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For Rapa Nui (Easter Island) and its largest islet, Motu Nui, the change of the species assemblage over time was analysed, and a trait‐based approach to evaluate the potential losses in seabird function across the past centuries was applied. At a finer scale, the seasonal changes in seabird species composition in the current seabird assemblage was assessed to better understand the dynamics of the long‐term inferred patterns.For Rapa Nui, the composition of the seabird assemblage between the prehistorical, historical, and current time has changed significantly. The most critical change, probably associated with human colonization, was observed between prehistoric and current times. The current diminished number of nesting seabird species was probably the result of local extirpation without evidence of colonization by new species.For Motu Nui, changes in species composition were also followed by changes in trait structure, which were smaller than observed in Rapa Nui. This is probably due to the presence of a relatively high number of related species (i.e. Procellariids) with high similarities in their foraging behaviour.The nesting seabird assemblages in Rapa Nui and Motu Nui differ in exposure to risk; thus, conservation strategies applied to the islands should be planned on a fine spatial scale. For Rapa Nui, which is an urban wildlife area with several invasive species and a low number of remaining native seabird species, management should focus on fencing and pets control. For Motu Nui, management should instead focus on the establishment of quarantine and other biosecurity tools to avoid both the entry and proliferation of new invasive species. [ABSTRACT FROM AUTHOR]