between the centroids of the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring. Furthermore, these molecules show intramolecular N—H...Cl and C—H...O contacts and are linked by intermolecular N—H...O and C—H...Cl hydrogen bonds, forming pairs of hydrogen-bonded molecular layers parallel to (20\overline{2}). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H...H (23.0%), O...H/H...O (20.1%), Cl...H/H...Cl (19.0%), C...C (11.2%) and H...C/C...H (8.0%) interactions.
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- 2020
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17. Crystal structure and Hirshfeld surface analysis of 4-{2,2-dichloro-1-[(E)-2-(4-methylphenyl)diazen-1-yl]ethenyl}-N,N-dimethylaniline
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Kadriye Özkaraca, Mehmet Akkurt, Namiq Q. Shikhaliyev, Ulviyya F. Askerova, Gulnar T. Suleymanova, Gunay Z. Mammadova, and Sixberth Mlowe
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crystal structure ,hirshfeld surface analysis ,non-covalent interactions ,halogen and h-atom contacts ,Crystallography ,QD901-999 - Abstract
In the tile compound, C17H17Cl2N3, the dihedral angle between the benzene rings is 62.73 (9)°. In the crystal, there are no classical hydrogen bonds. Molecules are linked by a pair of C—Cl...π interactions, forming an inversion dimer. A short intermolecular HL...HL contact [Cl...Cl = 3.2555 (9) Å] links the dimers, forming a ribbon along the c-axis direction. The Hirshfeld surface analysis and two-dimensional fingerprint plots reveal that the most important contributions for the crystal packing are from H...H (45.4%), Cl...H/H...Cl (21.0%) and C...H/H...C (19.0%) contacts.
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- 2020
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18. Crystal structure and Hirshfeld surface analysis of (E)-3-(benzylideneamino)-5-phenylthiazolidin-2-iminium bromide
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Gulnara Sh. Duruskari, Mehmet Akkurt, Gunay Z. Mammadova, Taras Chyrka, and Abel M. Maharramov
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crystal structure ,charge assisted hydrogen bonding ,thiazolidine ring ,envelope conformation ,hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
The central thiazolidine ring of the title salt, C16H16N3S+·Br−, adopts an envelope conformation, with the C atom bearing the phenyl ring as the flap atom. In the crystal, the cations and anions are linked by N—H...Br hydrogen bonds, forming chains parallel to the b-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H...H (46.4%), C...H/H...C (18.6%) and H...Br/Br...H (17.5%) interactions.
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- 2020
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19. Crystal structure and Hirshfeld surface analysis of 3-amino-5-phenylthiazolidin-2-iminium bromide
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Gulnara Sh. Duruskari, Ali N. Khalilov, Mehmet Akkurt, Gunay Z. Mammadova, Taras Chyrka, and Abel M. Maharramov
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crystal structure ,charge-assisted hydrogen bonding ,thiazolidine ring ,Hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the cation of the title salt, C9H12N3S+·Br−, the thiazolidine ring adopts an envelope conformation with the C atom adjacent to the phenyl ring as the flap. In the crystal, N—H...Br hydrogen bonds link the components into a three-dimensional network. Weak π–π stacking interactions between the phenyl rings of adjacent cations also contribute to the molecular packing. A Hirshfeld surface analysis was conducted to quantify the contributions of the different intermolecular interactions and contacts.
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- 2019
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20. Crystal structure and Hirshfeld surface analysis of (E)-3-[(4-chlorobenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide
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Gulnara Sh. Duruskari, Ali N. Khalilov, Mehmet Akkurt, Gunay Z. Mammadova, Taras Chyrka, and Abel M. Maharramov
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crystal structure ,isotypic ,charge-assisted hydrogen bonding ,thiazolidine ring ,disorder ,Hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
The title salt, C16H15ClN3S+·Br−, is isotypic with (E)-3-[(4-fluorobenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide [Khalilov et al. (2019). Acta Cryst. E75, 662–666]. In the cation of the title salt, the atoms of the phenyl ring attached to the central thiazolidine ring and the atom joining the thiazolidine ring to the benzene ring are disordered over two sets of sites with occupancies of 0.570 (3) and 0.430 (3). The major and minor components of the disordered thiazolidine ring adopt slightly distorted envelope conformations, with the C atom bearing the phenyl ring as the flap atom. In the crystal, centrosymmetrically related cations and anions are linked into dimeric units via N—H...Br hydrogen bonds, which are further connected by weak C—H...Br contacts into chains parallel to the a axis. Furthermore, not existing in the earlier report of (E)-3-[(4-fluorobenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide, C—H...π interactions and π–π stacking interactions [centroid-to-centroid distance = 3.897 (2) Å] between the major components of the disordered phenyl ring contribute to the stabilization of the molecular packing. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions for the crystal packing are from H...H (30.5%), Br...H/H...Br (21.2%), C...H/H...C (19.2%), Cl...H/H...Cl (13.0%) and S...H/H...S (5.0%) interactions.
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- 2019
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21. Crystal structure and Hirshfeld surface analysis of (E)-4-{[2,2-dichloro-1-(4-methoxyphenyl)ethenyl]diazenyl}benzonitrile
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Mehmet Akkurt, Namiq Q. Shikhaliyev, Ulviyya F. Askerova, Sevinc H. Mukhtarova, Gunay Z. Mammadova, and Flavien A. A. Toze
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crystal structure ,4-methoxyphenyl ring ,benzonitrile ,face-to-face π–π stacking interactions ,Hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the title compound, C16H11Cl2N3O, the 4-methoxy-substituted benzene ring makes a dihedral angle of 41.86 (9)° with the benzene ring of the benzonitrile group. In the crystal, molecules are linked into layers parallel to (020) by C—H...O contacts and face-to-face π–π stacking interactions [centroid–centroid distances = 3.9116 (14) and 3.9118 (14) Å] between symmetry-related aromatic rings along the a-axis direction. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from Cl...H/H...Cl (22.8%), H...H (21.4%), N...H/H...N (16.1%), C...H/H...C (14.7%) and C...C (9.1%) interactions.
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- 2019
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22. Crystal structures and Hirshfeld surface analyses of the two isotypic compounds (E)-1-(4-bromophenyl)-2-[2,2-dichloro-1-(4-nitrophenyl)ethenyl]diazene and (E)-1-(4-chlorophenyl)-2-[2,2-dichloro-1-(4-nitrophenyl)ethenyl]diazene
- Author
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Mehmet Akkurt, Namiq Q. Shikhaliyev, Gulnar T. Suleymanova, Gulnare V. Babayeva, Gunay Z. Mammadova, Ayten A. Niyazova, Irada M. Shikhaliyeva, and Flavien A. A. Toze
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crystal structure ,diazene derivatives ,dyes ,intermolecular halogen bonds ,Hirshfeld surface analysis ,Crystallography ,QD901-999 - Abstract
In the two isotypic title compounds, C14H8BrCl2N3O2, (I), and C14H8Cl3N3O2, (II), the substitution of one of the phenyl rings is different [Br for (I) and Cl for (II)]. Aromatic rings form dihedral angles of 60.9 (2) and 64.1 (2)°, respectively. Molecules are linked through weak X...Cl contacts [X = Br for (I) and Cl for (II)], C—H...Cl and C—Cl...π interactions into sheets parallel to the ab plane. Additional van der Waals interactions consolidate the three-dimensional packing. Hirshfeld surface analysis of the crystal structures indicates that the most important contributions for the crystal packing for (I) are from C...H/H...C (16.1%), O...H/H...O (13.1%), Cl...H/H...Cl (12.7%), H...H (11.4%), Br...H/H...Br (8.9%), N...H/H...N (6.9%) and Cl...C/C...Cl (6.6%) interactions, and for (II), from Cl...H / H...Cl (21.9%), C...H/H...C (15.3%), O...H/H...O (13.4%), H...H (11.5%), Cl...C/C...Cl (8.3%), N...H/H...N (7.0%) and Cl...Cl (5.9%) interactions. The crystal of (I) studied was refined as an inversion twin, the ratio of components being 0.9917 (12):0.0083 (12).
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- 2019
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23. Synthesis, characterization and antibacterial studies of dichlorodiazadienes
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Namig G. Shikhaliyev, Gulnar T. Suleymanova, Aygun. A. İsrayilova, Khudaverdi. G. Ganbarov, Gulnara V. Babayeva, Khatira. A. Garazadeh, Gunay Z. Mammadova, and Valentine G. Nenajdenko
- Subjects
Organic chemistry ,QD241-441 - Published
- 2019
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24. Crystal structure and Hirshfeld surface analysis of 3,3′,3′′-[(1,3,5-triazine-2,4,6-triyl)tris(oxy)]tris(5,5-dimethylcyclohex-2-en-1-one)
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Zeliha Atioğlu, Mehmet Akkurt, Flavien A. A. Toze, Gunay Z. Mammadova, and Humay M. Panahova
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crystal structure ,1,3,5-triazine ring ,cyclohexenone ring ,distorted envelope conformation ,hydrogen bonding ,Crystallography ,QD901-999 - Abstract
The three cyclohexenone rings of the title compound, C27H33N3O6, adopt slightly distorted envelope conformations, with the C atom bearing two methyl groups as the flap atom in each case. These cyclohexenone mean planes form dihedral angles of 87.41 (11), 70.73 (11) and 70.47 (11)° with the 1,3,5-triazine ring, while the dihedral angle between the cyclohexenone mean planes are 57.52 (12), 23.75 (12) and 53.21 (12)°. In the crystal, molecules are linked via C—H...O hydrogen bonds, forming a three-dimensional network.
- Published
- 2018
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25. (1Z,2Z)-1,2-Bis{2-[3,5-bis(trifluoromethyl)phenyl]hydrazinylidene}-1,2-bis(4-methoxyphenyl)ethane including an unknown solvate
- Author
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Mehmet Akkurt, Namiq Q. Shikhaliyev, Ulviyya F. Askerova, Sevinc H. Mukhtarova, Gunay Z. Mammadova, and Flavien A. A. Toze
- Subjects
crystal structure ,–CF3 groups ,hydrogen bonding ,disorder ,Crystallography ,QD901-999 - Abstract
The complete molecule of the title compound, C32H22F12N4O2, is generated by a crystallographic twofold axis aligned parallel to [010]. The F atoms of one of the CF3 groups are disordered over three orientations in a 0.6: 0.2: 0.2 ratio. In the crystal, molecules are linked by N—H...O hydrogen bonds, forming zigzag chains propagating along the a-axis direction. In addition, weak C—H...O and C—H...F bonds are observed. The contribution of the disordered solvent to the scattering was removed using the SQUEEZE routine [Spek (2015). Acta Cryst. C71, 9–18] of PLATON. The solvent contribution is not included in the reported molecular weight and density.
- Published
- 2019
- Full Text
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26. Dichloridobis(pyridine-2-selenolato-κ2N,Se)tin(IV)
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Gunay Z. Mammadova, Sheyda R. Ismaylova, Zhanna V. Matsulevich, Vladimir K. Osmanov, Alexander V. Borisov, and Victor N. Khrustalev
- Subjects
Crystallography ,QD901-999 - Abstract
The title compound, [SnCl2(C5H4NSe)2], is the product of a reaction of 2,2′-dipyridyl diselenide with tin tetrachloride. The molecule is located about a twofold rotation axis. The coordination environment of the SnIV atom is a distorted octahedron, with two bidentate 2-pyridineselenolate ligands inclined to each other at an angle of 83.96 (7)°. The two Sn—Cl and two Sn—N bonds are in cis configurations, while the two Sn—Se bonds of 2.5917 (3) Å are in a trans configuration, with an Se—Sn—Se angle of 157.988 (15)°. In the crystal, π–π interactions between the pyridine rings [centroid-to-centroid distance of 3.758 (3) Å] and weak intermolecular C—H...Cl hydrogen bonds link the molecules into chains along the c axis.
- Published
- 2013
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27. [Bis(pyridin-2-yl) selenide-κ2N,N′]tetrachloridotin(IV)
- Author
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Gunay Z. Mammadova, Zhanna V. Matsulevich, Vladimir K. Osmanov, Alexander V. Borisov, and Victor N. Khrustalev
- Subjects
Crystallography ,QD901-999 - Abstract
The title compound, [SnCl4(C10H8N2Se)], was obtained by the reaction of 2,2′-dipyridyl diselenide with tin tetrachloride. The SnIV ion is coordinated by two N atoms [Sn—N = 2.266 (2) and 2.274 (2) Å] from the bis(2-pyridyl)selenide ligand and four chloride anions [Sn—Cl = 2.3717 (6)–2.3939 (6) Å] in a distorted octahedral geometry. The central six-membered chelate ring has a boat conformation with the Se and Sn atoms deviating by 0.692 (3) and 0.855 (3) Å, respectively, from the mean plane through the remaining four ring atoms. The pyridine rings are inclined to each other by a dihedral angle of 49.62 (8)°. The crystal packing exhibits short intermolecular Se...Cl contacts [3.5417 (7) and 3.5648 (7) Å], weak C—H...Cl hydrogen bonds and π–π stacking interactions between the pyridine rings with a centroid–centroid distance of 3.683 (3) Å.
- Published
- 2012
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28. 1-Methyl-2,3-dihydro-1H-benzimidazole-2-selone
- Author
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Alexander V. Borisov, Victor N. Khrustalev, Vladimir K. Osmanov, Gunay Z. Mammadova, and Zhanna V. Matsulevich
- Subjects
Crystallography ,QD901-999 - Abstract
The title compound C8H8N2Se, is the product of the reaction of 2-chloro-1-methylbenzimidazole with sodium hydroselenide. The molecule is almost planar (r.m.s. deviation = 0.041 Å) owing to the presence of the long chain of conjugated bonds (Se=C—NMe—C=C—C=C—C=C—NH). The C=Se bond length [1.838 (2) Å] corresponds well to those found in the close analogs and indicates its pronounced double-bond character. In the crystal, molecules form helicoidal chains along the b axis by means of N—H...Se hydrogen bonds.
- Published
- 2012
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29. (7aR*,12bS*)-8,12b-Dihydro-7aH-indeno[1′,2′:5,6][1,4]selenazino[2,3,4-ij]quinolin-13-ium hydrogen sulfate
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Gunay Z. Mammadova, Zhanna V. Matsulevich, Galina N. Borisova, Alexander V. Borisov, and Victor N. Khrustalev
- Subjects
Crystallography ,QD901-999 - Abstract
In the title compound, C18H14NSe+·HSO4−, the cyclopentene ring in the cation has an envelope conformation while the central six-membered 1,4-selenazine ring adopts a sofa conformation. The dihedral angle between the planes of the terminal benzene rings is 68.08 (11)°. In the crystal, the anions form chains along the c axis through O—H...O hydrogen bonds. Weak C—H...O and C—H...π hydrogen bonds, as well as attractive Se...Se [3.5608 (8) Å] interactions, further consolidate the crystal structure.
- Published
- 2011
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30. rac-Ethyl 6-hydroxy-6-methyl-3-oxo-4-phenyl-1,3,4,5,6,7-hexahydrobenzo[c][1,2]oxazole-5-carboxylate
- Author
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Arif I. Ismiyev, Abel M. Maharramov, Bahruz A. Rashidov, Gunay Z. Mammadova, and Rizvan K. Askerov
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Crystallography ,QD901-999 - Abstract
In the title compound, C17H19NO5, the cyclohexene ring is in a half-chair conformation and the isoxazole ring in an envelope conformation with the N atom as the flap. The C atoms in the 4- and 6-positions are of the same absolute configuration, whereas the C atom in the 5-position is of the opposite configuration, i.e. (4S*,5R*,6S*). The methyl fragment of the ethoxycarbonyl group at position 5 is disordered over two sets of sites in a 0.60:0.40 ratio. The crystal packing displays intermolecular N—H...O and O—H...O hydrogen bonds.
- Published
- 2011
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31. 1,3-Benzothiazole-2(3H)-selone
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Gunay Z. Mammadova, Zhanna V. Matsulevich, Vladimir K. Osmanov, Alexander V. Borisov, and Victor N. Khrustalev
- Subjects
Crystallography ,QD901-999 - Abstract
The title compound, C7H5NSSe, is the product of the reaction of 2-chlorobenzothiazole with sodium hydroselenide. The molecule is almost planar (r.m.s. deviation = 0.018 Å) owing to the presence of the long chain of conjugated bonds (Se=C—N—C=C—C=C—C=C). The geometrical parameters correspond well to those of the analog N-methylbenzothiazole-2(3H)-selone, demonstrating that the S atom does not take a significant role in the electron delocalization within the molecule. In the crystal, molecules form centrosymmetric dimers by means of intermolecular N—H...Se hydrogen bonds. The dimers have a nonplanar ladder-like structure. Furthermore, the dimers are linked into ribbons propagating in [010] by weak attractive Se...S [3.7593 (4) Å] interactions.
- Published
- 2011
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32. Crystal structure and Hirshfeld surface analysis of dimethyl 5-[2-(2,4,6-trioxo-1,3-diazinan-5-ylidene)hydrazin-1-yl]benzene-1,3-dicarboxylate 0.224-hydrate
- Author
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S. R. Hajiyeva, Fatali E. Huseynov, Ajaya Bhattarai, Mehmet Akkurt, Nazim T. Shamilov, Gunay Z. Mammadova, and Zeliha Atioğlu
- Subjects
Surface (mathematics) ,crystal structure ,Crystal structure ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Research Communications ,Crystal ,chemistry.chemical_compound ,symbols.namesake ,Hirshfeld surface analysis ,General Materials Science ,Benzene ,Crystallography ,010405 organic chemistry ,Hydrogen bond ,1,3-diazinane ring ,General Chemistry ,Condensed Matter Physics ,0104 chemical sciences ,chemistry ,QD901-999 ,hydrogen bonds ,symbols ,van der Waals force ,Hydrate - Abstract
In the crystal, molecules are linked by pairs of N—H⋯O hydrogen bonds into ribbons along the c-axis direction. The layered crystal packing is further consolidated by van der Waals and C—H⋯π interactions., In the crystal, the whole molecule of the title compound, C14H12N4O7·0.224H2O, is nearly planar with a maximum deviation from the least-squares plane of 0.352 (1) Å. The molecular conformation is stabilized by an intramolecular N—H⋯O hydrogen bond, generating an S(6) ring motif. In the crystal, molecules are linked by centrosymmetric pairs of N—H⋯O hydrogen bonds, forming ribbons along the c-axis direction. These ribbons connected by van der Waals contacts, forming sheets parallel to the ac plane. There are also intermolecular van der Waals contacts and and C—H⋯π interactions between the sheets. A Hirshfeld surface analysis indicates that the most prevalent interactions are O⋯H/H⋯O (41.2%), H⋯H (19.2%), C⋯H/H⋯C (12.2%) and C⋯O/ O⋯C (8.4%).
- Published
- 2021
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33. Crystal structure and Hirshfeld surface analysis of 5,7-diphenyl-1,2,3,5,6,7-hexahydroimidazo[1,2-a]pyridine-6,6,8-tricarbonitrile methanol monosolvate
- Author
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Farid N. Naghiyev, Ali N. Khalilov, Zeliha Atioğlu, Anzurat A. Akobirshoeva, Gunay Z. Mammadova, Mehmet Akkurt, İbrahim G. Mamedov, Kapadokya Üniversitesi, Uygulamalı Bilimler Yüksekokulu, Havacılık Elektrik ve Elektroniği Bölümü, and Atioğlu, Zeliha
- Subjects
crystal structure ,Nitrile ,Cyclohexane conformation ,02 engineering and technology ,Crystal structure ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Research Communications ,Crystal ,chemistry.chemical_compound ,Imidazolidine ,Pyridine ,Hirshfeld surface analysis ,General Materials Science ,hydrogen bond ,Crystallography ,Hydrogen bond ,General Chemistry ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,0104 chemical sciences ,chemistry ,QD901-999 ,imidazolidine ring ,0210 nano-technology ,pyridine ring - Abstract
In the crystal, O—H⋯N and N—H⋯O hydrogen bonds link pairs of molecules via two methanol molecules. These molecules are connected to each other by C—H⋯N hydrogen bonds and form columns along the a-axis direction., In the title compound, C22H17N5·CH4O, the imidazolidine ring of the 1,2,3,5,6,7-hexahydroimidazo[1,2-a]pyridine ring system is a twisted envelope, while the 1,2,3,4-tetrahydropyridine ring adopts a twisted boat conformation. In the crystal, pairs of molecules are linked by O—H⋯N and N—H⋯O hydrogen bonds via two methanol molecules, forming a centrosymmetric R 4 4(16) ring motif. These motifs are connected to each other by C—H⋯N hydrogen bonds and form columns along the a axis. The columns form a stable molecular packing, being connected to each other by van der Waals interactions. A Hirshfeld surface analysis indicates that the most significant contributions to the crystal packing are from H⋯H (43.8%), N⋯H/H⋯N (31.7%) and C⋯H/H⋯C (18.4%) contacts.
- Published
- 2021
34. Halogen-bonding in 3-nitrobenzaldehyde-derived dichlorodiazadienes
- Author
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Gunay Z. Mammadova, Aliyar A. Babazade, Valentine G. Nenajdenko, Gulnar T. Suleymanova, Abel M. Maharramov, Namiq G. Shikhaliyev, G. V. Babayeva, and Irada M. Shikhaliyeva
- Subjects
chemistry.chemical_compound ,Halogen bond ,Chemistry ,Organic Chemistry ,Polymer chemistry ,3-Nitrobenzaldehyde - Published
- 2021
- Full Text
- View/download PDF
35. Crystal Structure and Hirshfeld Surface Analysis of (E)-1-(4-Bromophenyl)-2-(2,2-Dichloro-1-(4-Fluorophenyl)vinyl)diazene
- Author
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Alejandro Cárdenas, K. N. Bagirova, Jonathan Cisterna, Namiq Q. Shikhaliyev, Gunay Z. Mammadova, Iván Brito, and A. A. Niyazova
- Subjects
010302 applied physics ,Diffraction ,Chemistry ,Electrospray ionization ,Hydrazine ,General Chemistry ,Tetramethylethylenediamine ,Crystal structure ,010403 inorganic & nuclear chemistry ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Crystallography ,0103 physical sciences ,Molecule ,General Materials Science ,Spectroscopy ,Monoclinic crystal system - Abstract
The CuCl-catalyzed olefination with CCl4 in the presence of tetramethylethylenediamine in DMSO leads to the formation of (E)-1-(4-bromo-(2,2-dichloro-1-(4-fluorophenyl)vinyl)-diazene from (E)-1-(4-bromophenyl)-2-(4-fluorobenzylidene)hydrazine. The structure was confirmed by conventional spectroscopy techniques (nuclear magnetic resonance, electrospray ionization mass spectrometry) and determined by X-ray diffraction analysis of single crystals. The title compound crystallized in a monoclinic cell (space group P21/c, Z = 4) with a centrosymmetric arrangement of molecules in the crystal structure, showing interesting non-covalent interactions that were studied by Hirshfeld surface analysis.
- Published
- 2020
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- View/download PDF
36. Crystal structure and Hirshfeld surface analysis of phenyl(5,7,8a-triphenyl-1,2,3,7,8,8a-hexahydroimidazo[1,2-a]pyridin-6-yl)methanone with an unknown solvent
- Author
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İbrahim G. Mamedov, Farid N. Naghiyev, Gunay Z. Mammadova, Afet T. Huseynova, Sevim Türktekin Çelikesir, Mehmet Akkurt, and Anzurat A. Akobirshoeva
- Subjects
crystal structure ,cycloaddition products ,Hydrogen bond ,hexahydroimidazo[1,2-a]pyridine ring ,SQUEEZE ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,Ring (chemistry) ,HEXA ,humanities ,Research Communications ,lcsh:Chemistry ,Crystal ,Solvent ,chemistry.chemical_compound ,Crystallography ,lcsh:QD1-999 ,chemistry ,hexahydroimidazo[1,2-a]pyridine ring ,Imidazolidine ,Pyridine ,General Materials Science ,cycloaddition products - Abstract
The crystal exhibits weak intramolecular π–π interactions between the phenyl rings. In the crystal, molecules are linked via pairs of C—H⋯ O, forming inversion dimers. The dimers are further linked by pairs of C—H⋯π interactions, forming infinite chains along the c-axis direction., In the title compound, C32H28N2O, the imidazolidine and pyridine rings of the central hexahydroimidazo[1,2-a]pyridine ring system adopt envelope and screw-boat conformations, respectively. The molecule exhibits two weak intramolecular π–π interactions between phenyl rings. In the crystal, molecules are linked via pairs of C—H⋯ O hydrogen bonds, forming inversion dimers. The dimers are further linked by pairs of C—H⋯π interactions, forming infinite chains along the c-axis direction. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (73.4%), C⋯H/H⋯C (18.8%) and O⋯H/H⋯O (5.7%) contacts. The contribution of some disordered solvent to the scattering was removed using the SQUEEZE routine [Spek (2015 ▸). Acta Cryst. C71, 9–18] in PLATON. The solvent contribution was not included in the reported molecular weight and density.
- Published
- 2020
- Full Text
- View/download PDF
37. (E)-1-(2,6-Dichlorophenyl)-2-(3-nitrobenzylidene)hydrazine: crystal structure and Hirshfeld surface analysis
- Author
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Gulnare V. Babayeva, Zeliha Atioğlu, Nurana V. Gurbanova, Namiq Q. Shikhaliyev, Gunay Z. Mammadova, Sixberth Mlowe, Mehmet Akkurt, Gulnar T. Suleymanova, Kapadokya Üniversitesi, Uygulamalı Bilimler Yüksekokulu, Havacılık Elektrik ve Elektroniği Bölümü, and Atioğlu, Zeliha
- Subjects
crystal structure ,Crystallography ,Hydrogen bond ,Stacking ,General Chemistry ,Crystal structure ,Dihedral angle ,2,6-dichlorophenyl ring ,Condensed Matter Physics ,Ring (chemistry) ,Crystal ,chemistry.chemical_compound ,isomer ,chemistry ,QD901-999 ,hirshfeld surface analysis ,Nitro ,General Materials Science ,3-nitrobenzylidene ring ,Benzene - Abstract
The stabilized conformation of the title compound, C13H9Cl2N3O2, is similar to that of the isomeric compound (E)-1-(2,6-dichlorophenyl)-2-(2-nitrobenzylidene)hydrazine. The 2,6-dichlorophenyl ring and the nitro-substituted benzene ring form a dihedral angle of 26.25 (16)°. In the crystal, face-to-face π-π stacking interactions along the a-axis direction occur between the centroids of the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring. The molecules are further linked by C—H...O contacts and N—H...O and C—H...Cl hydrogen bonds, forming pairs of hydrogen-bonded molecular layers parallel to (100). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H...H (22.1%), Cl...H/H...Cl (20.5%), O...H/H...O (19.7%), C...C (11.1%) and C...H/H...C (8.3%) interactions.
- Published
- 2020
- Full Text
- View/download PDF
38. Crystal structure and Hirshfeld surface analysis of (E)-4-{2,2-dichloro-1-[(3,5-dimethylphenyl)diazenyl]ethenyl}-N,N-dimethylaniline
- Author
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Mehmet Akkurt, Gulnar T. Suleymanova, Gunay Z. Mammadova, Kadriye Özkaraca, Namiq Q. Shikhaliyev, Daniel M. Shadrack, and Ulviyya F. Askerova
- Subjects
crystal structure ,Crystallography ,General Chemistry ,Crystal structure ,Dihedral angle ,Condensed Matter Physics ,chemistry.chemical_compound ,Aniline ,chemistry ,QD901-999 ,hirshfeld surface analysis ,cl...cl halogen bonds ,General Materials Science ,Benzene - Abstract
In the title compound, C18H19Cl2N3, the planes of the benzene rings subtend a dihedral angle of 77.07 (10)°. In the crystal, molecules are associated into inversion dimers via short Cl...Cl contacts [3.3763 (9) Å]. A Hirshfeld surface analysis indicates that the most important contact percentages for the different types of interactions are H...H (43.9%), Cl...H/H...Cl (22.9%), C...H/H...C (20.8%) and N...H/H...N (8.0%).
- Published
- 2020
- Full Text
- View/download PDF
39. Crystal structure and Hirshfeld surface analysis of (E)-1-(2,6-dichlorophenyl)-2-(2-nitrobenzylidene)hydrazine
- Author
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Gunay Z. Mammadova, Sevim Türktekin Çelikesir, Namiq Q. Shikhaliyev, Gulnare V. Babayeva, Nurana V. Gurbanova, Ajaya Bhattarai, Mehmet Akkurt, and Gulnar T. Suleymanova
- Subjects
crystal structure ,Stacking ,Crystal structure ,Dihedral angle ,2,6-dichlorophenyl ring ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Research Communications ,Crystal ,chemistry.chemical_compound ,face-to-face π–π stacking interactions ,face-to-face π–π stacking interactions ,Hirshfeld surface analysis ,General Materials Science ,Benzene ,Crystallography ,010405 organic chemistry ,Hydrogen bond ,Chemistry ,2,6-dichlorophenyl ring ,General Chemistry ,Condensed Matter Physics ,0104 chemical sciences ,QD901-999 ,Nitro ,nitro-substituted benzene ring - Abstract
In the crystal, face-to-face π-π stacking interactions occur along the a-axis direction between the centroids of the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring. In addition, these molecules show intramolecular N—H⋯Cl and C—H⋯O contacts and are linked by intermolecular N—H⋯O and C—H⋯Cl hydrogen bonds, forming pairs of hydrogen-bonded molecular layers parallel to (20)., In the title compound, C13H9Cl2N3O2, the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring form a dihedral angle of 21.16 (14)°. In the crystal, face-to-face π–π stacking interactions occur along the a-axis direction between the centroids of the 2,6-dichlorophenyl ring and the nitro-substituted benzene ring. Furthermore, these molecules show intramolecular N—H⋯Cl and C—H⋯O contacts and are linked by intermolecular N—H⋯O and C—H⋯Cl hydrogen bonds, forming pairs of hydrogen-bonded molecular layers parallel to (20). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (23.0%), O⋯H/H⋯O (20.1%), Cl⋯H/H⋯Cl (19.0%), C⋯C (11.2%) and H⋯C/C⋯H (8.0%) interactions.
- Published
- 2020
- Full Text
- View/download PDF
40. Crystal structure and Hirshfeld surface analysis of (E)-3-(benzylideneamino)-5-phenylthiazolidin-2-iminium bromide
- Author
-
Abel M. Maharramov, Gulnara Sh. Duruskari, Gunay Z. Mammadova, Mehmet Akkurt, and Taras Chyrka
- Subjects
chemistry.chemical_classification ,crystal structure ,Crystallography ,Hydrogen bond ,Iminium ,Salt (chemistry) ,General Chemistry ,Crystal structure ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Condensed Matter Physics ,Ring (chemistry) ,Crystal ,chemistry.chemical_compound ,chemistry ,Bromide ,QD901-999 ,Atom ,charge assisted hydrogen bonding ,hirshfeld surface analysis ,thiazolidine ring ,envelope conformation ,General Materials Science - Abstract
The central thiazolidine ring of the title salt, C16H16N3S+center dot Br-, adopts an envelope conformation, with the C atom bearing the phenyl ring as the flap atom. In the crystal, the cations and anions are linked by N-H center dot center dot center dot Br hydrogen bonds, forming chains parallel to the b-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H center dot center dot center dot H (46.4%), C center dot center dot center dot H/H center dot center dot center dot C (18.6%) and H center dot center dot center dot Br/Br center dot center dot center dot H (17.5%) interactions.
- Published
- 2020
41. Crystal structures and Hirshfeld surface analyses of the two isotypic compounds (E)-1-(4-bromophenyl)-2-[2,2-dichloro-1-(4-nitrophenyl)ethenyl]diazene and (E)-1-(4-chlorophenyl)-2-[2,2-dichloro-1-(4-nitrophenyl)ethenyl]diazene
- Author
-
Namiq Q. Shikhaliyev, Gulnare V. Babayeva, Irada M. Shikhaliyeva, Flavien A. A. Toze, Ayten A. Niyazova, Mehmet Akkurt, Gunay Z. Mammadova, and Gulnar T. Suleymanova
- Subjects
crystal structure ,intermolecular halogen bonds ,Crystallography ,Chemistry ,diazene derivatives ,Aromaticity ,General Chemistry ,Crystal structure ,Dihedral angle ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Condensed Matter Physics ,Medicinal chemistry ,dyes ,Crystal ,symbols.namesake ,QD901-999 ,Nitro ,symbols ,Hirshfeld surface analysis ,General Materials Science ,van der Waals force - Abstract
In the two isotypic title compounds, C14H8BrCl2N3O2, (I), and C14H8Cl3N3O2, (II), the substitution of one of the phenyl rings is different [Br for (I) and Cl for (II)]. Aromatic rings form dihedral angles of 60.9 (2) and 64.1 (2)degrees, respectively. Molecules are linked through weak X center dot center dot center dot Cl contacts [X = Br for (I) and Cl for (II)], C-H center dot center dot center dot Cl and C- Cl center dot center dot center dot pi interactions into sheets parallel to the ab plane. Additional van der Waals interactions consolidate the three-dimensional packing. Hirshfeld surface analysis of the crystal structures indicates that the most important contributions for the crystal packing for (I) are from C center dot center dot center dot H/H center dot center dot center dot C (16.1%), O center dot center dot center dot H/H center dot center dot center dot O (13.1%), Cl center dot center dot center dot H/H center dot center dot center dot Cl (12.7%), H center dot center dot center dot H (11.4%), Br center dot center dot center dot H/H center dot center dot center dot Br (8.9%), N center dot center dot center dot H/H center dot center dot center dot N (6.9%) and Cl center dot center dot center dot C/C center dot center dot center dot Cl (6.6%) interactions, and for (II), from Cl center dot center dot center dot H / H center dot center dot center dot Cl (21.9%), C center dot center dot center dot H/H center dot center dot center dot C (15.3%), O center dot center dot center dot H/H center dot center dot center dot O (13.4%), H center dot center dot center dot H (11.5%), Cl center dot center dot center dot C/C center dot center dot center dot Cl (8.3%), N center dot center dot center dot H/H center dot center dot center dot N (7.0%) and Cl center dot center dot center dot Cl (5.9%) interactions. The crystal of (I) studied was refined as an inversion twin, the ratio of components being 0.9917 (12):0.0083 (12).
- Published
- 2019
42. Crystal structure and Hirshfeld surface analysis of (E)-3-[(4-chlorobenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide
- Author
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Gulnara Sh. Duruskari, Ali N. Khalilov, Mehmet Akkurt, Gunay Z. Mammadova, Taras Chyrka, and Abel M. Maharramov
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crystal structure ,Crystallography ,010405 organic chemistry ,General Chemistry ,disorder ,010402 general chemistry ,Condensed Matter Physics ,charge-assisted hydrogen bonding ,01 natural sciences ,0104 chemical sciences ,Research Communications ,thiazolidine ring ,QD901-999 ,thiazolidine ring ,isotypic ,Hirshfeld surface analysis ,General Materials Science - Abstract
In the crystal of the title salt, the cations and anions are linked via N—H⋯Br hydrogen bonds. In the 1H NMR spectra of this compound, the NH iminium protons are observed at δ = 10.46 p.p.m., which confirms the strong charge-assisted hydrogen bonding (CAHB) in the =HN+—H⋯Br− synthon., The title salt, C16H15ClN3S+·Br−, is isotypic with (E)-3-[(4-fluorobenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide [Khalilov et al. (2019 ▸). Acta Cryst. E75, 662–666]. In the cation of the title salt, the atoms of the phenyl ring attached to the central thiazolidine ring and the atom joining the thiazolidine ring to the benzene ring are disordered over two sets of sites with occupancies of 0.570 (3) and 0.430 (3). The major and minor components of the disordered thiazolidine ring adopt slightly distorted envelope conformations, with the C atom bearing the phenyl ring as the flap atom. In the crystal, centrosymmetrically related cations and anions are linked into dimeric units via N—H⋯Br hydrogen bonds, which are further connected by weak C—H⋯Br contacts into chains parallel to the a axis. Furthermore, not existing in the earlier report of (E)-3-[(4-fluorobenzylidene)amino]-5-phenylthiazolidin-2-iminium bromide, C—H⋯π interactions and π–π stacking interactions [centroid-to-centroid distance = 3.897 (2) Å] between the major components of the disordered phenyl ring contribute to the stabilization of the molecular packing. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions for the crystal packing are from H⋯H (30.5%), Br⋯H/H⋯Br (21.2%), C⋯H/H⋯C (19.2%), Cl⋯H/H⋯Cl (13.0%) and S⋯H/H⋯S (5.0%) interactions.
- Published
- 2019
43. Crystal structure and Hirshfeld surface analysis of 2,2,2-tri-chloro
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Zeliha, Atioğlu, Mehmet, Akkurt, Gunay Z, Mammadova, and Ajaya, Bhattarai
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crystal structure ,C—H⋯O hydrogen bonds ,IMDAF reaction ,Diels–Alder reaction ,Hirshfeld surface analysis ,C—H⋯π interactions ,tetrahydrofuran rings ,Research Communications - Abstract
In the crystal, molecules are linked by C—H⋯O hydrogen bonds, forming layers parallel to the (001) plane. These layers of molecules are connected by C—H⋯π interactions along the c-axis direction. Interlayer van der Waals and interhalogen interactions stabilize the packing., In the title compound, C24H18Cl3NO3, the tetrahydrofuran rings adopt envelope conformations. In the crystal, C—H⋯O hydrogen bonds connect molecules, generating layers parallel to the (001) plane. These layers are connected along the c-axis direction by C—H⋯π interactions. The packing is further stabilized by interlayer van der Waals and interhalogen interactions. The most important contributions to the surface contacts are from H⋯H (36.8%), Cl⋯H/H⋯Cl (26.6%), C⋯H/H⋯C (18.8%) and O⋯H/H⋯O (11.3%) interactions, as concluded from a Hirshfeld surface analysis.
- Published
- 2021
44. High level production and characterization of truncated human angiotensin converting enzyme 2 in Nicotiana benthamiana plant as a potential therapeutic target in COVID-19
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Tarlan Mammedov, Gunay Z. Mammadova, Merve Ilgın, Irem Gurbuzaslan, Aykut Ozkul, Damla Yuksel, and Gulnara Hasanova
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chemistry.chemical_classification ,biology ,Coronavirus disease 2019 (COVID-19) ,Chemistry ,fungi ,Nicotiana benthamiana ,medicine.disease_cause ,biology.organism_classification ,In vitro ,law.invention ,Microbiology ,Enzyme ,law ,Angiotensin-converting enzyme 2 ,medicine ,Recombinant DNA ,Receptor ,Coronavirus - Abstract
The COVID-19 pandemic, which is caused by SARS-CoV-2 has rapidly spread to more than 222 countries and has put global public health at high risk. The world urgently needs safe, a cost-effective SARS-CoV-2 coronavirus vaccine, therapeutic and antiviral drugs to combat the COVID-19. Angiotensin-converting enzyme 2 (ACE2), as a key receptor for SARS-CoV-2 infections, has been proposed as a potential therapeutic target in COVID-19 patients. In this study, we report high level production (about ∼0.75 g /kg leaf biomass) of glycosylated and non-glycosylated forms of recombinant human truncated ACE2 in Nicotiana benthamiana plant. The plant produced recombinant human truncated ACE2s successfully bind to the SARC-CoV-2 spike protein, but deglycosylated ACE2 binds more strongly than the glycosylated counterpart. Importantly, both deglycosylated and glycosylated forms of AEC2 stable at elevated temperatures for prolonged periods and demonstrated strong anti-SARS-CoV-2 activity in vitro. The IC50 values of glycosylated and deglycosylated AEC2 were 0.4 and 24 μg/ml, respectively, for the pre-entry infection, when incubated with 100TCID50 of SARS-CoV-2. Thus, plant produced truncated ACE2s are promising cost-effective and safe candidate as a potential therapeutic targets in the treatment of COVID-19 patients.
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- 2021
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45. Crystal structure and Hirshfeld surface analysis of 2,2,2-tri-chloro- N, N-bis-{[(1 RS,4 SR)-1,4-di-hydro-1,4-ep-oxy-naphthalen-1-yl]meth-yl}acetamide
- Author
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Mehmet Akkurt, Ajaya Bhattarai, Gunay Z. Mammadova, Zeliha Atioğlu, Kapadokya Üniversitesi, Uygulamalı Bilimler Yüksekokulu, Havacılık Elektrik ve Elektroniği Bölümü, and Atioğlu, Zeliha
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tetrahydrofuran rings ,crystal structure ,Hydrogen bond ,C—H⋯O hydrogen bonds ,IMDAF reaction ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,C—H⋯π interactions ,Crystal ,chemistry.chemical_compound ,Crystallography ,symbols.namesake ,C—H interactions ,chemistry ,Diels–Alder reaction ,symbols ,Hirshfeld surface analysis ,General Materials Science ,C—HO hydrogen bonds ,van der Waals force ,Acetamide ,tetrahydrofuran rings - Abstract
TARAMAWOS TARAMAPUBMED TARAMASCOPUS In the title compound, C24H18Cl3NO3, the tetrahydrofuran rings adopt envelope conformations. In the crystal, C-H center dot center dot center dot O hydrogen bonds connect molecules, generating layers parallel to the (001) plane. These layers are connected along the c-axis direction by C-H center dot center dot center dot pi interactions. The packing is further stabilized by interlayer van der Waals and interhalogen interactions. The most important contributions to the surface contacts are from H center dot center dot center dot H (36.8%), Cl center dot center dot center dot H/H center dot center dot center dot Cl (26.6%), C center dot center dot center dot H/H center dot center dot center dot C (18.8%) and O center dot center dot center dot H/H center dot center dot center dot O (11.3%) interactions, as concluded from a Hirshfeld surface analysis.
- Published
- 2021
46. Crystal structure and Hirshfeld surface analysis of 4-{2,2-di-chloro-1-[(
- Author
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Kadriye, Özkaraca, Mehmet, Akkurt, Namiq Q, Shikhaliyev, Ulviyya F, Askerova, Gulnar T, Suleymanova, Gunay Z, Mammadova, and Sixberth, Mlowe
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crystal structure ,Hirshfeld surface analysis ,halogen and H-atom contacts ,non-covalent interactions ,Research Communications - Abstract
In the title compound, the benzene rings make a dihedral angle of 62.73 (9)° with each other. In the crystal, molecules are linked by a pair of C—Cl⋯π interactions, forming an inversion dimer. A short HL⋯·HL contact links the dimers, forming a ribbon propagating along the c-axis., In the tile compound, C17H17Cl2N3, the dihedral angle between the benzene rings is 62.73 (9)°. In the crystal, there are no classical hydrogen bonds. Molecules are linked by a pair of C—Cl⋯π interactions, forming an inversion dimer. A short intermolecular HL⋯HL contact [Cl⋯Cl = 3.2555 (9) Å] links the dimers, forming a ribbon along the c-axis direction. The Hirshfeld surface analysis and two-dimensional fingerprint plots reveal that the most important contributions for the crystal packing are from H⋯H (45.4%), Cl⋯H/H⋯Cl (21.0%) and C⋯H/H⋯C (19.0%) contacts.
- Published
- 2020
47. Sequence Analysis and Amino Acid Variations of Structural Proteins Deduced From Novel Coronavirus SARS-CoV-2 Strains, Isolated in Different Countries
- Author
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Inanc Soylu, Gulnara Hasanova, Gunay Z. Mammadova, and Tarlan Mamedov
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life_sciences_other ,chemistry.chemical_classification ,Sequence analysis ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,virus diseases ,Spike Protein ,Biology ,medicine.disease_cause ,Virology ,Amino acid ,chemistry ,medicine ,Severe acute respiratory syndrome coronavirus ,Coronavirus - Abstract
SARS-CoV-2 is a novel and highly pathogenic coronavirus, which was first diagnosed in Wuhan city, China, in 2019, and spread to 185 countries and territories, and as of April 29, 2020, more than 3.11 million cases were recorded, and more than 217,000 people were killed. Despite all worldwide efforts, there is currently no vaccine, any drugs available to protect people against deadly SARS-CoV-2 coronavirus. The world urgently needs a SARS-CoV-2 coronavirus vaccine or effective antiviral drugs to relieve the human suffering associated with the pandemic that kills thousands of people every day. The SARS-CoV-2 genome encode a non-structural proteins named as ORF1a/b, and structural proteins such as spike (S) glycoprotein, nucleocapsid protein (N), small envelop protein (E) and matrix protein (M). A number of studies have been shown that CoV spike (S) glycoprotein and nucleocapsid protein (N) could be promising targets for vaccine, antibodies and therapeutic drug development to combat with deadly, pandemic SARS-CoV-2. Purposes of the present paper is the sequence analysis and amino acid variations of structural proteins deduced from novel coronavirus SARS-CoV-2 strains, isolated in different countries. Multiple sequence alignment of S, N and E proteins from four different coronavirus species, are also described. It is expected that the data from these studies will be very useful for the the designing and development of vaccines, antibodies and therapeutic agents that can be used to combat with the highly pathogenic SARS-CoV-2 coronavirus worldwide.
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- 2020
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48. Pnicogen, halogen and hydrogen bonds in (E)-1-(2,2-dichloro-1-(2-nitrophenyl)vinyl)-2-(para-substituted phenyl)-diazenes
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Armando J. L. Pombeiro, Fedor I. Zubkov, G. V. Babayeva, Atash V. Gurbanov, Kamran T. Mahmudov, Gulnar T. Suleymanova, Valentine G. Nenajdenko, Abel M. Maharramov, Gunay Z. Mammadova, and Namiq Q. Shikhaliyev
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chemistry.chemical_classification ,Schiff base ,010405 organic chemistry ,Hydrogen bond ,Process Chemistry and Technology ,General Chemical Engineering ,Synthon ,Crystal structure ,Tetramethylethylenediamine ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Intramolecular force ,Halogen ,Non-covalent interactions - Abstract
Schiff base condensation of 2-nitrobenzaldehyde with (para-substituted phenyl)hydrazine in the presence of CH3COONa in EtOH at 80 °C produces (E)-1-(para-substituted phenyl)-2-(2-nitrobenzylidene)hydrazines [−OCH3 (1), −CH3 (2), −H (3), −Br (4), −Cl (5), −F (6)]. CuCl catalyzed olefination of 1−6 with CCl4 in the presence of tetramethylethylenediamine (TMEDA) in DMSO leads to (E)-1-(2,2-dichloro-1-(2-nitrophenyl)vinyl)-2-(para-substituted phenyl)-diazenes [−OCH3 (7), −CH3 (8), −H (9), −Br (10), −Cl (11), −F (12)], respectively. 1–12 were characterized by 1H and 13C NMR spectroscopies, ESI-MS, elemental and X-ray diffraction (for 8, 9 and 12) analysis. The single crystal X-ray analysis of 8, 9 and 12 evidence the intramolecular N⋯Cl pnicogen bonds which is significantly strengthened in view of the planarity of the four atoms involved in the 1,4-membered synthon. The intermolecular halogen and hydrogen bonds also contribute to stabilize the crystal structures of 8, 9 and 12. In DMSO solution 1–12 exist in the E-isomeric form, which stabilized by inter- and intramolecular noncovalent interactions. Solvatochromic behavior on UV–vis absorption spectra of azo dyes 7–12 were studied in CH2Cl2, DMF and MeOH, which λmax is dependent on the attached substituents at para- position of aromatic moiety.
- Published
- 2018
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- View/download PDF
49. Tetrel, halogen and hydrogen bonds in bis (4-(( E )-(2,2-dichloro-1-(4-substitutedphenyl)vinyl)diazenyl)phenyl)methane dyes
- Author
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Fedor I. Zubkov, Namiq Q. Shikhaliyev, Kamran T. Mahmudov, Nigar E. Ahmadova, Atash V. Gurbanov, Gunay Z. Mammadova, Armando J. L. Pombeiro, Valentine G. Nenajdenko, and Abel M. Maharramov
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chemistry.chemical_classification ,Absorption spectroscopy ,010405 organic chemistry ,Chemistry ,Hydrogen bond ,Process Chemistry and Technology ,General Chemical Engineering ,Tetramethylethylenediamine ,Carbon-13 NMR ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,Intramolecular force ,Halogen ,Non-covalent interactions ,Solvent effects - Abstract
Reaction of bis(4-hydrazinylphenyl)methane with 4-substitutedbenzaldehyde in the presence of CH3COONa in EtOH at 80 °C yields bis(4-((E)-2-(4-substitutedbenzylidene)hydrazinyl)phenyl) methane [−N(CH3)2 1, −F 2, −Cl 3, −NO2 4], which subsequently in the presence of CCl4, CuCl and tetramethylethylenediamine in DMSO undergoes Cu-catalyzed olefination products, bis(4-((E)-(2,2-dichloro-1-(4-substitutedphenyl)vinyl)diazenyl)phenyl)methane [−N(CH3)2 5, −F 6, −Cl 7, −NO2 8], respectively. All compounds were characterized by IR (for 1–4), 1H and 13C NMR spectroscopies, elemental and X-ray diffraction analysis (for 7 and 8). No only intermolecular hydrogen and intramolecular N⋯Cl tetrel bonds, but also the Cl⋯Cl and Cl⋯O types of halogen binding were found in the structures of 7 and 8, respectively. The collected data confirm that bis-azodyes 5–8 exist in DMSO solution and in solid state exclusively in the E-isomeric form, being stabilized by noncovalent interactions. Solvent effects on the UV–vis absorption spectra of 5−8 were studied in CH2Cl2, DMF and EtOH, which λmax is dependent on the type of substituents attached para-position of aromatic moiety.
- Published
- 2018
- Full Text
- View/download PDF
50. Crystal structure of (Z)-2-(2-(1,3-dioxo-1-(phenylamino)butan-2-ylidene)hydrazineyl) terephthalic acid-dimethylsulfoxide (1/1), C18H15N3O6 ⋅ C2H6OS
- Author
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Iván Brito, Alejandro Cárdenas, and Gunay Z. Mammadova
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Terephthalic acid ,Crystallography ,010405 organic chemistry ,Chemistry ,Crystal structure ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Medicinal chemistry ,0104 chemical sciences ,Inorganic Chemistry ,chemistry.chemical_compound ,QD901-999 ,General Materials Science - Abstract
C18H15N3O6 ⋅ C2H6OS, P21/c (no. 14), a = 15.762(9) Å, v = 6.013(4) Å, c = 22.264(11) Å, β = 103.522(19)°, V = 2052(2) Å3, Z = 4, R gt(F) = 0.0484, wR ref(F 2) = 0.1348, T = 296(2) K.
- Published
- 2018
Catalog
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