1. Molecular detection of Enteropathogens from diarrheic stool of HIV positive patients in Gondar, Ethiopia.
- Author
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Seid L, Stokes W, Bayih AG, Getie S, Abere A, Tesfa H, and Pillai DR
- Subjects
- AIDS-Related Opportunistic Infections microbiology, AIDS-Related Opportunistic Infections parasitology, AIDS-Related Opportunistic Infections virology, Adolescent, Adult, Antiretroviral Therapy, Highly Active adverse effects, Bacteria classification, Bacteria genetics, Bacteria isolation & purification, CD4 Lymphocyte Count, Child, Cross-Sectional Studies, Diagnostic Tests, Routine methods, Diarrhea microbiology, Diarrhea parasitology, Diarrhea virology, Escherichia coli genetics, Escherichia coli isolation & purification, Ethiopia, Female, HIV, HIV Enteropathy diagnosis, HIV Enteropathy microbiology, HIV Enteropathy parasitology, HIV Enteropathy virology, HIV Seropositivity microbiology, HIV Seropositivity parasitology, HIV Seropositivity virology, Humans, Male, Middle Aged, Norovirus genetics, Norovirus isolation & purification, Risk Factors, Shigella genetics, Shigella isolation & purification, Young Adult, AIDS-Related Opportunistic Infections diagnosis, Diarrhea diagnosis, Feces microbiology, Feces parasitology, Feces virology, HIV Seropositivity complications, Molecular Diagnostic Techniques methods
- Abstract
Background: Infectious diarrhea is a common problem in the developing world, especially among people living with HIV/AIDS. Traditional diagnostic methods such as stool culture and microscopic examination are limited by resources and poor sensitivity. The use of molecular diagnostics for enteropathogen detection in this region of sub-Saharan Africa has not been fully explored. We sought to identify risk factors and characterize enteropathogens from diarrheic stools of HIV-positive patients in Gondar, Ethiopia using multiplex molecular panels targeting key infectious agents., Methods: A cross-sectional study of 100 stool samples was performed. Samples were collected consecutively from HIV- positive patients presenting with diarrhea at University of Gondar Hospital clinic, a major center in NW Ethiopia. Genomic DNA was extracted from stool and processed using a multiplex molecular panel Allplex™ [Seegene, Canada]. Correlations between patient characteristics, symptoms, public health risk factors, and enteropathogen type (s) were studied. Eighty-six samples were successfully analyzed by molecular methods., Results: The mean age was 35 with 43% male. Eighty percent lived in an urban area, 18% had access to well water only, and 81% practiced proper hand hygiene. The majority of patients (72%) were receiving HAART with a median CD4 cell count of 362/μL. Multiple pathogens were detected in 94% of specimens, with an average of 5 enteropathogens per sample. Common bacteria, viruses, and parasites detected were Shigella spp./enteroinvasive E. coli (80%), enterotoxigenic E. coli (73%), Norovirus (16%) and B. hominis (62%). CD4 cell count < 500/ μL was associated with the presence of viruses (p = 0.004) and the absence of STEC (p = 0.010). The use of HAART or CD4 levels was not associated with the number of enteropathogens detected., Conclusions: Diarrheic stool from HIV-positive outpatients in Gondar, Ethiopia had on average 5 enteropathogens present in their stool. Shigellaspp./enteroinvasive E. coli and enterotoxigenic E. coli are the major pathogens, not dissimilar to immunocompetent individuals in low income countries.
- Published
- 2018
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