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The Bryaceae are a large cosmopolitan family of mosses containing genera of considerable taxonomic difficulty. Phylogenetic relationships within the family were inferred using data from chloroplast DNA sequences (rps4 and trnL-trnF region). Parsimony and maximum likelihood optimality criteria, and Bayesian phylogenetic inference procedures were employed to reconstruct relationships. The genera Bryum and Brachymenium are not monophyletic groups. A clade comprising Plagiobryum, Acidodontium, Mielichhoferia macrocarpa, Bryum sects. Bryum, Apalodictyon, Limbata, Leucodontium, Caespiticia, Capillaria (in part: sect. Capillaria), and Brachymenium sect. Dicranobryum, is well supported in all analyses and represents a major lineage within the family. Section Dicranobryum of Brachymenium is more closely related to section Bryum than to the other sections of Brachymenium, as are Mielichhoferia macrocarpa and M. himalayana. Species of Acidodontium form a clade with Anomobryum julaceum. The grouping of species with a rosulate gametophytic growth form suggests the presence of a 'rosulate' clade similar in circumscription to the genus Rosulabryum. Mielichhoferia macrocarpa and M. himalayana are transferred to Bryum as B. porsildii and B. caucasicum, respectively.

Evolutionary relationships of mosses are still poorly understood, with family, order, and subclass circumscription and relationships remaining especially obscure. Over the past decade, a considerable body of data has accumulated, including information on morphological, developmental, anatomical, and ultrastructural characteristics, as well as nucleotide sequences for a number of nuclear and plastid genes. We have combined data from these different sources to provide an overview of the relationships of the major lineages of mosses. We analyzed a data set that includes 33 moss species and ten outgroup taxa drawn from the liverworts, hornworts, and vascular plants. Molecular data consisted of nucleotide sequences from four DNA regions, (rbcL, trnL-trnF, rps4 and 18S). Morphological data included 41 characters of which many were derived from published anatomical and ultra-structural studies. Combining morphological and molecular data in the analyses showed that mosses, including Sphagnum, Takakia, Andreaea and Andreaeobryum, form a monophyletic group, provided improved resolution of higher level relationships, and further insight into evolutionary patterns in morphology. The authors gratefully acknowledge funding provided by the Museum Research Fund (MRF S007204) (to A. E. Newton (PI) & C. J. Cox), and the Green Plant Phylogeny Research Co-ordination Group (Deep Green): DOE/NSF/ USDA Panel on Collaborative Research in Plant Biology ‘‘The Origins and Phylogeny of Green Plants: A Research Co-ordination Group,’’ USDA grant 94-37105-0713, University of Tulsa, 1994–1999, PIs M. A. Buchheim, B. D. Mishler, and R. L. Chapman.

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WOS: 000348594500007, …, Institute of Environmental Technologies - 'Research and Development for Innovations' Operational Programme [CZ.1.05/2.1.00/03.0100]; Structural Funds of the European Union; state budget of the Czech Republic; National Feasibility Programme I of the Czech Republic [LO1208]; SYNTHESYS project [FR-TAF-3686]; University of Ostrava [SGS27/PRF/2014]; Polish National Centre of Science [N N 303 469 338]; Institute of Botany of the Polish Academy of Sciences; Institute of Biology Bucharest of the Romanian Academy [RO1567-IBB03/2014]; Natural Environment Research Council; Scientific and Technological Research Council of Turkey (TUBITAK) [111T359]; Spanish Ministerio de Economia y Competitividad (MINECO); Flora Briofitica Iberica from MINECO [CGL2009-09530]; MINECO; Spanish 'Ministerio de Ciencia e Innovacion' [CGL2010-15959, CGL2009-07323]; FEDER; 'Ramon y Cajal' Subprogram (MICINN-European Social Fund); 'Ministerio de Economia y Competitividad' [CGL2012-30721]; MOVECLIM project (ANR under the Net-Biome call); RSF [14-14-00903, 14-24-00037]; RFBR [13-04-01427, 12-04-01476]; 'The Survey of new and unrecorded taxa in vascular plants (NIBR)' - Ministry of Environment of the Korean Government [2013-02-001]; Natural Environment Research Council [bas0100025], The contribution by V. Plasek is part of a research project of the Institute of Environmental Technologies, reg. no. CZ.1.05/2.1.00/03.0100, supported by the 'Research and Development for Innovations' Operational Programme, and financed by the Structural Funds of the European Union and by the state budget of the Czech Republic, Project LO1208 of the National Feasibility Programme I of the Czech Republic, and SYNTHESYS project FR-TAF-3686. The contribution by L. Cihal is a part of grant project SGS27/PRF/2014 financed by University of Ostrava. The contributions by R. Ochyra have been financially supported by the Polish National Centre of Science through grant no. N N 303 469 338 and, in part, by the statutory fund of the Institute of Botany of the Polish Academy of Sciences. He also thanks Helen J. Peat, Cambridge, for kindly allowing him to study the herbarium collections from AAS. S. Stefanut, acknowledges the support by project no. RO1567-IBB03/2014 through the Institute of Biology Bucharest of the Romanian Academy. J. Vana and K. K. Newsham acknowledge the logistics support that was provided by the British Antarctic Survey's Operations Group, officers and crew of the RRS Ernest Shackleton and staff at King Edward Point research station, and thank Helen J. Peat for the loan of AAS herbarium specimens. Funding was provided by the Natural Environment Research Council. All are gratefully acknowledged.; Peter Szucs and Andras Bidlo would like to thank Peter Erzberger for examining the specimen of Campylopus introflexus, and Gyorgy Pulger for his assistance in fieldwork. Tulay Ezer and Recep Kara are indebted to the Scientific and Technological Research Council of Turkey (TUBITAK) for financial support (Project Code: 111T359).; M. J. Gil-Lopez, F. Puche, and J. G. Segarra-Moragues thank H. Kharbouch (SahaTours), F. Pacheco, J. P. Peralta, and F. Rivera for their help in field work. M. J. Gil-Lopez benefited from a FPU PhD grant from the Spanish Ministerio de Economia y Competitividad (MINECO). F. Puche acknowledges funds from project CGL2009-09530, Flora Briofitica Iberica from MINECO. J. G. Segarra-Moragues benefited from a 'Ramon y Cajal' post-doctoral contract from MINECO. Juan Larrain and Amalia B. Biasuso thank Reinaldo Vargas and Gotz Palfner for their company in the field. Marta Alonso and David Long acknowledge the financial support of the Spanish 'Ministerio de Ciencia e Innovacion' (projects CGL2010-15959 co-financed by FEDER) and 'Ramon y Cajal' Subprogram (MICINN-European Social Fund). We also thank Maria J. Cano and Juan A. Jimenez for their contribution to this work.; D. Rios, M. T. Gallego, and J. Guerra are grateful to Len Ellis for organising the loan of specimens and assistance during the visit of the first author to the BM herbarium. This research was carried out with financial support from the Spanish 'Ministerio de Ciencia e Innovacion' and 'Ministerio de Economia y Competitividad' [Projects CGL2009-07323 and CGL2012-30721, respectively].; Terry Hedderson is grateful to Jean-Yves Meyer, Ravahere Tuputuari, Claudine Ah-Peng, and Oliver Flores for field assistance and companionship and to the MOVECLIM project (ANR under the Net-Biome call) for funding the fieldwork on Tahiti. The study by E.V. Sofronova was supported by RSF (project no. 14-14-00903), that by Y.S. Mamontov was partly supported by RFBR (project no. 13-04-01427 and 12-04-01476), and that by A. D. Potemkin was supported by RSF (project no. 14-24-00037). The research by Yoon Young-Jun, Benito C. Tan and Byung-Yun Sun was supported by grants from 'The Survey of new and unrecorded taxa in vascular plants (NIBR No. 2013-02-001)' funded by the Ministry of Environment of the Korean Government.