1. Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor
- Author
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Wang, Zhaoming, Mcglynn, Katherine A, Rajpert De Meyts, Ewa, Bishop, D. Timothy, Chung, Charles C, Dalgaard, Marlene D, Greene, Mark H, Gupta, Ramneek, Grotmol, Tom, Haugen, Trine B, Karlsson, Robert, Litchfield, Kevin, Mitra, Nandita, Nielsen, Kasper, Pyle, Louise C, Schwartz, Stephen M, Thorsson, Vésteinn, Vardhanabhuti, Saran, Wiklund, Fredrik, Turnbull, Clare, Chanock, Stephen J, Kanetsky, Peter A, Nathanson, Katherine L, Testicular Cancer Consortium: McGlynn KA, Rajpert De Meyts, E, Bishop, Dt, Greene, Mh, Gupta, R, Grotmol, T, Haugen, Tb, Schwartz, Sm, Wiklund, F, Turnbull, C, Chanock, Sj, Kanetsky, Pa, Nathanson, Kl, Ferlin, Alberto, Gietema, Ja, Cortessis, V, Hauser, R, Hildebrandt, M, Kiemeney, La, Kubisch, C, Lessel, D, Rafnar, T, Richiardi, L, Skotheim, R, Zheng, T., Guided Treatment in Optimal Selected Cancer Patients (GUTS), and Damage and Repair in Cancer Development and Cancer Treatment (DARE)
- Subjects
0301 basic medicine ,Male ,Genome-wide association study ,Disease ,VARIANTS ,Genome-wide association studies ,DISEASE ,0302 clinical medicine ,Genotype ,FAMILIAL RISK ,Genetics ,HERITABILITY ,Chromosome Mapping ,Neoplasms, Germ Cell and Embryonal ,3. Good health ,030220 oncology & carcinogenesis ,CARCINOMA IN-SITU ,Urological cancers Radboud Institute for Health Sciences [Radboudumc 15] ,EXPRESSION ,Adult ,Genetic Markers ,Risk ,SUSCEPTIBILITY LOCI ,Testicular Germ Cell Tumor ,RELATIVES ,Meta-analysises ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Young Adult ,Testicular Neoplasms ,medicine ,Humans ,Computer Simulation ,Genetic Predisposition to Disease ,Testicular cancer ,Genetic association ,Family Health ,Chromosomes, Human, X ,Haplotype ,Computational Biology ,medicine.disease ,COMPONENT ,030104 developmental biology ,Haplotypes ,Genetic marker ,CANCER INCIDENCE ,Testicular germ cell tumors ,Genome-Wide Association Study - Abstract
Item does not contain fulltext The international Testicular Cancer Consortium (TECAC) combined five published genome-wide association studies of testicular germ cell tumor (TGCT; 3,558 cases and 13,970 controls) to identify new susceptibility loci. We conducted a fixed-effects meta-analysis, including, to our knowledge, the first analysis of the X chromosome. Eight new loci mapping to 2q14.2, 3q26.2, 4q35.2, 7q36.3, 10q26.13, 15q21.3, 15q22.31, and Xq28 achieved genome-wide significance (P < 5 x 10-8). Most loci harbor biologically plausible candidate genes. We refined previously reported associations at 9p24.3 and 19p12 by identifying one and three additional independent SNPs, respectively. In aggregate, the 39 independent markers identified to date explain 37% of father-to-son familial risk, 8% of which can be attributed to the 12 new signals reported here. Our findings substantially increase the number of known TGCT susceptibility alleles, move the field closer to a comprehensive understanding of the underlying genetic architecture of TGCT, and provide further clues to the etiology of TGCT.
- Published
- 2016