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1. Changes in natural land cover have been pronounced in the last 12,000 years, and land use has intensified in the last century owing to anthropogenic pressures on landscapes. This trend has led to concomitant changes in the abiotic templates and biotic communities of different ecosystems embedded in a landscape. 2. Deciphering the role of land use is key to understand ecological change in boreal landscapes. These landscapes are characterized by large numbers of lakes that have been affected by various anthropogenic factors, of which land use has considerable direct and indirect effects on lakes. 3. In this review, we focus on land use impacts on boreal lakes in a historical perspective. We will consider lake features related to abiotic conditions, biological communities and ecosystem services, and provide potential solutions for planning lake management and conservation in a landscape setting. More specifically, we propose a novel way to characterize lake abiotic, biotic and ecosystem service features by applying the alpha, beta and gamma concept used widely in ecological research. 4. Finally, we highlight situations where this approach could be a valuable addition to existing means to identify lakes that should be reserved for ecosystem services (‘lake-sharing’) and those that are vital for protecting aquatic biodiversity (‘lake-sparing’).

Aim: A key aspect of biodiversity research is to determine the environmental drivers affecting the degree to which ecological assemblages vary in space (beta diversity). The strength and significance of environmental drivers of beta diversity is, however, influenced by the spatial extent over which beta diversity is assessed. Beta diversity of riverine biota is affected by flow variability. We examined hydrology–beta diversity relationships at two spatial extents (reaches vs. entire systems) within rivers to determine if relationships with hydrological variables are scale dependent or generalisable across spatial scales. Location: Murray–Darling Basin, Australia. Taxon: Freshwater fish. Methods: Fish assemblage data were sourced from two monitoring programmes that sampled sites annually during 2014–2019 and spanned either reaches (<100 km) or the broader ‘system’ extent (>1000 km) of five tributaries. Beta diversity was examined by calculating pairwise (incidence and abundance) dissimilarities for each year to compare temporal trends in beta diversity. Multi-site dissimilarities were modelled against hydrological variables using beta regression. Results: Inter-annual change in assemblage composition was detected only at the extent of river reaches but not at the extent of river systems. Temporal variation in within-river beta diversity showed inconsistent patterns when compared between the two spatial extents. Within-river beta diversity relationships with hydrological gradients were inconsistent among rivers. Overall, statistical models explained much more variation in within-river beta diversity when assessed at the reach extent when compared to broader river system extents. Main Conclusions: Our findings highlight that changes in within-river beta diversity are likely to depend on the spatial extent of sampling. Furthermore, inconsistent beta diversity–hydrology relationships among rivers suggest that both empirical evidence and theoretical predict

Motivation: Aquatic insects comprise 64% of freshwater animal diversity and are widely used as bioindicators to assess water quality impairment and freshwater ecosystem health, as well as to test ecological hypotheses. Despite their importance, a comprehensive, global database of aquatic insect occurrences for mapping freshwater biodiversity in macroecological studies and applied freshwater research is missing. We aim to fill this gap and present the Global EPTO Database, which includes worldwide geo-referenced aquatic insect occurrence records for four major taxa groups: Ephemeroptera, Plecoptera, Trichoptera and Odonata (EPTO). Main type of variables contained: A total of 8,368,467 occurrence records globally, of which 8,319,689 (99%) are publicly available. The records are attributed to the corresponding drainage basin and sub-catchment based on the Hydrography90m dataset and are accompanied by the elevation value, the freshwater ecoregion and the protection status of their location. Spatial location and grain: The database covers the global extent, with 86% of the observation records having coordinates with at least four decimal digits (11.1 m precision at the equator) in the World Geodetic System 1984 (WGS84) coordinate reference system. Time period and grain: Sampling years span from 1951 to 2021. Ninety-nine percent of the records have information on the year of the observation, 95% on the year and month, while 94% have a complete date. In the case of seven sub-datasets, exact dates can be retrieved upon communication with the data contributors. Major taxa and level of measurement: Ephemeroptera, Plecoptera, Trichoptera and Odonata, standardized at the genus taxonomic level. We provide species names for 7,727,980 (93%) records without further taxonomic verification. Software format: The entire tab-separated value (.csv) database can be downloaded and visualized at https://glowabio.org/project/epto_database/. Fifty individual datasets are also availab

Freshwater ecosystems harbour a disproportionately high biodiversity relative to their area, being also one of the most threatened ecosystem types worldwide. However, our capacity to design evidence-based conservation plans for this realm is restricted by all biodiversity shortfalls that have been recognized so far. In this context, the paucity of comparable field data and information on traits and phylogenies of freshwater organisms should be emphasized. Here, we highlight how increased knowledge could be gained and where we should aim at in research on the functional and phylogenetic features of freshwater communities. First, attempts to combine datasets from different sources should pay careful attention to data harmonization. Second, more effort should be focused on natural history observations on species habitats and life histories, providing the backbone of information for multi-trait databases. Third, fully resolved phylogenies would be required for deciphering the evolutionary relationships of freshwater organisms. Provided that these three hurdles can be overcome, conducting studies of local freshwater communities across continental spatial extents would pave the way for mapping functionally important ecosystems and evolutionarily valuable areas for the conservation of freshwater organisms and their habitats.

Unravelling patterns and mechanisms of biogeographical transitions is crucial if we are to understand compositional gradients at large spatial extents, but no studies have thus far examined breakpoints in community composition of freshwater plants across continents. Using a dataset of almost 500 observations of lake plant community composition from six continents, we examined, for the first time, if such breakpoints in geographical space exist for freshwater plants and how well a suite of ecological factors (including climatic and local environmental variables) can explain transitions in community composition from the subtropics to the poles. Our combination of multivariate regression tree (MRT) analysis and k-means partitioning suggests that the most abrupt breakpoint exists between temperate to boreal regions on the one hand and freshwater plant communities harbouring mainly subtropical or Mediterranean assemblages on the other. The spatially structured variation in current climatic conditions is the most likely candidate for controlling these latitudinal patterns, although one cannot rule out joint effects of eco-evolutionary constraints in the harsher high-latitude environments and post-glacial migration lags after Pleistocene Ice Ages. Overall, our study supports the foundations of global regionalisation for freshwater plants and anticipates further biogeographical research on freshwater plant communities once datasets have been harmonised for conducting large-scale spatial analyses.

Biotic homogenisation is defined as decreasing dissimilarity among ecological assemblages sampled within a given spatial area over time. Biotic differentiation, in turn, is defined as increasing dissimilarity over time. Overall, changes in the spatial dissimilarities among assemblages (termed ‘beta diversity’) is an increasingly recognised feature of broader biodiversity change in the Anthropocene. Empirical evidence of biotic homogenisation and biotic differentiation remains scattered across different ecosystems. Most meta-analyses quantify the prevalence and direction of change in beta diversity, rather than attempting to identify underlying ecological drivers of such changes. By conceptualising the mechanisms that contribute to decreasing or increasing dissimilarity in the composition of ecological assemblages across space, environmental managers and conservation practitioners can make informed decisions about what interventions may be required to sustain biodiversity and can predict potential biodiversity outcomes of future disturbances. We systematically reviewed and synthesised published empirical evidence for ecological drivers of biotic homogenisation and differentiation across terrestrial, marine, and freshwater realms to derive conceptual models that explain changes in spatial beta diversity. We pursued five key themes in our review: (i) temporal environmental change; (ii) disturbance regime; (iii) connectivity alteration and species redistribution; (iv) habitat change; and (v) biotic and trophic interactions. Our first conceptual model highlights how biotic homogenisation and differentiation can occur as a function of changes in local (alpha) diversity or regional (gamma) diversity, independently of species invasions and losses due to changes in species occurrence among assemblages. Second, the direction and magnitude of change in beta diversity depends on the interaction between spatial variation (patchiness) and temporal variation (synchronicit

The lack of high-resolution distribution maps for freshwater species across large scales fundamentally challenges biodiversity conservation worldwide. Here, we propose a simple framework to delineate the distributions of freshwater fishes in a high-resolution drainage map using stacked species distribution models and expert-based information. Applying this framework to the whole Chinese freshwater fish fauna (+1600 species), we produced high-resolution biodiversity patterns and revealed potential conflicts between biodiversity and anthropogenic disturbances. The correlations between spatial patterns of biodiversity facets (species richness, endemicity and phylogenetic diversity) were all significant but idiosyncratic (r = 0.43–0.98, P < 0.001). Areas with high values of different biodiversity facets overlapped with anthropogenic disturbances. Existing protected areas, covering 22% of China’s territory, were shown to protect 25–29% of fish habitats, 16–23% of species, and 30–31% of priority conservation areas. Moreover, 6–21% of the species are still completely unprotected. These results suggest the need for extending the network of protected areas to ensure the conservation of China’s freshwater fish biodiversity and the goods and services it provides to humans. Specifically, middle to low reaches of large rivers and their associated lakes from Northeast to Southwest China host the most diverse species assemblages and should be the target of future expansions of the network of protected areas. More generally, the framework we propose to draw high-resolution biodiversity maps combining species occurrence data and expert knowledge on species distribution provides an efficient way to unlock protected area designs regardless of the ecosystem, taxonomic group or world area considered.

The loss of biodiversity in the era of fast environmental change is often revealed as biotic homogenization. In the large and nutrient-rich Lake Taihu located in eastern China, we evaluated the degree of specialization among organisms and the impact of environmental factors on macroinvertebrate assemblages. First, we measured the niche widths of macroinvertebrate species in respect to environmental conditions and utilized the Outlying Mean Index (OMI) analysis to categorize them into specialists and generalists. The effects of environmental factors on assemblages of macroinvertebrate taxa identified by varying niche widths were then investigated using the lake dataset. Within our study lake, habitats display considerable environmental gradients, resulting in habitat heterogeneity linked to several habitats, and have no barriers to species migration. Generalist macroinvertebrate taxa dominated the macroinvertebrate assemblages in our study lake, but some differences were evident among the different habitat types of the lake. The macrophyte-dominated habitat (MDH) displayed the highest species richness for both generalists (11 species) and specialists (8 species), while the algal-dominated habitat (ADH) had lower richness but higher overall abundances. Generalist species showed the largest abundances, exhibiting considerable spatial heterogeneity among the sampled sites. Our results showed that generalists shape macroinvertebrate assemblages through their abundance and richness variation in large shallow lakes. Furthermore, strong environmental gradients and a high degree of habitat connectivity within large lakes allow specialist and intermediate species to maintain high richness in resource-rich habitats, in addition to generalist species also maintaining high abundance in such lakes.

Owing to a long history of anthropogenic pressures, freshwater ecosystems are among the most vulnerable to biodiversity loss1. Mitigation measures, including wastewater treatment and hydromorphological restoration, have aimed to improve environmental quality and foster the recovery of freshwater biodiversity2. Here, using 1,816 time series of freshwater invertebrate communities collected across 22 European countries between 1968 and 2020, we quantified temporal trends in taxonomic and functional diversity and their responses to environmental pressures and gradients. We observed overall increases in taxon richness (0.73% per year), functional richness (2.4% per year) and abundance (1.17% per year). However, these increases primarily occurred before the 2010s, and have since plateaued. Freshwater communities downstream of dams, urban areas and cropland were less likely to experience recovery. Communities at sites with faster rates of warming had fewer gains in taxon richness, functional richness and abundance. Although biodiversity gains in the 1990s and 2000s probably reflect the effectiveness of water-quality improvements and restoration projects, the decelerating trajectory in the 2010s suggests that the current measures offer diminishing returns. Given new and persistent pressures on freshwater ecosystems, including emerging pollutants, climate change and the spread of invasive species, we call for additional mitigation to revive the recovery of freshwater biodiversity.

Motivation Aquatic insects comprise 64% of freshwater animal diversity and are widely used as bioindicators to assess water quality impairment and freshwater ecosystem health, as well as to test ecological hypotheses. Despite their importance, a comprehensive, global database of aquatic insect occurrences for mapping freshwater biodiversity in macroecological studies and applied freshwater research is missing. We aim to fill this gap and present the Global EPTO Database, which includes worldwide geo-referenced aquatic insect occurrence records for four major taxa groups: Ephemeroptera, Plecoptera, Trichoptera and Odonata (EPTO). Main type of variables contained A total of 8,368,467 occurrence records globally, of which 8,319,689 (99%) are publicly available. The records are attributed to the corresponding drainage basin and sub-catchment based on the Hydrography90m dataset and are accompanied by the elevation value, the freshwater ecoregion and the protection status of their location. Spatial location and grain The database covers the global extent, with 86% of the observation records having coordinates with at least four decimal digits (11.1 m precision at the equator) in the World Geodetic System 1984 (WGS84) coordinate reference system. Time period and grain Sampling years span from 1951 to 2021. Ninety-nine percent of the records have information on the year of the observation, 95% on the year and month, while 94% have a complete date. In the case of seven sub-datasets, exact dates can be retrieved upon communication with the data contributors. Major taxa and level of measurement Ephemeroptera, Plecoptera, Trichoptera and Odonata, standardized at the genus taxonomic level. We provide species names for 7,727,980 (93%) records without further taxonomic verification. Software format The entire tab-separated value (.csv) database can be downloaded and visualized at https://glowabio.org/project/epto_database/. Fifty individual datasets are also available at https://f

Stem cell renewal and differentiation are regulated by interactions with the niche. Although multiple cell populations have been identified in distinct anatomical compartments, little is known about niche-specific molecular factors. Using skin as a model system and combining single-cell RNA-seq data analysis, immunofluorescence, and transgenic mouse models, we show that the transmembrane protein embigin is specifically expressed in the sebaceous gland and that the number of embigin-expressing cells is negatively regulated by Wnt. The loss of embigin promotes exit from the progenitor compartment and progression toward differentiation, and also compromises lipid metabolism. Embigin modulates sebaceous niche architecture by affecting extracellular matrix organization and basolateral targeting of monocarboxylate transport. We discover through ligand screening that embigin is a direct fibronectin receptor, binding to the N-terminal fibronectin domain without impairing integrin function. Our results solve the long-standing question of how embigin regulates cell adhesion and demonstrate a mechanism that couples adhesion and metabolism.

Understanding the capacity of ecological systems to withstand and recover from disturbances is a major challenge for ecological research in the context of environmental changes. Past research has mostly focused on the local effects of disturbances on biodiversity recovery, while alterations of inter-patch connectivity induced by disturbances have received comparatively less attention. Here, we investigated the effect of disturbances on local biodiversity recovery within metacommunities. Our specific focus was on drying river networks, which are characterised by a high variability of patch connectivity. We found marked variations of local biodiversity recovery among sites and among groups of organisms with contrasting dispersal modes, which were explained by the amount of patch connectivity loss due to drying events. Local communities of flying organisms recovered more efficiently from drying events than organisms with strictly aquatic dispersal due to the capacity of the former group to overcome hydrological connectivity loss. As a general rule, loss of patch connectivity decreases community recovery, regardless of patch location in the river network, dispersal mode or drying spatial extent. The relationship between patch connectivity loss and community recovery we found in river networks is general and applicable to any spatial network with a high variability of patch connectivity.

It has long been debated why groups such as non-avian dinosaurs became extinct whereas mammals and other lineages survived the Cretaceous/Paleogene mass extinction 66 million years ago. We used Markov networks, ecological niche partitioning, and Earth System models to reconstruct North American food webs and simulate ecospace occupancy before and after the extinction event. We find a shift in latest Cretaceous dinosaur faunas, as medium-sized species counterbalanced a loss of megaherbivores, but dinosaur niches were otherwise stable and static, potentially contributing to their demise. Smaller vertebrates, including mammals, followed a consistent trajectory of increasing trophic impact and relaxation of niche limits beginning in the latest Cretaceous and continuing after the mass extinction. Mammals did not simply proliferate after the extinction event; rather, their earlier ecological diversification might have helped them survive.

Geodiversity is an emerging, multi-faceted concept in Earth and environmental sciences. Knowledge on geo-diversity is crucial for understanding functions of natural systems and in guiding sustainable development. Despite the critical nature of geodiversity information, data acquisition and analytical methods have lagged behind the conceptual developments in biosciences. Thus, we propose that geodiversity research could adopt the framework of alpha, beta and gamma concepts widely used in biodiversity research. Especially, geodiversity research would benefit from widening its scope from the evaluation of individual sites towards more holistic geodiversity assessments, where between-site geodiversity is also considered. In this article, we explore the alpha, beta and gamma concepts and how they can be applied in a geodiversity framework. In addition, we scrutinize the statistical methodology related to alpha, beta and gamma geodiversity evaluations, with a special focus on distance metrics for measuring beta geodiversity. As an overview of the process, and to give practical guidelines for the application of the proposed methodology, we present a case study from a UNESCO Global Geopark area. Thus, this study not only develops the geodiversity concept, but also paves the way for simultaneous understanding of both geodiversity and biodiversity within a unified conceptual approach.

Urbanization is one of the major drivers of biotic homogenization (i.e., decrease in beta diversity) in freshwater systems. However, only a few studies have simultaneously examined how urbanization affects multiple facets (i.e., taxonomic, functional and phylogenetic) of beta diversity and its underlying ecological drivers in urban river macroinvertebrates. Here, we distinguished the patterns and ecological mechanisms of multiple facets of macroinvertebrate beta diversity weighted by incidence and abundance data in a subtropical river system with a distinct urbanization gradient. We also investigated how total beta diversity patterns stem from replacement versus richness difference among sites. Our results showed that taxonomic and phylogenetic beta diversities weighted by incidence data were primarily driven by replacement of taxa, whereas the richness difference contributed more to multiple facets of beta diversity based on abundance data. Furthermore, multiple facets of beta diversity decreased with urbanization for both incidence-weighted and abundance-weighted data, but the former showed more substantial decreases. Both replacement and richness difference components contributed roughly equally to the decline of incidence-weighted beta diversity. In contrast, the losses of abundance-weighted beta diversity were mainly associated with replacement of taxa. Variation partitioning results revealed that all beta diversity measures based on incidence data were governed primarily by local and land-use variables, whereas spatial variables were more relevant in driving beta diversity weighted by abundance data. Overall, by comparing different facets and components of beta diversity weighted by incidence versus abundance data, we suggest that incidence-weighted data may be more sensitive in portraying the impacts of urbanization on macroinvertebrate diversity. This likely resulted from the fact that incidence-weighted data shows the importance of rare taxa in sha

We examined the functional strategies and the trait space of 596 European taxa of freshwater macroinvertebrates characterized by 63 fuzzy coded traits belonging to 11 trait groups. Principal component analysis was used to reduce trait dimensionality, to explain ecological strategies, and to quantify the trait space occupied by taxa. Null models were used to compare observed occupancy with theoretical models, and randomization-based analyses were performed to test whether taxonomic relatedness, a proxy of phylogenetic signal, constrains the functional trait space of freshwater macroinvertebrates. We identified four major strategies along which functional traits of the taxa examined show trade-offs. In agreement with expectations and in contrast to existing evidence we found that life cycles and aquatic strategies are important in shaping functional structure of freshwater macroinvertebrates. Our results showed that the taxonomic groups examined fill remarkably different niches in the functional trait space. We found that the functional trait space of freshwater macroinvertebrates is reduced compared to the range of possibilities that would exist if traits varied independently. The observed decrease was between 23.44 and 44.61% depending on the formulation of the null expectations. We demonstrated also that taxonomic relatedness constrains the functional trait space of macroinvertebrates.

Iron (Fe) is an important element in aquatic ecosystems worldwide because it is intimately tied with multiple abiotic and biotic phenomena. Here, we give a survey of manifold influences of Fe, and the key factors affecting it in the boreal catchments and their waters. It includes the perspectives of biogeochemistry, hydrology, ecology, and river basin management. We emphasize views on the dynamics and impacts of different forms of Fe in riverine environments, including organic colloids and particles, as well as inorganic fractions. We also provide perspectives for land use management in boreal catchments and suggest guidelines for decision making and water management. Based on our survey, the main emphases of water protection and management programs should be (i) prevention of Fe mobilization from soil layers by avoiding unnecessary land-use activities and minimizing soil disturbance in high-risk areas; (ii) disconnecting Fe-rich ground water discharge from directly reaching watercourses; and (iii) decreasing transport of Fe to watercourses by applying efficient water pollution control approaches. These approaches may require specific methods that should be given attention depending on catchment conditions in different areas. Finally, we highlight issues requiring additional research on boreal catchments. A key issue is to increase our understanding of the role of Fe in the utilization of DOM in riverine food webs, which are typically highly heterotrophic. More knowledge is needed on the metabolic and behavioral resistance mechanisms that aquatic organisms, such as algae, invertebrates, and fish, have developed to counter the harmful impacts of Fe in rivers with naturally high Fe and DOM concentrations. It is also emphasized that to fulfil the needs presented above, as well as to develop effective methods for decreasing the harmful impacts of Fe in water management, the biogeochemical processes contributing to Fe transport from catchments via rivers to estu

Community ecology has had a strong focus on single snapshots of species compositional variation in time. However, environmental change often occurs slowly at relatively broad spatio-temporal scales, which requires historically explicit assessments of long-term metacommunity dynamics, such as the order of species arrival during community assembly (i.e., priority effects), a theme that merits further empirical quantification. In this study, we applied the Bayesian inference scheme of Hierarchical Modeling of Species Communities together with information on functional traits and evolutionary dependencies to efficiently explore the question of how ecological communities are organized in space and time. To do this, we used a comprehensive time-series dataset from boreal lake plants and adopted the perspective that more sound conclusions on metacommunity dynamics can be gained from studies that consider a historically integrative approach over long timeframes. Our findings revealed that historical contingency via priority effects can profoundly shape community assembly under the influence of environmental change across decades (here, from the 1940s to the 2010s). Similarly, our results supported the existence of both positive and negative species-to-species associations in lake plants, suggesting that functional divergence can switch the inhibition–facilitation balance at the metacommunity level. Perhaps more importantly, this proof-of-concept study supports the notion that community ecology should include a historical perspective and suggests that ignoring priority effects may risk our ability to identify the true magnitude of change in present-day biotic communities.

Aim: The interspecific relationships between species occupancy and abundance have been broadly studied in terrestrial systems; however, the causes underlying this relationship in freshwater fishes remain poorly addressed. The main aims of this study were (a) to examine the occupancy–abundance relationship in 62 fish species in a monsoon climate river; (b) to determine the relative importance of species niche, functional traits and phylogenetic relatedness in shaping the occupancy–abundance relationship. Location: The Chishui River, the Yunnan-Guizhou Plateau and the Szechwan Basin, China. Taxon: Freshwater fishes. Methods: A linear model was used to test the relationship between distribution and mean abundance across fish species. The outlying mean index analysis was performed to estimate niche breadth and niche position parameters for each fish species. In addition, using principal coordinates analysis, we created four trait vectors describing the similarity of species’ traits. Fish phylogeny was obtained from a global molecular phylogenetic tree of actinopterygian fishes. We used a combination of linear models, commonality analyses and boosted regression trees to evaluate the relative effects of the niche metrics, traits and phylogenetic relatedness on occupancy and abundance. Results: Fish occupancy was strongly (R² = 0.749) and positively correlated with mean abundance in the Chishui River. Niche parameters, especially niche position, were the main determinants of variation in occupancy (e.g. total contribution of niche position and breadth using commonality analyses: 0.587 and 0.318) and abundance (0.323 and 0.151) across species. Furthermore, traits and phylogeny had little to no effect on fish occupancy (0.034 and 0.037) and abundance (0.021 and 0.003). Main conclusions: Freshwater fishes in the Chishui River fit the common macroecological pattern of positive relationship between occupancy and abundance. Niche parameters, but not traits and phylogeny