12 results on '"Hee Yun Park"'
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2. Functional expression of recombinant hybrid enzymes composed of bacterial and insect’s chitinase domains in E. coli
- Author
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Min Jae Kim, Aron Paek, Hee Yun Park, Je Geun Yoo, and Seong Eun Jeong
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0106 biological sciences ,0301 basic medicine ,Signal peptide ,DNA, Complementary ,Bacillus thuringiensis ,Bioengineering ,Moths ,01 natural sciences ,Applied Microbiology and Biotechnology ,Biochemistry ,Substrate Specificity ,law.invention ,Open Reading Frames ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,Chitin ,law ,Glucosamine ,Chitin binding ,010608 biotechnology ,TIM barrel ,Escherichia coli ,Animals ,chemistry.chemical_classification ,biology ,Chitinases ,fungi ,Recombinant Proteins ,030104 developmental biology ,Enzyme ,chemistry ,Chitinase ,Recombinant DNA ,biology.protein ,Insect Proteins ,Protein Binding ,Biotechnology - Abstract
To elucidate the functional alteration of the recombinant hybrid chitinases composed of bacterial and insect's domains, we cloned the constitutional domains from chitinase-encoding cDNAs of a bacterial species, Bacillus thuringiensis (BtChi) and a lepidopteran insect species, Mamestra brassicae (MbChi), respectively, swapped one's leading signal peptide (LSP) - catalytic domain (CD) - linker region (LR) (LCL) with the other's chitin binding domain (ChBD) between the two species, and confirmed and analyzed the functional expression of the recombinant hybrid chitinases and their chitinolytic activities in the transformed E. coli strains. Each of the two recombinant cDNAs, MbChi's LCL connected with BtChi's ChBD (MbLCL-BtChBD) and BtChi's LCL connected with MbChi's ChBD (BtLCL-MbChBD), was successfully introduced and expressed in E. coli BL21 strain. Although both of the two hybrid enzymes were found to be expressed by SDS-PAGE and Western blotting, the effects of the introduced genes on the chitin metabolism appear to be dramatically different between the two transformed E. coli strains. BtLCL-MbChBD remarkably increased not only the cell proliferation rate, extracellular and cellular chitinolytic activity, but also cellular glucosamine and N-acetylglucosamine levels, while MbLCL-BtChBD showed about the same profiles in the three tested subjects as those of the strains transformed with each of the two native chitinases, indicating that a combination of the bacterial CD of TIM barrel structure with characteristic six cysteine residues and insect ChBD2 including a conserved six cysteine-rich region (6C) enhances the attachment of the enzyme molecule to chitin compound by MbChBD, and so increases the catalytic efficiency of bacterial CD.
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- 2020
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3. Functional expression and structural characterization of ORF cDNA encoding chitinase of the beet armyworm, Spodoptera exigua (Lepidoptera: Noctuidae)
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Hee Yun Park, Seong Eun Jeong, and Aron Paek
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biology ,fungi ,Spodoptera ,biology.organism_classification ,Open reading frame ,chemistry.chemical_compound ,Biochemistry ,Chitin ,chemistry ,Insect Science ,Complementary DNA ,Botany ,Exigua ,Chitinase ,biology.protein ,Peritrophic matrix ,Peptide sequence - Abstract
Chitin is an important component of the exoskeleton and peritrophic matrix in insects. Its bio-degradation is initiated by the endo-splitting chitinase. We cloned an ORF cDNA encoding chitinase from the last instar larva of the beet armyworm, Spodoptera exigua (Lepidoptera: Noctuidae), into E. coli to confirm its functionality. Its amino acid sequence was compared with previously described lepidopteran chitinases. S. exigua chitinase expression enhanced cell growth approx. 1.5 fold in transformed E. coli than in the wild strain in a 1% colloidal chitin-containing medium with insufficient regular nutrients. Compared with the wild strain, the two intracellular chitin degradation derivatives, glucosamine and N -acetylglucosamine, increased approx. 5.8 and 1.5 fold, respectively, and extracellular chitinase activity in the transformed strain was about 1.6 fold higher. The ORF of S. exigua chitinase-encoding cDNA including stop codon was composed of 1674 bp nucleotides and the calculated molecular weight of the deduced 557 amino acid residues was about 62.6 kDa. The ORF consisted of an N -terminal leading signal peptide (AA 1–20), a catalytic domain (AA 21–392), a linker region (AA 393–493), and a C -terminal chitin-binding domain (AA 494–557) showing a typical molting fluid chitinase structure. Phylogenetic analysis determined that all 5 noctuid chitinases were grouped together, while two bombycid enzymes and one tortricid enzyme mapped together in one lineage. In the noctuid group, the sub-lineages reflected their taxonomic relationships at the Genus level.
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- 2012
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4. Molecular cloning and functional expression of chitinase-encoding cDNA from the cabbage moth, Mamestra brassicae
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Hee Yun Park, Aron Paek, and Seong Eun Jeong
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Signal peptide ,DNA, Complementary ,Molecular Sequence Data ,Chitin ,Cell Growth Processes ,Moths ,Protein Sorting Signals ,Molecular cloning ,Biology ,Open Reading Frames ,chemistry.chemical_compound ,Catalytic Domain ,Complementary DNA ,Escherichia coli ,Animals ,Amino Acid Sequence ,Peritrophic matrix ,Cloning, Molecular ,Molecular Biology ,Peptide sequence ,Glucosamine ,Chitinases ,fungi ,Articles ,Cell Biology ,General Medicine ,Molecular biology ,Open reading frame ,Biochemistry ,chemistry ,Larva ,Chitinase ,biology.protein ,Insect Proteins ,Sequence Alignment ,Protein Binding - Abstract
Chitinase is a rate-limiting and endo-splitting enzyme involved in the bio-degradation of chitin, an important component of the cuticular exoskeleton and peritrophic matrix in insects. We isolated a cDNA-encoding chitinase from the last larval integument of the cabbage moth, Mamestra brassicae (Lepidoptera; Noctuidae), cloned the ORF cDNA into E. coli to confirm its functionality, and analyzed the deduced amino acid sequence in comparison with previously described lepidopteran chitinases. M. brassicae chitinase expressed in the transformed E. coli cells with the chitinase-encoding cDNA enhanced cell proliferation to about 1.6 times of the untransformed wild type strain in a colloidal chitin-including medium with only a very limited amount of other nutrients. Compared with the wild type strain, the intracellular levels of chitin degradation derivatives, glucosamine and N-acetylglucosamine were about 7.2 and 2.3 times higher, respectively, while the extracellular chitinase activity was about 2.2 times higher in the transformed strain. The ORF of M. brassicae chitinase-encoding cDNA consisted of 1686 nucleotides (562 amino acid residues) except for the stop codon, and its deduced amino acid composition revealed a calculated molecular weight of 62.7 and theoretical pI of 5.3. The ORF was composed of N-terminal leading signal peptide (AA 1-20), catalytic domain (AA 21–392), linker region (AA 393–498), and C-terminal chitin-binding domain (AA 499–562) showing its characteristic structure as a molting fluid chitinase. In phylogenetic analysis, the enzymes from 6 noctuid species were grouped together, separately from a group of 3 bombycid and 1 tortricid enzymes, corresponding to their taxonomic relationships at both the family and genus levels.
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- 2011
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5. Localization of Three Types of the Inositol 1,4,5-Trisphosphate Receptor/Ca2+ Channel in the Secretory Granules and Coupling with the Ca2+ Storage Proteins Chromogranins A and B
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Hee Yun Park, Seung Ho So, Yang Hoon Huh, Seung Hyun Yoo, Hyung Seon Park, Moon Kyung Kang, and Young Soo Oh
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Gene isoform ,endocrine system ,Molecular Sequence Data ,Receptors, Cytoplasmic and Nuclear ,Biology ,Cytoplasmic Granules ,Biochemistry ,Mice ,chemistry.chemical_compound ,Antibody Specificity ,Chromogranins ,Animals ,Inositol 1,4,5-Trisphosphate Receptors ,Protein Isoforms ,Inositol ,Amino Acid Sequence ,Receptor ,Molecular Biology ,Secretory granule membrane ,Granule (cell biology) ,3T3 Cells ,Cell Biology ,Immunogold labelling ,Inositol trisphosphate receptor ,Immunohistochemistry ,Precipitin Tests ,chemistry ,COS Cells ,Chromogranin A ,Cattle ,Calcium Channels ,Subcellular Fractions - Abstract
Although the role of secretory granules as the inositol 1,4,5-trisphosphate (IP(3))-sensitive intracellular Ca(2+) store and the presence of the IP(3) receptor (IP(3)R)/Ca(2+) channel on the secretory granule membrane have been established, the identity of the IP(3)R types present in the secretory granules is not known. We have therefore investigated the presence of different types of IP(3)R in the secretory granules of bovine adrenal medullary chromaffin cells using immunogold electron microscopy and found the existence of all three types of IP(3)R in the secretory granules. To determine whether these IP(3)Rs interact with CGA and CGB, each IP(3)R isoform was co-transfected with CGA or CGB into NIH3T3 or COS-7 cells, and the expressed IP(3)R isoform and CGA or CGB were co-immunoprecipitated. From these studies it was shown that all three types of IP(3)R form complexes with CGA and CGB in the cells. To further confirm whether the IP(3)R isoforms and CGA and CGB form a complex in the secretory granules the potential interaction between all three isoforms of IP(3)R and CGA and CGB was tested by co-immunoprecipitation experiments of the mixture of secretory granule lysates and the granule membrane proteins. The three isoforms of IP(3)R were shown to form complexes with CGA and CGB, indicating the complex formation between the three isoforms of IP(3)R and CGA and CGB in the secretory granules. Moreover, the pH-dependent Ca(2+) binding property of CGB was also studied using purified recombinant CGB, and it was shown that CGB bound 93 mol of Ca(2+)/mol with a dissociation constant (K(d)) of 1.5 mm at pH 5.5 but virtually no Ca(2+) at pH 7.5. The high capacity, low affinity Ca(2+)-binding property of CGB at pH 5.5 is comparable with that of CGA and is in line with its role as a Ca(2+) storage protein in the secretory granules.
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- 2001
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6. Insect ornithine decarboxylase (ODC) complements SPE1 knock-out of yeast Saccharomyces cerevisiae
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Gil Seob Kim, Hee Yun Park, Seong Eun Jeong, Soon Yong Choi, and Aron Paek
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Saccharomyces cerevisiae Proteins ,genetic structures ,Saccharomyces cerevisiae ,Molecular Sequence Data ,Spermine ,Cell Growth Processes ,Spodoptera ,Ornithine Decarboxylase ,Ornithine decarboxylase ,chemistry.chemical_compound ,Gene Knockout Techniques ,Transformation, Genetic ,Acetyltransferases ,Animals ,Molecular Biology ,Ornithine decarboxylase antizyme ,biology ,fungi ,Biogenic Polyamines ,Cell Biology ,General Medicine ,Sequence Analysis, DNA ,biology.organism_classification ,Bombyx ,Molecular biology ,Yeast ,Spermidine ,chemistry ,Biochemistry ,Putrescine ,Insect Proteins ,Polyamine ,Sequence Alignment - Abstract
Ornithine decarboxylase (ODC) is a rate-limiting enzyme in the biosynthesis of polyamines, which are essential for cell growth, differentiation, and proliferation. This report presents the characterization of an ODC-encoding cDNA (SlitODC) isolated from a moth species, the tobacco cutworm, Spodoptera litura (Lepidoptera); its expression in a polyamine-deficient strain of yeast, S. cerevisiae; and the recovery in polyamine levels and proliferation rate with the introduction of the insect enzyme. SlitODC encodes 448 amino acid residues, 4 amino acids longer than B. Mori ODC that has 71% identity, and has a longer C-terminus, consistent with B. mori ODC, than the reported dipteran enzymes. The null mutant yeast strain in the ODC gene, SPE1, showed remarkably depleted polyamine levels; in putrescine, spermidine, and spermine, the levels were > 7, > 1, and > 4%, respectively, of the levels in the wild-type strain. This consequently caused a significant arrest in cell proliferation of > 4% of the wild-type strain in polyaminefree media. The transformed strain, with the substituted SlitODC for the deleted endogenous ODC, grew and proliferated rapidly at even a higher rate than the wild-type strain. Furthermore, its polyamine content was significantly higher than even that in the wild-type strain as well as the spe1-null mutant, particularly with a very continuously enhanced putrescine level, reflecting no inhibition mechanism operating in the putrescine synthesis step by any corresponding insect ODC antizymes to SlitODC in this yeast system.
- Published
- 2009
7. An Elastic Display Method for Visulaizing and Navigating a Large Quantity of Alarma in a Control Room of a Nuclear Power Plant
- Author
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Sang Moon Suh, In-Soo Koo, Geun Ok Park, Gui Sook Jang, and Hee Yun Park
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Engineering ,business.industry ,Real-time computing ,Control room ,Upset ,Task (project management) ,law.invention ,Transport engineering ,ALARM ,law ,visual_art ,Nuclear power plant ,visual_art.visual_art_medium ,Tile ,business ,Annunciator panel - Abstract
In a conventional control room of a Nuclear Powre Plant, a great number of tiled alarms are generated especially under a plant upset condition. As its conventional control room evolves into an advanced one, an annunciator-based tile display for an alarm status is required to be removed and replaced by a computer-based tile display. Where this happens, it becomes a bothering task for plant operators to navigate and acknowledge tiled alarm information, because it places an additional burden on them. In this them. In this paper, a display method, Elastic Tile Display, was proposed, which can be use to visualize and navigate effectively a large quantity of tiled alarms. We expect the method to help operators navigate alarms with a little cost of their attention resources and acknowledge them in a timely manner.
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- 2007
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8. An abundant acyl-CoA (Delta9) desaturase transcript in pheromone glands of the cabbage moth, Mamestra brassicae, encodes a catalytically inactive protein
- Author
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Aron Paek, Hee Yun Park, Seong Eun Jeong, Myung Sook Kim, and Douglas C. Knipple
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DNA, Complementary ,Auxotrophy ,Saccharomyces cerevisiae ,Molecular Sequence Data ,Mutation, Missense ,Moths ,Biochemistry ,Polymerase Chain Reaction ,Pheromones ,Acyl-CoA ,chemistry.chemical_compound ,Complementary DNA ,Animals ,Amino Acid Sequence ,Molecular Biology ,Peptide sequence ,chemistry.chemical_classification ,Genetics ,biology ,Sequence Analysis, DNA ,biology.organism_classification ,Amino acid ,chemistry ,Insect Science ,Sex pheromone ,Mutagenesis, Site-Directed ,Pheromone ,Female ,Stearoyl-CoA Desaturase - Abstract
The principal sex pheromone component produced by females of the cabbage moth, Mamestra brassicae , is derived from the monounsaturated fatty acid, Z 11-16:1, whereas two additional trace components are derived from E 11-16:1 and Z 9-16:1. This report presents the isolation and analysis of cDNAs encoding pheromone gland-specific acyl-CoA desaturases implicated in the production of these unsaturated fatty acids (UFAs). Comparisons of the encoded amino acid sequences of four cDNA fragments isolated by degenerate PCR from cabbage moth pheromone glands established their orthology with previously characterized noctuid desaturases as follows: Mbra LPAQ, belonging to the pheromone gland-specific LPAQ desaturase lineage having Δ11 regioselectivity, Mbra KPSE-a and Mbra KPSE-b, belonging to the pheromone gland-specific KPSE desaturase lineage having Δ9 regioselectivity and a substrate preference for palmitic acid (16:0) over oleic acid (18:0), and Mbra NPVE, belonging to the NPVE desaturase lineage having Δ9 regioselectivity and a substrate preference 18:0>16:0. Full-length cDNAs corresponding to the two most abundantly expressed pheromone gland-specific desaturase transcripts, Mbra LPAQ and Mbra KPSE-b, were isolated and assayed for their ability to genetically complement the UFA auxotrophy of a desaturase-deficient ole1 strain of Saccharomyces cerevisiae . The Mbra LPAQ desaturase restored UFA prototrophy and GC–MS analysis identified Z 11-16:1 and Z 11-18:1 as the predominant UFAs produced. Surprisingly, Mbra KPSE-b failed to complement the ole1 mutation, although it shares >98% amino acid sequence similarity with other noctuid KPSE desaturases that do. Site-directed mutagenesis of either or both of two nonconservative amino acid substitutions restored functionality to the Mbra KPSE-b protein, although GC–MS analysis revealed that neither reversion resulted in the characteristic KPSE substrate preference for 16:0.
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- 2007
9. Purification, pH-dependent conformational change, aggregation, and secretory granule membrane binding property of secretogranin II (chromogranin C)
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Seung Hyun Yoo, Soon Hee You, Seung Ho So, Woo Bok Lee, and Hee Yun Park
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chemistry.chemical_classification ,endocrine system ,Conformational change ,Chemistry ,Protein Conformation ,Secretory Vesicles ,Granule (cell biology) ,Chromogranins ,Proteins ,Inositol trisphosphate receptor ,Hydrogen-Ion Concentration ,Biochemistry ,Adrenal Medulla ,Native state ,Chromatography, Gel ,Storage protein ,Animals ,Cattle ,Electrophoresis, Gel, Two-Dimensional ,Secretory granule membrane ,Biogenesis ,Protein Binding - Abstract
Secretogranin II (SgII) is one of the three major proteins, the other two being chromogranins A (CGA) and B (CGB), of secretory granules of neuroendocrine cells. The Ca(2+) storage proteins CGA and CGB not only are coupled to the IP(3) receptor (IP(3)R)/Ca(2+) channels that exist on the secretory granule membrane but also are known to play key roles in secretory granule biogenesis. Unlike the better studied CGA and CGB, secretogranin II has never been completely purified in the native state and studied. We have therefore purified SgII in native form from bovine adrenal medulla and subjected it to biochemical characterization. Secretogranin II consisted of largely beta-sheet and random coil structures with a low level of alpha-helicity. Like CGA and CGB, it also underwent pH-dependent conformational changes, showing 9.5% alpha-helicity at pH 7.5 and 17.0% alpha-helicity at pH 5.5. Secretogranin II also underwent acidic pH- and Ca(2+)-dependent aggregation, and it was approximately 8-fold more sensitive than CGA to Ca(2+) in its pH-dependent aggregation but was 8-fold less sensitive than CGB. Further, similar to CGA and CGB that had interacted with the secretory granule membrane at the intragranular pH 5.5, SgII also interacted with the secretory granule membrane at pH 5.5 and dissociated from it at near-physiological pH 7.5, implying similar roles of SgII in the cell as those of CGA and CGB. Secretogranin II hence appeared to actively participate in secretory granule biogenesis as has been proposed for CGA and CGB.
- Published
- 2002
10. Cloning and Functional Expression of cDNA Encoding Pheromone Δ9 Acyl‐CoA Desaturase of the Tobacco Cutworm, Spodoptera litura (Lepidoptera: Noctuidae)
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Hee Yun, PARK, primary and Seong Eun, JEONG, additional
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- 2005
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11. An Elastic Display Method for Visulaizing and Navigating a Large Quantity of Alarma in a Control Room of a Nuclear Power Plant.
- Author
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Sobh, Tarek, Elleithy, Khaled, Sang Moon Suh, Gui Sook Jang, Geun Ok Park, Hee Yun Park, and In Soo Koo
- Abstract
Copyright of Advances in Systems, Computing Sciences & Software Engineering is the property of Springer eBooks and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2006
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12. Cloning and Functional Expression of cDNA Encoding Pheromone Δ9 Acyl‐CoA Desaturase of the Tobacco Cutworm, Spodoptera litura(Lepidoptera: Noctuidae)
- Author
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Hee Yun, PARK and Seong Eun, JEONG
- Abstract
ABSTRACT A cDNA encoding pheromone Δ9 acyl‐CoA desaturase, SlitKPSE was isolated from sex pheromone gland of the tobacco cutworm, Spodoptera liturawhich uses a diene unsaturated fatty acid (UFA) derivative, Z9E11‐14 : 2 as a major pheromone component. The fulllength open reading frame coding region of SlitKPSE was inserted in a yeast shuttle vector, YEpOLEX, and two kinds of yeast (Saccharomyces cerevisiae) mutant strains were transformed with the recombinant vector. In the desaturase‐deficient ole1 strain, SlitKPSE expressed a complementary enzyme producing two kinds of diene UFAs, more 9–16 : 1 and less 9–18 : 1 at a ratio of 1 : 0.74 exhibiting a typical functional characteristics as one of the pheromone Δ9 acyl‐CoA desaturase lineage group, KPSE, but no Δ9 14C monoene was detectable because of too small amount of 14C saturated fatty acid precursor to be reliably used by SlitKPSE in the transformed cells. However, the another transformed yeast strain elo1 which is deficient of elongase 1, an enzyme converting 14C to 16C hydrocarbon substrate, was supplemented with some myristic acid (14 : 0) in the medium, and produced a significant amount of 9–14 : 1 in due to a much enhanced level of the 14C substrate suggesting that SlitKPSE may be responsible for making the Δ9 double bond on the diene pheromone component.
- Published
- 2005
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