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Galaxy clusters provide an avenue to expand our knowledge of cosmology and galaxy evolution. Because it is difficult to accurately measure the total mass of a large number of individual clusters, cluster samples are typically selected using an observable proxy for mass. Selection effects are therefore a key problem in understanding galaxy cluster statistics. We make use of the $(2.8~\rm{Gpc})^3$ FLAMINGO hydrodynamical simulation to investigate how selection based on X-ray luminosity, thermal Sunyaev-Zeldovich effect or galaxy richness influences the halo mass distribution. We define our selection cuts based on the median value of the observable at a fixed mass and compare the resulting samples to a mass-selected sample. We find that all samples are skewed towards lower mass haloes. For X-ray luminosity and richness cuts below a critical value, scatter dominates over the trend with mass and the median mass becomes biased increasingly low with respect to a mass-selected sample. At $z\leq0.5$, observable cuts corresponding to median halo masses between $M_\text{500c}=10^{14}$ and $10^{15}~\rm{M_{\odot}}$ give nearly unbiased median masses for all selection methods, but X-ray selection results in biased medians for higher masses. For cuts corresponding to median masses $<10^{14}$ at $z\leq0.5$ and for all masses at $z\geq1$, only Compton-Y selection yields nearly unbiased median masses. Importantly, even when the median mass is unbiased, the scatter is not because for each selection the sample is skewed towards lower masses than a mass-selected sample. Each selection leads to a different bias in secondary quantities like cool-core fraction, temperature and gas fraction., Comment: 18 pages, 10 figures (Including the appendix). Submitted to MNRAS

We present the online service cosmICweb (COSMological Initial Conditions on the WEB) - the first database and web interface to store, analyze, and disseminate initial conditions for zoom simulations of objects forming in cosmological simulations: from galaxy clusters to galaxies and more. Specifically, we store compressed information about the Lagrangian proto-halo patches for all objects in a typical simulation merger tree along with properties of the halo/galaxy across cosmic time. This enables a convenient web-based selection of the desired zoom region for an object fitting user-specified selection criteria. The information about the region can then be used with the MUSIC code to generate the zoom ICs for the simulation. In addition to some other simulations, we currently support all objects in the EAGLE simulation database, so that for example the Auriga simulations are easily reproduced, which we demonstrate explicitly. The framework is extensible to include other simulations through an API that can be added to an existing database structure and with which cosmICweb can then be interfaced. We make the web portal and database publicly available to the community., Comment: To be submitted to The Open Journal of Astrophysics. The cosmICweb portal is accessible under https://cosmicweb.eu. v2: fixed rendering issues (Safari) in Fig. 3

Observations with the James Webb Space Telescope have revealed a high abundance of bright galaxies at redshift, $z\gtrsim 12$, which has been widely interpreted as conflicting with the $\Lambda$CDM model. In Cowley et al. (2018) predictions were made - prior to the JWST observations - for the expected abundance of these galaxies using the Durham semi-analytic galaxy formation model, GALFORM, which is known to produce a realistic population of galaxies at lower redshifts including the present day. Key to this model is the assumption of a "top-heavy" initial mass function of stars formed in bursts (required to explain the number counts and redshift distribution of sub-millimetre galaxies). Here, we compare the rest-frame ultraviolet luminosity functions derived from JWST observations with those predicted by the Cowley et al. model up to $z=14$ and make further predictions for $z=16$. We find that below $z\sim 10$, the Cowley et al. predictions agree very well with observations, while agreement at $z\gtrsim12$ requires extending the model to take into account the timescale for the growth of obscuring dust grains and its dependence on gas metallicity. We trace the evolution of these galaxies from $z=14$ to $z=0$ and find that their descendants typically reside in halos with a median mass of $10^{13.6}\,h^{-1}\,\mathrm{M_{\odot}}$. The stellar masses of the descendants range from $10^{7}\,h^{-1}\,\mathrm{M_{\odot}}$ to $10^{11.5}\,h^{-1}\,\mathrm{M_{\odot}}$. Although these galaxies were all central galaxies at $z=14$, nearly half of their descendants end up as satellites in massive halos., Comment: 14 pages, 8 figures, submitted to MNRAS on 4 June, 2024

The relativistic Sunyaev-Zel'dovich (SZ) effect can be used to measure intracluster gas temperatures independently of X-ray spectroscopy. Here, we use the large-volume FLAMINGO simulation suite to determine whether SZ $y$-weighted temperatures lead to more accurate hydrostatic mass estimates in massive ($M_{\rm 500c} > 7.5\times 10^{14}\,{\rm M}_{\odot}$) clusters than when using X-ray spectroscopic-like temperatures. We find this to be the case, on average. The median bias in the SZ mass at redshift zero is $\left< b \right> \equiv 1-\left< M_{\rm 500c,hse}/M_{\rm 500c,true} \right> = -0.05 \pm 0.01$, over 4 times smaller in magnitude than the X-ray spectroscopic-like case, $\left< b \right> = 0.22 \pm 0.01$. However, the scatter in the SZ bias, $\sigma_{b} \approx 0.2$, is around 40 per cent larger than for the X-ray case. We show that this difference is strongly affected by clusters with large pressure fluctuations, as expected from shocks in ongoing mergers. Selecting the clusters with the best-fitting generalized NFW pressure profiles, the median SZ bias almost vanishes, $\left< b \right> = -0.009 \pm 0.005$, and the scatter is halved to $\sigma_{b} \approx 0.1$. We study the origin of the SZ/X-ray difference and find that, at $R_{\rm 500c}$ and in the outskirts, SZ weighted gas better reflects the hot, hydrostatic atmosphere than the X-ray weighted gas. The SZ/X-ray temperature ratio increases with radius, a result we find to be insensitive to variations in baryonic physics, cosmology and numerical resolution., Comment: 19 pages, 22 figures, submitted to MNRAS. Comments welcome

Large-scale structure surveys have reported measurements of the density of matter, $\Omega_\mathrm{m}$, and the amplitude of clustering, $\sigma_8$, that are in tension with the values inferred from observations of the cosmic microwave background. While this may be a sign of new physics that slows the growth of structure at late times, strong astrophysical feedback processes could also be responsible. In this work, we argue that astrophysical processes are not independent of cosmology and that their coupling naturally leads to stronger baryonic feedback in cosmological models with suppressed structure formation or when combined with a mechanism that removes dark matter from halos. We illustrate this with two well-motivated extensions of the Standard Model known to suppress structure formation: massive neutrinos and decaying dark matter. Our results, based on the FLAMINGO suite of hydrodynamical simulations, show that the combined effect of baryonic and non-baryonic suppression mechanisms is greater than the sum of its parts, particularly for decaying dark matter. We also show that the dependence of baryonic feedback on cosmology can be modelled as a function of the ratio $f_\mathrm{b}/c^2_\mathrm{v}\sim f_\mathrm{b}/(\Omega_\mathrm{m}\sigma_8)^{1/4}$ of the universal baryon fraction, $f_\mathrm{b}$, to a velocity-based definition of halo concentration, $c^2_\mathrm{v}$, giving an accurate fitting formula for the baryonic suppression of the matter power spectrum. Although the combination of baryonic and non-baryonic suppression mechanisms can resolve the tension, the models with neutrinos and decaying dark matter are challenged by constraints on the expansion history., Comment: 16 pages, 9 figures, submitted to MNRAS

Recent observations from the EIGER JWST program have measured for the first time the quasar-galaxy cross-correlation function at $z\approx6$. The auto-correlation function of faint $z\approx6$ quasars was also recently estimated. These measurements provide key insights into the properties of quasars and galaxies at high redshift and their relation with the host dark matter halos. In this work, we interpret these data building upon an empirical quasar population model that has been applied successfully to quasar clustering and demographic measurements at $z\approx2-4$. We make use of a new, large-volume N-body simulation with more than a trillion particles, FLAMINGO-10k, to model quasars and galaxies simultaneously. We successfully reproduce observations of $z\approx6$ quasars and galaxies (i.e., their clustering properties and luminosity functions), and infer key quantities such as their luminosity-halo mass relation, the mass function of their host halos, and their duty cycle/occupation fraction. Our key findings are: (i) quasars reside on average in $\approx10^{12.4}\,{\rm M}_\odot$ halos (corresponding to $\approx5\sigma$ fluctuations in the initial conditions of the linear density field), but the distribution of host halo masses is quite broad; (ii) the duty cycle of (UV-bright) quasar activity is relatively low ($\lesssim1\%$); (iii) galaxies (that are bright in [OIII]) live in much smaller halos ($\approx10^{10.9}\,{\rm M}_\odot$) and have a larger duty cycle (occupation fraction) of $\approx20\%$. Finally, we focus on the inferred properties of quasars and present a homogeneous analysis of their evolution with redshift. The picture that emerges reveals a strong evolution of the host halo mass and duty cycle of quasars at $z\approx2-6$, and calls for new investigations of the role of quasar activity across cosmic time., Comment: Submitted to MNRAS; 15 pages, 4 figures

We expect luminous ($M_{1450}\lesssim-26.5$) high-redshift quasars to trace the highest density peaks in our universe, and therefore to reside in proto-clusters encompassing an abundance of galaxies in close vicinity. Here, we present observations of four $z\gtrsim6$ quasar fields using JWST/NIRCam in imaging and widefield slitless spectroscopy mode and report a wide range in the number of detected [OIII]-emitting galaxies in the quasars' environments, ranging between a density enhancement of $\delta>100$ within a $2$ cMpc radius - one of the largest proto-clusters during the Epoch of Reionization discovered to date - to a density contrast consistent with zero, indicating the presence of a UV-luminous quasar in a region comparable to the average density of the universe. By measuring the two-point cross-correlation function of quasars and their surrounding galaxies, as well as the galaxy auto-correlation function, we infer a correlation length of quasars at $\langle z\rangle=6.25$ of $r_0^{\rm QQ}=21.3^{+2.7}_{-2.6}~{\rm cMpc}\,h^{-1}$, while we obtain a correlation length of the [OIII]-emitting galaxies of $r_0^{\rm GG}=4.2\pm0.1~{\rm cMpc}\,h^{-1}$. By comparing the correlation functions to dark-matter-only simulations we estimate the minimum mass of the quasars' host dark matter halos to be $\log_{10}(M_{\rm halo, min}/M_\odot)=12.30\pm0.14$ (and $\log_{10}(M_{\rm halo, min}^{\rm [OIII]}/M_\odot) = 10.72\pm0.03$ for the [OIII]-emitters), indicating that (a) luminous quasars do not necessarily reside within the most overdense regions in the early universe, and that (b) the UV-luminous duty cycle of quasar activity at these redshifts is $f_{\rm duty}\ll1$. Such short quasar activity timescales challenge our understanding of early supermassive black hole growth and provide evidence for highly dust-obscured growth phases or episodic, radiatively inefficient accretion rates., Comment: Submitted to AAS Journals

Weak gravitational lensing convergence peaks, the local maxima in weak lensing convergence maps, have been shown to contain valuable cosmological information complementary to commonly used two-point statistics. To exploit the full power of weak lensing for cosmology, we must model baryonic feedback processes because these reshape the matter distribution on non-linear and mildly non-linear scales. We study the impact of baryonic physics on the number density of weak lensing peaks using the FLAMINGO cosmological hydrodynamical simulation suite. We generate ray-traced full-sky convergence maps mimicking the characteristics of a Stage IV weak lensing survey. We compare the number densities of peaks in simulations that have been calibrated to reproduce the observed galaxy mass function and cluster gas fraction or to match a shifted version of these, and that use either thermally driven or jet AGN feedback. We show that the differences induced by realistic baryonic feedback prescriptions (typically $5 - 30\%$ for $\kappa = 0.1 - 0.4$) are smaller than those induced by reasonable variations in cosmological parameters ($20 - 60\%$ for $\kappa = 0.1 - 0.4$) but must be modeled carefully to obtain unbiased results. The reasons behind these differences can be understood by considering the impact of feedback on halo masses, or by considering the impact of different cosmological parameters on the halo mass function. Our analysis demonstrates that, for the range of models we investigated, the baryonic suppression is insensitive to changes in cosmology up to $\kappa \approx 0.4$ and that the higher $\kappa$ regime is dominated by Poisson noise and cosmic variance., Comment: 18 pages, 12 figures (including the appendix), Accepted for publication in MNRAS

Galaxy clusters are important probes for both cosmology and galaxy formation physics. We test the cosmological, hydrodynamical FLAMINGO simulations by comparing to observations of the gaseous properties of clusters measured from X-ray observations. FLAMINGO contains unprecedented numbers of massive galaxy groups ($>10^6$) and clusters ($>10^5$) and includes variations in both cosmology and galaxy formation physics. We predict the evolution of cluster scaling relations as well as radial profiles of the temperature, density, pressure, entropy, and metallicity for different masses and redshifts. We show that the differences between volume-, and X-ray-weighting of particles in the simulations, and between cool-core non cool-core samples, are similar in size as the differences between simulations for which the stellar and AGN feedback has been calibrated to produce significantly different gas fractions. Compared to thermally-driven AGN feedback, kinetic jet feedback calibrated to produce the same gas fraction at $R_{\rm 500c}$ yields a hotter core with higher entropies and lower densities, which translates into a smaller fraction of cool-core clusters. Stronger feedback, calibrated to produce lower gas fractions and hence lower gas densities, results in higher temperatures, entropies, and metallicities, but lower pressures. The scaling relations and thermodynamic profiles show almost no evolution with respect to self-similar expectations, except for the metallicity decreasing with redshift. We find that the temperature, density, pressure, and entropy profiles of clusters in the fiducial FLAMINGO simulation are in excellent agreement with observations, while the metallicities in the core are too high., Comment: 21 pages, 14 figures (including appendix). Accepted for publication in MNRAS. Moved Section 3 to Appendix A, new Section 3 compares scaling relations for different physics models. Added lower mass bin for physics model comparison of thermodynamic profiles. Conclusions unchanged

A number of recent studies have found evidence for a tension between observations of large-scale structure (LSS) and the predictions of the standard model of cosmology with the cosmological parameters fit to the cosmic microwave background (CMB). The origin of this '$S_8$ tension' remains unclear, but possibilities include new physics beyond the standard model, unaccounted for systematic errors in the observational measurements and/or uncertainties in the role that baryons play. Here we carefully examine the latter possibility using the new FLAMINGO suite of large-volume cosmological hydrodynamical simulations. We project the simulations onto observable harmonic space and compare with observational measurements of the power and cross-power spectra of cosmic shear, CMB lensing, and the thermal Sunyaev-Zel'dovich (tSZ) effect. We explore the dependence of the predictions on box size and resolution, cosmological parameters including the neutrino mass, and the efficiency and nature of baryonic 'feedback'. Despite the wide range of astrophysical behaviours simulated, we find that baryonic effects are not sufficiently large to remove the $S_8$ tension. Consistent with recent studies, we find the CMB lensing power spectrum is in excellent agreement with the standard model, whilst the cosmic shear power spectrum, tSZ effect power spectrum, and the cross-spectra between shear, CMB lensing, and the tSZ effect are all in varying degrees of tension with the CMB-specified standard model. These results suggest that some mechanism is required to slow the growth of fluctuations at late times and/or on non-linear scales, but that it is unlikely that baryon physics is driving this modification., Comment: 26 pages, 12 figures, MNRAS, accepted with minor revisions

Weak lensing of the cosmic microwave background is rapidly emerging as a powerful probe of neutrinos, dark energy, and new physics. We present a fast computation of the non-linear CMB lensing power spectrum which combines non-linear perturbation theory at early times with power spectrum emulation using cosmological simulations at late times. Comparing our calculation with lightcones from the FLAMINGO 5.6 Gpc cube dark-matter-only simulation, we confirm its accuracy to 1% (2%) up to multipoles L = 3000 (L = 5000) for a nuLambdaCDM cosmology consistent with current data. Clustering suppression due to small-scale baryonic phenomena such as feedback from active galactic nuclei can reduce the lensing power by of order 10%. To our perturbation theory and emulator-based calculation we add SP(k), a new fitting function for this suppression, and confirm its accuracy compared to the FLAMINGO hydrodynamic simulations to 4% at L = 5000, with similar accuracy for massive neutrino models. We further demonstrate that scale-dependent suppression due to neutrinos and baryons approximately factorize, implying that a careful treatment of baryonic feedback can limit biasing neutrino mass constraints., Comment: 14 pages, 21 figures, 1 table

To fully take advantage of the data provided by large-scale structure surveys, we need to quantify the potential impact of baryonic effects, such as feedback from active galactic nuclei (AGN) and star formation, on cosmological observables. In simulations, feedback processes originate on scales that remain unresolved. Therefore, they need to be sourced via subgrid models that contain free parameters. We use machine learning to calibrate the AGN and stellar feedback models for the FLAMINGO cosmological hydrodynamical simulations. Using Gaussian process emulators trained on Latin hypercubes of 32 smaller-volume simulations, we model how the galaxy stellar mass function and cluster gas fractions change as a function of the subgrid parameters. The emulators are then fit to observational data, allowing for the inclusion of potential observational biases. We apply our method to the three different FLAMINGO resolutions, spanning a factor of 64 in particle mass, recovering the observed relations within the respective resolved mass ranges. We also use the emulators, which link changes in subgrid parameters to changes in observables, to find models that skirt or exceed the observationally allowed range for cluster gas fractions and the stellar mass function. Our method enables us to define model variations in terms of the data that they are calibrated to rather than the values of specific subgrid parameters. This approach is useful, because subgrid parameters are typically not directly linked to particular observables, and predictions for a specific observable are influenced by multiple subgrid parameters., Comment: 24 pages, 10 figures (Including the appendix). Accepted for publication in MNRAS. Minor changes w.r.t. version 1. For visualisations, see the FLAMINGO website at https://flamingo.strw.leidenuniv.nl/

We introduce the Virgo Consortium's FLAMINGO suite of hydrodynamical simulations for cosmology and galaxy cluster physics. To ensure the simulations are sufficiently realistic for studies of large-scale structure, the subgrid prescriptions for stellar and AGN feedback are calibrated to the observed low-redshift galaxy stellar mass function and cluster gas fractions. The calibration is performed using machine learning, separately for three resolutions. This approach enables specification of the model by the observables to which they are calibrated. The calibration accounts for a number of potential observational biases and for random errors in the observed stellar masses. The two most demanding simulations have box sizes of 1.0 and 2.8 Gpc and baryonic particle masses of $1\times10^8$ and $1\times10^9 \text{M}_\odot$, respectively. For the latter resolution the suite includes 12 model variations in a 1 Gpc box. There are 8 variations at fixed cosmology, including shifts in the stellar mass function and/or the cluster gas fractions to which we calibrate, and two alternative implementations of AGN feedback (thermal or jets). The remaining 4 variations use the unmodified calibration data but different cosmologies, including different neutrino masses. The 2.8 Gpc simulation follows $3\times10^{11}$ particles, making it the largest ever hydrodynamical simulation run to $z=0$. Lightcone output is produced on-the-fly for up to 8 different observers. We investigate numerical convergence, show that the simulations reproduce the calibration data, and compare with a number of galaxy, cluster, and large-scale structure observations, finding very good agreement with the data for converged predictions. Finally, by comparing hydrodynamical and `dark-matter-only' simulations, we confirm that baryonic effects can suppress the halo mass function and the matter power spectrum by up to $\approx20$ per cent., Comment: 44 pages, 23 figures. Accepted for publication in MNRAS. V3 includes changes made in published version: jet simulations were redone to fix a bug, but the differences are nearly invisible. For visualizations, see the FLAMINGO website at https://flamingo.strw.leidenuniv.nl/

We present SIBELIUS-DARK, a constrained realisation simulation of the local volume to a distance of 200~Mpc from the Milky Way. SIBELIUS-DARK is the first study of the \textit{Simulations Beyond The Local Universe} (SIBELIUS) project, which has the goal of embedding a model Local Group-like system within the correct cosmic environment. The simulation is dark-matter-only, with the galaxy population calculated using the semi-analytic model of galaxy formation, GALFORM. We demonstrate that the large-scale structure that emerges from the SIBELIUS constrained initial conditions matches well the observational data. The inferred galaxy population of SIBELIUS-DARK also match well the observational data, both statistically for the whole volume and on an object-by-object basis for the most massive clusters. For example, the $K$-band number counts across the whole sky, and when divided between the northern and southern Galactic hemispheres, are well reproduced by SIBELIUS-DARK. We find that the local volume is somewhat unusual in the wider context of $\Lambda$CDM: it contains an abnormally high number of supermassive clusters, as well as an overall large-scale underdensity at the level of $\approx 5$\% relative to the cosmic mean. However, whilst rare, the extent of these peculiarities does not significantly challenge the $\Lambda$CDM model. SIBELIUS-DARK is the most comprehensive constrained realisation simulation of the local volume to date, and with this paper we publicly release the halo and galaxy catalogues at $z=0$, which we hope will be useful to the wider astronomy community., Comment: 26 pages, 19 figures. Paper as been accepted for publication in MNRAS. Comments welcome

We examine the effect of using different halo finders and merger tree building algorithms on galaxy properties predicted using the GALFORM semi-analytical model run on a high resolution, large volume dark matter simulation. The halo finders/tree builders HBT, ROCKSTAR, SUBFIND and VELOCIRAPTOR differ in their definitions of halo mass, on whether only spatial or phase-space information is used, and in how they distinguish satellite and main haloes; all of these features have some impact on the model galaxies, even after the trees are post-processed and homogenised by GALFORM. The stellar mass function is insensitive to the halo and merger tree finder adopted. However, we find that the number of central and satellite galaxies in GALFORM does depend slightly on the halo finder/tree builder. The number of galaxies without resolved subhaloes depends strongly on the tree builder, with VELOCIRAPTOR, a phase-space finder, showing the largest population of such galaxies. The distributions of stellar masses, cold and hot gas masses, and star formation rates agree well between different halo finders/tree builders. However, because VELOCIRAPTOR has more early progenitor haloes, with these trees GALFORM produces slightly higher star formation rate densities at high redshift, smaller galaxy sizes, and larger stellar masses for the spheroid component. Since in all cases these differences are small we conclude that, when all of the trees are processed so that the main progenitor mass increases monotonically, the predicted GALFORM galaxy populations are stable and consistent for these four halo finders/tree builders., Comment: 20 pages, 16 figures

The satellite galaxies of the Milky Way (MW) are effective probes of the underlying dark matter (DM) substructure, which is sensitive to the nature of the DM particle. In particular, a class of DM models have a power spectrum cut-off on the mass scale of dwarf galaxies and thus predict only small numbers of substructures below the cut-off mass. This makes the MW satellite system appealing to constrain the DM properties: feasible models must produce enough substructure to host the number of observed Galactic satellites. Here, we compare theoretical predictions of the abundance of DM substructure in thermal relic warm DM (WDM) models with estimates of the total satellite population of the MW. This produces conservative robust lower limits on the allowed mass, $m_\mathrm{th}$, of the thermal relic WDM particle. As the abundance of satellite galaxies depends on the MW halo mass, we marginalize over the corresponding uncertainties and rule out $m_\mathrm{th} \leq 2.02\, \mathrm{keV}$ at 95 per cent confidence independently of assumptions about galaxy formation processes. Modelling some of these - in particular, the effect of reionization, which suppresses the formation of dwarf galaxies - strengthens our constraints on the DM properties and excludes models with $m_\mathrm{th} \leq 3.99\, \mathrm{keV}$ in our fiducial model. We also find that thermal relic models cannot produce enough satellites if the MW halo mass is $M_{200}\leq 0.6\times 10^{12}\, \mathrm{M_\odot}$, which imposes a lower limit on the MW halo mass in CDM. We address several observational and theoretical uncertainties and discuss how improvements in these will strengthen the DM mass constraints., Comment: 29 pages (JCAP format), 3 appendices, 10 figures, 1 table. Version accepted by JCAP and published by IOP Publishing under Gold Open Access - Transformative Agreement with a CC-BY 4.0 licence

The Friends-of-Friends (FoF) algorithm is a standard technique used in cosmological $N$-body simulations to identify structures. Its goal is to find clusters of particles (called groups) that are separated by at most a cut-off radius. $N$-body simulations typically use most of the memory present on a node, leaving very little free for a FoF algorithm to run on-the-fly. We propose a new method that utilises the common Union-Find data structure and a hybrid MPI+threads approach. The algorithm can also be expressed elegantly in a task-based formalism if such a framework is used in the rest of the application. We have implemented our algorithm in the open-source cosmological code, SWIFT. Our implementation displays excellent strong- and weak-scaling behaviour on realistic problems and compares favourably (speed-up of 18x) over other methods commonly used in the $N$-body community., Comment: 12 pages, 4 figures. Proceedings of the ParCo 2019 conference, Prague, Czech Republic, September 10-13th, 2019

The Milky Way's (MW) satellite population is a powerful probe of warm dark matter (WDM) models as the abundance of small substructures is very sensitive to the properties of the WDM particle. However, only a partial census of the MW's complement of satellite galaxies exists because surveys of the MW's close environs are incomplete both in depth and in sky coverage. We present a new Bayesian analysis that combines the sample of satellites recently discovered by the Dark Energy Survey (DES) with those found in the Sloan Digital Sky Survey (SDSS) to estimate the total satellite galaxy luminosity function down to $M_{\rm V}=0$. We find that there should be at least $124^{+40}_{-27}$ ($68\%$ CL, statistical error) satellites as bright or brighter than $M_{\rm V}=0$ within 300 kpc of the Sun, with only a weak dependence on MW halo mass. When it comes online the Large Synoptic Survey Telescope should detect approximately half of this population. We also show that WDM models infer the same number of satellites as in $\Lambda$CDM, which will allow us to rule out those models that produce insufficient substructure to be viable., Comment: 4 pages, 3 figures, to appear in proceedings of IAU Symposium 344 "Dwarf Galaxies: From the Deep Universe to the Present"

It is now possible for hydrodynamical simulations to reproduce a representative galaxy population. Accordingly, it is timely to assess critically some of the assumptions of traditional semi-analytic galaxy formation models. We use the Eagle simulations to assess assumptions built into the Galform semi-analytic model, focussing on those relating to baryon cycling, angular momentum and feedback. We show that the assumption in Galform that newly formed stars have the same specific angular momentum as the total disc leads to a significant overestimate of the total stellar specific angular momentum of disc galaxies. In Eagle, stars form preferentially out of low specific angular momentum gas in the interstellar medium (ISM) due to the assumed gas density threshold for stars to form, leading to more realistic galaxy sizes. We find that stellar mass assembly is similar between Galform and Eagle but that the evolution of gas properties is different, with various indications that the rate of baryon cycling in Eagle is slower than is assumed in Galform. Finally, by matching individual galaxies between Eagle and Galform, we find that an artificial dependence of AGN feedback and gas infall rates on halo mass doubling events in Galform drives most of the scatter in stellar mass between individual objects. Put together our results suggest that the Galform semi-analytic model can be significantly improved in light of recent advances., Comment: some references corrected, 31 pages, 19 figures, submitted to MNRAS after responding to a first referee report

We analyse the mass assembly of central galaxies in the EAGLE hydrodynamical simulations. We build merger trees to connect galaxies to their progenitors at different redshifts and characterize their assembly histories by focusing on the time when half of the galaxy stellar mass was assembled into the main progenitor. We show that galaxies with stellar mass $M_*<10^{10.5}M_{\odot}$ assemble most of their stellar mass through star formation in the main progenitor (`in-situ' star formation). This can be understood as a consequence of the steep rise in star formation efficiency with halo mass for these galaxies. For more massive galaxies, however, an increasing fraction of their stellar mass is formed outside the main progenitor and subsequently accreted. Consequently, while for low-mass galaxies the assembly time is close to the stellar formation time, the stars in high-mass galaxies typically formed long before half of the present-day stellar mass was assembled into a single object, giving rise to the observed anti-hierarchical downsizing trend. In a typical present-day $M_*\geq10^{11}M_{\odot}$ galaxy, around $20\%$ of the stellar mass has an external origin. This fraction decreases with increasing redshift. Bearing in mind that mergers only make an important contribution to the stellar mass growth of massive galaxies, we find that the dominant contribution comes from mergers with galaxies of mass greater than one tenth of the main progenitor's mass. The galaxy merger fraction derived from our simulations agrees with recent observational estimates., Comment: 17 pages, 14 figures, 2 tables. Accepted for publication in MNRAS

We use the Copernicus Complexio (COCO) high resolution $N$-body simulations to investigate differences in the properties of small-scale structures in the standard cold dark matter (CDM) model and in a model with a cutoff in the initial power spectrum of density fluctuations consistent with both a thermally produced warm dark matter (WDM) particle or a sterile neutrino with mass 7 keV and leptogenesis parameter $L_6=8.7$. The latter corresponds to the "coldest" model with this sterile neutrino mass compatible with the identification of the recently detected 3.5 keV X-ray line as resulting from particle decay. CDM and WDM predict very different number densities of subhaloes with mass $\leq 10^9\,h^{-1}\,M_\odot$ although they predict similar, nearly universal, normalised subhalo radial density distributions. Haloes and subhaloes in both models have cuspy NFW profiles, but WDM subhaloes below the cutoff scale in the power spectrum (corresponding to maximum circular velocities $V_{\mathrm{max}}^{z=0} \leq50~\mathrm{kms}^{-1}$) are less concentrated than their CDM counterparts. We make predictions for observable properties using the GALFORM semi-analytic model of galaxy formation. Both models predict Milky Way satellite luminosity functions consistent with observations, although the WDM model predicts fewer very faint satellites. This model, however, predicts slightly more UV bright galaxies at redshift $z>7$ than CDM, but both are consistent with observations. Gravitational lensing offers the best prospect of distinguishing between the models., Comment: 13 pages, 12 figures, MNRAS accepted version

We compare global predictions from the EAGLE hydrodynamical simulation, and two semi-analytic (SA) models of galaxy formation, L-GALAXIES and GALFORM. All three models include the key physical processes for the formation and evolution of galaxies and their parameters are calibrated against a small number of observables at $z\approx 0$. The two SA models have been applied to merger trees constructed from the EAGLE dark matter only simulation. We find that at $z\leq 2$, both the galaxy stellar mass functions for stellar masses $M_*<10^{10.5} M_{\odot}$ and the median specific star formation rates (sSFRs) in the three models agree to better than $0.4$~dex. The evolution of the sSFR predicted by the three models closely follows the mass assembly history of dark matter haloes. In both EAGLE and L-GALAXIES there are more central passive galaxies with $M_*<10^{9.5} M_{\odot}$ than in L-GALAXIES. This difference is related to galaxies that have entered and then left a larger halo and which are treated as satellites in GALFORM. In the range $010^{9.5} M_{\odot}$ differ in some instances by an order of magnitude, while the stellar mass-size relation in EAGLE is a factor of $\approx 2$ tighter than for the two SA models. Our results suggest the need for a revision of how SA models treat the effect of baryonic self-gravity on the underlying dark matter. The treatment of gas flows in the models needs to be revised based on detailed comparison with observations to understand in particular the evolution of the stellar mass-metallicity relation., Comment: 26 pages, 16 figures, re-submitted to MNRAS. Version including the modifications addressing the referee's suggestions

The Local Group of galaxies offer some of the most discriminating tests of models of cosmic structure formation. For example, observations of the Milky Way (MW) and Andromeda satellite populations appear to be in disagreement with N-body simulations of the "Lambda Cold Dark Matter" ({\Lambda}CDM) model: there are far fewer satellite galaxies than substructures in cold dark matter halos (the "missing satellites" problem); dwarf galaxies seem to avoid the most massive substructures (the "too-big-to-fail" problem); and the brightest satellites appear to orbit their host galaxies on a thin plane (the "planes of satellites" problem). Here we present results from APOSTLE (A Project Of Simulating The Local Environment), a suite of cosmological hydrodynamic simulations of twelve volumes selected to match the kinematics of the Local Group (LG) members. Applying the Eagle code to the LG environment, we find that our simulations match the observed abundance of LG galaxies, including the satellite galaxies of the MW and Andromeda. Due to changes to the structure of halos and the evolution in the LG environment, the simulations reproduce the observed relation between stellar mass and velocity dispersion of individual dwarf spheroidal galaxies without necessitating the formation of cores in their dark matter profiles. Satellite systems form with a range of spatial anisotropies, including one similar to that of the MW, confirming that such a configuration is not unexpected in {\Lambda}CDM. Finally, based on the observed velocity dispersion, size, and stellar mass, we provide new estimates of the maximum circular velocity for the halos of nine MW dwarf spheroidals., Comment: 15 pages, submitted to MNRAS. arXiv admin note: text overlap with arXiv:1412.2748

We present the public data release of halo and galaxy catalogues extracted from the EAGLE suite of cosmological hydrodynamical simulations of galaxy formation. These simulations were performed with an enhanced version of the GADGET code that includes a modified hydrodynamics solver, time-step limiter and subgrid treatments of baryonic physics, such as stellar mass loss, element-by-element radiative cooling, star formation and feedback from star formation and black hole accretion. The simulation suite includes runs performed in volumes ranging from 25 to 100 comoving megaparsecs per side, with numerical resolution chosen to marginally resolve the Jeans mass of the gas at the star formation threshold. The free parameters of the subgrid models for feedback are calibrated to the redshift z=0 galaxy stellar mass function, galaxy sizes and black hole mass - stellar mass relation. The simulations have been shown to match a wide range of observations for present-day and higher-redshift galaxies. The raw particle data have been used to link galaxies across redshifts by creating merger trees. The indexing of the tree produces a simple way to connect a galaxy at one redshift to its progenitors at higher redshift and to identify its descendants at lower redshift. In this paper we present a relational database which we are making available for general use. A large number of properties of haloes and galaxies and their merger trees are stored in the database, including stellar masses, star formation rates, metallicities, photometric measurements and mock gri images. Complex queries can be created to explore the evolution of more than 10^5 galaxies, examples of which are provided in appendix. (abridged), Comment: 12 pages, 3 figures + appendices. The simulation data is available at http://www.eaglesim.org/database.php (comments welcome). Paper accepted to AstronomyComputing. Note there is a typo in the published version, Section 4.1, replace 3/2 with 2/3 for velocity dispersion

We present a new version of the GALFORM semi-analytical model of galaxy formation. This brings together several previous developments of GALFORM into a single unified model, including a different initial mass function (IMF) in quiescent star formation and in starbursts, feedback from active galactic nuclei supressing gas cooling in massive halos, and a new empirical star formation law in galaxy disks based on their molecular gas content. In addition, we have updated the cosmology, introduced a more accurate treatment of dynamical friction acting on satellite galaxies, and updated the stellar population model. The new model is able to simultaneously explain both the observed evolution of the K-band luminosity function and stellar mass function, and the number counts and redshift distribution of sub-mm galaxies selected at 850 mu. This was not previously achieved by a single physical model within the LambdaCDM framework, but requires having an IMF in starbursts that is somewhat top-heavy. The new model is tested against a wide variety of observational data covering wavelengths from the far-UV to sub-mm, and redshifts from z=0 to z=6, and is found to be generally successful. These observations include the optical and near-IR luminosity functions, HI mass function, fraction of early type galaxies, Tully-Fisher, metallicity-luminosity and size-luminosity relations at z=0, as well as far-IR number counts, and far-UV luminosity functions at z ~ 3-6. [abridged], Comment: Accepted for publication in MNRAS. Revised in response to referee; minor changes only (including some figures), no change in results or conclusions. 62 pages (44 without appendices); 57 figures (32 without appendices)

The recent detection of a 3.5 keV X-ray line from the centres of galaxies and clusters by Bulbul et al. (2014a) and Boyarsky et al. (2014a) has been interpreted as emission from the decay of 7 keV sterile neutrinos which could make up the (warm) dark matter (WDM). As part of the COpernicus COmplexio (COCO) programme, we investigate the properties of dark matter haloes formed in a high-resolution cosmological $N$-body simulation from initial conditions similar to those expected in a universe in which the dark matter consists of 7 keV sterile neutrinos. This simulation and its cold dark matter (CDM) counterpart have $\sim13.4$bn particles, each of mass $\sim 10^5\, h^{-1} M_\odot$, providing detailed information about halo structure and evolution down to dwarf galaxy mass scales. Non-linear structure formation on small scales ($M_{200}\, \leq\, 2 \times 10^9\,h^{-1}\,M_\odot$) begins slightly later in COCO-Warm than in COCO-Cold. The halo mass function at the present day in the WDM model begins to drop below its CDM counterpart at a mass $\sim 2 \times 10^{9}\,h^{-1}\,M_\odot$ and declines very rapidly towards lower masses so that there are five times fewer haloes of mass $M_{200}= 10^{8}\,h^{-1}\,M_\odot$ in COCO-Warm than in COCO-Cold. Halo concentrations on dwarf galaxy scales are correspondingly smaller in COCO-Warm, and we provide a simple functional form that describes its evolution with redshift. The shapes of haloes are similar in the two cases, but the smallest haloes in COCO-Warm rotate slightly more slowly than their CDM counterparts., Comment: 16 pages, 14 figures, replaced a typo in Table 1

We present results from thirteen cosmological simulations that explore the parameter space of the "Evolution and Assembly of GaLaxies and their Environments" (EAGLE) simulation project. Four of the simulations follow the evolution of a periodic cube L = 50 cMpc on a side, and each employs a different subgrid model of the energetic feedback associated with star formation. The relevant parameters were adjusted so that the simulations each reproduce the observed galaxy stellar mass function at z = 0.1. Three of the simulations fail to form disc galaxies as extended as observed, and we show analytically that this is a consequence of numerical radiative losses that reduce the efficiency of stellar feedback in high-density gas. Such losses are greatly reduced in the fourth simulation - the EAGLE reference model - by injecting more energy in higher density gas. This model produces galaxies with the observed size distribution, and also reproduces many galaxy scaling relations. In the remaining nine simulations, a single parameter or process of the reference model was varied at a time. We find that the properties of galaxies with stellar mass <~ M* (the "knee" of the galaxy stellar mass function) are largely governed by feedback associated with star formation, while those of more massive galaxies are also controlled by feedback from accretion onto their central black holes. Both processes must be efficient in order to reproduce the observed galaxy population. In general, simulations that have been calibrated to reproduce the low-redshift galaxy stellar mass function will still not form realistic galaxies, but the additional requirement that galaxy sizes be acceptable leads to agreement with a large range of observables., Comment: Accepted for publication by MNRAS. v2: minor changes from submitted manuscript

We present predictions for the two-point correlation function of galaxy clustering as a function of stellar mass, computed using two new versions of the GALFORM semi-analytic galaxy formation model. These models make use of a high resolution, large volume N-body simulation, set in the WMAP7 cosmology. One model uses a universal stellar initial mass function (IMF), while the other assumes different IMFs for quiescent star formation and bursts. Particular consideration is given to how the assumptions required to estimate the stellar masses of observed galaxies (such as the choice of IMF, stellar population synthesis model and dust extinction) influence the perceived dependence of galaxy clustering on stellar mass. Broad-band spectral energy distribution fitting is carried out to estimate stellar masses for the model galaxies in the same manner as in observational studies. We show clear differences between the clustering signals computed using the true and estimated model stellar masses. As such, we highlight the importance of applying our methodology to compare theoretical models to observations. We introduce an alternative scheme for the calculation of the merger timescales for satellite galaxies in GALFORM, which takes into account the dark matter subhalo information from the simulation. This reduces the amplitude of small-scale clustering. The new merger scheme offers improved or similar agreement with observational clustering measurements, over the redshift range 0 < z < 0.7. We find reasonable agreement with clustering measurements from GAMA, but find larger discrepancies for some stellar mass ranges and separation scales with respect to measurements from SDSS and VIPERS, depending on the GALFORM model used., Comment: Accepted for publication in MNRAS; 20 pages, 9 figure, 2 tables

The "Lambda Cold Dark Matter" (LCDM) model of cosmic structure formation is eminently falsifiable: once its parameters are fixed on large scales, it becomes testable in the nearby Universe. Observations within our Local Group of galaxies, including the satellite populations of the Milky Way and Andromeda, appear to contradict LCDM predictions: there are far fewer satellite galaxies than dark matter halos (the "missing satellites" problem), galaxies seem to avoid the largest substructures (the "too big to fail" problem), and the brightest satellites appear to orbit their host galaxies on a thin plane (the "planes of satellites" problem). We present results from the first hydrodynamic simulations of the Local Group that match the observed abundance of galaxies. We find that when baryonic and dark matter are followed simultaneously in the context of a realistic galaxy formation model, all three "problems" are resolved within the LCDM paradigm., Comment: 14 pages, 4 figures

We introduce the Virgo Consortium's EAGLE project, a suite of hydrodynamical simulations that follow the formation of galaxies and black holes in representative volumes. We discuss the limitations of such simulations in light of their finite resolution and poorly constrained subgrid physics, and how these affect their predictive power. One major improvement is our treatment of feedback from massive stars and AGN in which thermal energy is injected into the gas without the need to turn off cooling or hydrodynamical forces, allowing winds to develop without predetermined speed or mass loading factors. Because the feedback efficiencies cannot be predicted from first principles, we calibrate them to the z~0 galaxy stellar mass function and the amplitude of the galaxy-central black hole mass relation, also taking galaxy sizes into account. The observed galaxy mass function is reproduced to $\lesssim 0.2$ dex over the full mass range, $10^8 < M_*/M_\odot \lesssim 10^{11}$, a level of agreement close to that attained by semi-analytic models, and unprecedented for hydrodynamical simulations. We compare our results to a representative set of low-redshift observables not considered in the calibration, and find good agreement with the observed galaxy specific star formation rates, passive fractions, Tully-Fisher relation, total stellar luminosities of galaxy clusters, and column density distributions of intergalactic CIV and OVI. While the mass-metallicity relations for gas and stars are consistent with observations for $M_* \gtrsim 10^9 M_\odot$, they are insufficiently steep at lower masses. The gas fractions and temperatures are too high for clusters of galaxies, but for groups these discrepancies can be resolved by adopting a higher heating temperature in the subgrid prescription for AGN feedback. EAGLE constitutes a valuable new resource for studies of galaxy formation., Comment: Accepted for publication in MNRAS. V2: Minor changes. For images and videos, see http://eagle.strw.leidenuniv.nl/ and http://icc.dur.ac.uk/Eagle/

We present a new algorithm which groups the subhaloes found in cosmological N- body simulations by structure finders such as SUBFIND into dark matter haloes whose formation histories are strictly hierarchical. One advantage of these `Dhaloes' over the commonly used friends-of-friends (FoF) haloes is that they retain their individual identity in cases when FoF haloes are artificially merged by tenuous bridges of particles or by an overlap of their outer diffuse haloes. Dhaloes are thus well-suited for modelling galaxy formation and their merger trees form the basis of the Durham semi-analytic galaxy formation model, GALFORM. Applying the Dhalo construction to the LambdaCDM Millennium-2 simulation we find that approximately 90% of Dhaloes have a one-to-one, bijective match with a corresponding FoF halo. The remaining 10% are typically secondary components of large FoF haloes. Although the mass functions of both types of haloes are similar, the mass of Dhaloes correlates much more tightly with the virial mass, M200, than FoF haloes. Approximately 80% of FoF and bijective and non-bijective Dhaloes are relaxed according to standard criteria. For these relaxed haloes all three types have similar concentration-M200 relations and, at fixed mass, the concentration distributions are described accurately by log-normal distributions., Comment: 23 pages, 17figures, improved version which matches the version accepted for publication in MNRAS

We introduce a method for constructing end-to-end mock galaxy catalogues using a semi-analytical model of galaxy formation, applied to the halo merger trees extracted from a cosmological N-body simulation. The mocks that we construct are lightcone catalogues, in which a galaxy is placed according to the epoch at which it first enters the past lightcone of the observer, and incorporate the evolution of galaxy properties with cosmic time. We determine the position between the snapshot outputs at which a galaxy enters the observer's lightcone by interpolation. As an application, we consider the effectiveness of the BzK colour selection technique, which was designed to isolate galaxies in the redshift interval 1.4

We present a model for the satellites of the Milky Way in which galaxy formation is followed using semi-analytic techniques applied to the six high-resolution N-body simulations of galactic halos of the Aquarius project. The model, calculated using the Galform code, incorporates improved treatments of the relevant physics in the LambdaCDM cosmogony, particularly a self-consistent calculation of reionization by UV photons emitted by the forming galaxy population, including the progenitors of the central galaxy. Along the merger tree of each halo, the model calculates gas cooling (by Compton scattering off cosmic microwave background photons, molecular hydrogen and atomic processes), gas heating (from hydrogen photoionization and supernova energy), star formation and evolution. The evolution of the intergalactic medium is followed simultaneously with that of the galaxies. Star formation in the more massive progenitor subhalos is suppressed primarily by supernova feedback, while for smaller subhalos it is suppressed primarily by photoionization due to external and internal sources. The model is constrained to match a wide range of properties of the present day galaxy population as a whole, but at high redshift it requires an escape fraction of UV photons near unity in order completely to reionize the universe by redshift z ~ 8. In the most successful model the local sources photoionize the pre-galactic region completely by z ~ 10. In addition to the luminosity function of Milky Way satellites, the model matches their observed luminosity-metallicity relation, their radial distribution and the inferred values of the mass within 300 pc, which in the models increase slowly but significantly with luminosity. There is a large variation in satellite properties from halo to halo, with the luminosity function, for example, varying by a factor of ~ 2 among the six simulations., Comment: The paper contains 23 pages, 13 figures. Accepted to MNRAS (2011, June 28)

The highly flattened distribution of satellite galaxies in the Milky Way presents a number of puzzles. Firstly, its polar alignment stands out from the planar alignments commonly found in other galaxies. Secondly, recent proper motion measurements reveal that the orbital angular momentum of at least 3, and possibly as many as 8, of the Milky Ways satellites point (within 30 degrees) along the axis of their flattened configuration, suggesting some form of coherent motion. In this paper we use a high resolution cosmological simulation to investigate whether this pattern conflicts with the expectations of the cold dark matter model of structure formation. We find that this seemingly unlikely set up occurs often: approximately 35% of the time we find systems in which the angular momentum of 3 individual satellites point along, or close to, the short axis of the satellite distribution. In addition, in 30% of the systems we find that the net angular momentum of the 6 best aligned satellites lies within 35 degrees of the short axis of the satellite distribution, as observed for the Milky Way., Comment: 12 Pages, 10 Figures, Submitted to MNRAS

Current models of galaxy formation predict satellite galaxies in groups and clusters that are redder than observed. We investigate the effect on the colours of satellite galaxies produced by the ram pressure stripping of their hot gaseous atmospheres as the satellites orbit within their parent halo. We incorporate a model of the stripping process based on detailed hydrodynamic simulations within the Durham semi-analytic model of galaxy formation. The simulations show that the environment in groups and clusters is less aggressive than previously assumed. The main uncertainty in the model is the treatment of gas expelled by supernovae. With reasonable assumptions for the stripping of this material, we find that satellite galaxies are able to retain a significant fraction of their hot gas for several Gigayears, thereby replenishing their reservoirs of cold, star forming gas and remaining blue for a relatively long period of time. A bimodal distribution of galaxy colours, similar to that observed in SDSS data, is established and the colours of the satellite galaxies are in good agreement with the data. In addition, our model naturally accounts for the observed dependence of satellite colours on environment, from small groups to high mass clusters., Comment: Minor revisions to v1. (Note: The public version of the model is available at http://galaxy-catalogue.dur.ac.uk:8080/Millennium/)

The 11 known satellite galaxies within 250 kpc of the Milky Way lie close to a great circle on the sky. We use high resolution N-body simulations of galactic dark matter halos to test if this remarkable property can be understood within the context of the cold dark matter cosmology. We construct halo merger trees from the simulations and use a semianalytic model to follow the formation of satellite galaxies. We find that in all 6 of our simulations, the 11 brightest satellites are indeed distributed along thin, disk-like structures analogous to that traced by the Milky Way's satellites. This is in sharp contrast to the overall distributions of dark matter in the halo and of subhalos within it which, although triaxial, are not highly aspherical. We find that the spatial distribution of satellites is significantly different from that of the most massive subhalos but is similar to that of the subset of subhalos that had the most massive progenitors at earlier times. The elongated disk-like structure delineated by the satellites has its long axis aligned with the major axis of the dark matter halo. We interpret our results as reflecting the preferential infall of satellites along the spines of a few filaments of the cosmic web., Comment: 7 pages, 5 figures. Submitted to MNRAS

We develop a hybrid galaxy formation model which uses outputs from an N-body simulation to follow the merger histories (or ``merger trees'') of dark matter halos and treats baryonic processes, such as the cooling of gas within halos and subsequent star formation, using the semi-analytic model of Cole et al. We compare this hybrid model to an otherwise identical model which utilises merger tree realisations generated by a Monte-Carlo algorithm and find that, apart from the limited mass resolution imposed by the N-body particle mass, the only significant differences between the models are due to the known discrepancy between the distribution of halo progenitor masses predicted by extended Press Schechter theory and that found in N-body simulations. We investigate the effect of limited mass resolution on the hybrid model by comparing to a purely semi-analytic model with greatly improved mass resolution. We find that the mass resolution of the simulation we use, which has a particle mass of 1.4x10^10 Msolar/h, is insufficient to produce a reasonable luminosity function for galaxies with magnitudes in the b_J band fainter than -17., Comment: 10 pages, 4 figures, accepted by MNRAS. Previously formed the first half of astro-ph/0202485 which was split at the referees request

We compare the results of two techniques used to calculate the evolution of cooling gas during galaxy formation: Smooth Particle Hydrodynamics (SPH) simulations and semi-analytic modelling. We improve upon the earlier statistical comparison of Benson et al. by taking halo merger histories from the dark matter component of the SPH simulation, which allows us to compare the evolution of galaxies on an object-by-object basis in the two treatments. We use a ``stripped-down'' version of the semi-analytic model described by Helly et al. which includes only shock heating and radiative cooling of gas and which is adjusted to mimic the resolution and other parameters of a comparison SPH simulation as closely as possible. We compare the total mass of gas that cools in halos of different mass as a function of redshift as well as the masses and spatial distribution of individual ``galaxies.'' At redshift z=0, the cooled gas mass in well-resolved halos agrees remarkably well (to better than ~20%) in the SPH simulation and stripped-down semi-analytic model. At high redshift, resolution effects in the simulation become increasingly important and, as a result, more gas tends to cool in low mass halos in the SPH simulation than in the semi-analytic model. The cold gas mass function of individual galaxies in the two treatments at z=0 also agrees very well and, when the effects of mergers are accounted for, the masses of individual galaxies and their 2-point correlation functions are also in excellent agreement in the two treatments. Thus, our comparison confirms and extends the earlier conclusion of Benson et al. that SPH simulations and semi-analytic models give consistent results for the evolution of cooling galactic gas., Comment: 14 pages, 9 figures, accepted by MNRAS. This paper was split at the referees request - the semi-analytic methods used here are now described in a separate paper, astro-ph/0210141