26 results on '"Höner Zu Bentrup K"'
Search Results
2. A549 Lung Epithelial Cells Grown as Three-Dimensional Aggregates: Alternative Tissue Culture Model for Pseudomonas aeruginosa Pathogenesis
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Carterson, A. J., primary, Höner zu Bentrup, K., additional, Ott, C. M., additional, Clarke, M. S., additional, Pierson, D. L., additional, Vanderburg, C. R., additional, Buchanan, K. L., additional, Nickerson, C. A., additional, and Schurr, M. J., additional
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- 2005
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3. An Na+-pumping V1V0-ATPase complex in the thermophilic bacterium Clostridium fervidus
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Höner zu Bentrup, K, primary, Ubbink-Kok, T, additional, Lolkema, J S, additional, and Konings, W N, additional
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- 1997
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4. Large scale purification, nucleotide binding properties, and ATPase activity of the MalK subunit of Salmonella typhimurium maltose transport complex.
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Walter, C, primary, Höner zu Bentrup, K, additional, and Schneider, E, additional
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- 1992
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5. Burkholderia thailandensis outer membrane vesicles exert antimicrobial activity against drug-resistant and competitor microbial species.
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Wang Y, Hoffmann JP, Chou CW, Höner Zu Bentrup K, Fuselier JA, Bitoun JP, Wimley WC, and Morici LA
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- Anti-Bacterial Agents pharmacology, Bacterial Outer Membrane metabolism, Biofilms growth & development, Glycolipids metabolism, Methicillin-Resistant Staphylococcus aureus drug effects, Microbial Sensitivity Tests, N-Acetylmuramoyl-L-alanine Amidase metabolism, Quinolines metabolism, Anti-Bacterial Agents metabolism, Antibiosis physiology, Burkholderia metabolism, Extracellular Vesicles metabolism, Methicillin-Resistant Staphylococcus aureus growth & development
- Abstract
Gram-negative bacteria secrete outer membrane vesicles (OMVs) that play critical roles in intraspecies, interspecies, and bacteria-environment interactions. Some OMVs, such as those produced by Pseudomonas aeruginosa, have previously been shown to possess antimicrobial activity against competitor species. In the current study, we demonstrate that OMVs from Burkholderia thailandensis inhibit the growth of drug-sensitive and drug-resistant bacteria and fungi. We show that a number of antimicrobial compounds, including peptidoglycan hydrolases, 4-hydroxy-3-methyl-2-(2-non-enyl)-quinoline (HMNQ) and long-chain rhamnolipid are present in or tightly associate with B. thailandensis OMVs. Furthermore, we demonstrate that HMNQ and rhamnolipid possess antimicrobial and antibiofilm properties against methicillin-resistant Staphylococcus aureus (MRSA). These findings indicate that B. thailandensis secretes antimicrobial OMVs that may impart a survival advantage by eliminating competition. In addition, bacterial OMVs may represent an untapped resource of novel therapeutics effective against bio-film-forming and multidrug-resistant organisms.
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- 2020
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6. Do Voluntary Lab-Based Active Learning Sessions Impact Medical Student Knowledge Retention?
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Lawson LB, Lind CM, Gibson JW, and Höner Zu Bentrup K
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Background: Despite recent evidence demonstrating the benefits of case-based and active learning strategies in medical education, many medical schools have reduced or entirely eliminated teaching laboratories in medical microbiology courses. The objective of our investigation was to analyze the impact of a voluntary hands-on microbiology laboratory session on students' knowledge retention and ability to apply the underlying principles to exam questions in our Introduction to Infectious Diseases (IID) course., Methods: We compared the performance of students participating in the wet labs with those who did not, analyzing scores on exam questions directly related to the concepts presented in the laboratory session and their overall scores on the IID module exam. The voluntary nature of our microbiology lab session provided a unique opportunity to assess its impact on knowledge retention independent of other factors, such as lecture and exam content, etc. Data were collected for 7 academic years and analyzed in aggregate., Results: Students who attended voluntary lab sessions scored higher on exam questions related to lab exercises than students who did not attend (Mann-Whitney, p = 0.0074). These results support the benefit of reexamining material originally presented during classroom sessions in an active, collaborative learning environment. Course evaluation responses indicted that students valued the opportunity to visually reinforce concepts they had previously read in a textbook or heard in lectures., Conclusions: At a time when many medical schools are reducing or eliminating hands-on lab sessions in microbiology and other basic sciences, our results highlight the benefits of this teaching strategy. The laboratory session provided an opportunity for students to revisit concepts initially presented in the traditional classroom setting and to actively engage in applying these concepts to case-based scenarios. The improved educational outcomes will benefit students in future standardized exams as well as in their professional practice., Competing Interests: Competing InterestsThe authors declare that they have no competing interests., (© International Association of Medical Science Educators 2020.)
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- 2020
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7. Global transcript structure resolution of high gene density genomes through multi-platform data integration.
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O'Grady T, Wang X, Höner Zu Bentrup K, Baddoo M, Concha M, and Flemington EK
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- Alternative Splicing genetics, Cell Line, DNA, Intergenic genetics, Exons genetics, Humans, Molecular Sequence Annotation, Polyadenylation genetics, Promoter Regions, Genetic, RNA, Messenger metabolism, Repetitive Sequences, Nucleic Acid genetics, Reproducibility of Results, Sequence Analysis, RNA, Transcription Initiation Site, Transcription, Genetic, Transcriptome genetics, Genome, Viral, Herpesvirus 4, Human genetics, RNA, Messenger genetics, Statistics as Topic
- Abstract
Annotation of herpesvirus genomes has traditionally been undertaken through the detection of open reading frames and other genomic motifs, supplemented with sequencing of individual cDNAs. Second generation sequencing and high-density microarray studies have revealed vastly greater herpesvirus transcriptome complexity than is captured by existing annotation. The pervasive nature of overlapping transcription throughout herpesvirus genomes, however, poses substantial problems in resolving transcript structures using these methods alone. We present an approach that combines the unique attributes of Pacific Biosciences Iso-Seq long-read, Illumina short-read and deepCAGE (Cap Analysis of Gene Expression) sequencing to globally resolve polyadenylated isoform structures in replicating Epstein-Barr virus (EBV). Our method, Transcriptome Resolution through Integration of Multi-platform Data (TRIMD), identifies nearly 300 novel EBV transcripts, quadrupling the size of the annotated viral transcriptome. These findings illustrate an array of mechanisms through which EBV achieves functional diversity in its relatively small, compact genome including programmed alternative splicing (e.g. across the IR1 repeats), alternative promoter usage by LMP2 and other latency-associated transcripts, intergenic splicing at the BZLF2 locus, and antisense transcription and pervasive readthrough transcription throughout the genome., (© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.)
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- 2016
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8. Prospective dual role of mesenchymal stem cells in breast tumor microenvironment.
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Senst C, Nazari-Shafti T, Kruger S, Höner Zu Bentrup K, Dupin CL, Chaffin AE, Srivastav SK, Wörner PM, Abdel-Mageed AB, Alt EU, and Izadpanah R
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- Adipose Tissue pathology, Animals, Chemokine CXCL1 metabolism, Chemokine CXCL1 physiology, Chemotaxis, Culture Media, Conditioned, Female, Gene Expression Regulation, Neoplastic, Humans, Interleukin-8 metabolism, Interleukin-8 physiology, MCF-7 Cells, Mice, MicroRNAs genetics, MicroRNAs metabolism, Neoplasm Transplantation, Transcriptome, Breast Neoplasms pathology, Mesenchymal Stem Cells physiology, Tumor Microenvironment
- Abstract
Breast cancer tissue is a heterogeneous cellular milieu comprising cancer and host cells. The interaction between breast malignant and non-malignant cells takes place in breast tumor microenvironment (TM), and has a crucial role in breast cancer progression. In addition to cellular component of TM, it mainly consists of cytokines released by tumor cells. The tumor-tropic capacity of mesenchymal stem cells (MSCs) and their interaction with breast TM is an active area of investigation. In the present communication, the interplay between the breast resident adipose tissue-derived MSCs (B-ASCs) and breast TM was studied. It was found that a distinct subset of B-ASCs display a strong affinity for conditioned media (CM) from two breast cancer cell lines, MDA-MB 231 (MDA-CM) and MCF-7 (MCF-CM). The expressions of several cytokines including angiogenin, GM-CSF, IL-6, GRO-α and IL-8 in MDA-CM and MCF-CM have been identified. Upon functional analysis a crucial role for GRO-α and IL-8 in B-ASCs migration was detected. The B-ASC migration was found to be via negative regulation of RECK and enhanced expression of MMPs. Furthermore, transcriptome analysis showed that migratory subpopulation express both pro- and anti-tumorigenic genes and microRNAs (miRNA). Importantly, we observed that the migratory cells exhibit similar gene and miRNA attributes as those seen in B-ASCs of breast cancer patients. These findings are novel and suggest that in breast cancer, B-ASCs migrate to the proximity of tumor foci. Characterization of the molecular mechanisms involved in the interplay between B-ASCs and breast TM will help in understanding the probable role of B-ASCs in breast cancer development, and could pave way for anticancer therapies.
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- 2013
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9. Rotating cell culture systems for human cell culture: human trophoblast cells as a model.
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Zwezdaryk KJ, Warner JA, Machado HL, Morris CA, and Höner zu Bentrup K
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- Cell Culture Techniques methods, Cell Line, Humans, Trophoblasts ultrastructure, Cell Culture Techniques instrumentation, Trophoblasts cytology
- Abstract
The field of human trophoblast research aids in understanding the complex environment established during placentation. Due to the nature of these studies, human in vivo experimentation is impossible. A combination of primary cultures, explant cultures and trophoblast cell lines support our understanding of invasion of the uterine wall and remodeling of uterine spiral arteries by extravillous trophoblast cells (EVTs), which is required for successful establishment of pregnancy. Despite the wealth of knowledge gleaned from such models, it is accepted that in vitro cell culture models using EVT-like cell lines display altered cellular properties when compared to their in vivo counterparts. Cells cultured in the rotating cell culture system (RCCS) display morphological, phenotypic, and functional properties of EVT-like cell lines that more closely mimic differentiating in utero EVTs, with increased expression of genes mediating invasion (e.g. matrix metalloproteinases (MMPs)) and trophoblast differentiation. The Saint Georges Hospital Placental cell Line-4 (SGHPL-4) (kindly donated by Dr. Guy Whitley and Dr. Judith Cartwright) is an EVT-like cell line that was used for testing in the RCCS. The design of the RCCS culture vessel is based on the principle that organs and tissues function in a three-dimensional (3-D) environment. Due to the dynamic culture conditions in the vessel, including conditions of physiologically relevant shear, cells grown in three dimensions form aggregates based on natural cellular affinities and differentiate into organotypic tissue-like assemblies. The maintenance of a fluid orbit provides a low-shear, low-turbulence environment similar to conditions found in vivo. Sedimentation of the cultured cells is countered by adjusting the rotation speed of the RCCS to ensure a constant free-fall of cells. Gas exchange occurs through a permeable hydrophobic membrane located on the back of the bioreactor. Like their parental tissue in vivo, RCCS-grown cells are able to respond to chemical and molecular gradients in three dimensions (i.e. at their apical, basal, and lateral surfaces) because they are cultured on the surface of porous microcarrier beads. When grown as two-dimensional monolayers on impermeable surfaces like plastic, cells are deprived of this important communication at their basal surface. Consequently, the spatial constraints imposed by the environment profoundly affect how cells sense and decode signals from the surrounding microenvironment, thus implying an important role for the 3-D milieu. We have used the RCCS to engineer biologically meaningful 3-D models of various human epithelial tissues. Indeed, many previous reports have demonstrated that cells cultured in the RCCS can assume physiologically relevant phenotypes that have not been possible with other models. In summary, culture in the RCCS represents an easy, reproducible, high-throughput platform that provides large numbers of differentiated cells that are amenable to a variety of experimental manipulations. In the following protocol, using EVTs as an example, we clearly describe the steps required to three-dimensionally culture adherent cells in the RCCS.
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- 2012
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10. Tumor necrosis factor receptor 1 functions as a tumor suppressor.
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Chang F, Lacey MR, Bouljihad M, Höner Zu Bentrup K, and Fortgang IS
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- Animals, Cell Proliferation, Colitis pathology, Colon pathology, Colonic Neoplasms pathology, Inflammation metabolism, Inflammation pathology, Mice, Mice, Knockout, Receptors, Tumor Necrosis Factor, Type I genetics, Signal Transduction physiology, Tumor Necrosis Factor-alpha genetics, Tumor Suppressor Proteins genetics, beta Catenin metabolism, Colitis metabolism, Colon metabolism, Colonic Neoplasms metabolism, Receptors, Tumor Necrosis Factor, Type I physiology, Tumor Necrosis Factor-alpha physiology, Tumor Suppressor Proteins physiology
- Abstract
Tumor necrosis factor (TNF) is a key player in inflammatory bowel disease and has been variably associated with carcinogenesis, but details of the cross talk between inflammatory and tumorigenic pathways remain incompletely understood. It has been shown that, in C57BL/6 mice, signaling via TNF receptor 1 (TNFR1) is protective from injury and inflammation in experimental colitis. Therefore, we hypothesized that loss of TNFR1 signaling would confer increased risk of developing colitis-associated carcinoma. Using three models of murine tumorigenesis based on repeated bouts of inflammation or systemic tumor initiator, we sought to determine the roles of TNF and TNFR1 with regard to neoplastic transformation in the colon in wild-type (WT), TNFR1 knockout (R1KO), and TNF knockout (TNFKO) mice. We found R1KO animals to have more severe disease, as defined by weight loss, hematochezia, and histology. TNFKO mice demonstrated less weight loss but were consistently smaller, and rates and duration of hematochezia were comparable to WT mice. Histological inflammation scores were higher and neoplastic lesions occurred more frequently and earlier in R1KO mice. Apoptosis is not affected in R1KO mice although epithelial proliferation following injury is more ardent even before tumorigenesis is apparent. Lastly, there is earlier and more intense expression of activated β-catenin in these mice, implying a connection between TNFR1 and Wnt signaling. Taken together, these findings show that in the context of colitis-associated carcinogenesis TNFR1 functions as a tumor suppressor, exerting this effect not via apoptosis but by modulating activation of β-catenin and controlling epithelial proliferation.
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- 2012
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11. Immunospecific responses to bacterial elongation factor Tu during Burkholderia infection and immunization.
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Nieves W, Heang J, Asakrah S, Höner zu Bentrup K, Roy CJ, and Morici LA
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- Animals, Antigens, Bacterial chemistry, Burkholderia Infections metabolism, Cloning, Molecular, Electrophoresis, Gel, Two-Dimensional methods, Female, Immune System, Melioidosis microbiology, Mice, Mice, Inbred BALB C, Proteomics methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Stem Cells metabolism, Burkholderia Infections microbiology, Burkholderia pseudomallei metabolism, Peptide Elongation Factor Tu metabolism
- Abstract
Burkholderia pseudomallei is the etiological agent of melioidosis, a disease endemic in parts of Southeast Asia and Northern Australia. Currently there is no licensed vaccine against infection with this biological threat agent. In this study, we employed an immunoproteomic approach and identified bacterial Elongation factor-Tu (EF-Tu) as a potential vaccine antigen. EF-Tu is membrane-associated, secreted in outer membrane vesicles (OMVs), and immunogenic during Burkholderia infection in the murine model of melioidosis. Active immunization with EF-Tu induced antigen-specific antibody and cell-mediated immune responses in mice. Mucosal immunization with EF-Tu also reduced lung bacterial loads in mice challenged with aerosolized B. thailandensis. Our data support the utility of EF-Tu as a novel vaccine immunogen against bacterial infection.
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- 2010
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12. Closing the phenotypic gap between transformed neuronal cell lines in culture and untransformed neurons.
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Myers TA, Nickerson CA, Kaushal D, Ott CM, Höner zu Bentrup K, Ramamurthy R, Nelman-Gonzalez M, Pierson DL, and Philipp MT
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- Animals, Apoptosis genetics, Apoptosis Regulatory Proteins genetics, Cell Culture Techniques methods, Cell Cycle Proteins genetics, Cell Differentiation physiology, Cell Division physiology, Cell Line, Transformed, Cell Proliferation, Cell Shape physiology, ELAV Proteins genetics, ELAV-Like Protein 4, Gene Expression Profiling, Genes, cdc physiology, Humans, Intracellular Signaling Peptides and Proteins, Oligonucleotide Array Sequence Analysis, Organ Culture Techniques methods, PC12 Cells, Phenotype, Proto-Oncogene Mas, Proto-Oncogene Proteins c-myc genetics, RNA, Messenger analysis, RNA, Messenger genetics, Rats, Neurons cytology, Neurons metabolism
- Abstract
Studies of neuronal dysfunction in the central nervous system (CNS) are frequently limited by the failure of primary neurons to propagate in vitro. Neuronal cell lines can be substituted for primary cells but they often misrepresent normal conditions. We hypothesized that a three-dimensional (3D) cell culture system would drive the phenotype of transformed neurons closer to that of untransformed cells, as has been demonstrated in non-neuronal cell lines. In our studies comparing 3D versus two-dimensional (2D) culture, neuronal SH-SY5Y (SY) cells underwent distinct morphological changes combined with a significant drop in their rate of cell division. Expression of the proto-oncogene N-myc and the RNA-binding protein HuD was decreased in 3D culture as compared to standard 2D conditions. We observed a decline in the anti-apoptotic protein Bcl-2 in 3D culture, coupled with increased expression of the pro-apoptotic proteins Bax and Bak. Moreover, thapsigargin (TG)-induced apoptosis was enhanced in the 3D cells. Microarray analysis demonstrated significantly differing mRNA levels for over 700 genes in the cells of the two culture types, and indicated that alterations in the G1/S cell-cycle progression contributed to the diminished doubling rate in the 3D-cultured SY cells. These results demonstrate that a 3D culture approach narrows the phenotypic gap between neuronal cell lines and primary neurons. The resulting cells may readily be used for in vitro research of neuronal pathogenesis.
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- 2008
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13. Ovarian cancers overexpress the antimicrobial protein hCAP-18 and its derivative LL-37 increases ovarian cancer cell proliferation and invasion.
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Coffelt SB, Waterman RS, Florez L, Höner zu Bentrup K, Zwezdaryk KJ, Tomchuck SL, LaMarca HL, Danka ES, Morris CA, and Scandurro AB
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- Blotting, Western, Cell Line, Tumor, Cell Movement, Cell Proliferation, Disease Progression, Enzyme-Linked Immunosorbent Assay, Female, Humans, Immunohistochemistry, Reverse Transcriptase Polymerase Chain Reaction, Tissue Array Analysis, Up-Regulation, Cathelicidins, Antimicrobial Cationic Peptides biosynthesis, Neoplasm Invasiveness, Ovarian Neoplasms metabolism, Ovarian Neoplasms pathology
- Abstract
The role of the pro-inflammatory peptide, LL-37, and its pro-form, human cationic antimicrobial protein 18 (hCAP-18), in cancer development and progression is poorly understood. In damaged and inflamed tissue, LL-37 functions as a chemoattractant, mitogen and pro-angiogenic factor suggesting that the peptide may potentiate tumor progression. The aim of this study was to characterize the distribution of hCAP-18/LL-37 in normal and cancerous ovarian tissue and to examine the effects of LL-37 on ovarian cancer cells. Expression of hCAP-18/LL-37 was localized to immune and granulosa cells of normal ovarian tissue. By contrast, ovarian tumors displayed significantly higher levels of hCAP-18/LL-37 where expression was observed in tumor and stromal cells. Protein expression was statistically compared to the degree of immune cell infiltration and microvessel density in epithelial-derived ovarian tumors and a significant correlation was observed for both. It was demonstrated that ovarian tumor tissue lysates and ovarian cancer cell lines express hCAP-18/LL-37. Treatment of ovarian cancer cell lines with recombinant LL-37 stimulated proliferation, chemotaxis, invasion and matrix metalloproteinase expression. These data demonstrate for the first time that hCAP-18/LL-37 is significantly overexpressed in ovarian tumors and suggest LL-37 may contribute to ovarian tumorigenesis through direct stimulation of tumor cells, initiation of angiogenesis and recruitment of immune cells. These data provide further evidence of the existing relationship between pro-inflammatory molecules and ovarian cancer progression., ((c) 2007 Wiley-Liss, Inc.)
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- 2008
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14. Media ion composition controls regulatory and virulence response of Salmonella in spaceflight.
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Wilson JW, Ott CM, Quick L, Davis R, Höner zu Bentrup K, Crabbé A, Richter E, Sarker S, Barrila J, Porwollik S, Cheng P, McClelland M, Tsaprailis G, Radabaugh T, Hunt A, Shah M, Nelman-Gonzalez M, Hing S, Parra M, Dumars P, Norwood K, Bober R, Devich J, Ruggles A, CdeBaca A, Narayan S, Benjamin J, Goulart C, Rupert M, Catella L, Schurr MJ, Buchanan K, Morici L, McCracken J, Porter MD, Pierson DL, Smith SM, Mergeay M, Leys N, Stefanyshyn-Piper HM, Gorie D, and Nickerson CA
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- Animals, Genes, Bacterial, Ions, Lethal Dose 50, Mice, Phosphates metabolism, Proteomics, Reverse Transcriptase Polymerase Chain Reaction, Salmonella growth & development, Transcription, Genetic, Culture Media chemistry, Gene Expression Regulation, Bacterial, Salmonella genetics, Salmonella pathogenicity, Space Flight
- Abstract
The spaceflight environment is relevant to conditions encountered by pathogens during the course of infection and induces novel changes in microbial pathogenesis not observed using conventional methods. It is unclear how microbial cells sense spaceflight-associated changes to their growth environment and orchestrate corresponding changes in molecular and physiological phenotypes relevant to the infection process. Here we report that spaceflight-induced increases in Salmonella virulence are regulated by media ion composition, and that phosphate ion is sufficient to alter related pathogenesis responses in a spaceflight analogue model. Using whole genome microarray and proteomic analyses from two independent Space Shuttle missions, we identified evolutionarily conserved molecular pathways in Salmonella that respond to spaceflight under all media compositions tested. Identification of conserved regulatory paradigms opens new avenues to control microbial responses during the infection process and holds promise to provide an improved understanding of human health and disease on Earth.
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- 2008
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15. Pseudomonas aeruginosa AlgR represses the Rhl quorum-sensing system in a biofilm-specific manner.
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Morici LA, Carterson AJ, Wagner VE, Frisk A, Schurr JR, Höner zu Bentrup K, Hassett DJ, Iglewski BH, Sauer K, and Schurr MJ
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- Bacterial Proteins antagonists & inhibitors, Bacterial Proteins metabolism, Base Sequence, Biofilms, Genotype, Hexosyltransferases antagonists & inhibitors, Plasmids, Pseudomonas aeruginosa pathogenicity, Virulence, Bacterial Proteins physiology, Hexosyltransferases metabolism, Pseudomonas aeruginosa genetics, Quorum Sensing genetics, Trans-Activators physiology
- Abstract
AlgR controls numerous virulence factors in Pseudomonas aeruginosa, including alginate, hydrogen cyanide production, and type IV pilus-mediated twitching motility. In this study, the role of AlgR in biofilms was examined in continuous-flow and static biofilm assays. Strain PSL317 (DeltaalgR) produced one-third the biofilm biomass of wild-type strain PAO1. Complementation with algR, but not fimTU-pilVWXY1Y2E, restored PSL317 to the wild-type biofilm phenotype. Comparisons of the transcriptional profiles of biofilm-grown PAO1 and PSL317 revealed that a number of quorum-sensing genes were upregulated in the algR deletion strain. Measurement of rhlA::lacZ and rhlI::lacZ promoter fusions confirmed the transcriptional profiling data when PSL317 was grown as a biofilm, but not planktonically. Increased amounts of rhamnolipids and N-butyryl homoserine lactone were detected in the biofilm effluent but not the planktonic supernatants of the algR mutant. Additionally, AlgR specifically bound to the rhlA and rhlI promoters in mobility shift assays. Moreover, PAO1 containing a chromosomal mutated AlgR binding site in its rhlI promoter formed biofilms and produced increased amounts of rhamnolipids similarly to the algR deletion strain. These observations indicate that AlgR specifically represses the Rhl quorum-sensing system during biofilm growth and that such repression is necessary for normal biofilm development. These data also suggest that AlgR may control transcription in a contact-dependent or biofilm-specific manner.
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- 2007
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16. Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.
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Wilson JW, Ott CM, Höner zu Bentrup K, Ramamurthy R, Quick L, Porwollik S, Cheng P, McClelland M, Tsaprailis G, Radabaugh T, Hunt A, Fernandez D, Richter E, Shah M, Kilcoyne M, Joshi L, Nelman-Gonzalez M, Hing S, Parra M, Dumars P, Norwood K, Bober R, Devich J, Ruggles A, Goulart C, Rupert M, Stodieck L, Stafford P, Catella L, Schurr MJ, Buchanan K, Morici L, McCracken J, Allen P, Baker-Coleman C, Hammond T, Vogel J, Nelson R, Pierson DL, Stefanyshyn-Piper HM, and Nickerson CA
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- Animals, Biofilms growth & development, Female, Gene Expression, Genes, Bacterial, Host Factor 1 Protein physiology, Iron metabolism, Mice, Mice, Inbred BALB C, Oligonucleotide Array Sequence Analysis, Proteomics, Regulon, Salmonella Infections, Animal etiology, Salmonella typhimurium physiology, Virulence, Weightlessness Simulation, Salmonella typhimurium genetics, Salmonella typhimurium pathogenicity, Space Flight
- Abstract
A comprehensive analysis of both the molecular genetic and phenotypic responses of any organism to the space flight environment has never been accomplished because of significant technological and logistical hurdles. Moreover, the effects of space flight on microbial pathogenicity and associated infectious disease risks have not been studied. The bacterial pathogen Salmonella typhimurium was grown aboard Space Shuttle mission STS-115 and compared with identical ground control cultures. Global microarray and proteomic analyses revealed that 167 transcripts and 73 proteins changed expression with the conserved RNA-binding protein Hfq identified as a likely global regulator involved in the response to this environment. Hfq involvement was confirmed with a ground-based microgravity culture model. Space flight samples exhibited enhanced virulence in a murine infection model and extracellular matrix accumulation consistent with a biofilm. Strategies to target Hfq and related regulators could potentially decrease infectious disease risks during space flight missions and provide novel therapeutic options on Earth.
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- 2007
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17. In vitro cell culture infectivity assay for human noroviruses.
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Straub TM, Höner zu Bentrup K, Orosz-Coghlan P, Dohnalkova A, Mayer BK, Bartholomew RA, Valdez CO, Bruckner-Lea CJ, Gerba CP, Abbaszadegan M, and Nickerson CA
- Subjects
- Cell Line, Collagen Type I, Cytopathogenic Effect, Viral, Humans, Intestinal Mucosa, Microspheres, Norovirus genetics, RNA, Viral genetics, Caliciviridae Infections virology, Cell Culture Techniques methods, Norovirus growth & development
- Abstract
Human noroviruses cause severe, self-limiting gastroenteritis that typically lasts 24-48 hours. Because of the lack of suitable tissue culture or animal models, the true nature of norovirus pathogenesis remains unknown. We show, for the first time, that noroviruses can infect and replicate in a physiologically relevant 3-dimensional (3-D), organoid model of human small intestinal epithelium. This level of cellular differentiation was achieved by growing the cells on porous collagen-I coated microcarrier beads under conditions of physiological fluid shear in rotating wall vessel bioreactors. Microscopy, PCR, and fluorescent in situ hybridization provided evidence of norovirus infection. Cytopathic effect and norovirus RNA were detected at each of the 5 cell passages for genogroup I and II viruses. Our results demonstrate that the highly differentiated 3-D cell culture model can support the natural growth of human noroviruses, whereas previous attempts that used differentiated monolayer cultures failed.
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- 2007
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18. Three-dimensional organotypic models of human colonic epithelium to study the early stages of enteric salmonellosis.
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Höner zu Bentrup K, Ramamurthy R, Ott CM, Emami K, Nelman-Gonzalez M, Wilson JW, Richter EG, Goodwin TJ, Alexander JS, Pierson DL, Pellis N, Buchanan KL, and Nickerson CA
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- Bacterial Adhesion, Colon cytology, Cytoplasm microbiology, HT29 Cells, Humans, Immunohistochemistry, Interleukin-8 biosynthesis, Intestinal Mucosa cytology, Microscopy, Electron, Scanning, Organoids chemistry, Organoids cytology, Organoids ultrastructure, Salmonella typhimurium growth & development, Salmonella typhimurium physiology, Cell Culture Techniques, Colon microbiology, Intestinal Mucosa microbiology, Organoids microbiology, Salmonella typhimurium pathogenicity
- Abstract
In vitro cell culture models used to study how Salmonella initiates disease at the intestinal epithelium would benefit from the recognition that organs and tissues function in a three-dimensional (3-D) environment and that this spatial context is necessary for development of cultures that more realistically resemble in vivo tissues/organs. Our aim was to establish and characterize biologically meaningful 3-D models of human colonic epithelium and apply them to study the early stages of enteric salmonellosis. The human colonic cell line HT-29 was cultured in 3-D and characterized by immunohistochemistry, histology, and scanning electron microscopy. Wild-type Salmonella typhimurium and an isogenic SPI-1 type three secretion system (TTSS) mutant derivative (invA) were used to compare the interactions with 3-D cells and monolayers in adherence/invasion, tissue pathology, and cytokine expression studies. The results showed that 3-D culture enhanced many characteristics normally associated with fully differentiated, functional intestinal epithelia in vivo, including better organization of junctional, extracellular matrix, and brush-border proteins, and highly localized mucin production. Wild-type Salmonella demonstrated increased adherence, but significantly lower invasion for 3-D cells. Interestingly, the SPI-I TTSS mutant showed wild-type ability to invade into the 3-D cells but did not cause significant structural changes to these cells. Moreover, 3-D cells produced less interleukin-8 before and after Salmonella infection. These results suggest that 3-D cultures of human colonic epithelium provide valuable alternative models to study human enteric salmonellosis with potential for novel insight into Salmonella pathogenesis.
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- 2006
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19. Elemental analysis of Mycobacterium avium-, Mycobacterium tuberculosis-, and Mycobacterium smegmatis-containing phagosomes indicates pathogen-induced microenvironments within the host cell's endosomal system.
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Wagner D, Maser J, Lai B, Cai Z, Barry CE 3rd, Höner Zu Bentrup K, Russell DG, and Bermudez LE
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- Animals, Electron Probe Microanalysis methods, Endosomes metabolism, Endosomes ultrastructure, Humans, Interferon-gamma pharmacology, Iron metabolism, Macrophage Activation immunology, Macrophages, Peritoneal immunology, Macrophages, Peritoneal microbiology, Macrophages, Peritoneal ultrastructure, Mice, Mice, Inbred C57BL, Mutation, Mycobacterium avium pathogenicity, Mycobacterium avium ultrastructure, Mycobacterium smegmatis pathogenicity, Mycobacterium smegmatis ultrastructure, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis pathogenicity, Mycobacterium tuberculosis ultrastructure, Phagosomes metabolism, Phagosomes ultrastructure, Siderophores deficiency, Siderophores genetics, Tumor Necrosis Factor-alpha pharmacology, Vacuoles metabolism, Vacuoles microbiology, Vacuoles ultrastructure, Endosomes microbiology, Mycobacterium avium metabolism, Mycobacterium smegmatis metabolism, Mycobacterium tuberculosis metabolism, Phagosomes microbiology, Trace Elements metabolism
- Abstract
Mycobacterium avium and Mycobacterium tuberculosis are human pathogens that infect and replicate within macrophages. Both organisms live in phagosomes that fail to fuse with lysosomes and have adapted their lifestyle to accommodate the changing environment within the endosomal system. Among the many environmental factors that could influence expression of bacterial genes are the concentrations of single elements within the phagosomes. We used a novel hard x-ray microprobe with suboptical spatial resolution to analyze characteristic x-ray fluorescence of 10 single elements inside phagosomes of macrophages infected with M. tuberculosis and M. avium or with avirulent M. smegmatis. The iron concentration decreased over time in phagosomes of macrophages infected with Mycobacterium smegmatis but increased in those infected with pathogenic mycobacteria. Autoradiography of infected macrophages incubated with (59)Fe-loaded transferrin demonstrated that the bacteria could acquire iron delivered via the endocytic route, confirming the results obtained in the x-ray microscopy. In addition, the concentrations of chlorine, calcium, potassium, manganese, copper, and zinc were shown to differ between the vacuole of pathogenic mycobacteria and M. smegmatis. Differences in the concentration of several elements between M. avium and M. tuberculosis vacuoles were also observed. Activation of macrophages with recombinant IFN-gamma or TNF-alpha before infection altered the concentrations of elements in the phagosome, which was not observed in cells activated following infection. Siderophore knockout M. tuberculosis vacuoles exhibited retarded acquisition of iron compared with phagosomes with wild-type M. tuberculosis. This is a unique approach to define the environmental conditions within the pathogen-containing compartment.
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- 2005
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20. Low-shear modeled microgravity: a global environmental regulatory signal affecting bacterial gene expression, physiology, and pathogenesis.
- Author
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Nickerson CA, Ott CM, Wilson JW, Ramamurthy R, LeBlanc CL, Höner zu Bentrup K, Hammond T, and Pierson DL
- Subjects
- Bacterial Infections microbiology, Bacterial Infections physiopathology, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cells, Cultured, Gene Expression Regulation, Bacterial, Humans, Models, Biological, Stress, Mechanical, Virulence, Bacteria growth & development, Bacteria pathogenicity, Bioreactors, Gene Expression Profiling, Weightlessness Simulation
- Abstract
Bacteria inhabit an impressive variety of ecological niches and must adapt constantly to changing environmental conditions. While numerous environmental signals have been examined for their effect on bacteria, the effects of mechanical forces such as shear stress and gravity have only been investigated to a limited extent. However, several important studies have demonstrated a key role for the environmental signals of low shear and/or microgravity in the regulation of bacterial gene expression, physiology, and pathogenesis [Chem. Rec. 1 (2001) 333; Appl. Microbiol. Biotechnol. 54 (2000) 33; Appl. Environ. Microbiol. 63 (1997) 4090; J. Ind. Microbiol. 18 (1997) 22; Curr. Microbiol. 34(4) (1997) 199; Appl. Microbiol. Biotechnol. 56(3-4) (2001) 384; Infect Immun. 68(6) (2000) 3147; Cell 109(7) (2002) 913; Appl. Environ. Microbiol. 68(11) (2002) 5408; Proc. Natl. Acad. Sci. U. S. A. 99(21) (2002) 13807]. The response of bacteria to these environmental signals, which are similar to those encountered during prokaryotic life cycles, may provide insight into bacterial adaptations to physiologically relevant conditions. This review focuses on the current and potential future research trends aimed at understanding the effect of the mechanical forces of low shear and microgravity analogues on different bacterial parameters. In addition, this review also discusses the use of microgravity technology to generate physiologically relevant human tissue models for research in bacterial pathogenesis.
- Published
- 2003
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21. Biochemical and structural studies of malate synthase from Mycobacterium tuberculosis.
- Author
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Smith CV, Huang CC, Miczak A, Russell DG, Sacchettini JC, and Höner zu Bentrup K
- Subjects
- Amino Acid Sequence, Base Sequence, Catalysis, DNA Primers, Glyoxylates metabolism, Malate Synthase chemistry, Models, Molecular, Molecular Sequence Data, Protein Conformation, Sequence Homology, Amino Acid, Substrate Specificity, Malate Synthase metabolism, Mycobacterium tuberculosis enzymology
- Abstract
Establishment or maintenance of a persistent infection by Mycobacterium tuberculosis requires the glyoxylate pathway. This is a bypass of the tricarboxylic acid cycle in which isocitrate lyase and malate synthase (GlcB) catalyze the net incorporation of carbon during growth of microorganisms on acetate or fatty acids as the primary carbon source. The glcB gene from M. tuberculosis, which encodes malate synthase, was cloned, and GlcB was expressed in Escherichia coli. The influence of media conditions on expression in M. tuberculosis indicated that this enzyme is regulated differentially to isocitrate lyase. Purified GlcB had K(m) values of 57 and 30 microm for its substrates glyoxylate and acetyl coenzyme A, respectively, and was inhibited by bromopyruvate, oxalate, and phosphoenolpyruvate. The GlcB structure was solved to 2.1-A resolution in the presence of glyoxylate and magnesium. We also report the structure of GlcB in complex with the products of the reaction, coenzyme A and malate, solved to 2.7-A resolution. Coenzyme A binds in a bent conformation, and the details of its interactions are described, together with implications on the enzyme mechanism.
- Published
- 2003
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22. Mycobacterial persistence: adaptation to a changing environment.
- Author
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Höner zu Bentrup K and Russell DG
- Subjects
- Animals, Bacterial Proteins genetics, Bacterial Proteins metabolism, Chronic Disease, Gene Expression Regulation, Bacterial, Humans, Mycobacterium tuberculosis genetics, Time Factors, Adaptation, Physiological, Mycobacterium tuberculosis pathogenicity, Mycobacterium tuberculosis physiology, Tuberculosis microbiology
- Abstract
Mycobacterium tuberculosis is a bacterial pathogen that can persist within an infected individual for extended periods of time without causing overt, clinical disease, in a state normally referred to as latent or chronic tuberculosis. Although the replicative state of the bacterium during this period is a matter of some conjecture, recent developments have indicated that the bacterium requires the regulated expression of a set of genes and metabolic pathways to maintain a persistent infection in an immunocompetent host. The characterization of these gene products and their role in bacterial metabolism and physiology is starting to provide insights into the mechanisms that M. tuberculosis has evolved to adopt its highly successful mode of pathogenicity.
- Published
- 2001
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23. Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase.
- Author
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McKinney JD, Höner zu Bentrup K, Muñoz-Elías EJ, Miczak A, Chen B, Chan WT, Swenson D, Sacchettini JC, Jacobs WR Jr, and Russell DG
- Subjects
- Animals, Fatty Acids metabolism, Isocitrate Lyase genetics, Lung microbiology, Macrophage Activation, Macrophages immunology, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Knockout, Mutagenesis, Mycobacterium tuberculosis enzymology, Mycobacterium tuberculosis immunology, Mycobacterium tuberculosis pathogenicity, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Tuberculosis enzymology, Tuberculosis immunology, Virulence genetics, Bacterial Proteins, Isocitrate Lyase physiology, Macrophages microbiology, Mycobacterium tuberculosis physiology, Tuberculosis microbiology
- Abstract
Mycobacterium tuberculosis claims more human lives each year than any other bacterial pathogen. Infection is maintained in spite of acquired immunity and resists eradication by antimicrobials. Despite an urgent need for new therapies targeting persistent bacteria, our knowledge of bacterial metabolism throughout the course of infection remains rudimentary. Here we report that persistence of M. tuberculosis in mice is facilitated by isocitrate lyase (ICL), an enzyme essential for the metabolism of fatty acids. Disruption of the icl gene attenuated bacterial persistence and virulence in immune-competent mice without affecting bacterial growth during the acute phase of infection. A link between the requirement for ICL and the immune status of the host was established by the restored virulence of delta icl bacteria in interferon-gamma knockout mice. This link was apparent at the level of the infected macrophage: Activation of infected macrophages increased expression of ICL, and the delta icl mutant was markedly attenuated for survival in activated but not resting macrophages. These data suggest that the metabolism of M. tuberculosis in vivo is profoundly influenced by the host response to infection, an observation with important implications for the treatment of chronic tuberculosis.
- Published
- 2000
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24. Characterization of activity and expression of isocitrate lyase in Mycobacterium avium and Mycobacterium tuberculosis.
- Author
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Höner Zu Bentrup K, Miczak A, Swenson DL, and Russell DG
- Subjects
- Acetates metabolism, Cloning, Molecular, Escherichia coli metabolism, Gene Expression Regulation, Enzymologic, Hydrogen-Ion Concentration, Isocitrate Lyase chemistry, Isocitrate Lyase isolation & purification, Isoenzymes chemistry, Isoenzymes isolation & purification, Isoenzymes metabolism, Kinetics, Open Reading Frames, Palmitates metabolism, Recombinant Proteins metabolism, Succinic Acid metabolism, Bacterial Proteins, Isocitrate Lyase metabolism, Mycobacterium avium enzymology, Mycobacterium tuberculosis enzymology
- Abstract
Analysis by two-dimensional gel electrophoresis revealed that Mycobacterium avium expresses several proteins unique to an intracellular infection. One abundant protein with an apparent molecular mass of 50 kDa was isolated, and the N-terminal sequence was determined. It matches a sequence in the M. tuberculosis database (Sanger) with similarity to the enzyme isocitrate lyase of both Corynebacterium glutamicum and Rhodococcus fascians. Only marginal similarity was observed between this open reading frame (ORF) (termed icl) and a second distinct ORF (named aceA) which exhibits a low similarity to other isocitrate lyases. Both ORFs can be found as distinct genes in the various mycobacterial databases recently published. Isocitrate lyase is a key enzyme in the glyoxylate cycle and is essential as an anapleurotic enzyme for growth on acetate and certain fatty acids as carbon source. In this study we express and purify Icl, as well as AceA proteins, and show that both exhibit isocitrate lyase activity. Various known inhibitors for isocitrate lyase were effective. Furthermore, we present evidence that in both M. avium and M. tuberculosis the production and activity of the isocitrate lyase is enhanced under minimal growth conditions when supplemented with acetate or palmitate.
- Published
- 1999
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25. Crystallization and preliminary X-ray analysis of the bacterial ATP-binding-cassette (ABC) protein MalK.
- Author
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Schmees G, Höner zu Bentrup K, Schneider E, Vinzenz D, and Ermler U
- Subjects
- ATP-Binding Cassette Transporters genetics, Bacterial Proteins genetics, Crystallization, Crystallography, X-Ray, Escherichia coli genetics, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins isolation & purification, Salmonella typhimurium genetics, ATP-Binding Cassette Transporters chemistry, ATP-Binding Cassette Transporters isolation & purification, Bacterial Proteins chemistry, Bacterial Proteins isolation & purification, Escherichia coli Proteins
- Abstract
The ATP-binding protein, MalK, of the bacterial ABC (ATP-binding-cassette) transport complex MalFGK2 provides the energy for the translocation of maltose and maltodextrins across the cytoplasmic membrane. The MalK protein from Salmonella typhimurium was overexpressed in Escherichia coli and crystallized by the hanging-drop method using (NH4)2SO4as a precipitant. The crystals belong to space group P6x22 (most probably x = 1 or 5) with cell dimensions a = 181.8 and c = 182.5 A, corresponding to three or four molecules per asymmetric unit. They diffract to a resolution of about 3 A on a synchrotron X-ray source and are suitable for structure determination.
- Published
- 1999
- Full Text
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26. Maltose transport in Aeromonas hydrophila: purification, biochemical characterization and partial protein sequence analysis of a periplasmic maltose-binding protein.
- Author
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Höner zu Bentrup K, Schmid R, and Schneider E
- Subjects
- Amino Acid Sequence, Biological Transport drug effects, Carbohydrate Metabolism, Carbohydrates pharmacology, Carrier Proteins chemistry, Escherichia coli genetics, Escherichia coli metabolism, Genetic Complementation Test, Maltose pharmacology, Maltose-Binding Proteins, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid, ATP-Binding Cassette Transporters, Aeromonas hydrophila metabolism, Bacterial Proteins metabolism, Carrier Proteins metabolism, Escherichia coli Proteins, Maltose metabolism, Monosaccharide Transport Proteins, Periplasmic Binding Proteins
- Abstract
A clinical isolate of Aeromonas hydrophila was demonstrated to transport [14C]maltose with similar kinetics to enteric bacteria (Km: 0.3 microM; Vmax: 22 nmol min-1 per 10(9) cells). The uptake of [14C]maltose was completely inhibited in the presence of unlabelled maltose or maltodextrins, whereas other mono- and disaccharides, such as glucose, galactose, sucrose, lactose or melibiose, had no effect. A protein with an apparent molecular mass of 39 kDa (maltose-binding protein; MBP) was identified in osmotic-shock fluid of maltose-grown cells by SDS-gel electrophoresis, and was purified to homogeneity by either amylose affinity chromatography or ion-exchange chromatography. Equilibrium dialysis experiments revealed the ability of the purified protein to bind [14C]maltose with high affinity (KD = 1.6 microM). Unlabelled maltose and maltodextrins competed for the binding site. In a reconstitution experiment, A. hydrophila MBP poorly restored the transport activity of a binding-protein-deficient Escherichia coli (delta malE) mutant. N-terminal sequence analyses of the purified native protein and of peptides generated by cleavage with CNBr and subsequently separated by HPLC revealed about 56% identical amino acid residues, as compared to enterobacterial MBPs. We conclude that maltose is transported into A. hydrophila via a binding-protein-dependent transport system.
- Published
- 1994
- Full Text
- View/download PDF
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