1. A short HLA-DRA isoform binds the HLA-DR2 heterodimer on the outer domain of the peptide-binding site.
- Author
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Shams, Hengameh, Hollenbach, Jill A, Matsunaga, Atsuko, Mofrad, Mohammad RK, Oksenberg, Jorge R, and Didonna, Alessandro
- Subjects
Humans ,Peptides ,Protein Isoforms ,HLA-DR2 Antigen ,Binding Sites ,HLA-DR alpha-Chains ,Antigen presentation ,Molecular dynamics ,Protein-protein binding ,Structural modulation ,Underpinning research ,1.1 Normal biological development and functioning ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Generic health relevance ,Biochemistry and Cell Biology ,Biochemistry & Molecular Biology - Abstract
The human leukocyte antigen (HLA) locus encodes a large group of proteins governing adaptive and innate immune responses. Among them, HLA class II proteins form α/β heterodimers on the membrane of professional antigen-presenting cells (APCs), where they display both, self and pathogen-derived exogenous antigens to CD4+ T lymphocytes. We have previously shown that a shorter HLA-DRA isoform (sHLA-DRA) lacking 25 amino acids can be presented onto the cell membrane via binding to canonical HLA-DR2 heterodimers. Here, we employed atomistic molecular dynamics simulations to decipher the binding position of sHLA-DRA and its structural impact on functional regions of the HLA-DR2 molecule. We show that a loop region exposed only in the short isoform (residues R69 to G83) is responsible for binding to the outer domain of the HLA-DR2 peptide-binding site, and experimentally validated the critical role of F76 in mediating such interaction. Additionally, sHLA-DRA allosterically modifies the peptide-binding pocket conformation. In summary, this study unravels key molecular mechanisms underlying sHLA-DRA function, providing important insights into the role of full-length proteins in structural modulation of HLA class II receptors.
- Published
- 2022