4,824 results on '"HETEROPLASMY"'
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2. Chapter 108 - Mitochondrial Disease Diagnosis
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McCormick, Elizabeth M. and Falk, Marni J.
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- 2025
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3. Chapter 97 - Patterns of Genetic Transmission
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Scott, Daryl A. and Lee, Brendan
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- 2025
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4. Evaluation of the MDM-score system for screening mitochondrial diabetes mellitus in newly diagnosed diabetes patients: a multi-center cohort study in China.
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Ma, Fuhui, Zhao, Jing, Chen, Yan, Luo, Yunzhi, Du, Yuxuan, Li, Xia, Xu, Tao, Zhou, Zhiguang, Zhou, Kaixin, and Guo, Yanying
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TYPE 2 diabetes ,SYSTOLIC blood pressure ,GENETIC testing ,BODY mass index ,DIABETES - Abstract
Objective: To evaluate the performance of MDM-score system in screening for mitochondrial diabetes mellitus (MDM) with m.3243A>G mutation in newly diagnosed diabetes. Methods: From 2015 to 2017, we recruited 5130 newly diagnosed diabetes patients distributed in 46 hospitals in China. Their DNA samples were subjected to targeted sequencing of 37 genes, including the mitochondrial m.3243A>G mutation. Based on this cohort, we analyzed the clinical characteristics of MDM and type 2 diabetes (T2DM), and evaluated the overall efficacy of the MDM-score through ROC curve analysis. Results: MDM patients were diagnosed at a younger age (P =0.002) than T2DM patients. They also had a higher proportion of females, lower body mass index, lower height, lower weight, lower systolic blood pressure, and lower fasting C-peptide (P < 0.05). Among 48 MDM patients, the m.3243A>G heteroplasmy level was higher in MDM score ≥ 3 than in MDM score < 3 (P = 0.0281). There were 23 cases with MDM-score ≥ 3 in clinical T2DM, with an AUC of 0.612 (95% CI: 0.540-0.683, P < 0.001) on ROC curve analysis, yielding sensitivity of 47.9%, specificity of 74.4%, positive predictive value of 1.9%, and negative predictive value of 99.3%. This suggests that almost half of MDM patients can be identified by the MDM score system. Conclusions: The MDM-score is effective for screening MDM in newly diagnosed clinical T2DM, and some metrics may help to improve its performance in the future, thereby assisting clinicians in identifying suitable patients for genetic testing, and preventing misdiagnosis and mismanagement of MDM patients. [ABSTRACT FROM AUTHOR]
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- 2025
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5. A Case of Late-Onset Leber’s Hereditary Optic Neuropathy in Association with Heteroplasmic m.11778G>A/ND4 Mutation.
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Portaro, Giacomo, Cavallieri, Francesco, Amore, Giulia, Carbonelli, Michele, Pelloni, Simone, Cavallieri, Giuseppe, Carelli, Valerio, Valzania, Franco, and Morgia, Chiara La
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VITAMIN B12 deficiency , *VISUAL acuity , *VISUAL fields , *SMOKING , *DIFFERENTIAL diagnosis - Abstract
A 68-year-old man described a progressive, painless, and bilateral reduction of visual acuity, with greater difficulties in central vision, over a period of 3 years. His past medical history was unremarkable, and he admitted a long exposure to tobacco smoking and moderate daily alcohol intake. The first ophthalmological evaluation confirmed a bilateral reduction of visual acuity, without other major findings. Visual fields showed a central scotoma in the right eye and a temporal pseudo-hemianopia in the left eye. The neurological examination was unremarkable. A slight cobalamin deficiency was detected after the first panel of investigations, and he was diagnosed and treated for the cause that seemed most obvious. Surprisingly, nutritional optic neuropathy was not his final diagnosis. This case shows how the paraclinical findings may help to address the correct diagnosis, summarizing a comprehensive approach to patients with progressive and bilateral visual loss and highlighting the main differential diagnosis. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Detection of single nucleotide variants in the mitochondrial genome of healthy mice and humans.
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Varela-Echavarría, Alfredo, Contreras-Ramírez, Kenya L., Lozano-Flores, Carlos, and Hernández-Rosales, Maribel
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MITOCHONDRIAL DNA , *SINGLE nucleotide polymorphisms , *NEUROMUSCULAR diseases , *BASE pairs , *PRIMATES - Abstract
AbstractSingle nucleotide mutations in the mitochondrial genome are linked to aging in humans, primates, and rodents and cause neuromuscular diseases in humans. Load of mitochondrial variants in healthy tissues, however, is little known. Employing an unbiased detection method with no prior enzymatic amplification, we observed that the mitochondrial genome of embryonic, adult, and aged mouse brain from two different strains contains a diversity of single nucleotide variants with no age-related increase in abundance. We also observed de novo variants in single oocytes and adult liver arising at 5x10−5 and 8x10−6 substitutions per base pair per generation, respectively. Moreover, we found variants in human placenta of healthy donors that may reach up to 66% of all mitochondrial genome copies. Increase in the heteroplasmy of the variants observed in healthy mouse and human tissues and of those arisen de novo at high frequency in mice may lead to mitochondrial dysfunction and disease. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Misregulation of mitochondrial 6mA promotes the propagation of mutant mtDNA and causes aging in C. elegans.
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Hahn, Anne, Hung, Grace Ching Ching, Ahier, Arnaud, Dai, Chuan-Yang, Kirmes, Ina, Forde, Brian M., Campbell, Daniel, Lee, Rachel Shin Yie, Sucic, Josiah, Onraet, Tessa, and Zuryn, Steven
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In virtually all eukaryotes, the mitochondrial DNA (mtDNA) encodes proteins necessary for oxidative phosphorylation (OXPHOS) and RNAs required for their synthesis. The mechanisms of regulation of mtDNA copy number and expression are not completely understood but crucially ensure the correct stoichiometric assembly of OXPHOS complexes from nuclear- and mtDNA-encoded subunits. Here, we detect adenosine N6-methylation (6mA) on the mtDNA of diverse animal and plant species. This modification is regulated in C. elegans by the DNA methyltransferase DAMT-1 and demethylase ALKB-1. Misregulation of mtDNA 6mA through targeted modulation of these activities inappropriately alters mtDNA copy number and transcript levels, impairing OXPHOS function, elevating oxidative stress, and shortening lifespan. Compounding these defects, mtDNA 6mA hypomethylation promotes the cross-generational propagation of a deleterious mtDNA. Together, these results reveal that mtDNA 6mA is highly conserved among eukaryotes and regulates lifespan by influencing mtDNA copy number, expression, and heritable mutation levels in vivo. [Display omitted] • 6mA DNA methylation on mtDNA is highly conserved in plants and animals • In C. elegans , mtDNA 6mA is modulated by DAMT-1 and ALKB-1 • 6mA regulates mtDNA copy number, expression, organismal health, and lifespan • 6mA regulates transmission and propagation of mtDNA mutations across generations Hahn et al. report the presence of 6mA, a DNA modification, on the mitochondrial (mt)DNA of various animal and plant species. Modulating the activity of 6mA enzymatic modifiers implicates 6mA in regulating mtDNA replication and expression and the transmission of mtDNA mutations across generations, ultimately affecting mitochondrial health and organismal lifespan. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Knowledge of NUMTs and mitochondrial DNA specific primer designing is of utmost importance to avoid misidentification of heteroplasmic mutations.
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Saha, Tania, Ganguly, Kausik, Bhowmick, Bismoy, Mitra, Sagnik, Bhattacharyya, Ankita, Dutta, Tithi, and Sengupta, Mainak
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NUMTs (Nuclear DNA sequences of mitochondrial origin) are regions of mitochondrial DNA (mtDNA), integrated into the nuclear genome in course of evolution. Hence, mtDNA-specific primer designing becomes important for allowing the correct detection and quantification of mtDNA heteroplasmy. For this study, through extensive data mining we collected the primer information for mtDNA mutations reported in three mitochondrial diseases (MELAS, LHON, Leigh disease) along with Parkinson's disease that has a mitochondrial implication. Through in silico PCR and BLASTn, we assessed if those primers have the propensity to anneal within NUMTs and thus co-amplify the concerned mtDNA segment as well as the NUMT(s). BLASTn also revealed if the concerned mutations in mtDNA are the actual bases in the co-amplified NUMTs and ENSEMBL mining detected if they coincide with known polymorphisms in the same. We detected that for ~ 69% (86 out of 125) of the heteroplasmic mutations, non-specific primers have been used that could co-amplify NUMTs and thus, depending upon the status of the base in question within it, may lead to false allele calls or erroneous quantification of heteroplasmic mtDNA mutation. In fact, for two of the reported mutations, the mutant bases in mtDNA were the actual bases in the NUMTs; while in nine cases, polymorphisms in the NUMTs coincided with the precise location of mtDNA mutation and the mutated bases were found to be the same as that of the polymorphic variants in the NUMTs. This study thus raises a note of concern towards primer designing in conventional mtDNA mutation detection studies. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Survey of Echinochloa weed species in rice fields using a chloroplast DNA marker and spikelet characteristics identifies accessions with possible paternal inheritance and heteroplasmy.
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Sakthivel, Kausalya, Dharbaranyam, Balasundari, Raju, Kalaimani, and Venkataraman, Gayatri
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Hexaploid Echinochloa. crus-galli var. crus-galli and tetraploid E. crus-galli var. oryzicola are major weeds in rice fields. Supplementing molecular marker data with morphological and morphometric characterization is considered a reliable method for species identification. In the present study, Echinochloa weed accessions were collected from rice fields in Tamil Nadu, India [as plants (12) or seeds (10)]. Species level identification was carried out using the distinguishing chloroplastic DNA marker, trnT-L. Eight accessions were identified as E. crus-galli consistently across T
0 and T1 generations and twelve others over a single generation (T0 or T1 ). Spikelet length is an important feature used to distinguish E. crus-galli and E. oryzicola. Accession P1, identified as E. oryzicola, using a chloroplast DNA marker (trnT-L insertion), has a spikelet length more consistent with E. crus-galli (≤ 4 mm) than E. oryzicola. Thus, 'inconsistent' accession P1 may have inherited DNA paternally from E. oryzicola, instead of the unknown maternal donor usually reported in literature for E. crus-galli. We also report, for the first time, the occurrence of heteroplasmic variation in Echinochloa (accession D4) over two successive generations (T0 and T1 ). We also suggest a caveat in the use of morphometric spikelet characters and chloroplastic DNA marker data alone to classify Echinochloa weed species conclusively. Occurrence of paternal plastid inheritance and heteroplasmy may have implications on weed fitness, including range expansion and selective advantage(s) in a rapidly changing environment (herbicide or stress tolerance). [ABSTRACT FROM AUTHOR]- Published
- 2024
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10. The quality and detection limits of mitochondrial heteroplasmy by long read nanopore sequencing
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Barbara Slapnik, Robert Šket, Klementina Črepinšek, Tine Tesovnik, Barbara Jenko Bizjan, and Jernej Kovač
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mtDNA ,Heteroplasmy ,Mitochondrial disease ,Long-read sequencing ,Medicine ,Science - Abstract
Abstract This study evaluates long-read and short-read sequencing for mitochondrial DNA (mtDNA) heteroplasmy detection. 592,315 bootstrapped datasets generated from two single-nucleotide mismatched ultra-deep sequenced mtDNA samples were used to assess basecalling error and accuracy, limit of heteroplasmy detection, and heteroplasmy detection across various coverage depths. Results showed high Phred scores of data with GC-rich sequence bias for long reads. Limit of detection of 12% heteroplasmy was identified, showing strong correlation (R2 ≥ 0.955) with expected heteroplasmy but underreporting tendency of high-level variants. Nanopore sequencing shows potential for direct applicability in mitochondrial diseases diagnostics, but stringent validation processes to ensure diagnostic result quality are required.
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- 2024
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11. Real-time assessment of mitochondrial DNA heteroplasmy dynamics at the single-cell level.
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Roussou, Rodaria, Metzler, Dirk, Padovani, Francesco, Thoma, Felix, Schwarz, Rebecca, Shraiman, Boris, Schmoller, Kurt M, and Osman, Christof
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MITOCHONDRIAL dynamics , *CELL populations , *STEM cells , *CELL division , *FISSION (Asexual reproduction) , *MITOCHONDRIAL DNA - Abstract
Mitochondrial DNA (mtDNA) is present in multiple copies within cells and is required for mitochondrial ATP generation. Even within individual cells, mtDNA copies can differ in their sequence, a state known as heteroplasmy. The principles underlying dynamic changes in the degree of heteroplasmy remain incompletely understood, due to the inability to monitor this phenomenon in real time. Here, we employ mtDNA-based fluorescent markers, microfluidics, and automated cell tracking, to follow mtDNA variants in live heteroplasmic yeast populations at the single-cell level. This approach, in combination with direct mtDNA tracking and data-driven mathematical modeling reveals asymmetric partitioning of mtDNA copies during cell division, as well as limited mitochondrial fusion and fission frequencies, as critical driving forces for mtDNA variant segregation. Given that our approach also facilitates assessment of segregation between intact and mutant mtDNA, we anticipate that it will be instrumental in elucidating the mechanisms underlying the purifying selection of mtDNA. Synopsis: The basis for dynamic changes in mitochondria DNA variations in cell populations, known as heteroplasmy, remains unclear. Here, live-cell tracking of mtDNA variants in yeast populations reveals mechanistic principles underlying mtDNA variant segregation. mtDNA variants encoding fluorescent reporters facilitate microscopy approaches for monitoring mtDNA variant segregation in real-time in a dividing yeast population. Asymmetric partitioning of mtDNA copies between mother and daughter cells as well as mitochondrial fission rates determine the rate of mtDNA variant segregation. mtDNA variant segregation is delayed in ∆mrx6 cells with increased mtDNA copy number. The imaging approach allows monitoring of purifying selection against mutant mtDNA. Tracking mtDNA variants in live yeast populations reveals asymmetric partitioning of mtDNA copies during cell division as well as limited mitochondrial fusion/fission frequencies as critical drivers of mtDNA variant segregation. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Association of Inflammatory Mediators with Mitochondrial DNA Variants in Geriatric COVID-19 Patients.
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Casoli, Tiziana, Bonfigli, Anna Rita, Di Rosa, Mirko, Giorgetti, Belinda, Balietti, Marta, Giacconi, Robertina, Cardelli, Maurizio, Piacenza, Francesco, Marchegiani, Francesca, Marcheselli, Fiorella, Recchioni, Rina, Galeazzi, Roberta, Vaiasicca, Salvatore, Maria Lamedica, Adrianapia, Fumagalli, Alessia, Ferrara, Letizia, and Lattanzio, Fabrizia
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MITOCHONDRIAL DNA , *COVID-19 , *COMORBIDITY - Abstract
COVID-19 remains a serious concern for elderly individuals with underlying comorbidities. SARS-CoV-2 can target and damage mitochondria, potentially leading to mutations in mitochondrial DNA (mtDNA). This study aimed to evaluate single nucleotide substitutions in mtDNA and analyze their correlation with inflammatory biomarkers in elderly COVID-19 patients. A total of 30 COVID-19 patients and 33 older adult controls without COVID-19 (aged over 65 years) were enrolled. mtDNA was extracted from buffy coat samples and sequenced using a chip-based resequencing system (MitoChip v2.0) which detects both homoplasmic and heteroplasmic mtDNA variants (40-60% heteroplasmy) and allows the assessment of low-level heteroplasmy (<10% heteroplasmy). Serum concentrations of IL-6, IFN-a, TNF-a and IL-10 were determined in patients by a high-sensitivity immunoassay. We found a higher burden of total heteroplasmic variants in COVID-19 patients compared to controls with a selective increment in ND1 and COIII genes. Low-level heteroplasmy was significantly elevated in COVID-19 patients, especially in genes of the respiratory complex I. Both heteroplasmic variant burden and low-level heteroplasmy were associated with increased levels of IL-6, TNF-a, and IFN-a. These findings suggest that SARS-CoV-2 may induce mtDNA mutations that are related to the degree of inflammation. [ABSTRACT FROM AUTHOR]
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- 2024
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13. The quality and detection limits of mitochondrial heteroplasmy by long read nanopore sequencing.
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Slapnik, Barbara, Šket, Robert, Črepinšek, Klementina, Tesovnik, Tine, Bizjan, Barbara Jenko, and Kovač, Jernej
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DETECTION limit ,MITOCHONDRIA ,DNA sequencing ,MITOCHONDRIAL DNA - Abstract
This study evaluates long-read and short-read sequencing for mitochondrial DNA (mtDNA) heteroplasmy detection. 592,315 bootstrapped datasets generated from two single-nucleotide mismatched ultra-deep sequenced mtDNA samples were used to assess basecalling error and accuracy, limit of heteroplasmy detection, and heteroplasmy detection across various coverage depths. Results showed high Phred scores of data with GC-rich sequence bias for long reads. Limit of detection of 12% heteroplasmy was identified, showing strong correlation (R
2 ≥ 0.955) with expected heteroplasmy but underreporting tendency of high-level variants. Nanopore sequencing shows potential for direct applicability in mitochondrial diseases diagnostics, but stringent validation processes to ensure diagnostic result quality are required. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
14. The Clinical Spectrum of Mosaic Genetic Disease.
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Geiger, Hanabi, Furuta, Yutaka, van Wyk, Suné, Phillips III, John A., and Tinker, Rory J.
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Genetic mosaicism is defined as the presence of two or more cell lineages with different genotypes arising from a single zygote. Mosaicism has been implicated in hundreds of genetic diseases with diverse genetic etiologies affecting every organ system. Mosaic genetic disease (MDG) is a spectrum that, on the extreme ends, enables survival from genetic severe disorders that would be lethal in a non-mosaic form. On the milder end of the spectrum, mosaicism can result in little if any phenotypic effects but increases the risk of transmitting a pathogenic genotype. In the middle of the spectrum, mosaicism has been implicated in reducing the phenotypic severity of genetic disease. In this review will describe the spectrum of mosaic genetic disease whilst discussing the status of the detection and prevalence of mosaic genetic disease. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Whole Mitochondrial Genome Sequencing Analysis of Canine Testicular Tumours.
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Tkaczyk-Wlizło, Angelika, Kowal, Krzysztof, Śmiech, Anna, and Ślaska, Brygida
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WHOLE genome sequencing , *TANDEM repeats , *TESTIS tumors , *BENIGN tumors , *GENETIC variation - Abstract
Currently, the molecular background based on mitochondrial DNA (mtDNA) analysis of canine testicular tumours is underestimated. The available data mostly focus on histopathological evaluations, with a few reports of nuclear genome (nDNA) studies. Tumourigenesis represents a highly complex and diverse genetic disorder, which can also encompass defects in mtDNA. The aim of this study was to identify molecular changes in whole mitochondrial genome sequences obtained from dogs affected by testicular tumours. Samples of blood, tumour, and healthy tissue were collected from each animal, and mtDNA (ultimately 45 samples) was subsequently sequenced. Thereafter, protein analyses were performed to assess the impact of the identified molecular alterations on the amino acid level. The total number of observed changes included 722 SNPs, 12 mutations, 62 indels, 5 indel mutations, and 35 heteroplasmic sites. The highest number of mtDNA variants in protein-coding genes COX1, COX3, ATP6, ND1, ND4, and ND5 was observed. Interestingly, SNPs were found in 10 out of 22 tRNA genes. Most of the identified mtDNA defects were synonymous changes at the amino acid level. Also, polymorphisms and heteroplasmy were frequently observed in the variable number of tandem repeat (VNTR) regions, especially in its fragment spanning 16,138–16,358 bp. Based on the obtained results, it was possible to select 11 polymorphisms that occurred in all the tested samples (benign, malignant) and an additional five SNPs identified only in benign neoplasms. The comprehensive analysis of malignant testicular tumours demonstrated a significant diversity in their molecular profiles, with changes ranging from 17 to 101 per sample. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Characterization and trans-generation dynamics of mitogene pool in the silver carp (Hypophthalmichthys molitrix).
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Li, Jinlin, Wu, Hengshu, Zhou, Yingna, Liu, Manhong, Zhou, Yongheng, Chu, Jianing, Kamili, Elizabeth, Wang, Wenhui, Yang, Jincheng, Lin, Lijun, Zhang, Qi, Yang, Shuhui, and Xu, Yanchun
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SILVER carp , *GENETIC load , *ONTOGENY , *QUALITY control , *OVUM - Abstract
Multicopied mitogenome are prone to mutation during replication often resulting in heteroplasmy. The derived variants in a cell, organ, or an individual animal constitute a mitogene pool. The individual mitogene pool is initiated by a small fraction of the egg mitogene pool. However, the characteristics and relationship between them has not yet been investigated. This study quantitatively analyzed the heteroplasmy landscape, genetic loads, and selection strength of the mitogene pool of egg and hatchling in the silver carp (Hypophthalmichthys molitrix) using high-throughput resequencing. The results showed heteroplasmic sites distribute across the whole mitogenome in both eggs and hatchlings. The dominant substitution was Transversion in eggs and Transition in hatching accounting for 95.23 % ± 2.07 % and 85.38 % ± 6.94 % of total HP sites, respectively. The total genetic loads were 0.293 ± 0.044 in eggs and 0.228 ± 0.022 in hatchlings ( P = 0.048 ). The d N /d S ratio was 58.03 ± 38.98 for eggs and 9.44 ± 3.93 for hatchlings ( P = 0.037 ). These results suggest that the mitogenomes were under strong positive selection in eggs with tolerance to variants with deleterious effects, while the selection was positive but much weaker in hatchlings showing marked quality control. Based on these findings, we proposed a trans-generation dynamics model to explain differential development mode of the two mitogene pool between oocyte maturation and ontogenesis of offspring. This study sheds light on significance of mitogene pool for persistence of populations and subsequent integration in ecological studies and conservation practices. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Regulation of defective mitochondrial DNA accumulation and transmission in C. elegans by the programmed cell death and aging pathways.
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Flowers, Sagen, Kothari, Rushali, Torres Cleuren, Yamila, Alcorn, Melissa, Ewe, Chee, Alok, Geneva, Fiallo, Samantha, Joshi, Pradeep, and Rothman, Joel
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C. elegans ,aging ,cell biology ,genetics ,genomics ,heteroplasmy ,insulin signaling ,programmed cell death ,purifying selection ,uaDf5 ,Animals ,Caenorhabditis elegans ,DNA ,Mitochondrial ,Apoptosis ,Caspases ,Caenorhabditis elegans Proteins ,Aging - Abstract
The heteroplasmic state of eukaryotic cells allows for cryptic accumulation of defective mitochondrial genomes (mtDNA). Purifying selection mechanisms operate to remove such dysfunctional mtDNAs. We found that activators of programmed cell death (PCD), including the CED-3 and CSP-1 caspases, the BH3-only protein CED-13, and PCD corpse engulfment factors, are required in C. elegans to attenuate germline abundance of a 3.1-kb mtDNA deletion mutation, uaDf5, which is normally stably maintained in heteroplasmy with wildtype mtDNA. In contrast, removal of CED-4/Apaf1 or a mutation in the CED-4-interacting prodomain of CED-3, do not increase accumulation of the defective mtDNA, suggesting induction of a non-canonical germline PCD mechanism or non-apoptotic action of the CED-13/caspase axis. We also found that the abundance of germline mtDNAuaDf5 reproducibly increases with age of the mothers. This effect is transmitted to the offspring of mothers, with only partial intergenerational removal of the defective mtDNA. In mutants with elevated mtDNAuaDf5 levels, this removal is enhanced in older mothers, suggesting an age-dependent mechanism of mtDNA quality control. Indeed, we found that both steady-state and age-dependent accumulation rates of uaDf5 are markedly decreased in long-lived, and increased in short-lived, mutants. These findings reveal that regulators of both PCD and the aging program are required for germline mtDNA quality control and its intergenerational transmission.
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- 2023
18. Sequencing and characterizing human mitochondrial genomes in the biobank-based genomic research paradigm
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Luo, Lintao, Wang, Mengge, Liu, Yunhui, Li, Jianbo, Bu, Fengxiao, Yuan, Huijun, Tang, Renkuan, Liu, Chao, and He, Guanglin
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- 2025
- Full Text
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19. Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons
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Parnika S. Kadam, Zijian Yang, Youtao Lu, Hua Zhu, Yasemin Atiyas, Nishal Shah, Stephen Fisher, Erik Nordgren, Junhyong Kim, David Issadore, and James Eberwine
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Single mitochondrion ,Single-nucleotide variants ,Neurons ,Astrocytes ,Heteroplasmy ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Mitochondrial (mt) heteroplasmy can cause adverse biological consequences when deleterious mtDNA mutations accumulate disrupting “normal” mt-driven processes and cellular functions. To investigate the heteroplasmy of such mtDNA changes, we developed a moderate throughput mt isolation procedure to quantify the mt single-nucleotide variant (SNV) landscape in individual mouse neurons and astrocytes. In this study, we amplified mt-genomes from 1645 single mitochondria isolated from mouse single astrocytes and neurons to (1) determine the distribution and proportion of mt-SNVs as well as mutation pattern in specific target regions across the mt-genome, (2) assess differences in mtDNA SNVs between neurons and astrocytes, and (3) study co-segregation of variants in the mouse mtDNA. Results (1) The data show that specific sites of the mt-genome are permissive to SNV presentation while others appear to be under stringent purifying selection. Nested hierarchical analysis at the levels of mitochondrion, cell, and mouse reveals distinct patterns of inter- and intra-cellular variation for mt-SNVs at different sites. (2) Further, differences in the SNV incidence were observed between mouse neurons and astrocytes for two mt-SNV 9027:G > A and 9419:C > T showing variation in the mutational propensity between these cell types. Purifying selection was observed in neurons as shown by the Ka/Ks statistic, suggesting that neurons are under stronger evolutionary constraint as compared to astrocytes. (3) Intriguingly, these data show strong linkage between the SNV sites at nucleotide positions 9027 and 9461. Conclusions This study suggests that segregation as well as clonal expansion of mt-SNVs is specific to individual genomic loci, which is important foundational data in understanding of heteroplasmy and disease thresholds for mutation of pathogenic variants.
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- 2024
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20. High heteroplasmy is associated with low mitochondrial copy number and selection against non-synonymous mutations in the snail Cepaea nemoralis
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Angus Davison, Mehrab Chowdhury, Margrethe Johansen, Wellcome Sanger Institute Tree of Life programme, Marcela Uliano-Silva, and Mark Blaxter
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Cepaea ,Heteroplasmy ,Mollusc ,Mitochondrial DNA ,Snail ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Molluscan mitochondrial genomes are unusual because they show wide variation in size, radical genome rearrangements and frequently show high variation (> 10%) within species. As progress in understanding this variation has been limited, we used whole genome sequencing of a six-generation matriline of the terrestrial snail Cepaea nemoralis, as well as whole genome sequences from wild-collected C. nemoralis, the sister species C. hortensis, and multiple other snail species to explore the origins of mitochondrial DNA (mtDNA) variation. The main finding is that a high rate of SNP heteroplasmy in somatic tissue was negatively correlated with mtDNA copy number in both Cepaea species. In individuals with under ten mtDNA copies per nuclear genome, more than 10% of all positions were heteroplasmic, with evidence for transmission of this heteroplasmy through the germline. Further analyses showed evidence for purifying selection acting on non-synonymous mutations, even at low frequency of the rare allele, especially in cytochrome oxidase subunit 1 and cytochrome b. The mtDNA of some individuals of Cepaea nemoralis contained a length heteroplasmy, including up to 12 direct repeat copies of tRNA-Val, with 24 copies in another snail, Candidula rugosiuscula, and repeats of tRNA-Thr in C. hortensis. These repeats likely arise due to error prone replication but are not correlated with mitochondrial copy number in C. nemoralis. Overall, the findings provide key insights into mechanisms of replication, mutation and evolution in molluscan mtDNA, and so will inform wider studies on the biology and evolution of mtDNA across animal phyla.
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- 2024
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21. Cortical atrophy is a common phenotypic feature in MELAS patients
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Josef Finsterer
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MELAS ,MT-TL1 ,mtDNA ,Heteroplasmy ,Stroke-like episode ,Surgery ,RD1-811 - Published
- 2025
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22. Characterisation of mitochondrial dynamics and mitochondrial DNA inheritance in Drosophila melanogaster
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Li, Andy Yu Zhi and Ma, Hansong
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Confocal ,Drosophila ,Genetics ,Heteroplasmy ,Insect ,Microscopy ,Mitochondria ,MtDNA - Abstract
Mitochondria are dynamic organelles and there is mounting evidence that mitochondrial dysfunction is linked to a variety of diseases. During spermatogenesis in Drosophila melanogaster, the organisation of mitochondrial networks is altered during each stage of development. This thesis is focused on a novel mitochondrial structure, termed the mitoball, which occurs in the premeiotic spermatocytes in the 16 cell stage. The mitoball is a transient aggregation of mitochondria on one side of the cytoplasm, and little is known about the functionality and dynamics of this structure. First, I found that the mitoball is conserved in multiple insect species. Second, live imaging of the mitoball revealed that the mitoball consists of individual mitochondria which move around in the region of the mitoball. Third, mitochondrial DNA (mtDNA) replication was found to occur in the mitoball stage. Fourth, mitoballs were associated with other cellular structures like the endoplasmic reticulum network, Golgi bodies, and the fusome. Next, I used a reverse genetic screen to identify genes linked to mitochondrial trafficking along microtubules that were required for mitoball assembly: milton, miro, and khc. I also generated an X0 male and found that the loss of the Y chromosome did not affect mitoball formation. To discover new genes linked to the mitoball, I performed a whole genome forward genetic screen using EMS on the second and third chromosome. In total, 8027 EMS mutant lines were screened. Several lines with defective mitochondrial morphology were recovered and sequenced. One EMS line had no mitoballs and had an early stop codon in milton and ssp3. Further mapping of this line revealed that the early stop codon in milton was linked to the absence of mitoballs phenotype and the early stop codon in ssp3 was linked to defects in later stages. Altogether, the mitoball structure has promising characteristics as a system to study mitochondrial dynamics. Furthermore, premeiotic clustering of mitochondria may also be a hallmark of insect spermatogenesis. As a multi-copy genome, mutant mtDNA molecules often co-exist with wild-type counterparts, and the competition in transmission among these genomes is central to the inheritance and progression of mitochondrial disease. Currently, it is not possible to easily manipulate animal mtDNA for genetic studies. It is thus difficult to map sequences in mtDNA that can confer a transmission advantage to certain mitochondrial genomes. One of my projects is designed to employ irradiation and chemical based methods to generate mutant and recombinant mtDNA in order to identify and map mtDNA sequences linked to a transmission advantage. Through this project, several recombinant mitochondrial genomes were isolated and this system allows for the mapping of the mitochondrial genome through the generation of recombinant genomes.
- Published
- 2023
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23. Mechanisms controlling the segregation of mitochondrial DNA heteroplasmy
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Glynos, Angelos and Chinnery, Patrick
- Subjects
Mitochondria ,Mitochondrial DNA ,Heteroplasmy ,Mouse models of mitochondrial disease ,Single cell analysis ,Transcriptomics ,Pyrosequencing ,Cell cycle ,Compensatory pathways ,Mouse organogenesis ,Single cell heteroplasmy - Abstract
Mutations of the mitochondrial DNA (mtDNA) are often the cause behind primary mitochondrial disorders affecting 1:5000 individuals. However, the full extent of the impact that mtDNA mutations have is yet to be comprehensively understood. One of the main reasons behind our slow progress in the field is the multi-copied nature of mtDNA, which suggests that even healthy individuals will carry a small percentage of mutated mtDNA molecules alongside healthy ones, in a state termed heteroplasmy. In cases where the proportion of mutant to healthy mtDNA molecules reaches a critical threshold, diverse and multisystem pathological phenotypes begin to appear. While an individual's mtDNA heteroplasmy level is largely dependent on that of his maternal germline, studies have shown that there are diverse forces, both intra and extracellular in nature that drive segregation. Further complicating this phenomenon, the observed driving forces appear to be mutation- and cell type-specific in their effect. In this dissertation I first describe my work on optimising and validating a protocol that allows us to measure single cell heteroplasmy. Developing this in-house technique, enabled us to perform high-throughput analyses of cell populations of interest while revealing for the first time the intricacies governing single mtDNA heteroplasmy variability at the single cell level. With this protocol in place, I set out to study the heteroplasmy of mouse brain- and spleen-derived populations. In this endeavour, I made use of two novel mouse models that carry a mutation on mitochondrial-tRNA Alanine (mt-Ta), m.5019A > G and m.5024C > T. Recording single cell heteroplasmy values at different timepoints throughout development, we observed that both mutations followed the principles of random genetic drift. The rate of drift exhibited mutation-specific patterns. Moreover, I present a collaborative project geared towards uncovering the impact the two mt-Ta mutations have at the level of the transcriptome on difference cell lineages belonging to E8.5 mouse embryos. I describe the identification of 17 distinct cell lineages and their inherent variability in mtDNA transcript abundance. While no developmental disparities were observed in mutant embryos compared to controls, we did detect an upregulation of mtDNA transcripts in response to the mutation. At the same time, genes that were previously defined as epistatic suppressors/buffers were found to be downregulated. Pseudobulk analysis revealed differential expression of genes both at the level of the organism and that of the cell-lineage. Overall, mice carrying the m.5024C > T mutation seem to mount a greater compensatory transcriptional response compared to their m.5019A > G counterparts. Finally, I explore the relationship between mtDNA heteroplasmy, copy number and the cell cycle. More specifically, making use of a fluorescent cell cycle reporter, I examine mtDNA changes along the cell cycle. Having established a consistent pattern, I assess the impact of genetic manipulation of mtDNA copy number and restriction of glycolysis on cell cycle progression. Finally, I delve into the consequences of large scale mtDNA deletions on the cell's respiratory capacity and examine whether that defect impacts their ability to complete the cell cycle.
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- 2023
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24. Paternal Mitochondrial DNA Leakage in Natural Populations of Large-Scale Loach, Paramisgurnus dabryanus.
- Author
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Qi, Zixin, Shi, Jiaoxu, Yu, Yue, Yin, Guangmei, Zhou, Xiaoyun, and Yu, Yongyao
- Subjects
- *
NUCLEOTIDE sequence , *CYTOPLASMIC inheritance , *HAPLOTYPES , *FISH populations , *NUCLEOTIDE sequencing - Abstract
Simple Summary: Mitochondrial DNA is generally thought to strictly follow maternal inheritance, meaning that vertebrates have just one type of mitochondrial DNA haplotype. However, a very interesting phenomenon occurs in a fish species, Paramisgurnus dabryanus (P. dabryanus), regarding the presence of two distinct mitochondria in one individual. Phylogenetic analysis suggested that interspecific hybridization may occur between P. dabryanus and Misgurnus anguillicaudatus, leading to the transfer of mitochondrial DNA from the father to their offspring. The investigation of natural populations across regions demonstrated that this species commonly possesses two types of mitochondria. Furthermore, qPCR analysis suggested that type I plays a major role. The results of this study help us better understand how animal mitochondrial DNA can differ due to paternal contribution, giving us useful ideas about how mitochondrial genomes evolve and are passed down. Animal mitochondrial DNA is usually considered to comply with strict maternal inheritance, and only one mitochondrial DNA haplotype exists in an individual. However, mitochondrial heteroplasmy, the occurrence of more than one mitochondrial haplotype, has recently been reported in some animals, such as mice, mussels, and birds. This study conducted extensive field surveys to obtain representative samples to investigate the existence of paternal inheritance of mitochondrial DNA (mtDNA) in natural fish populations. Evidence of paternal mitochondrial DNA leakage of P. dabryanus was discovered using high-throughput sequencing and bioinformatics methods. Two distinct mitochondrial haplotypes (16,569 bp for haplotype I and 16,646 bp for haplotype II) were observed, differing by 18.83% in nucleotide sequence. Phylogenetic analysis suggests divergence between these haplotypes and potential interspecific hybridization with M. anguillicaudatus, leading to paternal leakage. In natural populations of P. dabryanus along the Yangtze River, both haplotypes are present, with Type I being dominant (75% copy number). Expression analysis shows that Type I has higher expression levels of ND3 and ND6 genes compared to Type II, suggesting Type I's primary role. This discovery of a species with two mitochondrial types provides a model for studying paternal leakage heterogeneity and insights into mitochondrial genome evolution and inheritance. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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25. Similarity of Human Mitochondrial DNA Nucleotide Substitution Spectra Reconstructed over One and Many Generations.
- Author
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Malyarchuk, B. A.
- Subjects
- *
CHILDREN of immigrants , *NUCLEOTIDE sequencing , *WHOLE genome sequencing , *HUMAN DNA , *INFECTIOUS disease transmission , *MITOCHONDRIAL DNA - Abstract
Abstract—Using phylogenetic analysis of mitochondrial whole genome nucleotide sequences (mtDNA), which allows the study of genetic changes over many generations, a spectrum of nucleotide substitutions (along the L-strand of mtDNA) was reconstructed in European populations. The spectra of mtDNA nucleotide substitutions observed in a heteroplasmic state (at the ≥1 and ≥5% levels) in first generation children were also analyzed. It was found that the spectra of nucleotide substitutions reconstructed over one and many generations practically do not differ in their main parameters: the distribution of pyrimidine and purine substitutions (with predominance of T→C transitions) and the ratio of the number of transitions and transversions. Analysis of the phylogenetic tree of mtDNA haplotypes in Europeans clearly revealed the influence of negative (purifying) selection on mitochondrial gene pools. It is suggested that the selective processes guiding the mtDNA evolution in one and many generations are of a similar nature, i.e., are caused by negative selection. The problem of how mutations occur and spread in mitochondria of germ line cells is discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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26. Single-mitochondrion sequencing uncovers distinct mutational patterns and heteroplasmy landscape in mouse astrocytes and neurons.
- Author
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Kadam, Parnika S., Yang, Zijian, Lu, Youtao, Zhu, Hua, Atiyas, Yasemin, Shah, Nishal, Fisher, Stephen, Nordgren, Erik, Kim, Junhyong, Issadore, David, and Eberwine, James
- Subjects
MITOCHONDRIAL DNA ,ASTROCYTES ,CELL physiology ,NEURONS ,MICE ,MITOCHONDRIA - Abstract
Background: Mitochondrial (mt) heteroplasmy can cause adverse biological consequences when deleterious mtDNA mutations accumulate disrupting "normal" mt-driven processes and cellular functions. To investigate the heteroplasmy of such mtDNA changes, we developed a moderate throughput mt isolation procedure to quantify the mt single-nucleotide variant (SNV) landscape in individual mouse neurons and astrocytes. In this study, we amplified mt-genomes from 1645 single mitochondria isolated from mouse single astrocytes and neurons to (1) determine the distribution and proportion of mt-SNVs as well as mutation pattern in specific target regions across the mt-genome, (2) assess differences in mtDNA SNVs between neurons and astrocytes, and (3) study co-segregation of variants in the mouse mtDNA. Results: (1) The data show that specific sites of the mt-genome are permissive to SNV presentation while others appear to be under stringent purifying selection. Nested hierarchical analysis at the levels of mitochondrion, cell, and mouse reveals distinct patterns of inter- and intra-cellular variation for mt-SNVs at different sites. (2) Further, differences in the SNV incidence were observed between mouse neurons and astrocytes for two mt-SNV 9027:G > A and 9419:C > T showing variation in the mutational propensity between these cell types. Purifying selection was observed in neurons as shown by the Ka/Ks statistic, suggesting that neurons are under stronger evolutionary constraint as compared to astrocytes. (3) Intriguingly, these data show strong linkage between the SNV sites at nucleotide positions 9027 and 9461. Conclusions: This study suggests that segregation as well as clonal expansion of mt-SNVs is specific to individual genomic loci, which is important foundational data in understanding of heteroplasmy and disease thresholds for mutation of pathogenic variants. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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27. Mitochondrial gene heterogeneity related to MELAS syndrome: A review of literature.
- Author
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WEN Limin, LI Ran, HAO Yanlei, KONG Qingxia, and XIA Min
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- *
MELAS syndrome , *NUCLEAR DNA , *MITOCHONDRIAL DNA , *MITOCHONDRIA , *HETEROGENEITY - Abstract
MELAS syndrome is a genetic disease caused by mutations in mitochondrial DNA (mtDNA) or nuclear DNA. Eighty percent of the cases are caused by m.3243A>G mutation. Heteroplasmy, defined as the presence of both normal and mutant mtDNA in cells, is related with the severity of MELAS syndrome. This article reviews the research in mtDNA heterogeneity related to MELAS syndrome, aiming to provide an insight into new therapies for the syndrome. [ABSTRACT FROM AUTHOR]
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- 2024
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28. Our current understanding of the biological impact of endometrial cancer mtDNA genome mutations and their potential use as a biomarker.
- Author
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Khadka, Pabitra, Young, Carolyn K. J., Sachidanandam, Ravi, Brard, Laurent, and Young, Matthew J.
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LEBER'S hereditary optic atrophy ,ENDOMETRIAL cancer ,MITOCHONDRIAL DNA ,SINGLE nucleotide polymorphisms ,BIOMARKERS ,GENOMES - Abstract
Endometrial cancer (EC) is a devastating and common disease affecting women’s health. The NCI Surveillance, Epidemiology, and End Results Program predicted that there would be >66,000 new cases in the United States and >13,000 deaths from EC in 2023, and EC is the sixth most common cancer among women worldwide. Regulation of mitochondrial metabolism plays a role in tumorigenesis. In proliferating cancer cells, mitochondria provide the necessary building blocks for biosynthesis of amino acids, lipids, nucleotides, and glucose. One mechanism causing altered mitochondrial activity is mitochondrial DNA (mtDNA) mutation. The polyploid human mtDNA genome is a circular double-stranded molecule essential to vertebrate life that harbors genes critical for oxidative phosphorylation plus mitochondrial-derived peptide genes. Cancer cells display aerobic glycolysis, known as the Warburg effect, which arises from the needs of fast-dividing cells and is characterized by increased glucose uptake and conversion of glucose to lactate. Solid tumors often contain at least one mtDNA substitution. Furthermore, it is common for cancer cells to harbor mixtures of wild-type and mutant mtDNA genotypes, known as heteroplasmy. Considering the increase in cancer cell energy demand, the presence of functionally relevant carcinogenesis-inducing or environment-adapting mtDNA mutations in cancer seems plausible. We review 279 EC tumor-specific mtDNA single nucleotide variants from 111 individuals from different studies. Many transition mutations indicative of error-prone DNA polymerase γ replication and C to U deamination events were present. We examine the spectrum of mutations and their heteroplasmy and discuss the potential biological impact of recurrent, non-synonymous, insertion, and deletion mutations. Lastly, we explore current EC treatments, exploiting cancer cell mitochondria for therapy and the prospect of using mtDNA variants as an EC biomarker. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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29. T cell activation contributes to purifying selection against the MELAS‐associated m.3243A>G pathogenic variant in blood.
- Author
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Walker, Melissa A., Li, Shuqiang, Livak, Kenneth J., Karaa, Amel, Wu, Catherine J., and Mootha, Vamsi K.
- Abstract
T cells have been shown to maintain a lower percentage (heteroplasmy) of the pathogenic m.3243A>G variant (MT‐TL1, associated with maternally inherited diabetes and deafness [MIDD] and mitochondrial encephalomyopathy with lactic acidosis and stroke‐like episodes [MELAS]). The mechanism(s) underlying this purifying selection, however, remain unknown. Here we report that purified patient memory CD4+ T cells have lower bulk m.3243A>G heteroplasmy compared to naïve CD4+ T cells. In vitro activation of naïve CD4+ m.3243A>G patient T cells results in lower bulk m.3243A>G heteroplasmy after proliferation. Finally, m.3243A>G patient T cell receptor repertoire sequencing reveals relative oligoclonality compared to controls. These data support a role for T cell activation in peripheral, purifying selection against high m.3243A>G heteroplasmy T cells at the level of the cell, in a likely cell‐autonomous fashion. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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30. Heteroplasmy Is Rare in Plant Mitochondria Compared with Plastids despite Similar Mutation Rates.
- Author
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Khachaturyan, Marina, Santer, Mario, Reusch, Thorsten B H, and Dagan, Tal
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POPULATION genetics ,MOLECULAR evolution ,GENETIC variation ,ZOSTERA marina ,LONG-Term Evolution (Telecommunications) - Abstract
Plant cells harbor two membrane-bound organelles containing their own genetic material—plastids and mitochondria. Although the two organelles coexist and coevolve within the same plant cells, they differ in genome copy number, intracellular organization, and mode of segregation. How these attributes affect the time to fixation or, conversely, loss of neutral alleles is currently unresolved. Here, we show that mitochondria and plastids share the same mutation rate, yet plastid alleles remain in a heteroplasmic state significantly longer compared with mitochondrial alleles. By analyzing genetic variants across populations of the marine flowering plant Zostera marina and simulating organelle allele dynamics, we examine the determinants of allele segregation and allele fixation. Our results suggest that the bottlenecks on the cell population, e.g. during branching or seeding, and stratification of the meristematic tissue are important determinants of mitochondrial allele dynamics. Furthermore, we suggest that the prolonged plastid allele dynamics are due to a yet unknown active plastid partition mechanism. The dissimilarity between plastid and mitochondrial novel allele fixation at different levels of organization may manifest in differences in adaptation processes. Our study uncovers fundamental principles of organelle population genetics that are essential for further investigations of long-term evolution and molecular dating of divergence events. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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31. High heteroplasmy is associated with low mitochondrial copy number and selection against non-synonymous mutations in the snail Cepaea nemoralis.
- Author
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Davison, Angus, Chowdhury, Mehrab, Johansen, Margrethe, Uliano-Silva, Marcela, and Blaxter, Mark
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MITOCHONDRIAL DNA ,TRANSFER RNA ,BIOLOGICAL evolution ,WHOLE genome sequencing ,MITOCHONDRIA ,CYTOCHROME oxidase ,GENETIC mutation - Abstract
Molluscan mitochondrial genomes are unusual because they show wide variation in size, radical genome rearrangements and frequently show high variation (> 10%) within species. As progress in understanding this variation has been limited, we used whole genome sequencing of a six-generation matriline of the terrestrial snail Cepaea nemoralis, as well as whole genome sequences from wild-collected C. nemoralis, the sister species C. hortensis, and multiple other snail species to explore the origins of mitochondrial DNA (mtDNA) variation. The main finding is that a high rate of SNP heteroplasmy in somatic tissue was negatively correlated with mtDNA copy number in both Cepaea species. In individuals with under ten mtDNA copies per nuclear genome, more than 10% of all positions were heteroplasmic, with evidence for transmission of this heteroplasmy through the germline. Further analyses showed evidence for purifying selection acting on non-synonymous mutations, even at low frequency of the rare allele, especially in cytochrome oxidase subunit 1 and cytochrome b. The mtDNA of some individuals of Cepaea nemoralis contained a length heteroplasmy, including up to 12 direct repeat copies of tRNA-Val, with 24 copies in another snail, Candidula rugosiuscula, and repeats of tRNA-Thr in C. hortensis. These repeats likely arise due to error prone replication but are not correlated with mitochondrial copy number in C. nemoralis. Overall, the findings provide key insights into mechanisms of replication, mutation and evolution in molluscan mtDNA, and so will inform wider studies on the biology and evolution of mtDNA across animal phyla. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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32. Prospective New Technologies of mtDNA Diagnosis
- Author
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Bľandová, Gabriela, Repiská, Vanda, Dhalla, Naranjan S., Series Editor, Bolli, Roberto, Editorial Board Member, Goyal, Ramesh, Editorial Board Member, Kartha, Chandrasekharan, Editorial Board Member, Kirshenbaum, Lorrie, Editorial Board Member, Makino, Naoki, Editorial Board Member, Mehta, Jawahar L. L., Editorial Board Member, Ostadal, Bohuslav, Editorial Board Member, Pierce, Grant N., Editorial Board Member, Slezak, Jan, Editorial Board Member, Varro, Andras, Editorial Board Member, Werdan, Karl, Editorial Board Member, Weglicki, William B., Editorial Board Member, Gvozdjáková, Anna, editor, and López Lluch, Guillermo, editor
- Published
- 2024
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33. Chapter 498 - Pearson Syndrome
- Author
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Thornburg, Courtney D.
- Published
- 2025
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34. Carriers of the m.3243A>G variant should not be labelled with an acronym before they have been systematically screened for multisystem disease
- Author
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Josef Finsterer
- Subjects
g%22">m.3243a>g ,maternally inherited diabetes and deafness syndrome ,mtdna ,phenotypic heterogeneity ,heteroplasmy ,Public aspects of medicine ,RA1-1270 ,Medicine (General) ,R5-920 - Abstract
No abstract available.
- Published
- 2024
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35. Deleterious heteroplasmic mitochondrial mutations are associated with an increased risk of overall and cancer-specific mortality
- Author
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Hong, Yun Soo, Battle, Stephanie L, Shi, Wen, Puiu, Daniela, Pillalamarri, Vamsee, Xie, Jiaqi, Pankratz, Nathan, Lake, Nicole J, Lek, Monkol, Rotter, Jerome I, Rich, Stephen S, Kooperberg, Charles, Reiner, Alex P, Auer, Paul L, Heard-Costa, Nancy, Liu, Chunyu, Lai, Meng, Murabito, Joanne M, Levy, Daniel, Grove, Megan L, Alonso, Alvaro, Gibbs, Richard, Dugan-Perez, Shannon, Gondek, Lukasz P, Guallar, Eliseo, and Arking, Dan E
- Subjects
Biological Sciences ,Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Genetics ,Human Genome ,Cancer ,Hematology ,2.1 Biological and endogenous factors ,Good Health and Well Being ,Humans ,Mitochondria ,DNA ,Mitochondrial ,Heteroplasmy ,Leukemia ,Mutation - Abstract
Mitochondria carry their own circular genome and disruption of the mitochondrial genome is associated with various aging-related diseases. Unlike the nuclear genome, mitochondrial DNA (mtDNA) can be present at 1000 s to 10,000 s copies in somatic cells and variants may exist in a state of heteroplasmy, where only a fraction of the DNA molecules harbors a particular variant. We quantify mtDNA heteroplasmy in 194,871 participants in the UK Biobank and find that heteroplasmy is associated with a 1.5-fold increased risk of all-cause mortality. Additionally, we functionally characterize mtDNA single nucleotide variants (SNVs) using a constraint-based score, mitochondrial local constraint score sum (MSS) and find it associated with all-cause mortality, and with the prevalence and incidence of cancer and cancer-related mortality, particularly leukemia. These results indicate that mitochondria may have a functional role in certain cancers, and mitochondrial heteroplasmic SNVs may serve as a prognostic marker for cancer, especially for leukemia.
- Published
- 2023
36. Clinical Characteristics of Diabetes in People with Mitochondrial DNA 3243A>G Mutation in Korea
- Author
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Eun Hoo Rho, Sang Ik Baek, Heerah Lee, Moon-Woo Seong, Jong-Hee Chae, Kyong Soo Park, and Soo Heon Kwak
- Subjects
diabetes mellitus ,genetic diseases, inborn ,heteroplasmy ,maternal inheritance ,mitochondrial diseases ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Maternally inherited diabetes and deafness (MIDD) is a rare mitochondrial disorder primarily resulting from m.3243A>G mutation. The clinical characteristics of MIDD exhibit significant heterogeneity. Our study aims to delineate these characteristics and determine the potential correlation with m.3243A>G heteroplasmy levels. This retrospective, descriptive study encompassed patients with confirmed m.3243A>G mutation and diabetes mellitus at Seoul National University Hospital. Our cohort comprises 40 patients with MIDD, with a mean age at study enrollment of 33.3±12.9 years and an average % of heteroplasmy of 30.0%±14.6% in the peripheral blood. The most prevalent comorbidity was hearing loss (90%), followed by albuminuria (61%), seizure (38%), and stroke (33%). We observed a significant negative correlation between % of heteroplasmy and age at diabetes diagnosis. These clinical features can aid in the suspicion of MIDD and further consideration of genetic testing for m.3243A>G mutation.
- Published
- 2024
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37. Mitochondrial variants of complex I genes associated with leprosy clinical subtypes
- Author
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Felipe Gouvea de Souza, Caio S. Silva, Gilderlanio S. de Araújo, Mayara N. Santana-da-Silva, Angélica Rita Gobbo, Moisés Batista da Silva, Pablo Pinto, Patrícia Fagundes da Costa, Claudio Guedes Salgado, Ândrea Ribeiro-dos-Santos, and Giovanna C. Cavalcante
- Subjects
Leprosy ,Mitochondria ,mtDNA ,Complex I ,Heteroplasmy ,Medicine ,Science - Abstract
Abstract Leprosy is a chronic bacterial infection mainly caused by Mycobacterium leprae that primarily affects skin and peripheral nerves. Due to its ability to absorb carbon from the host cell, the bacillus became dependent on energy production, mainly through oxidative phosphorylation. In fact, variations in genes of Complex I of oxidative phosphorylation encoded by mtDNA have been associated with several diseases in humans, including bacterial infections, which are possible influencers in the host response to leprosy. Here, we investigated the presence of variants in the mtDNA genes encoding Complex I regarding leprosy, as well as the analysis of their pathogenicity in the studied cohort. We found an association of 74 mitochondrial variants with either of the polar forms, Pole T (Borderline Tuberculoid) or Pole L (Borderline Lepromatous and Lepromatous) of leprosy. Notably, six variants were exclusively found in both clinical poles of leprosy, including m.4158A>G and m.4248T>C in MT-ND1, m.13650C>A, m.13674T>C, m.12705C>T and m.13263A>G in MT-ND5, of which there are no previous reports in the global literature. Our observations reveal a substantial number of mutations among different groups of leprosy, highlighting a diverse range of consequences associated with mutations in genes across these groups. Furthermore, we suggest that the six specific variants exclusively identified in the case group could potentially play a crucial role in leprosy susceptibility and its clinical differentiation. These variants are believed to contribute to the instability and dysregulation of oxidative phosphorylation during the infection, further emphasizing their significance.
- Published
- 2024
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38. Numerous insertions of mitochondrial DNA in the genome of the northern mole vole, Ellobius talpinus
- Author
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Kuprina, Kristina, Smorkatcheva, Antonina, Rudyk, Anna, and Galkina, Svetlana
- Published
- 2024
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39. Mitochondrial DNA: Inherent Complexities Relevant to Genetic Analyses.
- Author
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Ferreira, Tomas and Rodriguez, Santiago
- Subjects
- *
MITOCHONDRIAL DNA , *GENETIC techniques , *DISEASE susceptibility , *POPULATION genetics , *GENOME-wide association studies - Abstract
Mitochondrial DNA (mtDNA) exhibits distinct characteristics distinguishing it from the nuclear genome, necessitating specific analytical methods in genetic studies. This comprehensive review explores the complex role of mtDNA in a variety of genetic studies, including genome-wide, epigenome-wide, and phenome-wide association studies, with a focus on its implications for human traits and diseases. Here, we discuss the structure and gene-encoding properties of mtDNA, along with the influence of environmental factors and epigenetic modifications on its function and variability. Particularly significant are the challenges posed by mtDNA's high mutation rate, heteroplasmy, and copy number variations, and their impact on disease susceptibility and population genetic analyses. The review also highlights recent advances in methodological approaches that enhance our understanding of mtDNA associations, advocating for refined genetic research techniques that accommodate its complexities. By providing a comprehensive overview of the intricacies of mtDNA, this paper underscores the need for an integrated approach to genetic studies that considers the unique properties of mitochondrial genetics. Our findings aim to inform future research and encourage the development of innovative methodologies to better interpret the broad implications of mtDNA in human health and disease. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
40. Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue.
- Author
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Cox, Sharon Natasha, Lo Giudice, Claudio, Lavecchia, Anna, Poeta, Maria Luana, Chiara, Matteo, Picardi, Ernesto, and Pesole, Graziano
- Subjects
- *
MITOCHONDRIAL DNA , *MOTOR neuron diseases , *AMYOTROPHIC lateral sclerosis , *NUCLEAR DNA , *SPINAL cord , *MITOCHONDRIA , *MOTOR neurons , *GENES - Abstract
Amyotrophic Lateral Sclerosis (ALS) is a progressive disease with prevalent mitochondrial dysfunctions affecting both upper and lower motor neurons in the motor cortex, brainstem, and spinal cord. Despite mitochondria having their own genome (mtDNA), in humans, most mitochondrial genes are encoded by the nuclear genome (nDNA). Our study aimed to simultaneously screen for nDNA and mtDNA genomes to assess for specific variant enrichment in ALS compared to control tissues. Here, we analysed whole exome (WES) and whole genome (WGS) sequencing data from spinal cord tissues, respectively, of 6 and 12 human donors. A total of 31,257 and 301,241 variants in nuclear-encoded mitochondrial genes were identified from WES and WGS, respectively, while mtDNA reads accounted for 73 and 332 variants. Despite technical differences, both datasets consistently revealed a specific enrichment of variants in the mitochondrial Control Region (CR) and in several of these genes directly associated with mitochondrial dynamics or with Sirtuin pathway genes within ALS tissues. Overall, our data support the hypothesis of a variant burden in specific genes, highlighting potential actionable targets for therapeutic interventions in ALS. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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41. Friend turned foe: selfish behavior of a spontaneously arising mitochondrial deletion in an experimentally evolved Caenorhabditis elegans population.
- Author
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Sequeira, Abigail N, O'Keefe, Ian P, Katju, Vaishali, and Bergthorsson, Ulfar
- Subjects
- *
MITOCHONDRIAL DNA , *CAENORHABDITIS elegans , *MITOCHONDRIA , *BIOLOGICAL fitness , *GENOMES - Abstract
Selfish mitochondrial DNA (mtDNA) mutations are variants that can proliferate within cells and enjoy a replication or transmission bias without fitness benefits for the host. mtDNA deletions in Caenorhabditis elegans can reach high heteroplasmic frequencies despite significantly reducing fitness, illustrating how new mtDNA variants can give rise to genetic conflict between different levels of selection and between the nuclear and mitochondrial genomes. During a mutation accumulation experiment in C. elegans , a 1,034-bp deletion originated spontaneously and reached an 81.7% frequency within an experimental evolution line. This heteroplasmic mtDNA deletion, designated as meuDf1 , eliminated portions of 2 protein-coding genes (coxIII and nd4) and tRNA- thr in entirety. mtDNA copy number in meuDf1 heteroplasmic individuals was 35% higher than in individuals with wild-type mitochondria. After backcrossing into a common genetic background, the meuDf1 mitotype was associated with reduction in several fitness traits and independent competition experiments found a 40% reduction in composite fitness. Experiments that relaxed individual selection by single individual bottlenecks demonstrated that the deletion-bearing mtDNA possessed a strong transmission bias, thereby qualifying it as a novel selfish mitotype. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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42. Chloroplast transformation in new cultivars of tomato through particle bombardment.
- Author
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Tanwar, Neha, Mahto, Binod K., Rookes, James E., Cahill, David M., Bansal, Kailash C., and Lenka, Sangram K.
- Subjects
- *
TOMATOES , *COLLISIONS (Nuclear physics) , *CULTIVARS , *SYNTHETIC genes , *GENETIC transformation , *RESEARCH personnel , *CHLOROPLAST membranes , *DEAD - Abstract
A protocol has been established for genetic transformation of the chloroplasts in two new cultivars of tomato (Solanum lycopersicum L.) grown in India and Australia: Pusa Ruby and Yellow Currant. Tomato cv. Green Pineapple was also used as a control that has previously been used for establishing chloroplast transformation by other researchers. Selected tomato cultivars were finalized from ten other tested cultivars (Green Pineapple excluded) due to their high regeneration potential and better response to chloroplast transformation. This protocol was set up using a chloroplast transformation vector (pRB94) for tomatoes that is made up of a synthetic gene operon. The vector has a chimeric aadA selectable marker gene that is controlled by the rRNA operon promoter (Prrn). This makes the plant or chloroplasts resistant to spectinomycin and streptomycin. After plasmid-coated particle bombardment, leaf explants were cultured in 50 mg/L selection media. Positive explant selection from among all the dead-appearing (yellow to brown) explants was found to be the major hurdle in the study. Even though this study was able to find plastid transformants in heteroplasmic conditions, it also found important parameters and changes that could speed up the process of chloroplast transformation in tomatoes, resulting in homoplasmic plastid-transformed plants. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
43. Mitochondrial variants of complex I genes associated with leprosy clinical subtypes.
- Author
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de Souza, Felipe Gouvea, Silva, Caio S., de Araújo, Gilderlanio S., Santana-da-Silva, Mayara N., Gobbo, Angélica Rita, da Silva, Moisés Batista, Pinto, Pablo, da Costa, Patrícia Fagundes, Salgado, Claudio Guedes, Ribeiro-dos-Santos, Ândrea, and Cavalcante, Giovanna C.
- Subjects
HANSEN'S disease ,MYCOBACTERIUM leprae ,BACTERIAL diseases ,OXIDATIVE phosphorylation ,MITOCHONDRIA - Abstract
Leprosy is a chronic bacterial infection mainly caused by Mycobacterium leprae that primarily affects skin and peripheral nerves. Due to its ability to absorb carbon from the host cell, the bacillus became dependent on energy production, mainly through oxidative phosphorylation. In fact, variations in genes of Complex I of oxidative phosphorylation encoded by mtDNA have been associated with several diseases in humans, including bacterial infections, which are possible influencers in the host response to leprosy. Here, we investigated the presence of variants in the mtDNA genes encoding Complex I regarding leprosy, as well as the analysis of their pathogenicity in the studied cohort. We found an association of 74 mitochondrial variants with either of the polar forms, Pole T (Borderline Tuberculoid) or Pole L (Borderline Lepromatous and Lepromatous) of leprosy. Notably, six variants were exclusively found in both clinical poles of leprosy, including m.4158A>G and m.4248T>C in MT-ND1, m.13650C>A, m.13674T>C, m.12705C>T and m.13263A>G in MT-ND5, of which there are no previous reports in the global literature. Our observations reveal a substantial number of mutations among different groups of leprosy, highlighting a diverse range of consequences associated with mutations in genes across these groups. Furthermore, we suggest that the six specific variants exclusively identified in the case group could potentially play a crucial role in leprosy susceptibility and its clinical differentiation. These variants are believed to contribute to the instability and dysregulation of oxidative phosphorylation during the infection, further emphasizing their significance. [ABSTRACT FROM AUTHOR]
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- 2024
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44. A retrospective cohort study evaluating pregnancy outcomes in women with MIDD.
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Sanchez-Lechuga, B., Salvucci, M., Ng, N., Kinsley, B., Hatunic, M., Kennelly, M., Edwards, J., Fleming, A., Byrne, B., and Byrne, M. M.
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PREGNANCY outcomes , *PREGNANCY , *MISCARRIAGE , *PREGNANCY complications , *DELIVERY (Obstetrics) , *PREMATURE labor , *CESAREAN section - Abstract
Aims: The most common pathogenic mitochondrial mutation associated with mitochondrial disease is m.3243A>G. Increased obstetric complications, such as spontaneous abortion, gestational diabetes (GDM), preterm delivery, and preeclampsia, have been reported in women carrying this mutation. We aimed to determine the fetal and maternal outcomes in pregnant women with mitochondrial disease. Methods: We retrospectively studied the obstetric and perinatal outcomes in 88 pregnancies of 26 women with genetically confirmed mitochondrial disease (m.3243A>G in the MTTL1 gene (n = 25); m.12258C>A in the MT-TS2 gene (n = 1)). Outcomes included pregnancy related complications, mode of delivery, gestational age at delivery and birthweight. Results: Mean heteroplasmy rate was 18%. The miscarriage rate was higher than background at 25%. 21 pregnancies (24%) were complicated by GDM; 9 pregnancies (13.6%) had a preterm delivery and 2 of them (3%) an extreme premature delivery < 32 weeks. One woman had preeclampsia and one had a postpartum hemorrhage. The caesarean section (CS) rate was 20%. For every unit increase in maternal heteroplasmy levels there was a 26% increased risk of undergoing an assisted operative vaginal delivery (OR 1.26, 95% CI 1.04–1.53, P = 0.002, Bonferroni corrected P = 0.005) and an 18% increased risk of undergoing a CS (OR 1.18, 95% CI 1.01–1.39, P = 0.01, Bonferroni corrected P = 0.03) compared to a spontaneous vaginal delivery. There was a statistical significant correlation between maternal and offspring heteroplasmy levels. Spearman correlation rho = 0.96, 95% CI 0.78–0.99, P = 0.0002. Conclusion: Women with mitochondrial disease appear to have more frequent obstetric complications including miscarriage and GDM. Pre-pregnancy diagnosis of m.3243A>G will enable the counseling of women and increase awareness of possible obstetric complications. [ABSTRACT FROM AUTHOR]
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- 2024
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45. Droplet digital polymerase chain reaction to measure heteroplasmic m.3243A>G mitochondrial mutations.
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Matsumoto, Shinya, Uchiumi, Takeshi, Noda, Nozomi, Ueyanagi, Yasushi, Hotta, Taeko, and Kang, Dongchon
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RESEARCH funding , *POLYMERASE chain reaction , *GENETIC variation , *MITOCHONDRIAL pathology , *GENETIC mutation , *COMPARATIVE studies - Abstract
Objective Different mitochondrial DNA genotypes can coexist in a cell population as well as in a single cell, a condition known as heteroplasmy. Here, we accurately determined the heteroplasmy levels of the m.3243A>G mutation, which is the most frequently identified mutation in patients with mitochondrial diseases, using droplet digital polymerase chain reaction (ddPCR). Methods The m.3243A>G heteroplasmy levels in artificial heteroplasmy controls mixed with various proportions of wild-type and mutant plasmids were measured using ddPCR, PCR-restriction fragment length polymorphism, and Sanger sequencing. The m.3243A>G heteroplasmy levels in DNA, extracted from the peripheral blood of patients with suspected mitochondrial disease and healthy subjects, were determined using ddPCR. Results The accuracy of the ddPCR method was high. The lower limit of detection was 0.1%, which indicated its higher sensitivity compared with other methods. The m.3243A>G heteroplasmy levels in peripheral blood, measured using ddPCR, correlated inversely with age at the time of analysis. The m.3243A>G mutation may be overlooked in the peripheral blood-derived DNA of elderly people, as patients >60 years of age have heteroplasmy levels <10%, which is difficult to detect using methods other than the highly sensitive ddPCR. Conclusion ddPCR may be considered an accurate and sensitive method for measuring m.3243 A>G heteroplasmy levels of mitochondrial DNA. [ABSTRACT FROM AUTHOR]
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- 2024
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46. Mitochondrial DNA competition: starving out the mutant genome.
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Spinazzola, Antonella, Perez-Rodriguez, Diego, Ježek, Jan, and Holt, Ian J.
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MITOCHONDRIAL DNA , *SMALL molecules , *GENOMES , *NUTRITIONAL requirements , *MITOCHONDRIA , *RESPIRATION - Abstract
Selfish deleterious mtDNAs out-replicate wild-type molecules. Glutamine addiction imparts sensitivity of mutant mtDNA to small molecules that restrict its utilization. Targeting glutamine and glucose utilization as the 'Achilles' heel' of selfish selection sets the rationale for designing the next generation of therapeutics against mitochondrial diseases. Recent data emphasize the role of key mitochondrial metabolites in mito-nuclear signaling and epigenetic imprinting. They represent another important group of druggable targets for mitochondrial diseases. High levels of pathogenic mitochondrial DNA (mtDNA) variants lead to severe genetic diseases, and the accumulation of such mutants may also contribute to common disorders. Thus, selecting against these mutants is a major goal in mitochondrial medicine. Although mutant mtDNA can drift randomly, mounting evidence indicates that active forces play a role in the selection for and against mtDNA variants. The underlying mechanisms are beginning to be clarified, and recent studies suggest that metabolic cues, including fuel availability, contribute to shaping mtDNA heteroplasmy. In the context of pathological mtDNAs, remodeling of nutrient metabolism supports mitochondria with deleterious mtDNAs and enables them to outcompete functional variants owing to a replicative advantage. The elevated nutrient requirement represents a mutant Achilles' heel because small molecules that restrict nutrient consumption or interfere with nutrient sensing can purge cells of deleterious mtDNAs and restore mitochondrial respiration. These advances herald the dawn of a new era of small-molecule therapies to counteract pathological mtDNAs. [ABSTRACT FROM AUTHOR]
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- 2024
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47. Our current understanding of the biological impact of endometrial cancer mtDNA genome mutations and their potential use as a biomarker
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Pabitra Khadka, Carolyn K. J. Young, Ravi Sachidanandam, Laurent Brard, and Matthew J. Young
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endometrial cancer (EC) ,mitochondrial DNA (mtDNA) ,heteroplasmy ,homoplasmy ,cancer biomarker ,metabolism ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Endometrial cancer (EC) is a devastating and common disease affecting women’s health. The NCI Surveillance, Epidemiology, and End Results Program predicted that there would be >66,000 new cases in the United States and >13,000 deaths from EC in 2023, and EC is the sixth most common cancer among women worldwide. Regulation of mitochondrial metabolism plays a role in tumorigenesis. In proliferating cancer cells, mitochondria provide the necessary building blocks for biosynthesis of amino acids, lipids, nucleotides, and glucose. One mechanism causing altered mitochondrial activity is mitochondrial DNA (mtDNA) mutation. The polyploid human mtDNA genome is a circular double-stranded molecule essential to vertebrate life that harbors genes critical for oxidative phosphorylation plus mitochondrial-derived peptide genes. Cancer cells display aerobic glycolysis, known as the Warburg effect, which arises from the needs of fast-dividing cells and is characterized by increased glucose uptake and conversion of glucose to lactate. Solid tumors often contain at least one mtDNA substitution. Furthermore, it is common for cancer cells to harbor mixtures of wild-type and mutant mtDNA genotypes, known as heteroplasmy. Considering the increase in cancer cell energy demand, the presence of functionally relevant carcinogenesis-inducing or environment-adapting mtDNA mutations in cancer seems plausible. We review 279 EC tumor-specific mtDNA single nucleotide variants from 111 individuals from different studies. Many transition mutations indicative of error-prone DNA polymerase γ replication and C to U deamination events were present. We examine the spectrum of mutations and their heteroplasmy and discuss the potential biological impact of recurrent, non-synonymous, insertion, and deletion mutations. Lastly, we explore current EC treatments, exploiting cancer cell mitochondria for therapy and the prospect of using mtDNA variants as an EC biomarker.
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- 2024
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48. Heteroplasmy of Wild-Type Mitochondrial DNA Variants in Mice Causes Metabolic Heart Disease With Pulmonary Hypertension and Frailty
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Lechuga-Vieco, Ana Victoria, Latorre-Pellicer, Ana, Calvo, Enrique, Torroja, Carlos, Pellico, Juan, Acín-Pérez, Rebeca, García-Gil, María Luisa, Santos, Arnoldo, Bagwan, Navratan, Bonzon-Kulichenko, Elena, Magni, Ricardo, Benito, Marina, Justo-Méndez, Raquel, Simon, Anna Katharina, Sánchez-Cabo, Fátima, Vázquez, Jesús, Ruíz-Cabello, Jesús, and Enríquez, José Antonio
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Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Clinical Sciences ,Cardiovascular ,Genetics ,Prevention ,Heart Disease ,Aging ,2.1 Biological and endogenous factors ,Aetiology ,Adult ,Animals ,DNA ,Mitochondrial ,Frailty ,Heart Diseases ,Heteroplasmy ,Humans ,Hypertension ,Pulmonary ,Mice ,Mitochondria ,DNA ,mitochondrial ,haplotypes ,heart diseases ,heteroplasmy ,hypertension ,pulmonary ,mice ,oxidative phosphorylation ,DNA ,mitochondrial ,hypertension ,pulmonary ,Cardiorespiratory Medicine and Haematology ,Public Health and Health Services ,Cardiovascular System & Hematology ,Cardiovascular medicine and haematology ,Clinical sciences ,Sports science and exercise - Abstract
BackgroundIn most eukaryotic cells, the mitochondrial DNA (mtDNA) is transmitted uniparentally and present in multiple copies derived from the clonal expansion of maternally inherited mtDNA. All copies are therefore near-identical, or homoplasmic. The presence of >1 mtDNA variant in the same cytoplasm can arise naturally or result from new medical technologies aimed at preventing mitochondrial genetic diseases and improving fertility. The latter is called divergent nonpathologic mtDNA heteroplasmy (DNPH). We hypothesized that DNPH is maladaptive and usually prevented by the cell.MethodsWe engineered and characterized DNPH mice throughout their lifespan using transcriptomic, metabolomic, biochemical, physiologic, and phenotyping techniques. We focused on in vivo imaging techniques for noninvasive assessment of cardiac and pulmonary energy metabolism.ResultsWe show that DNPH impairs mitochondrial function, with profound consequences in critical tissues that cannot resolve heteroplasmy, particularly cardiac and skeletal muscle. Progressive metabolic stress in these tissues leads to severe pathology in adulthood, including pulmonary hypertension and heart failure, skeletal muscle wasting, frailty, and premature death. Symptom severity is strongly modulated by the nuclear context.ConclusionsMedical interventions that may generate DNPH should address potential incompatibilities between donor and recipient mtDNA.
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- 2022
49. The Roles of Mitochondria in Human Being’s Life and Aging
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Hiroko P. Indo, Moragot Chatatikun, Ikuo Nakanishi, Ken-ichiro Matsumoto, Motoki Imai, Fumitaka Kawakami, Makoto Kubo, Hiroshi Abe, Hiroshi Ichikawa, Yoshikazu Yonei, Hisashi J. Beppu, Yukiko Minamiyama, Takuro Kanekura, Takafumi Ichikawa, Atthaphong Phongphithakchai, Lunla Udomwech, Suriyan Sukati, Nurdina Charong, Voravuth Somsak, Jitbanjong Tangpong, Sachiyo Nomura, and Hideyuki J. Majima
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mitochondria ,aging ,mitochondrial DNA ,mitochondrial DNA damage ,heteroplasmy ,Microbiology ,QR1-502 - Abstract
The universe began 13.8 billion years ago, and Earth was born 4.6 billion years ago. Early traces of life were found as soon as 4.1 billion years ago; then, ~200,000 years ago, the human being was born. The evolution of life on earth was to become individual rather than cellular life. The birth of mitochondria made this possible to be the individual life. Since then, individuals have had a limited time of life. It was 1.4 billion years ago that a bacterial cell began living inside an archaeal host cell, a form of endosymbiosis that is the development of eukaryotic cells, which contain a nucleus and other membrane-bound compartments. The bacterium started to provide its host cell with additional energy, and the interaction eventually resulted in a eukaryotic cell, with both archaeal (the host cell) and bacterial (mitochondrial) origins still having genomes. The cells survived high concentrations of oxygen producing more energy inside the cell. Further, the roles of mitochondria in human being’s life and aging will be discussed.
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- 2024
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50. Maternally inherited diabetes and deafness with a variable presentation across three generations within a pedigree, South Africa
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Herbert Makgopa, Tanja Kemp, Surita Meldau, Engela M. Honey, and Bettina Chale-Matsau
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diabetes ,mitochondrial dna ,maternally inherited diabetes and deafness ,heteroplasmy ,hearing loss. ,Public aspects of medicine ,RA1-1270 ,Medicine (General) ,R5-920 - Abstract
Introduction: Maternally inherited diabetes and deafness (MIDD) is caused by the m.3243AG pathogenic variant in maternally inherited mitochondrial DNA. Diabetes is prevalent in our setting; however, MIDD is rarely diagnosed. This study, undertaken in Pretoria, South Africa, highlights the variable presentation of MIDD in different patients within the same family. Case presentation: A 45-year-old man (proband) with hearing impairment was referred to the endocrine unit in July 2015 due to poor glycaemic control (HbA1c = 13%). His clinical and biochemical features were in keeping with MIDD. A genetic study of accessible maternal relatives was pursued. His mother had difficulty hearing and reportedly died from an unspecified cardiovascular cause. Two sisters with diabetes and deafness died of cardiac-related conditions. One nephew had diabetes (HbA1c = 7.7%), hearing loss and tested positive for m.3243AG. A third sister tested positive for m3243AG, but aside from bilateral mild hearing loss in higher frequencies, showed no other signs of target organ damage. Her daughter developed end-stage kidney failure necessitating a transplant, while her son had no biochemical abnormalities and was negative for m.3243AG. Management and outcome: A multidisciplinary team managed and screened for complications of the patient and his maternal relatives. Proband died prior to genetic testing. Conclusion: Most MIDD patients initially present with symptoms of diabetes only, and it is probable that many cases remain undiagnosed. A high index of suspicion is necessary when encountering a family history of both diabetes and impaired hearing, and screening should be offered to the patient’s maternal relatives. What the study adds: This study demonstrates the importance of proper assessment when evaluating a patient with diabetes and a family history of hearing loss.
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- 2024
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