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11. Towards taxonomy, phylogeography and ecology of Solenopsora species (Leprocaulaceae) – elements with a strong link to Mediterranean-type ecosystems

Author

Fačkovcová, Zuzana, Zozomová Lihová, Judita, Slovák, Marek, Kučera, Jaromír, Piknová, Katarína, Timdal, Einar, MARTELLOS, Stefano, ONGARO, SILVIA, GUTTOVA, ANNA, Thorsten Lumbsch, Marko Hyvärinen, Leena Myllys, Volker Otte, Sergio Pérez-Ortega, Juha Pykälä, Jouko Rikkinen, Soili Stenroos, Ave Suija, Mats Wedin, Fačkovcová, Zuzana, Zozomová Lihová, Judita, Slovák, Marek, Kučera, Jaromír, Piknová, Katarína, Timdal, Einar, Martellos, Stefano, Ongaro, Silvia, and Guttova, Anna

Subjects
taxonomy, Solenopsora, lichen, phylogeography, ecology
Abstract

Mediterranean ecosystems are well-known for high species richness, which has been triggered by the interplay among various environmental and bioclimatic factors. Despite a lot of data on evolution and ecology of Mediterranean biota, little is known about symbiotic systems like lichens. We analysed material from all the Mediterranean area, together with specimens from North America and Australia, aiming at investigating: 1) phylogenetic position of the genus Solenopsora within Leprocaulales, proper delimitation of which is needed (nrITS, Mcm7, PKS sequence data); 2) phylogeography of S. candicans (nrITS and β-tubuline sequences), and 3) species ecology (by mean of ecological niche modelling). Preliminary analyses of phylogeographic dataset suggest several centres of genetic diversity, mostly in the Mediterranean area. Two larger groups of ubiquitous, and more ancestral ribotypes occur across Europe. Certain accessions of S. candicans from Turkey and Morocco are more closely related, forming a well delimited lineage, which is clearly distinct from the rest of the material. Unexpectedly, samples from Pannonia are heterogeneous. This might indicate that Pannonia has represented an important connection between centres of species distribution in the Mediterranean, and in the Western Carpathians, representing northern periphery of distribution range, where few rare ribotypes were also revealed.

Published
2016

12. Considerations and consequences of allowing DNA sequence data as types of fungal taxa

Author

Zamora, Juan Carlos, Svensson, Måns, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Luis, Geml, Jozsef, Rosling, Anna, Adamcik, Slavomir, Ahti, Teuvo, Aime, M. Catherine, Ainsworth, A. Martyn, Albert, Laszlo, Alberto, Edgardo, Garcia, Alberto Altes, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begona, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonin, Vladimir, Aoki, Takayuki, Aptroot, Andre, Argaud, Didier, Sosa, Blanca Imelda Arguello, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Boris, Atienza, Violeta, Bandini, Ditte, Baptista-Ferreira, Joao Luis, Baral, Hans-Otto, Baroni, Tim, Barreto, Robert Weingart, Baker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellu, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajos, Beresova-Guttova, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu, Bizio, Enrico, Bjork, Curtis, Boekhout, Teun, Boertmann, David, Bohning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovicka, Jan, Brandrud, Tor Erik, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, Burdsall, Harold H., Jr., Buyck, Bart, Burgaz, Ana Rosa, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbo, Joaquim, Carbone, Matteo, Castaneda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gilles, Courtecuisse, Regis, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., da Silva, Gladstone Alves, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dammrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, Bonzi, Barbara De Madrignac, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Balint, Dios, Maria Martha, Divakar, Pradeep Kumar, Douanla-Meli, Clovis, Douglas, Brian, Drechsler-Santos, Elisandro Ricardo, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventos, Fernando, Salazar, Javier Angel Etayo, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Peter, Flakus, Adam, Fos, Simon, Fournier, Jacques, Fraiture, Andre, Franchi, Paolo, Molano, Ana Esperanza Franco, Friebes, Gernot, Frisch, Andreas, Fryday, Alan, Furci, Giuliana, Marquez, Ricardo Galan, Garbelotto, Matteo, Garcia-Martin, Joaquina Maria, Otalora, Monica A. Garcia, Sanchez, Dania Garcia, Gardiennet, Alain, Garnica, Sigisfredo, Benavent, Isaac Garrido, Gates, Genevieve, Gerlach, Alice da Cruz Lima, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gerald, Gueidan, Cecile, Gulden, Gro, Gusmao, Luis F. P., Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nils, Halling, Roy E., Hansen, Karen, Harder, Christoffer Bugge, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphael, Hobart, Caroline, Hoffmeister, Mascha, Hoiland, Klaus, Holec, Jan, Holien, Hakon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivancevic, Boris, Jagers, Marian, Jaklitsch, Walter, Jansen, AnnaElise, Jayawardena, Ruvishika S., Jeppesen, Thomas Stjernegaard, Jeppson, Mikael, Johnston, Peter, Jorgensen, Per Magnus, Karnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintaras, Karadelev, Mitko, Kasuya, Taiga, Kautmanova, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Daniel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolarik, Miroslav, Koljalg, Urmas, Kosuthova, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondrej, Kout, Jiri, Kovacs, Gabor M., Kriz, Martin, Kruys, Asa, Kudera, Viktor, Kudzma, Linas, Kuhar, Francisco, Kukwa, Martin, Kumar, T. K. Arun, Kunca, Vladimir, Kusan, Ivana, Kuyper, Thomas W., Lado, Carlos, Laessoe, Thomas, Laine, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindstrom, Hakan, Liu, Xingzhong, Hernandez, Regulo Carlos Llarena, Llop, Esteve, Locsmandi, Csaba, Lodge, Deborah Jean, Loizides, Michael, Lokos, Laszlo, Luangsa-ard, Jennifer, Luderitz, Matthias, Lumbsch, Thorsten, Lutz, Matthias, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Mann-Felix, Yasmina, Marques, Guilhermina, Martinez-Gil, Ruben, Marson, Guy, Mata, Gerardo, Matheny, P. Brandon, Mathiassen, Geir Harald, Matocec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mesic, Armin, Methven, Andrew S., Miettinen, Otto, Romero, Ana M. Millanes, Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asuncion, Muggia, Lucia, Gonzalez, Guillermo Munoz, Myllys, Leena, Nagy, Istvan, Nagy, Laszlo G., Neves, Maria Alice, Niemela, Tuomo, Nimis, Pier Luigi, Niveiro, Nicolas, Noordeloos, Machiel E., Nordin, Anders, Noumeur, Sara Raouia, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Fiuza, Patricia Oliveira, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pal-Fam, Ferenc, Palacio, Melissa, Palice, Zdenek, Papp, Viktor, Partel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Pereira, Olinto Liparini, Daniels, Pablo Perez, Capella, Miguel A. Perez-De-Gregorio, del Amo, Carlos Manuel Perez, Gorjon, Sergio Perez, Perez-Ortega, Sergio, Perez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piatek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Esquivel, Juan Pablo Pinzon, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Alvaro, Maria Prieto, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Luis, Rambold, Gerhard, Ramirez, Natalia A., Raja, Huzefa, Raspe, Olivier, Raymundo, Tania, Reblova, Martina, Rebriev, Yury A., Garcia, Juan de Dios Reyes, Ripoll, Miguel Angel Ribes, Richard, Franck, Richardson, Mike J., Rico, Victor J., Robledo, Gerardo Lucio, Barbosa, Flavia Rodrigues, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Casas, Luis Rubio, Rusevska, Katerina, Saar, Gunter, Saar, Irja, Salcedo, Isabel, Martinez, Sergio M. Salcedo, Montoya, Carlos A. Salvador, Sanchez-Ramirez, Santiago, Sandoval-Sierra, J. Vladimir, Santamaria, Sergi, Monteiro, Josiane Santana, Schroers, Hans Josef, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Sevcikova, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klaus, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu, Swierkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudiere, Adrien, Tedebrand, Jan-Olof, Lahoz, Raul Tena, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Goren, Thus, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalcec, Zdenko, Tonsberg, Tor, Trichies, Gerard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Sosa, Miguel Ulloa, Urcelay, Carlos, Valade, Francois, Garza, Ricardo Valenzuela, van den Boom, Pieter, Van Vooren, Nicolas, Vasco-Palacios, Aida M., Vauras, Jukka, Santos, Juan Manuel Velasco, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mats, Weholt, Oyvind, Westberg, Martin, Yurchenko, Eugene, Zehnalek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., Ekman, Stefan, Zamora, Juan Carlos, Svensson, Måns, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Luis, Geml, Jozsef, Rosling, Anna, Adamcik, Slavomir, Ahti, Teuvo, Aime, M. Catherine, Ainsworth, A. Martyn, Albert, Laszlo, Alberto, Edgardo, Garcia, Alberto Altes, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begona, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonin, Vladimir, Aoki, Takayuki, Aptroot, Andre, Argaud, Didier, Sosa, Blanca Imelda Arguello, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Boris, Atienza, Violeta, Bandini, Ditte, Baptista-Ferreira, Joao Luis, Baral, Hans-Otto, Baroni, Tim, Barreto, Robert Weingart, Baker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellu, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajos, Beresova-Guttova, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu, Bizio, Enrico, Bjork, Curtis, Boekhout, Teun, Boertmann, David, Bohning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovicka, Jan, Brandrud, Tor Erik, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, Burdsall, Harold H., Jr., Buyck, Bart, Burgaz, Ana Rosa, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbo, Joaquim, Carbone, Matteo, Castaneda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gilles, Courtecuisse, Regis, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., da Silva, Gladstone Alves, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dammrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, Bonzi, Barbara De Madrignac, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Balint, Dios, Maria Martha, Divakar, Pradeep Kumar, Douanla-Meli, Clovis, Douglas, Brian, Drechsler-Santos, Elisandro Ricardo, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventos, Fernando, Salazar, Javier Angel Etayo, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Peter, Flakus, Adam, Fos, Simon, Fournier, Jacques, Fraiture, Andre, Franchi, Paolo, Molano, Ana Esperanza Franco, Friebes, Gernot, Frisch, Andreas, Fryday, Alan, Furci, Giuliana, Marquez, Ricardo Galan, Garbelotto, Matteo, Garcia-Martin, Joaquina Maria, Otalora, Monica A. Garcia, Sanchez, Dania Garcia, Gardiennet, Alain, Garnica, Sigisfredo, Benavent, Isaac Garrido, Gates, Genevieve, Gerlach, Alice da Cruz Lima, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gerald, Gueidan, Cecile, Gulden, Gro, Gusmao, Luis F. P., Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nils, Halling, Roy E., Hansen, Karen, Harder, Christoffer Bugge, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphael, Hobart, Caroline, Hoffmeister, Mascha, Hoiland, Klaus, Holec, Jan, Holien, Hakon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivancevic, Boris, Jagers, Marian, Jaklitsch, Walter, Jansen, AnnaElise, Jayawardena, Ruvishika S., Jeppesen, Thomas Stjernegaard, Jeppson, Mikael, Johnston, Peter, Jorgensen, Per Magnus, Karnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintaras, Karadelev, Mitko, Kasuya, Taiga, Kautmanova, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Daniel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolarik, Miroslav, Koljalg, Urmas, Kosuthova, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondrej, Kout, Jiri, Kovacs, Gabor M., Kriz, Martin, Kruys, Asa, Kudera, Viktor, Kudzma, Linas, Kuhar, Francisco, Kukwa, Martin, Kumar, T. K. Arun, Kunca, Vladimir, Kusan, Ivana, Kuyper, Thomas W., Lado, Carlos, Laessoe, Thomas, Laine, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindstrom, Hakan, Liu, Xingzhong, Hernandez, Regulo Carlos Llarena, Llop, Esteve, Locsmandi, Csaba, Lodge, Deborah Jean, Loizides, Michael, Lokos, Laszlo, Luangsa-ard, Jennifer, Luderitz, Matthias, Lumbsch, Thorsten, Lutz, Matthias, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Mann-Felix, Yasmina, Marques, Guilhermina, Martinez-Gil, Ruben, Marson, Guy, Mata, Gerardo, Matheny, P. Brandon, Mathiassen, Geir Harald, Matocec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mesic, Armin, Methven, Andrew S., Miettinen, Otto, Romero, Ana M. Millanes, Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asuncion, Muggia, Lucia, Gonzalez, Guillermo Munoz, Myllys, Leena, Nagy, Istvan, Nagy, Laszlo G., Neves, Maria Alice, Niemela, Tuomo, Nimis, Pier Luigi, Niveiro, Nicolas, Noordeloos, Machiel E., Nordin, Anders, Noumeur, Sara Raouia, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Fiuza, Patricia Oliveira, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pal-Fam, Ferenc, Palacio, Melissa, Palice, Zdenek, Papp, Viktor, Partel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Pereira, Olinto Liparini, Daniels, Pablo Perez, Capella, Miguel A. Perez-De-Gregorio, del Amo, Carlos Manuel Perez, Gorjon, Sergio Perez, Perez-Ortega, Sergio, Perez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piatek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Esquivel, Juan Pablo Pinzon, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Alvaro, Maria Prieto, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Luis, Rambold, Gerhard, Ramirez, Natalia A., Raja, Huzefa, Raspe, Olivier, Raymundo, Tania, Reblova, Martina, Rebriev, Yury A., Garcia, Juan de Dios Reyes, Ripoll, Miguel Angel Ribes, Richard, Franck, Richardson, Mike J., Rico, Victor J., Robledo, Gerardo Lucio, Barbosa, Flavia Rodrigues, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Casas, Luis Rubio, Rusevska, Katerina, Saar, Gunter, Saar, Irja, Salcedo, Isabel, Martinez, Sergio M. Salcedo, Montoya, Carlos A. Salvador, Sanchez-Ramirez, Santiago, Sandoval-Sierra, J. Vladimir, Santamaria, Sergi, Monteiro, Josiane Santana, Schroers, Hans Josef, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Sevcikova, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klaus, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu, Swierkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudiere, Adrien, Tedebrand, Jan-Olof, Lahoz, Raul Tena, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Goren, Thus, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalcec, Zdenko, Tonsberg, Tor, Trichies, Gerard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Sosa, Miguel Ulloa, Urcelay, Carlos, Valade, Francois, Garza, Ricardo Valenzuela, van den Boom, Pieter, Van Vooren, Nicolas, Vasco-Palacios, Aida M., Vauras, Jukka, Santos, Juan Manuel Velasco, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mats, Weholt, Oyvind, Westberg, Martin, Yurchenko, Eugene, Zehnalek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., and Ekman, Stefan

Abstract

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.

Published
2018

13. Considerations and consequences of allowing DNA sequence data as types of fungal taxa

Author

Zamora, J. C. (Juan Carlos), Svensson, M. (Mans), Kirschner, R. (Roland), Olariaga, I. (Ibai), Ryman, S. (Svengunnar), Alberto Parra, L. (Luis), Geml, J. (Jozsef), Rosling, A. (Anna), Adamcik, S. (Slavomir), Ahti, T. (Teuvo), Aime, M. C. (M. Catherine), Ainsworth, A. M. (A. Martyn), Albert, L. (Laszlo), Alberto, E. (Edgardo), Garcia, A. A. (Alberto Altes), Ageev, D. (Dmitry), Agerer, R. (Reinhard), Aguirre-Hudson, B. (Begona), Ammirati, J. (Joe), Andersson, H. (Harry), Angelini, C. (Claudio), Antonin, V. (Vladimir), Aoki, T. (Takayuki), Aptroot, A. (Andre), Argaud, D. (Didier), Sosa, B. I. (Blanca Imelda Arguello), Aronsen, A. (Arne), Arup, U. (Ulf), Asgari, B. (Bita), Assyov, B. (Boris), Atienza, V. (Violeta), Bandini, D. (Ditte), Baptista-Ferreira, J. L. (Joao Luis), Baral, H.-O. (Hans-Otto), Baroni, T. (Tim), Barreto, R. W. (Robert Weingart), Baker, H. (Henry), Bell, A. (Ann), Bellanger, J.-M. (Jean-Michel), Bellu, F. (Francesco), Bemmann, M. (Martin), Bendiksby, M. (Mika), Bendiksen, E. (Egil), Bendiksen, K. (Katriina), Benedek, L. (Lajos), Beresova-Guttova, A. (Anna), Berger, F. (Franz), Berndt, R. (Reinhard), Bernicchia, A. (Annarosa), Biketova, A. Y. (Alona Yu), Bizio, E. (Enrico), Bjork, C. (Curtis), Boekhout, T. (Teun), Boertmann, D. (David), Bohning, T. (Tanja), Boittin, F. (Florent), Boluda, C. G. (Carlos G.), Boomsluiter, M. W. (Menno W.), Borovicka, J. (Jan), Brandrud, T. E. (Tor Erik), Braun, U. (Uwe), Brodo, I. (Irwin), Bulyonkova, T. (Tatiana), Burdsall, H. H. (Harold H., Jr.), Buyck, B. (Bart), Burgaz, A. R. (Ana Rosa), Calatayud, V. (Vicent), Callac, P. (Philippe), Campo, E. (Emanuele), Candusso, M. (Massimo), Capoen, B. (Brigitte), Carbo, J. (Joaquim), Carbone, M. (Matteo), Castaneda-Ruiz, R. F. (Rafael F.), Castellano, M. A. (Michael A.), Chen, J. (Jie), Clerc, P. (Philippe), Consiglio, G. (Giovanni), Corriol, G. (Gilles), Courtecuisse, R. (Regis), Crespo, A. (Ana), Cripps, C. (Cathy), Crous, P. W. (Pedro W.), da Silva, G. A. (Gladstone Alves), da Silva, M. (Meiriele), Dam, M. (Marjo), Dam, N. (Nico), Dammrich, F. (Frank), Das, K. (Kanad), Davies, L. (Linda), De Crop, E. (Eske), De Kesel, A. (Andre), De Lange, R. (Ruben), Bonzi, B. D. (Barbara De Madrignac), dela Cruz, T. E. (Thomas Edison E.), Delgat, L. (Lynn), Demoulin, V. (Vincent), Desjardin, D. E. (Dennis E.), Diederich, P. (Paul), Dima, B. (Balint), Dios, M. M. (Maria Martha), Divakar, P. K. (Pradeep Kumar), Douanla-Meli, C. (Clovis), Douglas, B. (Brian), Drechsler-Santos, E. R. (Elisandro Ricardo), Dyer, P. S. (Paul S.), Eberhardt, U. (Ursula), Ertz, D. (Damien), Esteve-Raventos, F. (Fernando), Salazar, J. A. (Javier Angel Etayo), Evenson, V. (Vera), Eyssartier, G. (Guillaume), Farkas, E. (Edit), Favre, A. (Alain), Fedosova, A. G. (Anna G.), Filippa, M. (Mario), Finy, P. (Peter), Flakus, A. (Adam), Fos, S. (Simon), Fournier, J. (Jacques), Fraiture, A. (Andre), Franchi, P. (Paolo), Molano, A. E. (Ana Esperanza Franco), Friebes, G. (Gernot), Frisch, A. (Andreas), Fryday, A. (Alan), Furci, G. (Giuliana), Marquez, R. G. (Ricardo Galan), Garbelotto, M. (Matteo), Garcia-Martin, J. M. (Joaquina Maria), Otalora, M. A. (Monica A. Garcia), Sanchez, D. G. (Dania Garcia), Gardiennet, A. (Alain), Garnica, S. (Sigisfredo), Benavent, I. G. (Isaac Garrido), Gates, G. (Genevieve), Gerlach, A. d. (Alice da Cruz Lima), Ghobad-Nejhad, M. (Masoomeh), Gibertoni, T. B. (Tatiana B.), Grebenc, T. (Tine), Greilhuber, I. (Irmgard), Grishkan, B. (Bella), Groenewald, J. Z. (Johannes Z.), Grube, M. (Martin), Gruhn, G. (Gerald), Gueidan, C. (Cecile), Gulden, G. (Gro), Gusmao, L. F. (Luis F. P.), Hafellner, J. (Josef), Hairaud, M. (Michel), Halama, M. (Marek), Hallenberg, N. (Nils), Halling, R. E. (Roy E.), Hansen, K. (Karen), Harder, C. B. (Christoffer Bugge), Heilmann-Clausen, J. (Jacob), Helleman, S. (Stip), Henriot, A. (Alain), Hernandez-Restrepo, M. (Margarita), Herve, R. (Raphael), Hobart, C. (Caroline), Hoffmeister, M. (Mascha), Hoiland, K. (Klaus), Holec, J. (Jan), Holien, H. (Hakon), Hughes, K. (Karen), Hubka, V. (Vit), Huhtinen, S. (Seppo), Ivancevic, B. (Boris), Jagers, M. (Marian), Jaklitsch, W. (Walter), Jansen, A. (AnnaElise), Jayawardena, R. S. (Ruvishika S.), Jeppesen, T. S. (Thomas Stjernegaard), Jeppson, M. (Mikael), Johnston, P. (Peter), Jorgensen, P. M. (Per Magnus), Karnefelt, I. (Ingvar), Kalinina, L. B. (Liudmila B.), Kantvilas, G. (Gintaras), Karadelev, M. (Mitko), Kasuya, T. (Taiga), Kautmanova, I. (Ivona), Kerrigan, R. W. (Richard W.), Kirchmair, M. (Martin), Kiyashko, A. (Anna), Knapp, D. G. (Daniel G.), Knudsen, H. (Henning), Knudsen, K. (Kerry), Knutsson, T. (Tommy), Kolarik, M. (Miroslav), Koljalg, U. (Urmas), Kosuthova, A. (Alica), Koszka, A. (Attila), Kotiranta, H. (Heikki), Kotkova, V. (Vera), Koukol, O. (Ondrej), Kout, J. (Jiri), Kovacs, G. M. (Gabor M.), Kriz, M. (Martin), Kruys, A. (Asa), Kudera, V. (Viktor), Kudzma, L. (Linas), Kuhar, F. (Francisco), Kukwa, M. (Martin), Kumar, T. K. (T. K. Arun), Kunca, V. (Vladimir), Kusan, I. (Ivana), Kuyper, T. W. (Thomas W.), Lado, C. (Carlos), Laessoe, T. (Thomas), Laine, P. (Patrice), Langer, E. (Ewald), Larsson, E. (Ellen), Larsson, K.-H. (Karl-Henrik), Laursen, G. (Gary), Lechat, C. (Christian), Lee, S. (Serena), Lendemer, J. C. (James C.), Levin, L. (Laura), Lindemann, U. (Uwe), Lindstrom, H. (Hakan), Liu, X. (Xingzhong), Hernandez, R. C. (Regulo Carlos Llarena), Llop, E. (Esteve), Locsmandi, C. (Csaba), Lodge, D. J. (Deborah Jean), Loizides, M. (Michael), Lokos, L. (Laszlo), Luangsa-ard, J. (Jennifer), Luderitz, M. (Matthias), Lumbsch, T. (Thorsten), Lutz, M. (Matthias), Mahoney, D. (Dan), Malysheva, E. (Ekaterina), Malysheva, V. (Vera), Manimohan, P. (Patinjareveettil), Mann-Felix, Y. (Yasmina), Marques, G. (Guilhermina), Martinez-Gil, R. (Ruben), Marson, G. (Guy), Mata, G. (Gerardo), Matheny, P. B. (P. Brandon), Mathiassen, G. H. (Geir Harald), Matocec, N. (Neven), Mayrhofer, H. (Helmut), Mehrabi, M. (Mehdi), Melo, I. (Ireneia), Mesic, A. (Armin), Methven, A. S. (Andrew S.), Miettinen, O. (Otto), Romero, A. M. (Ana M. Millanes), Miller, A. N. (Andrew N.), Mitchell, J. K. (James K.), Moberg, R. (Roland), Moreau, P.-A. (Pierre-Arthur), Moreno, G. (Gabriel), Morozova, O. (Olga), Morte, A. (Asuncion), Muggia, L. (Lucia), Gonzalez, G. M. (Guillermo Munoz), Myllys, L. (Leena), Nagy, I. (Istvan), Nagy, L. G. (Laszlo G.), Neves, M. A. (Maria Alice), Niemela, T. (Tuomo), Nimis, P. L. (Pier Luigi), Niveiro, N. (Nicolas), Noordeloos, M. E. (Machiel E.), Nordin, A. (Anders), Noumeur, S. R. (Sara Raouia), Novozhilov, Y. (Yuri), Nuytinck, J. (Jorinde), Ohenoja, E. (Esteri), Fiuza, P. O. (Patricia Oliveira), Orange, A. (Alan), Ordynets, A. (Alexander), Ortiz-Santana, B. (Beatriz), Pacheco, L. (Leticia), Pal-Fam, F. (Ferenc), Palacio, M. (Melissa), Palice, Z. (Zdenek), Papp, V. (Viktor), Partel, K. (Kadri), Pawlowska, J. (Julia), Paz, A. (Aurelia), Peintner, U. (Ursula), Pennycook, S. (Shaun), Pereira, O. L. (Olinto Liparini), Daniels, P. P. (Pablo Perez), Capella, M. A. (Miguel A. Perez-De-Gregorio), del Amo, C. M. (Carlos Manuel Perez), Gorjon, S. P. (Sergio Perez), Perez-Ortega, S. (Sergio), Perez-Vargas, I. (Israel), Perry, B. A. (Brian A.), Petersen, J. H. (Jens H.), Petersen, R. H. (Ronald H.), Pfister, D. H. (Donald H.), Phukhamsakda, C. (Chayanard), Piatek, M. (Marcin), Piepenbring, M. (Meike), Pino-Bodas, R. (Raquel), Esquivel, J. P. (Juan Pablo Pinzon), Pirot, P. (Paul), Popov, E. S. (Eugene S.), Popoff, O. (Orlando), Alvaro, M. P. (Maria Prieto), Printzen, C. (Christian), Psurtseva, N. (Nadezhda), Purahong, W. (Witoon), Quijada, L. (Luis), Rambold, G. (Gerhard), Ramirez, N. A. (Natalia A.), Raja, H. (Huzefa), Raspe, O. (Olivier), Raymundo, T. (Tania), Reblova, M. (Martina), Rebriev, Y. A. (Yury A.), Garcia, J. d. (Juan de Dios Reyes), Ripoll, M. A. (Miguel Angel Ribes), Richard, F. (Franck), Richardson, M. J. (Mike J.), Rico, V. J. (Victor J.), Robledo, G. L. (Gerardo Lucio), Barbosa, F. R. (Flavia Rodrigues), Rodriguez-Caycedo, C. (Cristina), Rodriguez-Flakus, P. (Pamela), Ronikier, A. (Anna), Casas, L. R. (Luis Rubio), Rusevska, K. (Katerina), Saar, G. (Gunter), Saar, I. (Irja), Salcedo, I. (Isabel), Martinez, S. M. (Sergio M. Salcedo), Montoya, C. A. (Carlos A. Salvador), Sanchez-Ramirez, S. (Santiago), Sandoval-Sierra, J. V. (J. Vladimir), Santamaria, S. (Sergi), Monteiro, J. S. (Josiane Santana), Schroers, H. J. (Hans Josef), Schulz, B. (Barbara), Schmidt-Stohn, G. (Geert), Schumacher, T. (Trond), Senn-Irlet, B. (Beatrice), Sevcikova, H. (Hana), Shchepin, O. (Oleg), Shirouzu, T. (Takashi), Shiryaev, A. (Anton), Siepe, K. (Klaus), Sir, E. B. (Esteban B.), Sohrabi, M. (Mohammad), Soop, K. (Karl), Spirin, V. (Viacheslav), Spribille, T. (Toby), Stadler, M. (Marc), Stalpers, J. (Joost), Stenroos, S. (Soili), Suija, A. (Ave), Sunhede, S. (Stellan), Svantesson, S. (Sten), Svensson, S. (Sigvard), Svetasheva, T. Y. (Tatyana Yu), Swierkosz, K. (Krzysztof), Tamm, H. (Heidi), Taskin, H. (Hatira), Taudiere, A. (Adrien), Tedebrand, J.-O. (Jan-Olof), Lahoz, R. T. (Raul Tena), Temina, M. (Marina), Thell, A. (Arne), Thines, M. (Marco), Thor, G. (Goren), Thus, H. (Holger), Tibell, L. (Leif), Tibell, S. (Sanja), Timdal, E. (Einar), Tkalcec, Z. (Zdenko), Tonsberg, T. (Tor), Trichies, G. (Gerard), Triebel, D. (Dagmar), Tsurykau, A. (Andrei), Tulloss, R. E. (Rodham E.), Tuovinen, V. (Veera), Sosa, M. U. (Miguel Ulloa), Urcelay, C. (Carlos), Valade, F. (Francois), Garza, R. V. (Ricardo Valenzuela), van den Boom, P. (Pieter), Van Vooren, N. (Nicolas), Vasco-Palacios, A. M. (Aida M.), Vauras, J. (Jukka), Santos, J. M. (Juan Manuel Velasco), Vellinga, E. (Else), Verbeken, A. (Annemieke), Vetlesen, P. (Per), Vizzini, A. (Alfredo), Voglmayr, H. (Hermann), Volobuev, S. (Sergey), von Brackel, W. (Wolfgang), Voronina, E. (Elena), Walther, G. (Grit), Watling, R. (Roy), Weber, E. (Evi), Wedin, M. (Mats), Weholt, O. (Oyvind), Westberg, M. (Martin), Yurchenko, E. (Eugene), Zehnalek, P. (Petr), Zhang, H. (Huang), Zhurbenko, M. P. (Mikhail P.), Ekmani, S. (Stefan), Zamora, J. C. (Juan Carlos), Svensson, M. (Mans), Kirschner, R. (Roland), Olariaga, I. (Ibai), Ryman, S. (Svengunnar), Alberto Parra, L. (Luis), Geml, J. (Jozsef), Rosling, A. (Anna), Adamcik, S. (Slavomir), Ahti, T. (Teuvo), Aime, M. C. (M. Catherine), Ainsworth, A. M. (A. Martyn), Albert, L. (Laszlo), Alberto, E. (Edgardo), Garcia, A. A. (Alberto Altes), Ageev, D. (Dmitry), Agerer, R. (Reinhard), Aguirre-Hudson, B. (Begona), Ammirati, J. (Joe), Andersson, H. (Harry), Angelini, C. (Claudio), Antonin, V. (Vladimir), Aoki, T. (Takayuki), Aptroot, A. (Andre), Argaud, D. (Didier), Sosa, B. I. (Blanca Imelda Arguello), Aronsen, A. (Arne), Arup, U. (Ulf), Asgari, B. (Bita), Assyov, B. (Boris), Atienza, V. (Violeta), Bandini, D. (Ditte), Baptista-Ferreira, J. L. (Joao Luis), Baral, H.-O. (Hans-Otto), Baroni, T. (Tim), Barreto, R. W. (Robert Weingart), Baker, H. (Henry), Bell, A. (Ann), Bellanger, J.-M. (Jean-Michel), Bellu, F. (Francesco), Bemmann, M. (Martin), Bendiksby, M. (Mika), Bendiksen, E. (Egil), Bendiksen, K. (Katriina), Benedek, L. (Lajos), Beresova-Guttova, A. (Anna), Berger, F. (Franz), Berndt, R. (Reinhard), Bernicchia, A. (Annarosa), Biketova, A. Y. (Alona Yu), Bizio, E. (Enrico), Bjork, C. (Curtis), Boekhout, T. (Teun), Boertmann, D. (David), Bohning, T. (Tanja), Boittin, F. (Florent), Boluda, C. G. (Carlos G.), Boomsluiter, M. W. (Menno W.), Borovicka, J. (Jan), Brandrud, T. E. (Tor Erik), Braun, U. (Uwe), Brodo, I. (Irwin), Bulyonkova, T. (Tatiana), Burdsall, H. H. (Harold H., Jr.), Buyck, B. (Bart), Burgaz, A. R. (Ana Rosa), Calatayud, V. (Vicent), Callac, P. (Philippe), Campo, E. (Emanuele), Candusso, M. (Massimo), Capoen, B. (Brigitte), Carbo, J. (Joaquim), Carbone, M. (Matteo), Castaneda-Ruiz, R. F. (Rafael F.), Castellano, M. A. (Michael A.), Chen, J. (Jie), Clerc, P. (Philippe), Consiglio, G. (Giovanni), Corriol, G. (Gilles), Courtecuisse, R. (Regis), Crespo, A. (Ana), Cripps, C. (Cathy), Crous, P. W. (Pedro W.), da Silva, G. A. (Gladstone Alves), da Silva, M. (Meiriele), Dam, M. (Marjo), Dam, N. (Nico), Dammrich, F. (Frank), Das, K. (Kanad), Davies, L. (Linda), De Crop, E. (Eske), De Kesel, A. (Andre), De Lange, R. (Ruben), Bonzi, B. D. (Barbara De Madrignac), dela Cruz, T. E. (Thomas Edison E.), Delgat, L. (Lynn), Demoulin, V. (Vincent), Desjardin, D. E. (Dennis E.), Diederich, P. (Paul), Dima, B. (Balint), Dios, M. M. (Maria Martha), Divakar, P. K. (Pradeep Kumar), Douanla-Meli, C. (Clovis), Douglas, B. (Brian), Drechsler-Santos, E. R. (Elisandro Ricardo), Dyer, P. S. (Paul S.), Eberhardt, U. (Ursula), Ertz, D. (Damien), Esteve-Raventos, F. (Fernando), Salazar, J. A. (Javier Angel Etayo), Evenson, V. (Vera), Eyssartier, G. (Guillaume), Farkas, E. (Edit), Favre, A. (Alain), Fedosova, A. G. (Anna G.), Filippa, M. (Mario), Finy, P. (Peter), Flakus, A. (Adam), Fos, S. (Simon), Fournier, J. (Jacques), Fraiture, A. (Andre), Franchi, P. (Paolo), Molano, A. E. (Ana Esperanza Franco), Friebes, G. (Gernot), Frisch, A. (Andreas), Fryday, A. (Alan), Furci, G. (Giuliana), Marquez, R. G. (Ricardo Galan), Garbelotto, M. (Matteo), Garcia-Martin, J. M. (Joaquina Maria), Otalora, M. A. (Monica A. Garcia), Sanchez, D. G. (Dania Garcia), Gardiennet, A. (Alain), Garnica, S. (Sigisfredo), Benavent, I. G. (Isaac Garrido), Gates, G. (Genevieve), Gerlach, A. d. (Alice da Cruz Lima), Ghobad-Nejhad, M. (Masoomeh), Gibertoni, T. B. (Tatiana B.), Grebenc, T. (Tine), Greilhuber, I. (Irmgard), Grishkan, B. (Bella), Groenewald, J. Z. (Johannes Z.), Grube, M. (Martin), Gruhn, G. (Gerald), Gueidan, C. (Cecile), Gulden, G. (Gro), Gusmao, L. F. (Luis F. P.), Hafellner, J. (Josef), Hairaud, M. (Michel), Halama, M. (Marek), Hallenberg, N. (Nils), Halling, R. E. (Roy E.), Hansen, K. (Karen), Harder, C. B. (Christoffer Bugge), Heilmann-Clausen, J. (Jacob), Helleman, S. (Stip), Henriot, A. (Alain), Hernandez-Restrepo, M. (Margarita), Herve, R. (Raphael), Hobart, C. (Caroline), Hoffmeister, M. (Mascha), Hoiland, K. (Klaus), Holec, J. (Jan), Holien, H. (Hakon), Hughes, K. (Karen), Hubka, V. (Vit), Huhtinen, S. (Seppo), Ivancevic, B. (Boris), Jagers, M. (Marian), Jaklitsch, W. (Walter), Jansen, A. (AnnaElise), Jayawardena, R. S. (Ruvishika S.), Jeppesen, T. S. (Thomas Stjernegaard), Jeppson, M. (Mikael), Johnston, P. (Peter), Jorgensen, P. M. (Per Magnus), Karnefelt, I. (Ingvar), Kalinina, L. B. (Liudmila B.), Kantvilas, G. (Gintaras), Karadelev, M. (Mitko), Kasuya, T. (Taiga), Kautmanova, I. (Ivona), Kerrigan, R. W. (Richard W.), Kirchmair, M. (Martin), Kiyashko, A. (Anna), Knapp, D. G. (Daniel G.), Knudsen, H. (Henning), Knudsen, K. (Kerry), Knutsson, T. (Tommy), Kolarik, M. (Miroslav), Koljalg, U. (Urmas), Kosuthova, A. (Alica), Koszka, A. (Attila), Kotiranta, H. (Heikki), Kotkova, V. (Vera), Koukol, O. (Ondrej), Kout, J. (Jiri), Kovacs, G. M. (Gabor M.), Kriz, M. (Martin), Kruys, A. (Asa), Kudera, V. (Viktor), Kudzma, L. (Linas), Kuhar, F. (Francisco), Kukwa, M. (Martin), Kumar, T. K. (T. K. Arun), Kunca, V. (Vladimir), Kusan, I. (Ivana), Kuyper, T. W. (Thomas W.), Lado, C. (Carlos), Laessoe, T. (Thomas), Laine, P. (Patrice), Langer, E. (Ewald), Larsson, E. (Ellen), Larsson, K.-H. (Karl-Henrik), Laursen, G. (Gary), Lechat, C. (Christian), Lee, S. (Serena), Lendemer, J. C. (James C.), Levin, L. (Laura), Lindemann, U. (Uwe), Lindstrom, H. (Hakan), Liu, X. (Xingzhong), Hernandez, R. C. (Regulo Carlos Llarena), Llop, E. (Esteve), Locsmandi, C. (Csaba), Lodge, D. J. (Deborah Jean), Loizides, M. (Michael), Lokos, L. (Laszlo), Luangsa-ard, J. (Jennifer), Luderitz, M. (Matthias), Lumbsch, T. (Thorsten), Lutz, M. (Matthias), Mahoney, D. (Dan), Malysheva, E. (Ekaterina), Malysheva, V. (Vera), Manimohan, P. (Patinjareveettil), Mann-Felix, Y. (Yasmina), Marques, G. (Guilhermina), Martinez-Gil, R. (Ruben), Marson, G. (Guy), Mata, G. (Gerardo), Matheny, P. B. (P. Brandon), Mathiassen, G. H. (Geir Harald), Matocec, N. (Neven), Mayrhofer, H. (Helmut), Mehrabi, M. (Mehdi), Melo, I. (Ireneia), Mesic, A. (Armin), Methven, A. S. (Andrew S.), Miettinen, O. (Otto), Romero, A. M. (Ana M. Millanes), Miller, A. N. (Andrew N.), Mitchell, J. K. (James K.), Moberg, R. (Roland), Moreau, P.-A. (Pierre-Arthur), Moreno, G. (Gabriel), Morozova, O. (Olga), Morte, A. (Asuncion), Muggia, L. (Lucia), Gonzalez, G. M. (Guillermo Munoz), Myllys, L. (Leena), Nagy, I. (Istvan), Nagy, L. G. (Laszlo G.), Neves, M. A. (Maria Alice), Niemela, T. (Tuomo), Nimis, P. L. (Pier Luigi), Niveiro, N. (Nicolas), Noordeloos, M. E. (Machiel E.), Nordin, A. (Anders), Noumeur, S. R. (Sara Raouia), Novozhilov, Y. (Yuri), Nuytinck, J. (Jorinde), Ohenoja, E. (Esteri), Fiuza, P. O. (Patricia Oliveira), Orange, A. (Alan), Ordynets, A. (Alexander), Ortiz-Santana, B. (Beatriz), Pacheco, L. (Leticia), Pal-Fam, F. (Ferenc), Palacio, M. (Melissa), Palice, Z. (Zdenek), Papp, V. (Viktor), Partel, K. (Kadri), Pawlowska, J. (Julia), Paz, A. (Aurelia), Peintner, U. (Ursula), Pennycook, S. (Shaun), Pereira, O. L. (Olinto Liparini), Daniels, P. P. (Pablo Perez), Capella, M. A. (Miguel A. Perez-De-Gregorio), del Amo, C. M. (Carlos Manuel Perez), Gorjon, S. P. (Sergio Perez), Perez-Ortega, S. (Sergio), Perez-Vargas, I. (Israel), Perry, B. A. (Brian A.), Petersen, J. H. (Jens H.), Petersen, R. H. (Ronald H.), Pfister, D. H. (Donald H.), Phukhamsakda, C. (Chayanard), Piatek, M. (Marcin), Piepenbring, M. (Meike), Pino-Bodas, R. (Raquel), Esquivel, J. P. (Juan Pablo Pinzon), Pirot, P. (Paul), Popov, E. S. (Eugene S.), Popoff, O. (Orlando), Alvaro, M. P. (Maria Prieto), Printzen, C. (Christian), Psurtseva, N. (Nadezhda), Purahong, W. (Witoon), Quijada, L. (Luis), Rambold, G. (Gerhard), Ramirez, N. A. (Natalia A.), Raja, H. (Huzefa), Raspe, O. (Olivier), Raymundo, T. (Tania), Reblova, M. (Martina), Rebriev, Y. A. (Yury A.), Garcia, J. d. (Juan de Dios Reyes), Ripoll, M. A. (Miguel Angel Ribes), Richard, F. (Franck), Richardson, M. J. (Mike J.), Rico, V. J. (Victor J.), Robledo, G. L. (Gerardo Lucio), Barbosa, F. R. (Flavia Rodrigues), Rodriguez-Caycedo, C. (Cristina), Rodriguez-Flakus, P. (Pamela), Ronikier, A. (Anna), Casas, L. R. (Luis Rubio), Rusevska, K. (Katerina), Saar, G. (Gunter), Saar, I. (Irja), Salcedo, I. (Isabel), Martinez, S. M. (Sergio M. Salcedo), Montoya, C. A. (Carlos A. Salvador), Sanchez-Ramirez, S. (Santiago), Sandoval-Sierra, J. V. (J. Vladimir), Santamaria, S. (Sergi), Monteiro, J. S. (Josiane Santana), Schroers, H. J. (Hans Josef), Schulz, B. (Barbara), Schmidt-Stohn, G. (Geert), Schumacher, T. (Trond), Senn-Irlet, B. (Beatrice), Sevcikova, H. (Hana), Shchepin, O. (Oleg), Shirouzu, T. (Takashi), Shiryaev, A. (Anton), Siepe, K. (Klaus), Sir, E. B. (Esteban B.), Sohrabi, M. (Mohammad), Soop, K. (Karl), Spirin, V. (Viacheslav), Spribille, T. (Toby), Stadler, M. (Marc), Stalpers, J. (Joost), Stenroos, S. (Soili), Suija, A. (Ave), Sunhede, S. (Stellan), Svantesson, S. (Sten), Svensson, S. (Sigvard), Svetasheva, T. Y. (Tatyana Yu), Swierkosz, K. (Krzysztof), Tamm, H. (Heidi), Taskin, H. (Hatira), Taudiere, A. (Adrien), Tedebrand, J.-O. (Jan-Olof), Lahoz, R. T. (Raul Tena), Temina, M. (Marina), Thell, A. (Arne), Thines, M. (Marco), Thor, G. (Goren), Thus, H. (Holger), Tibell, L. (Leif), Tibell, S. (Sanja), Timdal, E. (Einar), Tkalcec, Z. (Zdenko), Tonsberg, T. (Tor), Trichies, G. (Gerard), Triebel, D. (Dagmar), Tsurykau, A. (Andrei), Tulloss, R. E. (Rodham E.), Tuovinen, V. (Veera), Sosa, M. U. (Miguel Ulloa), Urcelay, C. (Carlos), Valade, F. (Francois), Garza, R. V. (Ricardo Valenzuela), van den Boom, P. (Pieter), Van Vooren, N. (Nicolas), Vasco-Palacios, A. M. (Aida M.), Vauras, J. (Jukka), Santos, J. M. (Juan Manuel Velasco), Vellinga, E. (Else), Verbeken, A. (Annemieke), Vetlesen, P. (Per), Vizzini, A. (Alfredo), Voglmayr, H. (Hermann), Volobuev, S. (Sergey), von Brackel, W. (Wolfgang), Voronina, E. (Elena), Walther, G. (Grit), Watling, R. (Roy), Weber, E. (Evi), Wedin, M. (Mats), Weholt, O. (Oyvind), Westberg, M. (Martin), Yurchenko, E. (Eugene), Zehnalek, P. (Petr), Zhang, H. (Huang), Zhurbenko, M. P. (Mikhail P.), and Ekmani, S. (Stefan)

Abstract

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN., Publisher’s Note A first version of this text was prepared by the first eight authors and the last one, given here. The other listed co-authors in the article PDF support the content, and their actual contributions varied from only support to additions that substantially improved the content. The full details of all co-authors, with their affiliations, are included in Supplementary Table 1 after p.175 of the article for reasons of clarity and space. Slavomír Adamčík Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Teuvo Ahti Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland M. Catherine Aime Purdue University, 915 W. State St., West Lafayette, Indiana 47907, U.S.A. A. Martyn Ainsworth Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom László Albert Hungarian Mycological Society, 1087 Könyves Kálmán krt. 40, Budapest, Hungary Edgardo Albertó Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, Universidad Nacional de San Martin-Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina Alberto Altés García Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Dmitry Ageev SIGNATEC Ltd., 630090, Novosibirsk, Akademgorodok (Novosibirsk Scientific Center), Inzhenernaya str., 22, Russia Reinhard Agerer Ludwig-Maximilians-Universität München, Menzinger Str. 67, 80638 München, Germany Begona Aguirre-Hudson Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom Joe Ammirati University of Washington, Seattle, Washington 98195-1800, U.S.A. Harry Andersson Eichhahnweg 29a, 38108 Braunschweig, Germany Claudio Angelini Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Apartado 21-9, Santo Domingo, Dominican Republic Vladimír Antonín Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Takayuki Aoki Genetic Reso

Published
2018

14. Progetto 'Licheni e beni culturali lapidei' del GdL per la Biologia: attività 'Adotta un monumento'

Author

Sergio Enrico Favero-Longo, Renato Benesperi, Stefano Bertuzzi, Eraldo Bocca, Stefania Caporale, Immacolata Catalano, Fabiana Cristofolini, Valerio Genovesi, Anna Guttova, Stefano Loppi, Stefano Martellos, Enrica Matteucci, Matteo Mazzoni, Mariagrazia Morando, Luca Paoli, Maurizio Perotti, Sonia Ravera, Ada Roccardi, Società Lichenologica Italiana, Enrico Favero-Longo, Sergio, Benesperi, Renato, Bertuzzi, Stefano, Bocca, Eraldo, Caporale, Stefania, Catalano, Immacolata, Cristofolini, Fabiana, Genovesi, Valerio, Guttova, Anna, Loppi, Stefano, Martellos, Stefano, Matteucci, Enrica, Mazzoni, Matteo, Morando, Mariagrazia, DE PAOLI, Luca, Perotti, Maurizio, Ravera, Sonia, and Roccardi, Ada

Subjects
colonizzazione, biodeterioramento, aree archeologiche, aree archeologiche, biodeterioramento, colonizzazione
Published
2014

17. Effects of NO2 and NH3 from road traffic on epiphytic lichens.

Author

Frati, L., Caprasecca, E., Santoni, S., Gaggi, C., Guttova, A., Gaudino, S., Pati, A., Rosamilia, S., Pirintsos, S.A., and Loppi, S.

Subjects
EPIPHYTIC lichens, EPIPHYTES, NITROGEN dioxide, ROADS
Abstract

Abstract: The results of a survey aimed at investigating whether NO2 and NH3 emitted by road traffic can influence lichen diversity, lichen vitality and the accumulation of nitrogen in lichen thalli are reported. For this purpose, distance from a highway in a rural environment of central Italy was regarded as the main parameter to check this hypothesis. The results of the present survey indicated that road traffic is not a relevant source of NH3. On the other hand, NO2 concentrations, although rather low, were negatively correlated with distance from the highway according to a typical logarithmic function. No association between NO2 concentrations and the diversity of epiphytic lichens was found, probably because of the low NO2 values measured. Also bark properties were not influenced by distance from the highway. Accumulation of nitrogen, reduction in the content of chlorophyll a, chlorophyll b and total carotenoids were found in transplanted thalli of Evernia prunastri, but NO2 was not responsible for these changes, which were probably caused by applications of N-based fertilizers. [Copyright &y& Elsevier]

Published
2006
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19. Does air pollution influence the success of species translocation? Trace elements, ultrastructure and photosynthetic performances in transplants of a threatened forest macrolichen

Author

Zuzana Fačkovcová, Luca Paoli, Andrea Vannini, Adriana Basile, Anna Guttová, Anna Lackovičová, Sara Landi, Luigi Sanità di Toppi, Sergio Sorbo, Stefano Loppi, Marco Landi, Sonia Ravera, Paoli L., Guttova A., Sorbo S., Lackovicova A., Ravera S., Landi S., Landi M., Basile A., Sanita di Toppi L., Vannini A., Loppi S., Fackovcova Z., Paoli, L., Guttova, A., Sorbo, S., Lackovicova, A., Ravera, S., Landi, S., Landi, M., Basile, A., Sanita di Toppi, L., Vannini, A., Loppi, S., and Fackovcova, Z.

Subjects
0106 biological sciences, In situ conservation, Beech forest, Chlorophyll fluorescence, Lobaria pulmonaria, Mediterranean oak forest, Western Carpathians, General Decision Sciences, Chromosomal translocation, 010501 environmental sciences, 010603 evolutionary biology, 01 natural sciences, Lichen, Beech, Ecology, Evolution, Behavior and Systematics, 0105 earth and related environmental sciences, Ecology, biology, Species translocation, biology.organism_classification, Thallus, Threatened species
Abstract

Species translocation can be considered as a primary conservation strategy with reference to in situ conservation. In the case of lichens, translocations often risk to fail due stress factors associated with unsuitable receptor sites. Considering the bioecological characteristics of lichens, air pollution is among the most limiting stress factors. In this study, the forest macrolichen Lobaria pulmonaria was used as a model to test the hypothesis that the translocation of sensitive lichens is effective only in unpolluted environments. At purpose, 500 fragments or whole thalli were translocated in selected beech forests of Central Europe (the Western Carpathians, Slovakia) where the species disappeared in the past and in oak forests of Southern Europe (Tuscany, Central Italy) where native populations are present. Prior to the translocation (May 2016) and after one year, morphological and ultrastructural features, trace elements as well as chlorophyll a fluorescence emission were analysed. Four years later, the effectiveness of lichen translocation was further evaluated as presence of the transplants and of newly formed individuals. After one year, the translocation ensured an effective survival of the thalli in remote oak and beech forests characterized by a negligible or low contamination by heavy metals. The transplants were considered successful and developed new lobules and rhizines, attaching by themselves to the bark of the host trees, looking overall healthy, without evident signs of alteration also at ultrastructural level. Moreover, in a few cases newly formed individuals were observed after four years. On the other hand, the results highlighted the link between the unsuccess of the translocation and air pollution in other areas of the Western Carpathians and suggested that current air quality still limits the possibility of recolonization in areas where the model species disappeared.

Published
2020

20. Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 7

Author

Michele Puntillo, Michele Aleffi, Giovanni Sicoli, G. Barberis, Renato Benesperi, Alfredo Vizzini, Elena Pittao, Davide Dagnino, Pier Luigi Nimis, Petra Mair, Juri Nascimbene, Luca Paoli, Filippo Prosser, Mauro Ottonello, Chiara Vallese, F. Sguazzin, Anna Guttová, Antonio B. De Giuseppe, Silvia Poponessi, Marta Puglisi, Wilhelm Tratter, Paolo Giordani, Gabriele Gheza, Nicodemo G. Passalacqua, Zuzana Fačkovcová, Cecilia Totti, Wolfgang von Brackel, Daniel Spitale, Domenico Puntillo, Claudia Turcato, Helmut Mayrhofer, Sonia Ravera, Ravera S., Puglisi M., Vizzini A., Totti C., Aleffi M., Barberis G., Benesperi R., Brackel W., Dagnino D., De Giuseppe A.B., Fackovcova Z., Gheza G., Giordani P., Guttova A., Mair P., Mayrhofer H., Nascimbene J., Nimis P.L., Paoli L., Passalacqua N.G., Pittao E., Poponessi S., Prosser F., Ottonello M., Puntillo D., Puntillo M., Sicoli G., Sguazzin F., Spitale D., Tratter W., Turcato C., Vallese C., Ravera, S., Puglisi, M., Vizzini, A., Totti, C., Aleffi, M., Barberis, G., Benesperi, R., Brackel, W., Dagnino, D., De Giuseppe, A. B., Fackovcova, Z., Gheza, G., Giordani, P., Guttova, A., Mair, P., Mayrhofer, H., Nascimbene, J., Nimis, P. L., Paoli, L., Passalacqua, N. G., Pittao, E., Poponessi, S., Prosser, F., Ottonello, M., Puntillo, D., Puntillo, M., Sicoli, G., Sguazzin, F., Spitale, D., Tratter, W., Turcato, C., and Vallese, C.

Subjects
0106 biological sciences, 0301 basic medicine, Flora, Charophyceae, Jungermanniidae, Ascomycota, Basidiomycota, Bryidae, Plant Science, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, Algae, lcsh:Botany, Botany, Lichen, Ascomycota, Basidiomycota, Bryidae, Charophyceae, Jungermanniidae, Ecology, Evolution, Behavior and Systematics, biology, Lichens, taxonomy, flora, 030108 mycology & parasitology, biology.organism_classification, lcsh:QK1-989
Abstract

In this contribution, new data concerning algae, bryophytes, fungi, and lichens of the Italian flora are presented. It includes new records and confirmations for the algae genusChara, the bryophyte generaCephalozia,Conardia,Conocephalum,Didymodon,Sphagnum,Tetraplodon, andTortula, the fungal generaEndophyllum,Gymnosporangium,Microbotryum,Phragmidium, andPluteus, and the lichen generaCandelariella,Cladonia,Flavoplaca,Lichenothelia,Peltigera,Placolecis,Rinodina,Scytinium, andSolenopsora.

Published
2019

21. Ecological specialization of lichen congeners with a strong link to Mediterranean-type climate: a case study of the genus Solenopsora in the Apennine Peninsula

Author

Anna Guttová, Elena Pittao, Zuzana Fačkovcová, Luca Paoli, Stefano Martellos, Silvana Munzi, Silvia Ongaro, Guttova, A., Fackovcova, Z., Martellos, S., Paoli, L., Munzi, S., Pittao, E., and Ongaro, S.

Subjects
symbiotic organisms, 0106 biological sciences, Ecological niche, Mediterranean climate, Ecology, Range (biology), ecological biogeography, Biodiversity, Niche differentiation, distribution modelling, 010603 evolutionary biology, 01 natural sciences, climate change, climate envelope, ensemble climatic modelling, Ecological speciation, climate change, climate envelope, distribution modelling, ecological biogeography, ensemble climatic modelling, symbiotic organisms, Taxon, Geography, Lichen, Ecology, Evolution, Behavior and Systematics, 010606 plant biology & botany
Abstract

An ecological biogeographical perspective provides an understanding of the factors that shape the geographical distribution of organisms, their biodiversity and ecological speciation. Focusing on members of the lichen genus Solenopsora, which are strongly linked to a Mediterranean-type climate, we aimed to depict their environmental niches in the Apennine Peninsula. This area represents their ecological optima, as well as the biogeographical centre of distribution. On the basis of occurrences of Solenopsora congeners, we identified the key ecological factors that shape their environmental niches. Applying an ensemble approach, which merges the results of Random Forest, GLM and MaxEnt algorithms, suitability maps were developed. These are mainly influenced by geological substratum, temperature and precipitation. Occurrence of Solenopsora taxa seems to be mainly governed by low variability in diurnal temperature and tolerance to dryness, with precipitation in the range of 0–20 mm in the driest month and a minimum temperature of >5 °C in the coldest month. The sensitivity to diurnal temperature, an important indicator for climate change, suggests that the taxa confined to Mediterranean bioclimatic types (i.e. Solenopsora grisea, S. marina, S. olivacea subsp. olbiensis and S. olivacea subsp. olivacea) might be good indicators of climatic stability. The geological substratum was a strong limiting factor and separated the taxa into three groups: those growing on calcareous, siliceous and ultramafic substrata. Limited co-occurrence of species confined to one of the three categories suggests that the level of niche differentiation is on a microhabitat level. Accounting for ecological requirements, the taxa differ in their tolerance to sub-optimal conditions. The ecological niches of a sister subspecies pair with different reproduction strategies, fertile S. olivacea subsp. olivacea and sorediate S. olivacea subsp. olbiensis, overlap strongly. However, habitat suitability for S. olivacea subsp. olbiensis is greater in areas with higher precipitation in the driest month, whereas S. olivacea subsp. olivacea is more restricted to warmer and drier areas. We also report new regional records for Italy and the first records of S. cesatii in Serbia and Ukraine, and of S. liparina in Serbia.

Published
2019
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22. Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 9

Author

P. L. Nimis, Nicodemo G. Passalacqua, Fabrizio Boccardo, M. Marziano, Zuzana Fačkovcová, Michele Aleffi, I. Catalano, Elena Pittao, R. Jon, C. Guarino, Luca Paoli, Chiara Vallese, Ilaria Bonini, Jiří Malíček, Anna Guttová, Giulio Pandeli, A. B. De Giuseppe, Sonia Ravera, M. Cabon, Gabriele Gheza, L. Di Nuzzo, Cosimo Matino, F. Sguazzin, Alfredo Vizzini, Domenico Puntillo, G. Aloise, Francesco Dovana, Giovanni Sicoli, Slavomír Adamčík, Silvia Poponessi, Stefano Gianfreda, Marta Puglisi, Ravera S., Vizzini A., Puglisi M., Adamcik S., Aleffi M., Aloise G., Boccardo F., Bonini I., Cabon M., Catalano I., De Giuseppe A.B., Di Nuzzo L., Dovana F., Fackovcova Z., Gheza G., Gianfreda S., Guarino C., Guttova A., Jon R., Malicek J., Marziano M., Matino C., Nimis P.L., Pandeli G., Paoli L., Passalacqua N.G., Pittao E., Poponessi S., Puntillo D., Sguazzin F., Sicoli G., Vallese C., Ravera, Sonia, Vizzini, Alfredo, Puglisi, Marta, Adamčík, Slavomir, Aleffi, Michele, Aloise, Gaetano, Boccardo, Fabrizio, Bonini, Ilaria, Caboň, Miroslav, Catalano, Immacolata, De Giuseppe, Antonio B., Di Nuzzo, Luca, Dovana, Francesco, Fačkovcová, Zuzana, Gheza, Gabriele, Gianfreda, Stefano, Guarino, Carmine, Guttová, Anna, Jon, Raffaello, Malíček, Jiří, Marziano, Mario, Matino, Cosimo, Nimis, Pier Luigi, Pandeli, Giulio, Paoli, Luca, Passalacqua, Nicodemo G., Pittao, Elena, Poponessi, Silvia, Puntillo, Domenico, Sguazzin, Francesco, Sicoli, Giovanni, and Vallese, Chiara

Subjects
0106 biological sciences, Flora, Jungermanniidae, Plant Science, 010603 evolutionary biology, 01 natural sciences, Bryidae, Ascomycota, Algae, lcsh:Botany, Botany, Lichen, Ecology, Evolution, Behavior and Systematics, biology, Basidiomycota, biology.organism_classification, lcsh:QK1-989, Geography, Marchantiidae, Ascomycota Basidiomycota Bryidae Jungermanniidae Marchantiidae, 010606 plant biology & botany
Abstract

In this contribution, new data concerning bryophytes, fungi, and lichens of the Italian flora are presented. It includes new records and confirmations for the bryophyte genera Encalypta, Grimmia, and Riccia, for the fungal genera Hericium, Inocybe, Inocutis, Pluteus, and Russula, and for the lichen genera Bryoria, Farnoldia, Hypocenomyce, Lecania, Paracollema, Peltigera, Sarcogyne, and Teloschistes.

Published
2020

23. Impact of forest management on threatened epiphytic macrolichens: Evidence from a Mediterranean mixed oak forest (Italy)

Author

Luca Paoli, Anna Lackovičová, Sara Landi, Zuzana Fačkovcová, Stefano Loppi, Renato Benesperi, B. Anselmi, Sonia Ravera, L. Di Nuzzo, Andrea Vannini, Elisabetta Bianchi, Juri Nascimbene, Anna Guttová, Marco Marchetti, Marco Landi, Paoli L., Benesperi R., Fackovcova Z., Nascimbene J., Ravera S., Marchetti M., Anselmi B., Landi M., Landi S., Bianchi E., Di Nuzzo L., Lackovicova A., Vannini A., Loppi S., and Guttova A.

Subjects
0106 biological sciences, Forest management, Lobaria pulmonaria, 01 natural sciences, Forest ecology, Lichens, Flag Species, Legal Protection, Lobaria pulmonaria, Red Lists, Biomass Loss, lcsh:Forestry, Lichen, Red lists, Nature and Landscape Conservation, Flag specie, Ecology, biology, Biomass lo, Logging, Forestry, 04 agricultural and veterinary sciences, biology.organism_classification, Biomass loss, Chlorophyll fluorescence, Flag species, Legal protection, Ecological indicator, Geography, Habitat, Flag Species, Threatened species, 040103 agronomy & agriculture, 0401 agriculture, forestry, and fisheries, lcsh:SD1-669.5, 010606 plant biology & botany
Abstract

Forest management practices may heavily affect epiphytic cryptogams. This study was conceived in March 2016, as soon as we were informed about an authorized logging for timber within a Mediterranean mixed oak forest in Tuscany (central Italy), which threatened a large population of the forest macrolichen Lobaria pulmonaria (L.) Hoffm., composed of hundreds of fertile thalli. Lobaria pulmonaria is often used as an ecological indicator of high quality habitats hosting rare lichens, and in general, cryptogams worthy of conservation. The species has suffered a general decline throughout Europe as a consequence of air pollution and intensive forest management, and currently it is red-listed in several countries, where it is considered also as a “flag species”. We estimated that 40% of the lichen biomass (8.5-12.3 kg ha-1) has been lost due to logging operations (in the core area, up to 1.8 kg every 100 m2), in particular large and fertile thalli. One year after the conclusion of logging operations, the analysis of chlorophyll fluorescence emission (indicator of the photosynthetic performance of the lichen photobionts), revealed a significant reduction of the vitality of the thalli on retained-isolated trees. The article provides issues for conservation in Mediterranean oak forests and outlines the outmost importance of ensuring the safeguard of forest ecosystems hosting fertile populations of this model species, especially in the case of unprotected forests.

Published
2019

24. Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 6

Author

Filippo Prosser, Wilhelm Tratter, Luca Paoli, Gabriele Gheza, Giulio Pandeli, Michele Puntillo, L. Miserere, Ilaria Bonini, Petra Mair, Zuzana Fačkovcová, Alfredo Vizzini, Daniel Spitale, Franco Cheli, Domenico Puntillo, Anna Guttová, Alberto Selvaggi, Helmut Mayrhofer, Sonia Ravera, Annalena Cogoni, Ravera S., Cogoni A., Vizzini A., Bonini I., Cheli F., Fackovcova Z., Gheza G., Guttova A., Mair P., Mayrhofer H., Miserere L., Pandeli G., Paoli L., Prosser F., Puntillo D., Puntillo M., Selvaggi A., Spitale D., and Tratter W.

Subjects
0106 biological sciences, Flora, Jungermanniidae, Plant Science, 010603 evolutionary biology, 01 natural sciences, Bryidae, floristic data, Algae, Ascomycota, lcsh:Botany, Botany, Lichen, Ecology, Evolution, Behavior and Systematics, biology, Basidiomycota, biology.organism_classification, lcsh:QK1-989, Ascomycota, Basidiomycota, Bryidae, Jungermanniidae, Marchantiidae, floristic data, Geography, Marchantiidae, Floristic data, 010606 plant biology & botany
Abstract

In this contribution, new data concerning bryophytes, fungi, and lichens of the Italian flora are presented. It includes new records and confirmations for the bryophyte genera Barbula, Fissidens, Gymnostomum, Jungermannia, Riccia, and Scapania, the fungal genera Hyalopsora and Urocystis and the lichen genera Arthothelium, Chaenotheca, Lepraria, Lobaria, Miriquidica, Parmelia, Rinodina, Solenopsora, Thelopsis and Xanthoparmelia.

Published
2018

25. Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 4

Author

Giovanni Bergamo Decarli, Alessia Tatti, Michele Aleffi, Silvia Poponnessi, Annalena Cogoni, Gabriele Gheza, F. Sguazzin, Helmut Mayrhofer, Diego Rigotti, Davide Puddu, Sonia Ravera, Juri Nascimbene, Silvia Paola Assini, Luca Paoli, Filippo Prosser, Anna Guttová, Ilaria Bonini, Wolfgang von Brackel, Francesco Cheli, Domenico Puntillo, Alfredo Vizzini, Zuzana Fačkovcová, Giovanna Potenza, Lyubov Gavrylenko, V. V. Darmostuk, Roberto Venanzoni, Ravera S., Vizzini A., Cogoni A., Aleffi M., Assini S., Decarli G.B., Bonini I., von Brackel W., Cheli F., Darmostuk V., Fackovcova Z., Gavrylenko L., Gheza G., Guttova A., Mayrhofer H., Nascimbene J., Paoli L., Poponessi S., Potenza G., Prosser F., Puddu D., Puntillo D., Rigotti D., Sguazzin F., Tatti A., and Venanzoni R.

Subjects
0106 biological sciences, 0301 basic medicine, Flora, Ascomycota, Basidiomycota, Bryidae, Marchantiidae, floristic data, Plant Science, 01 natural sciences, Bryidae, 03 medical and health sciences, floristic data, Algae, Ascomycota, lcsh:Botany, Botany, Lichen, Ecology, Evolution, Behavior and Systematics, biology, Basidiomycota, 030108 mycology & parasitology, biology.organism_classification, lcsh:QK1-989, Geography, Marchantiidae, 010606 plant biology & botany
Abstract

In this contribution, new data concerning bryophytes, fungi and lichens of the Italian flora are presented. It includes new records and confirmations for the bryophyte generaCampylopus,Paludella,Tortula, andConocephalum, the fungal generaAgonimia,Buelliella,Entorrhiza,Filicupula,Poronia, andSporisorium, the lichen generaCladonia,Dibaeis,Lasallia, andRhizocarpon.

Published
2017

Catalog

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