36 results on '"Hardy GESJ"'
Search Results
2. Fungal Planet description sheets: 716-784
- Author
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Ciències Mèdiques Bàsiques, Universitat Rovira i Virgili, Crous PW, Wingfield MJ, Burgess TI, Hardy GESJ, Gené J, Guarro J, Baseia IG, García D, Gusmão LFP, Souza-Motta CM, Thangavel R, Adam?ík S, Barili A, Barnes CW, Bezerra JDP, Bordallo JJ, Cano-Lira JF, de Oliveira RJV, Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín MP, Moreau PA, Morte A, Ordoñez ME, Rodríguez A, Stchigel AM, Vizzini A, Abdollahzadeh J, Abreu VP, Adam?íková K, Albuquerque GMR, Alexandrova AV, Álvarez Duarte E, Armstrong-Cho C, Banniza S, Barbosa RN, Bellanger JM, Bezerra JL, Cabral TS, Cabo? M, Caicedo E, Cantillo T, Carnegie AJ, Carmo LT, Castañeda-Ruiz RF, Clement CR, ?moková A, Conceição LB, Cruz RHSF, Damm U, da Silva BDB, da Silva GA, da Silva RMF, de A Santiago ALCM, de Oliveira LF, de Souza CAF, Déniel F, Dima B, Dong G, Edwards J, Félix CR, Fournier J, Gibertoni TB, Hosaka K, Iturriaga T, Jadan M, Jany JL, Jurjevi? Ž, Kola?ík M, Kušan I, Landell MF, Leite Cordeiro TR, Lima DX, Loizides M, Luo S, Machado AR, Madrid H, Magalhães OMC, Marinho P, Mato?ec N, Meši? A, Miller AN, Morozova OV, Neves RP, Nonaka K, Nováková A, Oberlies NH, Oliveira-Filho JRC, Oliveira TGL, Papp V, Pereira OL, Perrone G, Peterson SW, Pham THG, Raja HA, Raudabaugh DB, ?ehulka J, Rodríguez-Andrade E, Saba M, Schauflerová A, Shivas RG, Simonini G, Siqueira JPZ, Sousa JO, Stajsic V, Svetasheva T, Tan YP, Tkal?ec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Marques DA, Wong PTW, Xavier de Lima V, Groenewald JZ, Ciències Mèdiques Bàsiques, Universitat Rovira i Virgili, and Crous PW, Wingfield MJ, Burgess TI, Hardy GESJ, Gené J, Guarro J, Baseia IG, García D, Gusmão LFP, Souza-Motta CM, Thangavel R, Adam?ík S, Barili A, Barnes CW, Bezerra JDP, Bordallo JJ, Cano-Lira JF, de Oliveira RJV, Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín MP, Moreau PA, Morte A, Ordoñez ME, Rodríguez A, Stchigel AM, Vizzini A, Abdollahzadeh J, Abreu VP, Adam?íková K, Albuquerque GMR, Alexandrova AV, Álvarez Duarte E, Armstrong-Cho C, Banniza S, Barbosa RN, Bellanger JM, Bezerra JL, Cabral TS, Cabo? M, Caicedo E, Cantillo T, Carnegie AJ, Carmo LT, Castañeda-Ruiz RF, Clement CR, ?moková A, Conceição LB, Cruz RHSF, Damm U, da Silva BDB, da Silva GA, da Silva RMF, de A Santiago ALCM, de Oliveira LF, de Souza CAF, Déniel F, Dima B, Dong G, Edwards J, Félix CR, Fournier J, Gibertoni TB, Hosaka K, Iturriaga T, Jadan M, Jany JL, Jurjevi? Ž, Kola?ík M, Kušan I, Landell MF, Leite Cordeiro TR, Lima DX, Loizides M, Luo S, Machado AR, Madrid H, Magalhães OMC, Marinho P, Mato?ec N, Meši? A, Miller AN, Morozova OV, Neves RP, Nonaka K, Nováková A, Oberlies NH, Oliveira-Filho JRC, Oliveira TGL, Papp V, Pereira OL, Perrone G, Peterson SW, Pham THG, Raja HA, Raudabaugh DB, ?ehulka J, Rodríguez-Andrade E, Saba M, Schauflerová A, Shivas RG, Simonini G, Siqueira JPZ, Sousa JO, Stajsic V, Svetasheva T, Tan YP, Tkal?ec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Marques DA, Wong PTW, Xavier de Lima V, Groenewald JZ
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia, Chaetopsina eucalypti on Eucalyptus leaf litter, Colletotrichum cobbittiense from Cordyline stricta × C. australis hybrid, Cyanodermella banksiae on Banksia ericifolia subsp. macrantha, Discosia macrozamiae on Macrozamia miquelii, Elsinoë banksiigena on Banksia marginata, Elsinoë elaeocarpi on Elaeocarpus sp., Elsinoë leucopogonis on Leucopogon sp., Helminthosporium livistonae on Livistona australis, Idriellomyces eucalypti (incl. Idriellomyces gen. nov.) on Eucalyptus obliqua, Lareunionomyces eucalypti on Eucalyptus sp., Myrotheciomyces corymbiae (incl. Myrotheciomyces gen. nov., Myrotheciomycetaceae fam. nov.), Neolauriomyces eucalypti (incl. Neolauriomyces gen. nov., Neolauriomycetaceae fam. nov.) on Eucalyptus sp., Nullicamyces eucalypti (incl. Nullicamyces gen. nov.) on Eucalyptus leaf litter, Oidiodendron eucalypti on Eucalyptus maidenii, Paracladophialophora cyperacearum (incl. Paracladophialophoraceae fam. nov.) and Periconia cyperacearum on leaves of Cyperaceae, Porodiplodia livistonae (incl. Porodiplodia gen. nov., Porodiplodiaceae fam. nov.) on Livistona australis, Sporidesmium melaleucae (incl. Sporidesmiales ord. nov.) on Melaleuca sp., Teratosphaeria sieberi on Eucalyptus sieberi, Thecaphora australiensis in capsules of a variant of Oxalis exilis.Brazil, Aspergillus serratalhadensis from soil, Diaporthe pseudoinconspicua from Poincianella pyramidalis, Fomitiporella pertenuis on dead wood, Geastrum magnosporum on soil, Marquesius aquaticus (incl. Marquesius gen. nov.) from submerged decaying twig and leaves of unidentified plant, Mastigosporella pigmentata from leaves of Qualea parviflorae, Mucor souzae from soil, Mycocalia aquaphila on decaying wood f
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- 2018
3. Fungal Planet description sheets: 558-624
- Author
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Crous, PW, Wingfield, MJ, Burgess, TI, Hardy, GESJ, Barber, PA, Alvarado, P, Barnes, CW, Buchanan, PK, Heykoop, M, Moreno, G, Thangavel, R, van der Spuy, S, Barili, A, Barrett, S, Cacciola, SO, Cano-Lira, JF, Crane, C, Decock, C, Gibertoni, TB, Guarro, J, Guevara-Suarez, M, Hubka, V, Kolarik, M, Lira, CRS, Ordonez, ME, Padamsee, M, Ryvarden, L, Soares, AM, Stchigel, AM, Sutton, DA, Vizzini, A, Weir, BS, Acharya, K, Aloi, F, Baseia, IG, Blanchette, RA, Bordallo, JJ, Bratek, Z, Butler, T, Cano-Canals, J, Carlavilla, JR, Chander, J, Cheewangkoon, R, Cruz, RHSF, da Silva, M, Dutta, AK, Ercole, E, Escobio, V, Esteve-Raventos, F, Flores, JA, Gene, J, Gois, JS, Haines, L, Held, BW, Jung, MH, Hosaka, K, Jung, T, Jurjevic, Z, Kautman, V, Kautmanova, I, Kiyashko, AA, Kozanek, M, Kubatova, A, Lafourcade, M, La Spada, F, Latha, KPD, Madrid, H, Malysheva, EF, Manimohan, P, Manjon, JL, Martin, MP, Mata, M, Merenyi, Z, Morte, A, Nagy, I, Normand, A-C, Paloi, S, Pattison, N, Pawlowska, J, Pereira, OL, Petterson, ME, Picillo, B, Raj, KNA, Roberts, A, Rodriguez, A, Rodriguez-Campo, FJ, Romanski, M, Ruszkiewicz-Michalska, M, Scanu, B, Schena, L, Semelbauer, M, Sharma, R, Shouche, YS, Silva, V, Staniaszek-Kik, M, Stielow, JB, Tapia, C, Taylor, PWJ, Toome-Heller, M, Vabeikhokhei, JMC, van Diepeningen, AD, Van Hoa, N, Van Tri, M, Wiederhold, NP, Wrzosek, M, Zothanzama, J, Groenewald, JZ, Crous, PW, Wingfield, MJ, Burgess, TI, Hardy, GESJ, Barber, PA, Alvarado, P, Barnes, CW, Buchanan, PK, Heykoop, M, Moreno, G, Thangavel, R, van der Spuy, S, Barili, A, Barrett, S, Cacciola, SO, Cano-Lira, JF, Crane, C, Decock, C, Gibertoni, TB, Guarro, J, Guevara-Suarez, M, Hubka, V, Kolarik, M, Lira, CRS, Ordonez, ME, Padamsee, M, Ryvarden, L, Soares, AM, Stchigel, AM, Sutton, DA, Vizzini, A, Weir, BS, Acharya, K, Aloi, F, Baseia, IG, Blanchette, RA, Bordallo, JJ, Bratek, Z, Butler, T, Cano-Canals, J, Carlavilla, JR, Chander, J, Cheewangkoon, R, Cruz, RHSF, da Silva, M, Dutta, AK, Ercole, E, Escobio, V, Esteve-Raventos, F, Flores, JA, Gene, J, Gois, JS, Haines, L, Held, BW, Jung, MH, Hosaka, K, Jung, T, Jurjevic, Z, Kautman, V, Kautmanova, I, Kiyashko, AA, Kozanek, M, Kubatova, A, Lafourcade, M, La Spada, F, Latha, KPD, Madrid, H, Malysheva, EF, Manimohan, P, Manjon, JL, Martin, MP, Mata, M, Merenyi, Z, Morte, A, Nagy, I, Normand, A-C, Paloi, S, Pattison, N, Pawlowska, J, Pereira, OL, Petterson, ME, Picillo, B, Raj, KNA, Roberts, A, Rodriguez, A, Rodriguez-Campo, FJ, Romanski, M, Ruszkiewicz-Michalska, M, Scanu, B, Schena, L, Semelbauer, M, Sharma, R, Shouche, YS, Silva, V, Staniaszek-Kik, M, Stielow, JB, Tapia, C, Taylor, PWJ, Toome-Heller, M, Vabeikhokhei, JMC, van Diepeningen, AD, Van Hoa, N, Van Tri, M, Wiederhold, NP, Wrzosek, M, Zothanzama, J, and Groenewald, JZ
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia: Banksiophoma australiensis (incl. Banksiophoma gen. nov.) on Banksia coccinea, Davidiellomycesaustraliensis (incl. Davidiellomyces gen. nov.) on Cyperaceae, Didymocyrtis banksiae on Banksia sessilis var. cygnorum, Disculoides calophyllae on Corymbia calophylla, Harknessia banksiae on Banksia sessilis, Harknessia banksiae-repens on Banksia repens, Harknessia banksiigena on Banksia sessilis var. cygnorum, Harknessia communis on Podocarpus sp., Harknessia platyphyllae on Eucalyptus platyphylla, Myrtacremonium eucalypti (incl. Myrtacremonium gen. nov.) on Eucalyptus globulus, Myrtapenidiella balenae on Eucalyptus sp., Myrtapenidiella eucalyptigena on Eucalyptus sp., Myrtapenidiella pleurocarpae on Eucalyptuspleurocarpa, Paraconiothyrium hakeae on Hakea sp., Paraphaeosphaeria xanthorrhoeae on Xanthorrhoea sp., Parateratosphaeria stirlingiae on Stirlingia sp., Perthomyces podocarpi (incl. Perthomyces gen. nov.) on Podocarpus sp., Readeriella ellipsoidea on Eucalyptus sp., Rosellinia australiensis on Banksia grandis, Tiarosporella corymbiae on Corymbia calophylla, Verrucoconiothyriumeucalyptigenum on Eucalyptus sp., Zasmidium commune on Xanthorrhoea sp., and Zasmidium podocarpi on Podocarpus sp. Brazil: Cyathus aurantogriseocarpus on decaying wood, Perenniporia brasiliensis on decayed wood, Perenniporia paraguyanensis on decayed wood, and Pseudocercospora leandrae-fragilis on Leandrafragilis.Chile: Phialocephala cladophialophoroides on human toe nail. Costa Rica: Psathyrella striatoannulata from soil. Czech Republic: Myotisia cremea (incl. Myotisia gen. nov.) on bat droppings. Ecuador: Humidicutis dictiocephala from soil, Hygrocybe macrosiparia from soil, Hygrocybe sangayensis from soil, and Polycephalomyces onorei on stem of Etlingera sp. France: Westerdykella centenaria from soil. Hungary: Tuber magentipunctatum from soil. India: Ganoderma mizoramense on decaying wo
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- 2017
4. Fungal Planet description sheets: 400-468
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Crous, PW, Wingfield, MJ, Richardson, DM, Le Roux, JJ, Strasberg, D, Edwards, J, Roets, F, Hubka, V, Taylor, PWJ, Heykoop, M, Martin, MP, Moreno, G, Sutton, DA, Wiederhold, NP, Barnes, CW, Carlavilla, JR, Gene, J, Giraldo, A, Guarnaccia, V, Guarro, J, Hernandez-Restrepo, M, Kolarik, M, Manjon, JL, Pascoe, IG, Popov, ES, Sandoval-Denis, M, Woudenberg, JHC, Acharya, K, Alexandrova, AV, Alvarado, P, Barbosa, RN, Baseia, IG, Blanchette, RA, Boekhout, T, Burgess, TI, Cano-Lira, JF, Cmokova, A, Dimitrov, RA, Dyakov, MY, Duenas, M, Dutta, AK, Esteve-Raventos, F, Fedosova, AG, Fournier, J, Gamboa, P, Gouliamova, DE, Grebenc, T, Groenewald, M, Hanse, B, Hardy, GESJ, Held, BW, Jurjevic, Z, Kaewgrajang, T, Latha, KPD, Lombard, L, Luangsa-ard, JJ, Lyskova, P, Mallatova, N, Manimohan, P, Miller, AN, Mirabolfathy, M, Morozova, OV, Obodai, M, Oliveira, NT, Ordonez, ME, Otto, EC, Paloi, S, Peterson, SW, Phosri, C, Roux, J, Salazar, WA, Sanchez, A, Sarria, GA, Shin, H-D, Silva, BDB, Silva, GA, Smith, MT, Souza-Motta, CM, Stchigel, AM, Stoilova-Disheva, MM, Sulzbacher, MA, Telleria, MT, Toapanta, C, Traba, JM, Valenzuela-Lopez, N, Watling, R, Groenewald, JZ, Crous, PW, Wingfield, MJ, Richardson, DM, Le Roux, JJ, Strasberg, D, Edwards, J, Roets, F, Hubka, V, Taylor, PWJ, Heykoop, M, Martin, MP, Moreno, G, Sutton, DA, Wiederhold, NP, Barnes, CW, Carlavilla, JR, Gene, J, Giraldo, A, Guarnaccia, V, Guarro, J, Hernandez-Restrepo, M, Kolarik, M, Manjon, JL, Pascoe, IG, Popov, ES, Sandoval-Denis, M, Woudenberg, JHC, Acharya, K, Alexandrova, AV, Alvarado, P, Barbosa, RN, Baseia, IG, Blanchette, RA, Boekhout, T, Burgess, TI, Cano-Lira, JF, Cmokova, A, Dimitrov, RA, Dyakov, MY, Duenas, M, Dutta, AK, Esteve-Raventos, F, Fedosova, AG, Fournier, J, Gamboa, P, Gouliamova, DE, Grebenc, T, Groenewald, M, Hanse, B, Hardy, GESJ, Held, BW, Jurjevic, Z, Kaewgrajang, T, Latha, KPD, Lombard, L, Luangsa-ard, JJ, Lyskova, P, Mallatova, N, Manimohan, P, Miller, AN, Mirabolfathy, M, Morozova, OV, Obodai, M, Oliveira, NT, Ordonez, ME, Otto, EC, Paloi, S, Peterson, SW, Phosri, C, Roux, J, Salazar, WA, Sanchez, A, Sarria, GA, Shin, H-D, Silva, BDB, Silva, GA, Smith, MT, Souza-Motta, CM, Stchigel, AM, Stoilova-Disheva, MM, Sulzbacher, MA, Telleria, MT, Toapanta, C, Traba, JM, Valenzuela-Lopez, N, Watling, R, and Groenewald, JZ
- Abstract
Novel species of fungi described in the present study include the following from Australia: Vermiculariopsiella eucalypti, Mulderomyces natalis (incl. Mulderomyces gen. nov.), Fusicladium paraamoenum, Neotrimmatostroma paraexcentricum, and Pseudophloeospora eucalyptorum on leaves of Eucalyptus spp., Anungitea grevilleae (on leaves of Grevillea sp.), Pyrenochaeta acaciae (on leaves of Acacia sp.), and Brunneocarpos banksiae (incl. Brunneocarpos gen. nov.) on cones of Banksia attenuata. Novel foliicolous taxa from South Africa include Neosulcatispora strelitziae (on Strelitzia nicolai), Colletotrichum ledebouriae (on Ledebouria floridunda), Cylindrosympodioides brabejum (incl. Cylindrosympodioides gen. nov.) on Brabejum stellatifolium, Sclerostagonospora ericae (on Erica sp.), Setophoma cyperi (on Cyperus sphaerocephala), and Phaeosphaeria breonadiae (on Breonadia microcephala). Novelties described from Robben Island (South Africa) include Wojnowiciella cissampeli and Diaporthe cissampeli (both on Cissampelos capensis), Phaeotheca salicorniae (on Salicornia meyeriana), Paracylindrocarpon aloicola (incl. Paracylindrocarpon gen. nov.) on Aloe sp., and Libertasomyces myopori (incl. Libertasomyces gen. nov.) on Myoporum serratum. Several novelties are recorded from La Réunion (France), namely Phaeosphaeriopsis agapanthi (on Agapanthus sp.), Roussoella solani (on Solanum mauritianum), Vermiculariopsiella acaciae (on Acacia heterophylla), Dothiorella acacicola (on Acacia mearnsii), Chalara clidemiae (on Clidemia hirta), Cytospora tibouchinae (on Tibouchina semidecandra), Diaporthe ocoteae (on Ocotea obtusata), Castanediella eucalypticola, Phaeophleospora eucalypticola and Fusicladium eucalypticola (on Eucalyptus robusta), Lareunionomyces syzygii (incl. Lareunionomyces gen. nov.) and Parawiesneriomyces syzygii (incl. Parawiesneriomyces gen. nov.) on leaves of Syzygium jambos. Novel taxa from the USA include Meristemomyces arctostaphylos (on Arctostaphylos patula), Ochroconis
- Published
- 2016
5. Fungal Planet description sheets: 469-557
- Author
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Crous, PW, Wingfiel, MJ, Burgess, TI, Hardy, GESJ, Crane, C, Barrett, S, Cano-Lira, JF, Le Roux, JJ, Thangavel, R, Guarro, J, Stchigel, AM, Martin, MP, Alfredo, DS, Barber, PA, Barreto, RW, Baseia, IG, Cano-Canals, J, Cheewangkoon, R, Ferreira, RJ, Gene, J, Lechat, C, Moreno, G, Roets, F, Shivas, RG, Sousa, JO, Tan, YP, Wiederhold, NP, Abell, SE, Accioly, T, Albizu, JL, Alves, JL, Antoniolli, ZI, Aplin, N, Araujo, J, Arzanlou, M, Bezerra, JDP, Bouchara, J-P, Carlavilla, JR, Castillo, A, Castroagudin, VL, Ceresini, PC, Claridge, GF, Coelho, G, Coimbra, VRM, Costa, LA, da Cunha, KC, da Silva, SS, Daniel, R, de Beer, ZW, Duenas, M, Edwards, J, Enwistle, P, Fiuza, PO, Fournier, J, Garcia, D, Gibertoni, TB, Giraud, S, Guevara-Suarez, M, Gusmao, LFP, Haituk, S, Heykoop, M, Hirooka, Y, Hofmann, TA, Houbraken, J, Hughes, DP, Kautmanova, I, Koppel, O, Koukol, O, Larsson, E, Latha, KPD, Lee, DH, Lisboa, DO, Lisboa, WS, Lopez-Villalba, A, Maciel, JLN, Manimohan, P, Manjon, JL, Marincowitz, S, Marney, TS, Meijer, M, Miller, AN, Olariaga, I, Paiva, LM, Piepenbring, M, Poveda-Molero, JC, Raj, KNA, Raja, HA, Rougeron, A, Salcedo, I, Samadi, R, Santos, TAB, Scarlett, K, Seifert, KA, Shuttleworth, LA, Silva, GA, Silva, M, Siqueira, JPZ, Souza-Motta, CM, Stephenson, SL, Sutton, DA, Tamakeaw, N, Telleria, MT, Valenzuela-Lopez, N, Viljoen, A, Visagie, CM, Vizzini, A, Wartchow, F, Wingfield, BD, Yurchenko, E, Zamora, JC, Groenewald, JZ, Crous, PW, Wingfiel, MJ, Burgess, TI, Hardy, GESJ, Crane, C, Barrett, S, Cano-Lira, JF, Le Roux, JJ, Thangavel, R, Guarro, J, Stchigel, AM, Martin, MP, Alfredo, DS, Barber, PA, Barreto, RW, Baseia, IG, Cano-Canals, J, Cheewangkoon, R, Ferreira, RJ, Gene, J, Lechat, C, Moreno, G, Roets, F, Shivas, RG, Sousa, JO, Tan, YP, Wiederhold, NP, Abell, SE, Accioly, T, Albizu, JL, Alves, JL, Antoniolli, ZI, Aplin, N, Araujo, J, Arzanlou, M, Bezerra, JDP, Bouchara, J-P, Carlavilla, JR, Castillo, A, Castroagudin, VL, Ceresini, PC, Claridge, GF, Coelho, G, Coimbra, VRM, Costa, LA, da Cunha, KC, da Silva, SS, Daniel, R, de Beer, ZW, Duenas, M, Edwards, J, Enwistle, P, Fiuza, PO, Fournier, J, Garcia, D, Gibertoni, TB, Giraud, S, Guevara-Suarez, M, Gusmao, LFP, Haituk, S, Heykoop, M, Hirooka, Y, Hofmann, TA, Houbraken, J, Hughes, DP, Kautmanova, I, Koppel, O, Koukol, O, Larsson, E, Latha, KPD, Lee, DH, Lisboa, DO, Lisboa, WS, Lopez-Villalba, A, Maciel, JLN, Manimohan, P, Manjon, JL, Marincowitz, S, Marney, TS, Meijer, M, Miller, AN, Olariaga, I, Paiva, LM, Piepenbring, M, Poveda-Molero, JC, Raj, KNA, Raja, HA, Rougeron, A, Salcedo, I, Samadi, R, Santos, TAB, Scarlett, K, Seifert, KA, Shuttleworth, LA, Silva, GA, Silva, M, Siqueira, JPZ, Souza-Motta, CM, Stephenson, SL, Sutton, DA, Tamakeaw, N, Telleria, MT, Valenzuela-Lopez, N, Viljoen, A, Visagie, CM, Vizzini, A, Wartchow, F, Wingfield, BD, Yurchenko, E, Zamora, JC, and Groenewald, JZ
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia: Apiognomonia lasiopetali on Lasiopetalum sp., Blastacervulus eucalyptorum on Eucalyptus adesmophloia, Bullanockia australis (incl. Bullanockia gen. nov.) on Kingia australis, Caliciopsis eucalypti on Eucalyptus marginata, Celerioriella petrophiles on Petrophile teretifolia, Coleophoma xanthosiae on Xanthosia rotundifolia, Coniothyrium hakeae on Hakea sp., Diatrypella banksiae on Banksia formosa, Disculoides corymbiae on Corymbia calophylla, Elsinoë eelemani on Melaleuca alternifolia, Elsinoë eucalyptigena on Eucalyptus kingsmillii, Elsinoë preissianae on Eucalyptus preissiana, Eucasphaeria rustici on Eucalyptus creta, Hyweljonesia queenslandica (incl. Hyweljonesia gen. nov.) on the cocoon of an unidentified microlepidoptera, Mycodiella eucalypti (incl. Mycodiella gen. nov.) on Eucalyptus diversicolor, Myrtapenidiella sporadicae on Eucalyptus sporadica, Neocrinula xanthorrhoeae (incl. Neocrinula gen. nov.) on Xanthorrhoea sp., Ophiocordyceps nooreniae on dead ant, Phaeosphaeriopsis agavacearum on Agave sp., Phlogicylindrium mokarei on Eucalyptus sp., Phyllosticta acaciigena on Acacia suaveolens, Pleurophoma acaciae on Acacia glaucoptera, Pyrenochaeta hakeae on Hakea sp., Readeriella lehmannii on Eucalyptus lehmannii, Saccharata banksiae on Banksia grandis, Saccharata daviesiae on Daviesia pachyphylla, Saccharata eucalyptorum on Eucalyptus bigalerita, Saccharata hakeae on Hakea baxteri, Saccharata hakeicola on Hakea victoria, Saccharata lambertiae on Lambertia ericifolia, Saccharata petrophiles on Petrophile sp., Saccharata petrophilicola on Petrophile fastigiata, Sphaerellopsis hakeae on Hakea sp., and Teichospora kingiae on Kingia australis.Brazil: Adautomilanezia caesalpiniae (incl. Adautomilanezia gen. nov.) on Caesalpina echinata, Arthrophiala arthrospora (incl. Arthrophiala gen. nov.) on Sagittaria montevidensis, Diaporthe caatingaensis (endophyte from Taci
- Published
- 2016
6. Suppression of Phytophthora Root Rot by a Composted Eucalyptus Bark Mix.
- Author
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Hardy, GESJ, primary and Sivasithamparam, K, additional
- Published
- 1991
- Full Text
- View/download PDF
7. A Global Assessment of the State of Plant Health.
- Author
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Acuña I, Andrade-Piedra J, Andrivon D, Armengol J, Arnold AE, Avelino J, Bandyopadhyay R, Bihon Legesse W, Bock CH, Bove F, Brenes-Arguedas T, Calonnec A, Carmona M, Carnegie AJ, Castilla NP, Chen X, Coletta-Filho HD, Coley PD, Cox KD, Davey T, Del Ponte E, Denman S, Desprez-Loustau ML, Dewdney MM, Djurle A, Drenth A, Ducousso A, Esker P, Fiaboe KM, Fourie PH, Frankel SJ, Frey P, Garcia-Figuera S, Garrett KA, Guérin M, Hardy GESJ, Hausladen H, Hu X, Hüberli D, Juzwik J, Kang Z, Kenyon L, Kreuze J, Kromann P, Kubiriba J, Kuhnem P, Kumar J, Kumar PL, Lebrun MH, Legg JP, Leon A, Ma Z, Mahuku G, Makinson RO, Marzachi C, McDonald BA, McRoberts N, Menkir A, Mikaberidze A, Munck IA, Nelson A, Nguyen NTT, O’Gara E, Ojiambo P, Ortega-Beltran A, Paul P, Pethybridge S, Pinon J, Ramsfield T, Rizzo DM, Rossi V, Safni I, Sah S, Santini A, Sautua F, Savary S, Schreinemachers P, Singh M, Spear ER, Srinivasan R, Tripathi L, Vicent A, Viljoen A, Willocquet L, Woods AJ, Wu B, Xia X, Xu X, Yuen J, Zalamea PC, and Zhou C
- Subjects
- Agriculture, Plants, Soil, Ecosystem, Plant Breeding
- Abstract
The Global Plant Health Assessment (GPHA) is a collective, volunteer-based effort to assemble expert opinions on plant health and disease impacts on ecosystem services based on published scientific evidence. The GPHA considers a range of forest, agricultural, and urban systems worldwide. These are referred to as (Ecoregion × Plant System), i.e., selected case examples involving keystone plants in given parts of the world. The GPHA focuses on infectious plant diseases and plant pathogens, but encompasses the abiotic (e.g., temperature, drought, and floods) and other biotic (e.g., animal pests and humans) factors associated with plant health. Among the 33 (Ecoregion × Plant System) considered, 18 are assessed as in fair or poor health, and 20 as in declining health. Much of the observed state of plant health and its trends are driven by a combination of forces, including climate change, species invasions, and human management. Healthy plants ensure (i) provisioning (food, fiber, and material), (ii) regulation (climate, atmosphere, water, and soils), and (iii) cultural (recreation, inspiration, and spiritual) ecosystem services. All these roles that plants play are threatened by plant diseases. Nearly none of these three ecosystem services are assessed as improving. Results indicate that the poor state of plant health in sub-Saharan Africa gravely contributes to food insecurity and environmental degradation. Results further call for the need to improve crop health to ensure food security in the most populated parts of the world, such as in South Asia, where the poorest of the poor, the landless farmers, are at the greatest risk. The overview of results generated from this work identifies directions for future research to be championed by a new generation of scientists and revived public extension services. Breakthroughs from science are needed to (i) gather more data on plant health and its consequences, (ii) identify collective actions to manage plant systems, (iii) exploit the phytobiome diversity in breeding programs, (iv) breed for plant genotypes with resilience to biotic and abiotic stresses, and (v) design and implement plant systems involving the diversity required to ensure their adaptation to current and growing challenges, including climate change and pathogen invasions., Competing Interests: The author(s) declare no conflict of interest.
- Published
- 2023
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8. Physiological and cannabinoid responses of hemp ( Cannabis sativa ) to rock phosphate dust under tropical conditions.
- Author
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De Prato L, Ansari O, Hardy GESJ, Howieson J, O'Hara G, and Ruthrof KX
- Subjects
- Phosphates, Cadmium, Dust, Tropical Climate, Cannabis physiology, Cannabinoids
- Abstract
Growing a high-value crop such as industrial hemp (Cannabis sativa L.) in post-mining environments is economically and environmentally attractive but faces a range of biotic and abiotic challenges. An opportunity to investigate the cultivation of C. sativa presented itself as part of post-mining activities on Christmas Island (Australia) to profitably utilise disused phosphate (PS) quarries. Challenges to plant growth and cadmium (Cd) uptake were addressed in this study using potted plants under fully controlled conditions in a growth chamber. A complete nutritional spectrum, slow-release fertiliser was applied to all plants as a control treatment, and two levels of rock PS dust, a waste product of PS mining that contains 35% phosphorus (P) and 40ppm of naturally occurring Cd, were applied at 54 and 162gL-1 . After 12weeks, control plants (no PS dust) significantly differed in phenological development, with no flower production, lower aboveground biomass and reduced photosynthesis efficiency than those with P applied as rock dust. Compared with the controls, the 54gL-1 level of P dust increased shoot biomass by 38%, while 162gL-1 increased shoot biomass by 85%. The concentration of Δ9 -tetrahydrocannabinol also increased with the higher P levels. Cd uptake from PS dust by C. sativa was substantial and warrants further investigation. However, there was no increase in Cd content between the 54 and 162gL-1 application rates in seed and leaf. Results indicate that hemp could become a high-value crop on Christmas Island, with the readily available rock PS dust providing a source of P.
- Published
- 2023
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9. Potassium Phosphonate Induces Resistance in Sweet Chestnut against Ink Disease Caused by Phytophthora Species.
- Author
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Brandano A, Serra S, Hardy GESJ, and Scanu B
- Abstract
Ink disease, caused by Phytophthora spp., represents a serious threat to sweet chestnuts throughout their distribution area. Among the control strategies, new perspectives have been offered by using potassium phosphonate, which indirectly controls Phytophthora diseases by acting on both host physiology and host-pathogen interactions. In this study, we tested in planta the effectiveness of trunk injection with K-phosphonate against seven different Phytophthora species associated with ink disease. For the two most aggressive species, P. cinnamomi and P . × cambivora , the treatments were repeated at two different environmental conditions (a mean temperature of 14.5 °C vs. 25 °C) and tree phenology stages. The results obtained in this study demonstrated that K-phosphonate could contain the development of Phytophthora infection in phloem tissues. However, its effectiveness varied based on the concentration applied and the Phytophthora species tested. A concentration of 280 g/L of K-phosphonate was the most effective, and in some cases, callus formation around the necrotic lesion was detected. Overall, this study broadens the knowledge of endotherapic treatments with K-phosphonate as an effective measure for managing chestnut ink disease. Interestingly, the increase in mean temperature had a positive impact on the development of P. cinnamomi lesions on chestnut phloem tissues.
- Published
- 2023
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10. Semi-quantitative analysis of cannabinoids in hemp (Cannabis sativa L.) using gas chromatography coupled to mass spectrometry.
- Author
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De Prato L, Timmins M, Ansari O, Ruthrof KX, Hardy GESJ, Howieson J, and O'Hara G
- Abstract
Background: Hemp (Cannabis sativa L.) is a producer of cannabinoids. These organic compounds are of increasing interest due to their potential applications in the medicinal field. Advances in analytical methods of identifying and quantifying these molecules are needed., Method: This study describes a new method of cannabinoid separation from plant material using gas chromatography-mass spectrometry (GC-MS) as the analytical tool to detect low abundance cannabinoids that will likely have implications for future therapeutical treatments. A novel approach was adopted to separate trichomes from plant material to analyse cannabinoids of low abundance not observed in raw plant extract. Required plant sample used for analysis was greatly reduced compared to other methods. Derivatisation method was simplified and deconvolution software was utilised to recognise unknown cannabinoid compounds of low abundance., Results: The method produces well-separated spectra and allows the detection of major and minor cannabinoids. Ten cannabinoids that had available standards could be identified and quantified and numerous unidentified cannabinoids or pathway intermediates based on GC-MS spectra similarities could be extracted and analysed simultaneously with this method., Conclusions: This is a rapid novel extraction and analytical method from plant material that can identify major and minor cannabinoids using a simple technique. The method will be of use to future researchers seeking to study the multitude of cannabinoids whose values are currently not understood., (© 2022. The Author(s).)
- Published
- 2022
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11. Changes to the Bacterial Microbiome in the Rhizosphere and Root Endosphere of Persea americana (Avocado) Treated With Organic Mulch and a Silicate-Based Mulch or Phosphite, and Infested With Phytophthora cinnamomi .
- Author
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Farooq QUA, Hardy GESJ, McComb JA, Thomson PC, and Burgess TI
- Abstract
Plant growth and responses of the microbial profile of the rhizosphere soil and root endosphere were investigated for avocado plants infested or not infested with Phytophthora cinnamomi and the changes were compared in plants grown with various soil additives or by spraying plants with phosphite. Soil treatments were organic mulches or silica-based mineral mulch. Reduction of root growth and visible root damage was least in the infested plants treated with phosphite or mineral mulch applied to the soil. Rhizosphere soils and root endospheres were analyzed for bacterial communities using metabarcoding. Bacterial abundance and diversity were reduced in infested rhizospheres and root endospheres. The presence or absence of mineral mulch resulted in greater diversity and larger differences in rhizosphere community composition between infested and non-infested pots than any other treatment. Some rhizosphere bacterial groups, especially Actinobacteria and Proteobacteria, had significantly higher relative abundance in the presence of Phytophthora . The bacterial communities of root endospheres were lower in abundance than rhizosphere communities and not affected by soil treatments or phosphite but increased in abundance after infection with P. cinnamomi . These findings suggested that the addition of silicate-based mineral mulch protects against Phytophthora root rot, which may be partly mediated through changes in rhizosphere bacterial community composition. However, the changes to the microbiome induced by spraying plants with phosphite are different from those resulting from the application of mineral mulch to the soil., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Farooq, Hardy, McComb, Thomson and Burgess.)
- Published
- 2022
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12. qPCR Assays for Sensitive and Rapid Detection of Quambalaria Species from Plant Tissues.
- Author
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Duong HT, Williams B, White D, Burgess TI, and Hardy GESJ
- Subjects
- Ecosystem, Plant Diseases microbiology, Real-Time Polymerase Chain Reaction, Basidiomycota isolation & purification, Eucalyptus microbiology
- Abstract
Several species from the genus Quambalaria (order Microstromatales) cause diseases on eucalypts ( Eucalyptus and related genera) both in plantations and natural ecosystems. We developed real-time quantitative PCR (qPCR) assays to rapidly detect and distinguish five Quambalaria species. The design of the species-specific qPCR assay for each species, Q. pitereka (PIT), Q. coyrecup (COR), Q. cyanescens (CYN), Q. pusilla (PUS), and Q. eucalypti (EUC), was based on the ITS region and was evaluated for specificity and sensitivity. The PIT, COR, and CYN qPCR assays could amplify as little as 10 fg µl
-1 from pure cultures, whereas PUS and EUC qPCR assays could amplify 100 fg µl-1 of their target species. The PIT, COR, and CYN qPCR assays were further validated using naturally and artificially infected samples of their plant host Corymbia calophylla. These assays will be used for rapid diagnostics and future experiments on the infection process.- Published
- 2022
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13. Global meta-analysis of tree decline impacts on fauna.
- Author
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Fleming PA, Wentzel JJ, Dundas SJ, Kreplins TL, Craig MD, and Hardy GESJ
- Subjects
- Animals, Birds, Forests, Mammals, Ecosystem, Trees
- Abstract
Significant portions of the world's forests have been impacted by severe and large-scale tree declines characterised by gradual but widespread loss of vigour and subsequent death of either single or several tree species. Tree deaths represent a threat for fauna that are dependent on forest habitats for their survival. Although tree declines have received considerable scientific attention, surprisingly, little is known about their impacts on fauna. In total, we calculated 631 effect sizes across 59 studies that quantified the impact of tree declines on animal abundance. Data representing 186 bird species indicated an overall increase in bird abundance in response to tree declines (meta-analysis mean ± estimation g = 0.172 ± 0.053 [CI 0.069 to 0.275], P = 0.001); however, there was substantial variability in responses (significant heterogeneity P < 0.001) with a strong influence of diet as well as nesting guild on bird responses. Granivores (especially ground-foraging species, e.g. Passerellidae species), bark-foraging insectivores (e.g. woodpeckers), as well as ground- and cavity-nesting species apparently benefitted from tree declines, while nectarivorous birds [and, although not significant, aerially foraging insectivores (e.g. flycatchers) and leaf-gleaning insectivores (canopy-feeding)] were less common in the presence of tree declines. Data representing 33 mammal species indicate a tendency for detrimental effects of tree declines on mammals that use trees as refuges, while aerial foragers (i.e. bats) may benefit from opening up the canopy. Overall the average effect for mammals was neutral (meta-analysis mean estimation g = -0.150 ± 0.145 [-0.433 to 0.134], P = 0.302). Data representing 20 reptile species showed an insufficient range of responses to determine any diet or foraging effect on their responses. Data for 28 arthropod taxa should be considered with caution, as we could not adequately separate taxa according to their specialisations and reliance on key habitat. The data broadly suggest a detrimental effect of tree declines (meta-analysis mean estimation g = -0.171 ± 0.072 [-0.311 to -0.031], P = 0.017) with ground-foraging arthropods (e.g. detritivores and predators such as spiders and centipedes) more likely to be detrimentally impacted by tree declines. The range of responses to tree declines signifies substantially altered animal communities. In many instances, altered ecosystem function due to loss of key animal services will represent a significant threat to forest health., (© 2021 Cambridge Philosophical Society.)
- Published
- 2021
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14. Gene Validation and Remodelling Using Proteogenomics of Phytophthora cinnamomi , the Causal Agent of Dieback.
- Author
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Andronis CE, Hane JK, Bringans S, Hardy GESJ, Jacques S, Lipscombe R, and Tan KC
- Abstract
Phytophthora cinnamomi is a pathogenic oomycete that causes plant dieback disease across a range of natural ecosystems and in many agriculturally important crops on a global scale. An annotated draft genome sequence is publicly available (JGI Mycocosm) and suggests 26,131 gene models. In this study, soluble mycelial, extracellular (secretome), and zoospore proteins of P. cinnamomi were exploited to refine the genome by correcting gene annotations and discovering novel genes. By implementing the diverse set of sub-proteomes into a generated proteogenomics pipeline, we were able to improve the P. cinnamomi genome annotation. Liquid chromatography mass spectrometry was used to obtain high confidence peptides with spectral matching to both the annotated genome and a generated 6-frame translation. Two thousand seven hundred sixty-four annotations from the draft genome were confirmed by spectral matching. Using a proteogenomic pipeline, mass spectra were used to edit the P. cinnamomi genome and allowed identification of 23 new gene models and 60 edited gene features using high confidence peptides obtained by mass spectrometry, suggesting a rate of incorrect annotations of 3% of the detectable proteome. The novel features were further validated by total peptide support, alongside functional analysis including the use of Gene Ontology and functional domain identification. We demonstrated the use of spectral data in combination with our proteogenomics pipeline can be used to improve the genome annotation of important plant diseases and identify missed genes. This study presents the first use of spectral data to edit and manually annotate an oomycete pathogen., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Andronis, Hane, Bringans, Hardy, Jacques, Lipscombe and Tan.)
- Published
- 2021
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15. Underappreciated plant vulnerabilities to heat waves.
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Breshears DD, Fontaine JB, Ruthrof KX, Field JP, Feng X, Burger JR, Law DJ, Kala J, and Hardy GESJ
- Subjects
- Climate Change, Plants, Seasons, Ecosystem, Hot Temperature
- Abstract
With climate change, heat waves are becoming increasingly frequent, intense and broader in spatial extent. However, while the lethal effects of heat waves on humans are well documented, the impacts on flora are less well understood, perhaps except for crops. We summarize recent findings related to heat wave impacts including: sublethal and lethal effects at leaf and plant scales, secondary ecosystem effects, and more complex impacts such as increased heat wave frequency across all seasons, and interactions with other disturbances. We propose generalizable practical trials to quantify the critical bounding conditions of vulnerability to heat waves. Collectively, plant vulnerabilities to heat waves appear to be underappreciated and understudied, particularly with respect to understanding heat wave driven plant die-off and ecosystem tipping points., (© 2021 The Authors New Phytologist © 2021 New Phytologist Foundation.)
- Published
- 2021
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16. Timing and abundance of sporangia production and zoospore release influences the recovery of different Phytophthora species by baiting.
- Author
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Sarker SR, McComb J, Burgess TI, and Hardy GESJ
- Subjects
- Environmental Monitoring methods, Time Factors, Phytophthora physiology, Sporangia physiology
- Abstract
Analysis of soil samples using High Throughput Sequencing (HTS) frequently detects more Phytophthora species compared with traditional soil baiting methods. This study investigated whether differences between species in the timing and abundance of sporangial production and zoospore release could be a reason for the lower number of species isolated by baiting. Stems of Eucalyptus marginata were inoculated with ten Phytophthora species (P. nicotianae, P. multivora, P. pseudocryptogea, P. cinnamomi, P. thermophila, P. arenaria, P. heveae, P. constricta, P. gondwanensis and P. versiformis), and lesioned sections for each species were baited separately in water. There were significant differences between species in timing of sporangia production and zoospore release. P. nicotianae, P. pseudocryptogea, P. multivora and P. thermophila released zoospores within 8-12 h and could be isolated from lesioned baits within 1-2 days. In contrast, P. constricta did not produce zoospores for over 48 h and was only isolated 5-7 days after baiting. P. heveae and P. versiformis did not produce zoospores and were not recovered from the baits. When species were paired in the same baiting tub, those that produced zoospores in the shortest time were isolated most frequently, while species slow to produce zoospores, or which produced them in lower numbers, were isolated from few baits or not at all. Thus, species differences in the timing of sporangia production and zoospore release may contribute to the ease of isolation of some Phytophthora species when they are present together with other Phytophthora species in an environmental sample., Competing Interests: Declaration of competing interest We confirm that we have no conflicts of interest to disclose., (Copyright © 2021 British Mycological Society. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2021
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17. A qPCR Assay for the Detection of Phytophthora cinnamomi Including an mRNA Protocol Designed to Establish Propagule Viability in Environmental Samples.
- Author
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Kunadiya MB, Dunstan WD, White D, Hardy GESJ, Grigg AH, and Burgess TI
- Subjects
- Environment, Reproducibility of Results, Phytophthora genetics, RNA, Messenger genetics, Real-Time Polymerase Chain Reaction, Soil parasitology
- Abstract
Phytophthora cinnamomi causes root and collar rot in many plant species in natural ecosystems and horticulture. A species-specific primer and probe PCIN5 were designed based on a mitochondrial locus encoding subunit 2 of cytochrome c oxidase ( cox 2). Eight PCR primers, including three forward and five reverse, were designed and tested in all possible combinations. Annealing temperatures were optimized for each primer pair set to maximize both specificity and sensitivity. Each set was tested against P. cinnamomi and two closely related clade 7 species, P. parvispora and P. niederhauseri . From these tests, five primer pairs were selected based on specificity and, with a species-specific P. cinnamomi probe, used to develop quantitative real-time PCR (qPCR) assays. The specificity of the two most sensitive qPCR assays was confirmed using the genomic DNA of 29 Phytophthora isolates, including 17 isolates of 11 species from clade 7, and representative species from nine other clades (all except clade 3). The assay was able to detect as little as 150 ag of P. cinnamomi DNA and showed no cross-reaction with other Phytophthora species, except for P. parvispora , a very closely related species to P. cinnamomi , which showed late amplification at high DNA concentrations. The efficiency of the qPCR protocol was evaluated with environmental samples including roots and associated soil from plants artificially infected with P. cinnamomi . Different RNA isolation kits were tested and evaluated for their performance in the isolation of RNA from environmental samples, followed by cDNA synthesis, and qPCR assay. Finally, a protocol was recommended for determining the presence of P. cinnamomi in recalcitrant environmental samples.
- Published
- 2019
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18. Carbon consequences of drought differ in forests that resprout.
- Author
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Walden LL, Fontaine JB, Ruthrof KX, Matusick G, Harper RJ, and Hardy GESJ
- Subjects
- Australia, Carbon analysis, Climate Change, Fires, Trees chemistry, Trees growth & development, Carbon Sequestration, Droughts, Forests, Trees physiology
- Abstract
Prolonged drought and intense heat-related events trigger sudden forest die-off events and have now been reported from all forested continents. Such die-offs are concerning given that drought and heatwave events are forecast to increase in severity and duration as climate change progresses. Quantifying consequences to carbon dynamics and storage from die-off events are critical for determining the current and future mitigation potential of forests. We took stand measurements five times over 2+ years from affected and unaffected plots across the Northern Jarrah Forest, southwestern Australia, following an acute drought/heatwave in 2011. We found a significant loss of live standing carbon (49.3 t ha
-1 ), and subsequently a significant increase in the dead standing carbon pool by 6 months post-die-off. Of the persisting live trees, 38% experienced partial mortality contributing to the rapid regrowth and replenishment (82%-88%) of labile carbon pools (foliage, twigs, and branches) within 26 months. Such regrowth was not substantial in terms of net carbon changes within the timeframe of the study but does reflect the resprouting resilience of this forest type. Dead carbon generated by the die-off may persist for centuries given low fragmentation and decay rates resulting in low biogenic emission rates relative to other forest types. However, future fire may threaten persistence of both dead and live pools via combustion and mortality of live tissue and impaired regrowth capacity. Resprouting forests are commonly regarded as resilient systems, however, a changing climate could see vulnerable portions of forests become carbon sources rather than carbon sinks., (© 2019 John Wiley & Sons Ltd.)- Published
- 2019
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19. Tree host-pathogen interactions as influenced by drought timing: linking physiological performance, biochemical defence and disease severity.
- Author
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Hossain M, Veneklaas EJ, Hardy GESJ, and Poot P
- Subjects
- Host-Pathogen Interactions, Myrtaceae growth & development, Stress, Physiological, Trees growth & development, Basidiomycota, Droughts, Myrtaceae microbiology, Plant Diseases microbiology, Trees microbiology
- Abstract
There is increasing concern about tree mortality around the world due to climatic extremes and associated shifts in pest and pathogen dynamics. Yet, empirical studies addressing the interactive effect of biotic and abiotic stress on plants are very rare. Therefore, in this study, we examined the interaction between drought stress and a canker pathogen, Quambalaria coyrecup, on the eucalypt - Corymbia calophylla (marri), which is experiencing increasing drought stress. We hypothesized that drought stress would increase marri's susceptibility to canker disease, and cankers would have the largest negative effect on plants that are already drought stressed before pathogen inoculation. To test the hypotheses, in a glasshouse, marri saplings were exposed to drought either before or after pathogen inoculation, or were well-watered or droughted throughout the experiment either with or without inoculation. Canker development was greater in well-watered saplings than in droughted saplings, with the fastest development occurring in well-watered saplings that had experienced drought stress before inoculation. Irrespective of water treatments, marri saplings employed phenol-based localized biochemical defence against the pathogen. Drought reduced photosynthesis and growth, however, a negative effect of canker disease on saplings' physiological performance was only observed in well-watered saplings. In well-watered saplings, canker-induced loss of sapwood function contributed to reduced whole-plant hydraulic conductance, photosynthesis and growth. The results provide evidence that timing of drought stress influences host physiology, and host condition influences canker disease susceptibility through differences in induced biochemical defence mechanisms. The observations highlight the importance of explicitly incorporating abiotic and biotic stress, as well as their interactions, in future studies of tree mortality in drought-prone regions worldwide.
- Published
- 2019
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20. Fungal Planet description sheets: 716-784.
- Author
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Crous PW, Wingfield MJ, Burgess TI, Hardy GESJ, Gené J, Guarro J, Baseia IG, García D, Gusmão LFP, Souza-Motta CM, Thangavel R, Adamčík S, Barili A, Barnes CW, Bezerra JDP, Bordallo JJ, Cano-Lira JF, de Oliveira RJV, Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín MP, Moreau PA, Morte A, Ordoñez ME, Rodríguez A, Stchigel AM, Vizzini A, Abdollahzadeh J, Abreu VP, Adamčíková K, Albuquerque GMR, Alexandrova AV, Álvarez Duarte E, Armstrong-Cho C, Banniza S, Barbosa RN, Bellanger JM, Bezerra JL, Cabral TS, Caboň M, Caicedo E, Cantillo T, Carnegie AJ, Carmo LT, Castañeda-Ruiz RF, Clement CR, Čmoková A, Conceição LB, Cruz RHSF, Damm U, da Silva BDB, da Silva GA, da Silva RMF, de A Santiago ALCM, de Oliveira LF, de Souza CAF, Déniel F, Dima B, Dong G, Edwards J, Félix CR, Fournier J, Gibertoni TB, Hosaka K, Iturriaga T, Jadan M, Jany JL, Jurjević Ž, Kolařík M, Kušan I, Landell MF, Leite Cordeiro TR, Lima DX, Loizides M, Luo S, Machado AR, Madrid H, Magalhães OMC, Marinho P, Matočec N, Mešić A, Miller AN, Morozova OV, Neves RP, Nonaka K, Nováková A, Oberlies NH, Oliveira-Filho JRC, Oliveira TGL, Papp V, Pereira OL, Perrone G, Peterson SW, Pham THG, Raja HA, Raudabaugh DB, Řehulka J, Rodríguez-Andrade E, Saba M, Schauflerová A, Shivas RG, Simonini G, Siqueira JPZ, Sousa JO, Stajsic V, Svetasheva T, Tan YP, Tkalčec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Marques DA, Wong PTW, Xavier de Lima V, and Groenewald JZ
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia , Chaetopsina eucalypti on Eucalyptus leaf litter, Colletotrichum cobbittiense from Cordyline stricta × C. australis hybrid, Cyanodermella banksiae on Banksia ericifolia subsp. macrantha, Discosia macrozamiae on Macrozamia miquelii, Elsinoë banksiigena on Banksia marginata, Elsinoë elaeocarpi on Elaeocarpus sp., Elsinoë leucopogonis on Leucopogon sp., Helminthosporium livistonae on Livistona australis , Idriellomyces eucalypti (incl. Idriellomyces gen. nov.) on Eucalyptus obliqua , Lareunionomyces eucalypti on Eucalyptus sp., Myrotheciomyces corymbiae (incl. Myrotheciomyces gen. nov., Myrotheciomycetaceae fam. nov.), Neolauriomyces eucalypti (incl. Neolauriomyces gen. nov., Neolauriomycetaceae fam. nov.) on Eucalyptus sp., Nullicamyces eucalypti (incl. Nullicamyces gen. nov.) on Eucalyptus leaf litter, Oidiodendron eucalypti on Eucalyptus maidenii , Paracladophialophora cyperacearum (incl. Paracladophialophoraceae fam. nov.) and Periconia cyperacearum on leaves of Cyperaceae , Porodiplodia livistonae (incl. Porodiplodia gen. nov., Porodiplodiaceae fam. nov.) on Livistona australis , Sporidesmium melaleucae (incl. Sporidesmiales ord. nov.) on Melaleuca sp., Teratosphaeria sieberi on Eucalyptus sieberi , Thecaphora australiensis in capsules of a variant of Oxalis exilis. Brazil , Aspergillus serratalhadensis from soil, Diaporthe pseudoinconspicua from Poincianella pyramidalis , Fomitiporella pertenuis on dead wood, Geastrum magnosporum on soil, Marquesius aquaticus (incl. Marquesius gen. nov.) from submerged decaying twig and leaves of unidentified plant, Mastigosporella pigmentata from leaves of Qualea parviflorae , Mucor souzae from soil, Mycocalia aquaphila on decaying wood from tidal detritus, Preussia citrullina as endophyte from leaves of Citrullus lanatus , Queiroziella brasiliensis (incl. Queiroziella gen. nov.) as epiphytic yeast on leaves of Portea leptantha , Quixadomyces cearensis (incl. Quixadomyces gen. nov.) on decaying bark, Xylophallus clavatus on rotten wood. Canada , Didymella cari on Carum carvi and Coriandrum sativum. Chile , Araucasphaeria foliorum (incl. Araucasphaeria gen. nov.) on Araucaria araucana , Aspergillus tumidus from soil, Lomentospora valparaisensis from soil. Colombia , Corynespora pseudocassiicola on Byrsonima sp., Eucalyptostroma eucalyptorum on Eucalyptus pellita , Neometulocladosporiella eucalypti (incl. Neometulocladosporiella gen. nov.) on Eucalyptus grandis × urophylla , Tracylla eucalypti (incl. Tracyllaceae fam. nov., Tracyllalales ord. nov.) on Eucalyptus urophylla. Cyprus , Gyromitra anthracobia (incl. Gyromitra subg. Pseudoverpa ) on burned soil. Czech Republic , Lecanicillium restrictum from the surface of the wooden barrel, Lecanicillium testudineum from scales of Trachemys scripta elegans . Ecuador , Entoloma yanacolor and Saproamanita quitensis on soil. France , Lentithecium carbonneanum from submerged decorticated Populus branch. Hungary , Pleuromyces hungaricus (incl. Pleuromyces gen. nov.) from a large Fagus sylvatica log. Iran , Zymoseptoria crescenta on Aegilops triuncialis. Malaysia , Ochroconis musicola on Musa sp. Mexico , Cladosporium michoacanense from soil. New Zealand , Acrodontium metrosideri on Metrosideros excelsa, Polynema podocarpi on Podocarpus totara, Pseudoarthrographis phlogis (incl. Pseudoarthrographis gen. nov.) on Phlox subulata. Nigeria , Coprinopsis afrocinerea on soil. Pakistan , Russula mansehraensis on soil under Pinus roxburghii. Russia , Baorangia alexandri on soil in deciduous forests with Quercus mongolica. South Africa , Didymocyrtis brachylaenae on Brachylaena discolor. Spain , Alfaria dactylis from fruit of Phoenix dactylifera, Dothiora infuscans from a blackened wall, Exophiala nidicola from the nest of an unidentified bird, Matsushimaea monilioides from soil, Terfezia morenoi on soil. United Arab Emirates , Tirmania honrubiae on soil. USA , Arxotrichum wyomingense (incl. Arxotrichum gen. nov.) from soil, Hongkongmyces snookiorum from submerged detritus from a fresh water fen, Leratiomyces tesquorum from soil, Talaromyces tabacinus on leaves of Nicotiana tabacum. Vietnam , Afroboletus vietnamensis on soil in an evergreen tropical forest, Colletotrichum condaoense from Ipomoea pes-caprae. Morphological and culture characteristics along with DNA barcodes are provided.
- Published
- 2018
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21. New species from Phytophthora Clade 6a: evidence for recent radiation.
- Author
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Burgess TI, Simamora AV, White D, Wiliams B, Schwager M, Stukely MJC, and Hardy GESJ
- Abstract
During routine vegetation health surveys in the southwest of Western Australia (SWWA), several Phytophthora isolates with affinity to Clade 6a have been recovered. In this study, all known taxa from Clade 6a, P. inundata , P. humicola , P. gemini , P . 'walnut' and P . 'personii', and the new isolates were compared based on morphology and DNA sequence data from three nuclear genes and two mitochondrial genes resulting in the description of five new species, P. balyanboodja , P. condilina , P. cooljarloo , P. kwongonina and P. pseudorosacearum. With the exception of P. gemini and P. humicola , all species from Clade 6a have been recovered from natural ecosystems in SWWA. These species are morphologically similar, with predominantly ovoid sporangia and nested and extended internal proliferation. If oospores are present, they tend to be aplerotic with paragynous antheridia mostly attached adjacent to the oogonial stalk. They can all grow at 35 °C and have a fast growth rate on most agar media. These species have all been recovered from the rhizosphere soil and dead and dying plants within dry kwongon heathlands, often from water gaining sites and frequently from very isolated areas. The radiation, origin and potential ecological role of these species are discussed.
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- 2018
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22. Subcontinental heat wave triggers terrestrial and marine, multi-taxa responses.
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Ruthrof KX, Breshears DD, Fontaine JB, Froend RH, Matusick G, Kala J, Miller BP, Mitchell PJ, Wilson SK, van Keulen M, Enright NJ, Law DJ, Wernberg T, and Hardy GESJ
- Subjects
- Climate Change, Aquatic Organisms physiology, Hot Temperature, Phylogeny
- Abstract
Heat waves have profoundly impacted biota globally over the past decade, especially where their ecological impacts are rapid, diverse, and broad-scale. Although usually considered in isolation for either terrestrial or marine ecosystems, heat waves can straddle ecosystems of both types at subcontinental scales, potentially impacting larger areas and taxonomic breadth than previously envisioned. Using climatic and multi-species demographic data collected in Western Australia, we show that a massive heat wave event straddling terrestrial and maritime ecosystems triggered abrupt, synchronous, and multi-trophic ecological disruptions, including mortality, demographic shifts and altered species distributions. Tree die-off and coral bleaching occurred concurrently in response to the heat wave, and were accompanied by terrestrial plant mortality, seagrass and kelp loss, population crash of an endangered terrestrial bird species, plummeting breeding success in marine penguins, and outbreaks of terrestrial wood-boring insects. These multiple taxa and trophic-level impacts spanned >300,000 km
2 -comparable to the size of California-encompassing one terrestrial Global Biodiversity Hotspot and two marine World Heritage Areas. The subcontinental multi-taxa context documented here reveals that terrestrial and marine biotic responses to heat waves do not occur in isolation, implying that the extent of ecological vulnerability to projected increases in heat waves is underestimated.- Published
- 2018
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23. Transitioning from phosphate mining to agriculture: Responses to urea and slow release fertilizers for Sorghum bicolor.
- Author
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Ruthrof KX, Steel E, Misra S, McComb J, O'Hara G, Hardy GESJ, and Howieson J
- Subjects
- Australia, Phosphates, Soil, Soil Pollutants chemistry, Sorghum chemistry, Agriculture, Cadmium chemistry, Fertilizers, Mining, Sorghum growth & development, Urea metabolism
- Abstract
Globally, land-use transition from mining to agriculture is becoming increasingly attractive and necessary for many reasons. However, low levels of necessary plant nutrients, and high levels of heavy metals, can hamper plant growth, affecting yield, and potentially, food safety. In post-phosphate mining substrates, for example, nitrogen (N) is a key limiting nutrient, and, although legumes are planted prior to cereals, N supplementation is still necessary. We undertook two field trials on Christmas Island, Australia, to determine whether Sorghum bicolor could be grown successfully in a post-phosphate mining substrate. The first trial investigated N (urea) demand (amount of N required for adequate crop growth) for S. bicolor, and whether N addition could reduce the naturally occurring cadmium (Cd) concentrations in the crop. The second trial examined whether slow release nitrogen fertilizers (SRF) could replace urea to increase biomass and reduce Cd concentrations. Our first trial demonstrated that S. bicolor has a high N demand, with the highest biomass being recorded in the 160kg/ha urea treatment. However, plants treated with 80, 120 and 160kg/ha were not significantly different from one another. After 7weeks of growth, leaf Cd concentrations were significantly lower for all urea treatments compared with the control plants. However, after 23weeks, seed Cd concentrations did not differ across treatments. Our second trial demonstrated that the application of SRF (Macracote® and Sulsync®) and 160kg/ha urea significantly increased biomass above the control plants. There was, however, no treatment response in terms of Cd or N concentrations in the seed at final harvest. Thus, we have shown that N is currently critical for S. bicolor, even following legume cropping, and that high biomass and a significant reduction in Cd can be attained with appropriate levels of urea. Our work has important implications for cereal growth and food safety in post-mining agriculture., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2018
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24. eDNA from roots: a robust tool for determining Phytophthora communities in natural ecosystems.
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Khaliq I, Hardy GESJ, White D, and Burgess TI
- Subjects
- DNA genetics, DNA Primers genetics, Ecosystem, Phytophthora classification, Phytophthora isolation & purification, Plant Development, Plants microbiology, Soil parasitology, Phytophthora genetics, Plant Roots microbiology, Plant Roots parasitology
- Abstract
Proper isolation and identification of Phytophthora species is critical due to their broad distribution and huge impact on natural ecosystems throughout the world. In this study, five different sites were sampled and seven methods were compared to determine the Phytophthora community. Three traditional isolation methods were conducted (i) soil baiting, (ii) filtering of the bait water and (iii) isolation from field roots using Granny Smith apples. These were compared to four sources of eDNA used for metabarcoding using Phytophthora-specific primers on (i) sieved field soil, (ii) roots from field, (iii) filtered baiting water and (iv) roots from bait plants grown in the glasshouse in soil collected from these sites. Six Phytophthora species each were recovered by soil baiting using bait leaves and from the filtered bait water. No Phytophthora species were recovered from Granny Smith apples. eDNA extracted from field roots detected the highest number of Phytophthora species (25). These were followed by direct DNA isolation from filters (24), isolation from roots from bait plants grown in the glasshouse (19), and DNA extraction from field soil (13). Therefore, roots were determined to be the best substrate for detecting Phytophthora communities using eDNA.
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- 2018
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25. Phytophthora Contamination in a Nursery and Its Potential Dispersal into the Natural Environment.
- Author
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Simamora AV, Paap T, Howard K, Stukely MJC, Hardy GESJ, and Burgess TI
- Subjects
- Environment, Forestry, Seedlings physiology, Western Australia, Eucalyptus microbiology, Phytophthora physiology, Plant Diseases microbiology
- Abstract
A detailed site investigation of a eucalypt nursery suffering disease losses revealed the causal agent to be Phytophthora boodjera. The pathogen was detected in vegetation surrounding the nursery production area, including the lawn, under the production benches during the growing season, and, most importantly, from plant debris in used trays. However, it was not found in the container substrate, water supplies, or production equipment or on the workers themselves. The sterilization methods used by the nursery were shown to be ineffective, indicating that a more rigorous method was required. Boiling trays for 15 min or steaming at 65°C for 60 min eradicated P. boodjera. This pathogen was more pathogenic to the eucalypts tested in their early seedling stage than P. cinnamomi. Tracing of out-planting to revegetation sites showed that P. boodjera was able to spread into the environment. Dispersal via out-planting to native vegetation may affect seedling recruitment and drive long-term shifts in native plant species. Inadequate nursery hygiene increases the risk of an outbreak and can limit the success of biosecurity efforts as well as damage conservation efforts.
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- 2018
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26. Fungal Planet description sheets: 625-715.
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Crous PW, Wingfield MJ, Burgess TI, Carnegie AJ, Hardy GESJ, Smith D, Summerell BA, Cano-Lira JF, Guarro J, Houbraken J, Lombard L, Martín MP, Sandoval-Denis M, Alexandrova AV, Barnes CW, Baseia IG, Bezerra JDP, Guarnaccia V, May TW, Hernández-Restrepo M, Stchigel AM, Miller AN, Ordoñez ME, Abreu VP, Accioly T, Agnello C, Agustin Colmán A, Albuquerque CC, Alfredo DS, Alvarado P, Araújo-Magalhães GR, Arauzo S, Atkinson T, Barili A, Barreto RW, Bezerra JL, Cabral TS, Camello Rodríguez F, Cruz RHSF, Daniëls PP, da Silva BDB, de Almeida DAC, de Carvalho Júnior AA, Decock CA, Delgat L, Denman S, Dimitrov RA, Edwards J, Fedosova AG, Ferreira RJ, Firmino AL, Flores JA, García D, Gené J, Giraldo A, Góis JS, Gomes AAM, Gonçalves CM, Gouliamova DE, Groenewald M, Guéorguiev BV, Guevara-Suarez M, Gusmão LFP, Hosaka K, Hubka V, Huhndorf SM, Jadan M, Jurjević Ž, Kraak B, Kučera V, Kumar TKA, Kušan I, Lacerda SR, Lamlertthon S, Lisboa WS, Loizides M, Luangsa-Ard JJ, Lysková P, Mac Cormack WP, Macedo DM, Machado AR, Malysheva EF, Marinho P, Matočec N, Meijer M, Mešić A, Mongkolsamrit S, Moreira KA, Morozova OV, Nair KU, Nakamura N, Noisripoom W, Olariaga I, Oliveira RJV, Paiva LM, Pawar P, Pereira OL, Peterson SW, Prieto M, Rodríguez-Andrade E, Rojo De Blas C, Roy M, Santos ES, Sharma R, Silva GA, Souza-Motta CM, Takeuchi-Kaneko Y, Tanaka C, Thakur A, Smith MT, Tkalčec Z, Valenzuela-Lopez N, van der Kleij P, Verbeken A, Viana MG, Wang XW, and Groenewald JZ
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Antarctica : Cadophora antarctica from soil. Australia : Alfaria dandenongensis on Cyperaceae , Amphosoma persooniae on Persoonia sp., Anungitea nullicana on Eucalyptus sp . , Bagadiella eucalypti on Eucalyptus globulus , Castanediella eucalyptigena on Eucalyptus sp., Cercospora dianellicola on Dianella sp., Cladoriella kinglakensis on Eucalyptus regnans , Cladoriella xanthorrhoeae (incl. Cladoriellaceae fam. nov. and Cladoriellales ord. nov.) on Xanthorrhoea sp., Cochlearomyces eucalypti (incl. Cochlearomyces gen. nov. and Cochlearomycetaceae fam. nov.) on Eucalyptus obliqua , Codinaea lambertiae on Lambertia formosa , Diaporthe obtusifoliae on Acacia obtusifolia , Didymella acaciae on Acacia melanoxylon , Dothidea eucalypti on Eucalyptus dalrympleana , Fitzroyomyces cyperi (incl. Fitzroyomyces gen. nov.) on Cyperaceae , Murramarangomyces corymbiae (incl. Murramarangomyces gen. nov., Murramarangomycetaceae fam. nov. and Murramarangomycetales ord. nov.) on Corymbia maculata , Neoanungitea eucalypti (incl. Neoanungitea gen. nov.) on Eucalyptus obliqua , Neoconiothyrium persooniae (incl. Neoconiothyrium gen. nov.) on Persoonia laurina subsp. laurina , Neocrinula lambertiae (incl. Neocrinulaceae fam. nov.) on Lambertia sp., Ochroconis podocarpi on Podocarpus grayae , Paraphysalospora eucalypti (incl. Paraphysalospora gen. nov.) on Eucalyptus sieberi , Pararamichloridium livistonae (incl. Pararamichloridium gen. nov., Pararamichloridiaceae fam. nov. and Pararamichloridiales ord. nov.) on Livistona sp., Pestalotiopsis dianellae on Dianella sp., Phaeosphaeria gahniae on Gahnia aspera , Phlogicylindrium tereticornis on Eucalyptus tereticornis , Pleopassalora acaciae on Acacia obliquinervia , Pseudodactylaria xanthorrhoeae (incl. Pseudodactylaria gen. nov., Pseudodactylariaceae fam. nov. and Pseudodactylariales ord. nov.) on Xanthorrhoea sp., Pseudosporidesmium lambertiae (incl. Pseudosporidesmiaceae fam. nov.) on Lambertia formosa , Saccharata acaciae on Acacia sp., Saccharata epacridis on Epacris sp., Saccharata hakeigena on Hakea sericea , Seiridium persooniae on Persoonia sp., Semifissispora tooloomensis on Eucalyptus dunnii , Stagonospora lomandrae on Lomandra longifolia , Stagonospora victoriana on Poaceae , Subramaniomyces podocarpi on Podocarpus elatus , Sympoventuria melaleucae on Melaleuca sp . , Sympoventuria regnans on Eucalyptus regnans , Trichomerium eucalypti on Eucalyptus tereticornis , Vermiculariopsiella eucalypticola on Eucalyptus dalrympleana , Verrucoconiothyrium acaciae on Acacia falciformis , Xenopassalora petrophiles (incl. Xenopassalora gen. nov.) on Petrophile sp . , Zasmidium dasypogonis on Dasypogon sp., Zasmidium gahniicola on Gahnia sieberiana. Brazil : Achaetomium lippiae on Lippia gracilis , Cyathus isometricus on decaying wood, Geastrum caririense on soil, Lycoperdon demoulinii (incl. Lycoperdon subg. Arenicola ) on soil, Megatomentella cristata (incl. Megatomentella gen. nov.) on unidentified plant, Mutinus verrucosus on soil, Paraopeba schefflerae (incl. Paraopeba gen. nov.) on Schefflera morototoni , Phyllosticta catimbauensis on Mandevilla catimbauensis , Pseudocercospora angularis on Prunus persica , Pseudophialophora sorghi on Sorghum bicolor , Spumula piptadeniae on Piptadenia paniculata. Bulgaria : Yarrowia parophonii from gut of Parophonus hirsutulus . Croatia : Pyrenopeziza velebitica on Lonicera borbasiana. Cyprus : Peziza halophila on coastal dunes. Czech Republic : Aspergillus contaminans from human fingernail. Ecuador : Cuphophyllus yacurensis on forest soil, Ganoderma podocarpense on fallen tree trunk. England : Pilidium anglicum (incl. Chaetomellales ord. nov.) on Eucalyptus sp. France : Planamyces parisiensis (incl. Planamyces gen. nov.) on wood inside a house. French Guiana : Lactifluus ceraceus on soil. Germany : Talaromyces musae on Musa sp. India : Hyalocladosporiella cannae on Canna indica , Nothophoma raii from soil. Italy : Setophaeosphaeria citri on Citrus reticulata , Yuccamyces citri on Citrus limon. Japan : Glutinomyces brunneus (incl. Glutinomyces gen. nov.) from roots of Quercus sp. Netherlands (all from soil): Collariella hilkhuijsenii , Fusarium petersiae , Gamsia kooimaniorum , Paracremonium binnewijzendii , Phaeoisaria annesophieae , Plectosphaerella niemeijerarum , Striaticonidium deklijnearum , Talaromyces annesophieae , Umbelopsis wiegerinckiae , Vandijckella johannae (incl. Vandijckella gen. nov. and Vandijckellaceae fam. nov.), Verhulstia trisororum (incl. Verhulstia gen. nov.). New Zealand : Lasiosphaeria similisorbina on decorticated wood. Papua New Guinea : Pseudosubramaniomyces gen. nov. (based on Pseudosubramaniomyces fusisaprophyticus comb. nov.). Slovakia : Hemileucoglossum pusillum on soil. South Africa : Tygervalleyomyces podocarpi (incl. Tygervalleyomyces gen. nov.) on Podocarpus falcatus. Spain : Coniella heterospora from herbivorous dung, Hymenochaete macrochloae on Macrochloa tenacissima , Ramaria cistophila on shrubland of Cistus ladanifer. Thailand : Polycephalomyces phaothaiensis on Coleoptera larvae, buried in soil. Uruguay : Penicillium uruguayense from soil. Vietnam : Entoloma nigrovelutinum on forest soil, Volvariella morozovae on wood of unknown tree. Morphological and culture characteristics along with DNA barcodes are provided.
- Published
- 2017
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27. Fungal Planet description sheets: 558-624.
- Author
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Crous PW, Wingfield MJ, Burgess TI, Hardy GESJ, Barber PA, Alvarado P, Barnes CW, Buchanan PK, Heykoop M, Moreno G, Thangavel R, van der Spuy S, Barili A, Barrett S, Cacciola SO, Cano-Lira JF, Crane C, Decock C, Gibertoni TB, Guarro J, Guevara-Suarez M, Hubka V, Kolařík M, Lira CRS, Ordoñez ME, Padamsee M, Ryvarden L, Soares AM, Stchigel AM, Sutton DA, Vizzini A, Weir BS, Acharya K, Aloi F, Baseia IG, Blanchette RA, Bordallo JJ, Bratek Z, Butler T, Cano-Canals J, Carlavilla JR, Chander J, Cheewangkoon R, Cruz RHSF, da Silva M, Dutta AK, Ercole E, Escobio V, Esteve-Raventós F, Flores JA, Gené J, Góis JS, Haines L, Held BW, Jung MH, Hosaka K, Jung T, Jurjević Ž, Kautman V, Kautmanova I, Kiyashko AA, Kozanek M, Kubátová A, Lafourcade M, La Spada F, Latha KPD, Madrid H, Malysheva EF, Manimohan P, Manjón JL, Martín MP, Mata M, Merényi Z, Morte A, Nagy I, Normand AC, Paloi S, Pattison N, Pawłowska J, Pereira OL, Petterson ME, Picillo B, Raj KNA, Roberts A, Rodríguez A, Rodríguez-Campo FJ, Romański M, Ruszkiewicz-Michalska M, Scanu B, Schena L, Semelbauer M, Sharma R, Shouche YS, Silva V, Staniaszek-Kik M, Stielow JB, Tapia C, Taylor PWJ, Toome-Heller M, Vabeikhokhei JMC, van Diepeningen AD, Van Hoa N, M VT, Wiederhold NP, Wrzosek M, Zothanzama J, and Groenewald JZ
- Abstract
Novel species of fungi described in this study include those from various countries as follows: Australia : Banksiophoma australiensis (incl. Banksiophoma gen. nov.) on Banksia coccinea , Davidiellomyces australiensis (incl. Davidiellomyces gen. nov.) on Cyperaceae , Didymocyrtis banksiae on Banksia sessilis var . cygnorum , Disculoides calophyllae on Corymbia calophylla , Harknessia banksiae on Banksia sessilis , Harknessia banksiae-repens on Banksia repens , Harknessia banksiigena on Banksia sessilis var . cygnorum , Harknessia communis on Podocarpus sp., Harknessia platyphyllae on Eucalyptus platyphylla , Myrtacremonium eucalypti (incl. Myrtacremonium gen. nov.) on Eucalyptus globulus , Myrtapenidiella balenae on Eucalyptus sp., Myrtapenidiella eucalyptigena on Eucalyptus sp., Myrtapenidiella pleurocarpae on Eucalyptus pleurocarpa , Paraconiothyrium hakeae on Hakea sp., Paraphaeosphaeria xanthorrhoeae on Xanthorrhoea sp., Parateratosphaeria stirlingiae on Stirlingia sp., Perthomyces podocarpi (incl. Perthomyces gen. nov.) on Podocarpus sp., Readeriella ellipsoidea on Eucalyptus sp., Rosellinia australiensis on Banksia grandis , Tiarosporella corymbiae on Corymbia calophylla , Verrucoconiothyrium eucalyptigenum on Eucalyptus sp., Zasmidium commune on Xanthorrhoea sp., and Zasmidium podocarpi on Podocarpus sp. Brazil : Cyathus aurantogriseocarpus on decaying wood, Perenniporia brasiliensis on decayed wood, Perenniporia paraguyanensis on decayed wood, and Pseudocercospora leandrae-fragilis on Leandra fragilis. Chile : Phialocephala cladophialophoroides on human toe nail. Costa Rica : Psathyrella striatoannulata from soil. Czech Republic : Myotisia cremea (incl. Myotisia gen. nov.) on bat droppings. Ecuador : Humidicutis dictiocephala from soil, Hygrocybe macrosiparia from soil, Hygrocybe sangayensis from soil, and Polycephalomyces onorei on stem of Etlingera sp. France : Westerdykella centenaria from soil. Hungary : Tuber magentipunctatum from soil. India : Ganoderma mizoramense on decaying wood, Hodophilus indicus from soil, Keratinophyton turgidum in soil, and Russula arunii on Pterigota alata. Italy : Rhodocybe matesina from soil. Malaysia : Apoharknessia eucalyptorum , Harknessia malayensis , Harknessia pellitae , and Peyronellaea eucalypti on Eucalyptus pellita , Lectera capsici on Capsicum annuum , and Wallrothiella gmelinae on Gmelina arborea. Morocco : Neocordana musigena on Musa sp. New Zealand : Candida rongomai-pounamu on agaric mushroom surface, Candida vespimorsuum on cup fungus surface, Cylindrocladiella vitis on Vitis vinifera , Foliocryphia eucalyptorum on Eucalyptus sp., Ramularia vacciniicola on Vaccinium sp., and Rhodotorula ngohengohe on bird feather surface. Poland : Tolypocladium fumosum on a caterpillar case of unidentified Lepidoptera. Russia : Pholiotina longistipitata among moss. Spain : Coprinopsis pseudomarcescibilis from soil, Eremiomyces innocentii from soil, Gyroporus pseudocyanescens in humus, Inocybe parvicystis in humus, and Penicillium parvofructum from soil. Unknown origin : Paraphoma rhaphiolepidis on Rhaphiolepsis indica. USA : Acidiella americana from wall of a cooling tower, Neodactylaria obpyriformis (incl. Neodactylaria gen. nov.) from human bronchoalveolar lavage, and Saksenaea loutrophoriformis from human eye. Vietnam : Phytophthora mekongensis from Citrus grandis , and Phytophthora prodigiosa from Citrus grandis. Morphological and culture characteristics along with DNA barcodes are provided.
- Published
- 2017
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28. Contemporary Remotely Sensed Data Products Refine Invasive Plants Risk Mapping in Data Poor Regions.
- Author
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Truong TTA, Hardy GESJ, and Andrew ME
- Abstract
Invasive weeds are a serious problem worldwide, threatening biodiversity and damaging economies. Modeling potential distributions of invasive weeds can prioritize locations for monitoring and control efforts, increasing management efficiency. Forecasts of invasion risk at regional to continental scales are enabled by readily available downscaled climate surfaces together with an increasing number of digitized and georeferenced species occurrence records and species distribution modeling techniques. However, predictions at a finer scale and in landscapes with less topographic variation may require predictors that capture biotic processes and local abiotic conditions. Contemporary remote sensing (RS) data can enhance predictions by providing a range of spatial environmental data products at fine scale beyond climatic variables only. In this study, we used the Global Biodiversity Information Facility (GBIF) and empirical maximum entropy (MaxEnt) models to model the potential distributions of 14 invasive plant species across Southeast Asia (SEA), selected from regional and Vietnam's lists of priority weeds. Spatial environmental variables used to map invasion risk included bioclimatic layers and recent representations of global land cover, vegetation productivity (GPP), and soil properties developed from Earth observation data. Results showed that combining climate and RS data reduced predicted areas of suitable habitat compared with models using climate or RS data only, with no loss in model accuracy. However, contributions of RS variables were relatively limited, in part due to uncertainties in the land cover data. We strongly encourage greater adoption of quantitative remotely sensed estimates of ecosystem structure and function for habitat suitability modeling. Through comprehensive maps of overall predicted area and diversity of invasive species, we found that among lifeforms (herb, shrub, and vine), shrub species have higher potential invasion risk in SEA. Native invasive species, which are often overlooked in weed risk assessment, may be as serious a problem as non-native invasive species. Awareness of invasive weeds and their environmental impacts is still nascent in SEA and information is scarce. Freely available global spatial datasets, not least those provided by Earth observation programs, and the results of studies such as this one provide critical information that enables strategic management of environmental threats such as invasive species.
- Published
- 2017
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29. Pathways to false-positive diagnoses using molecular genetic detection methods; Phytophthora cinnamomi a case study.
- Author
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Kunadiya M, White D, Dunstan WA, Hardy GESJ, Andjic V, and Burgess TI
- Subjects
- False Positive Reactions, Real-Time Polymerase Chain Reaction methods, Species Specificity, DNA Primers standards, Phytophthora genetics, Phytophthora isolation & purification, Plant Diseases microbiology, Real-Time Polymerase Chain Reaction standards
- Abstract
Phytophthora cinnamomi is one of the world's most invasive plant pathogens affecting ornamental plants, horticultural crops and natural ecosystems. Accurate diagnosis is very important to determine the presence or absence of this pathogen in diseased and asymptomatic plants. In previous studies, P. cinnamomi species-specific primers were designed and tested using various polymerase chain reaction (PCR) techniques including conventional PCR, nested PCR and quantitative real-time PCR. In all cases, the primers were stated to be highly specific and sensitive to P. cinnamomi. However, few of these studies tested their primers against closely related Phytophthora species (Phytophthora clade 7). In this study, we tested these purported P. cinnamomi-specific primer sets against 11 other species from clade 7 and determined their specificity; of the eight tested primer sets only three were specific to P. cinnamomi. This study demonstrated the importance of testing primers against closely related species within the same clade, and not just other species within the same genus. The findings of this study are relevant to all species-specific microbial diagnosis., (© FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2017
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30. Species from within the Phytophthora cryptogea complex and related species, P. erythroseptica and P. sansomeana, readily hybridize.
- Author
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Safaiefarahani B, Mostowfizadeh-Ghalamfarsa R, Hardy GESJ, and Burgess TI
- Subjects
- Fungal Proteins genetics, Phytophthora classification, Phytophthora cytology, Phytophthora growth & development, Polymorphism, Genetic, Sequence Analysis, DNA, Crosses, Genetic, Phytophthora genetics, Recombination, Genetic
- Abstract
During a study on the phylogenetic relationships between species in the Phytophthora cryptogea complex and related species, Phytophthora erythroseptica and Phytophthora sansomeana, 19 hybrid isolates with multiple polymorphisms in the nuclear sequences were observed. Molecular characterization of hybrids was achieved by sequencing three nuclear (internal transcribed spacers, β-tubulin (TUB), heat shock protein 90) and two mitochondrial (cytochrome c oxidase subunit I (coxI), NADH dehydrogenase subunit I (NADH)) gene regions and cloning of the single-copy nuclear gene, TUB. Based on the molecular studies the hybrid isolates belonged to six distinct groups between P. cryptogea, P. erythroseptica, Phytophthora pseudocryptogea, P. sansomeana, and Phytophthora sp. kelmania. In all cases, only a single coxI and NADH allele was detected and nuclear genes were biparentally inherited, suggesting that the hybrids arose from sexual recombination events. Colony morphology, growth rate, cardinal temperatures, breeding system, and morphology of sporangia, oogonia, oospores, and antheridia were also determined. Some morphological differences between the hybrids and the parental species were noted; however, they were not sufficient to reliably distinguish the taxa and DNA markers from nuclear and mitochondrial genes will to be necessary for their identification. The parental species are all important pathogens of agricultural fields that have been transported globally. With the apparent ease of hybridization within this group there is ample opportunity for virulent hybrids to form, perhaps with extended host ranges., (Copyright © 2016 British Mycological Society. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2016
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31. Optimization of Headspace Solid-Phase Microextraction Conditions for the Identification of Phytophthora cinnamomi Rands.
- Author
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Qiu R, Qu D, Hardy GESJ, Trengove R, Agarwal M, and Ren Y
- Abstract
A robust technique was developed to identify Phytophthora cinnamomi using headspace solid-phase microextraction (HS-SPME) combined with gas chromatography (GC) coupled to a flame ionization detector (FID) for analyzing volatile organic compounds (VOCs). Six fiber types were evaluated and results indicated that the three-phase fiber 50/30 μm divinylbenzene/carboxen/polydimethylsiloxane (DVB/CAR/PDMS) had the highest extraction efficiency for both polar and nonpolar GC columns. The maximum extraction efficiency (equilibrium absorption) was achieved 16 h after fiber exposure in the HS. Absorbed compounds on the fiber were completely desorbed in the GC injector after 5 min at 250°C. Compared with the nonpolar column, the polar column showed optimum separation of VOCs released from P. cinnamomi. Under the optimized HS-SPME and GC/FID conditions, lower detection limits for the four external standards was found to be between 1.57 to 27.36 ng/liter. Relative standard deviations <9.010% showed that the method is precise and reliable. The method also showed good linearity for the concentration range that was analyzed using four standards, with regression coefficients between 0.989 and 0.995, and the sensitivity of the method was 10
4 times greater than that of the conventional HS method. In this study, the VOC profiles of six Phytophthora spp. and one Pythium sp. were characterized by the optimized HS-SPME-GC method. The combination of the VOCs creates a unique pattern for each pathogen; the chromatograms of different isolates of P. cinnamomi were the same and the specific VOC pattern of P. cinnamomi remained consistently independent of the growth medium used. The chromatograms and morphological studies showed that P. cinnamomi released specific VOCs at different stages of colony development. Using the optimized HS-SPME GC method, identification of P. cinnamomi from 15 in vivo diseased soil samples was as high as 100%. Results from this study demonstrate the feasibility of this method for identifying P. cinnamomi and the potential use of this method for physiological studies on P. cinnamomi.- Published
- 2014
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- View/download PDF
32. Headspace Solid-Phase Microextraction and Gas Chromatography-Mass Spectrometry for Analysis of VOCs Produced by Phytophthora cinnamomi.
- Author
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Qiu R, Qu D, Trengove R, Agarwal M, Hardy GESJ, and Ren Y
- Abstract
Volatile organic compounds (VOCs) from Phytophthora cinnamomi-infected lupin seedlings were collected by headspace solid-phase microextraction (HS-SPME). The sampling was done 28 to 44, 52 to 68, and 76 to 92 h after inoculation (HAI). The HS-SPME samples were analyzed by gas chromatography-flame ionization detector (GC-FID) to assess the differences in volatile compounds between the P. cinnamomi-infected lupin seedlings and the control. Three specific peaks were identified after 52 to 68 h with the infected lupin seedlings, at which time there were no visible aboveground symptoms of infection. Subsequently, the VOCs of five different substrates (V8A, PDA, lupin seedlings, soil, and soil + lupin seedlings) infected with P. cinnamomi and the corresponding controls were analyzed by gas chromatography-mass spectrometry (GC/MS). A total of 87 VOCs were identified. Of these, the five most abundant that were unique to all five inoculated substrates included: 4-ethyl-2-methoxyphenol, 4-ethylphenol, butyrolactone, phenylethyl alcohol, and 3-hydroxy-2-butanone. Therefore, these metabolites can be used as markers for the identification of P. cinnamomi in different growing environments. Some VOCs were specific to a particular substrate; for example, 2,4,6-rrimethyl-heptanes, dl-6-methyl-5-hepten-2-ol, dimethyl trisulfide, 6,10-dimethyl- 5,9-undecadien-2-ol, and 2-methoxy-4-vinylphenol were specific to P. cinnamomi + V8A; heptanes and 5-methyl-3-heptaneone were specific to P. cinnamomi + PDA; 3-methyl-1-butanol, ethyl acetate, 2-methyl-propanoic acid, ethyl ester, and ethyl ester 2-methyl-butanoic acid were specific to P. cinnamomi-inoculated lupin seedlings; and benzyl alcohol and 4-ethyl-1, 2-dimethoxybenzene were only detected in the headspace of inoculated soil + lupin seedlings. Results from this investigation have multiple impacts as the volatile organic profiles produced by the pathogen can be utilized as an early warning system to detect the pathogen from contaminated field soil samples. Data from this investigation have also illuminated potential metabolic pathways utilized by the oomycete during infection which may serve as potential targets for the development of specific control strategies.
- Published
- 2014
- Full Text
- View/download PDF
33. A Conceptual Model to Describe the Decline of European Blackberry (Rubus anglocandicans), A Weed of National Significance in Australia.
- Author
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Aghighi S, Fontanini L, Yeoh PB, Hardy GESJ, Burgess TI, and Scott JK
- Abstract
Human activities have had an adverse impact on ecosystems on a global scale and have caused an unprecedented redispersal of organisms, with both plants and pathogens moving from their regions of origin to other parts of the world. Invasive plants are a potential threat to ecosystems globally, and their management costs tens of billions of dollars per annum. Rubus anglocandicans (European blackberry) is a serious invasive species in Australia. Herbicide and cultural control methods are generally inefficient or require multiple applications. Therefore, a biological control program using stem and leaf rust strains is the main option in Australia. However, biological control using rusts has been patchy, as host factors, climate, and weather can alter the impact of the rust at different locations. In 2007, Yeoh and Fontanini noticed that blackberry plants on the banks of the Donnelly and Warren rivers in the southwest of Western Australia were dying in areas that were being regularly monitored for the impact of rust as a biological control agent. The symptoms on blackberry became known as the disease "blackberry decline". Continuous and intensive investigations are required to discover the different biotic and abiotic components associated with specific declines in plant populations. The only agent so far introduced to Australia for the biological control of blackberry is the rust Phragmidium violaceum.
- Published
- 2014
- Full Text
- View/download PDF
34. Managing the Risks of Phytophthora Root and Collar Rot During Bauxite Mining in the Eucalyptus marginata (Jarrah) Forest of Western Australia.
- Author
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Colquhoun IJ and Hardy GESJ
- Published
- 2000
- Full Text
- View/download PDF
35. The potential for the biological control of cavity-spot disease of carrots, caused by Pythium coloratum, by streptomycete and non-streptomycete actinomycetes.
- Author
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El-Tarabily KA, Hardy GESJ, Sivasithamparam K, Hussein AM, and Kurtböke DI
- Abstract
Actinomycetes isolated from carrot rhizosphere were screened for their in vitro and in vivo antagonism to Pythium coloration Vaartaja, a causal agent of cavity-spot disease of carrots (Daucus carata L.). Forty-five streptomycete and non-streptomycete actinomycete isolates were screened for in vitro antagonism in a carrot bioassay. Of these, seven which reduced or prevented lesion formation were identified using cultural, morphological, physiological, biochemical and cell wall characteristics as Streptomyces janthimts, S. cinerochromogenes, Streptoverticilium netropsis, Actinomadura rubra, Actinoplanes philippinensis, Muromonospora carbonaceae, and Streptosporangium albidum. All seven isolates tested produced non-volatile antifungal metabolites, but failed to produce inhibitory volatile compounds. Actinoplanef philippincnsis and M. carbonacea grew epiphytically on the hyphae and oospores of P. eoloratum. The external surface of the oospores of the pathogen was heavily colonized by both hyperparasites, their hyphae were found to coil tightly around the oospore wall, and frequently caused cytoplasmic collapse of oospores. Sporangia of A. philippinensis were often seen to emerge from the colonized hyphae and oospores of P. eoloratum. None of the other actinomycete isolates showed hyperparasitism. All seven isolates significantly reduced the incidence of cavity spot in soil artificially infested with the pathogen in the glasshouse. Streptomyces janlhinus and Stfepto. albidum were the most effective in reducing the disease in inoculated plants. In addition, all the actinomycetes species except Ac. rubra and M. carbonacea, in the presence or absence of the pathogen, significantly (P < 0.05) increased mean fresh root weight compared to the treatment which included P. thorium only. This study shows that these actinomycetes have considerable potential for future use as biocontrol agents of cavity spot under natural field conditions. This is the first report of cavity-spot disease of carrots being controlled by microbial antagonists, and is the first report of non-streptomycete actinomycetes to control a Pythium disease.
- Published
- 1997
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36. The effectiveness of ectomycorrhizal fungi in increasing the growth of Eucalyptus globulus Labill. in relation to root colonization and hyphal development in soil.
- Author
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Thomson BD, Grove TS, Malajczuk N, and Hardy GESJ
- Abstract
Forty-seven different isolates of ectomycorrhizal fungi, from the different genera, were screened for their effectiveness in increasing the growth of Eucalyptus globulin La hi 11. where supply of P is deficient. Plants were grown in a P-delicient sand, in pots, in a temperature- control led glasshouse. Seedlings we re harvested 6-S and K7 d after planting, and were assessed for dry matter production and mywirrhizal colonization. Selected treatments were also assessed for P concentrations in the plant and hyphal development in the soil. Dry weights of inoculated plants ranged from 50 to 350% of the dry Weights of uninoculated plants. Growth increases in response to ectorriycorrhizal inoculation corresponded with increased P uptake by the plant.'Early'colonizing fungal species (Descolea maculata, Hebeloma westraliens, Laccaria laccata and Pisolithus tinctorius) were generally more effective in increasing plant growth than'late'colonizing species (Cortinarius spp. and Hyutenmgium spp.), although there was also variation in effectiveness among isolates of the same fungal species. Plant dry weights were positively correlated (r
2 = 0·79-0·84) with the length of colonized root, indicating that fungi which colonized roots extensively were The most effective in increasing plant growth. For some fungi, however, plant growth responses to inoculation were not related to colonized root length. These responses could not.be related to the development of hyphae in soil by the mycorrhizal fungi.- Published
- 1994
- Full Text
- View/download PDF
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