29 results on '"Hoinka, Jan"'
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2. The Bioinformatics of Aptamers: HT-SELEX Analysis with AptaSUITE
3. AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments
4. AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments
5. AptaCluster – A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application
6. A 2′FY-RNA Motif Defines an Aptamer for Ebolavirus Secreted Protein
7. RepairSig: Deconvolution of DNA damage and repair contributions to the mutational landscape of cancer
8. Immunotherapy using IgE or CAR T cells for cancers expressing the tumor antigen SLC3A2
9. DNA Aptamers for Early Detection of Ebolavirus
10. RepairSig: Deconvolution of DNA damage and repair contributions to the mutational landscape of cancer
11. Identification of sequence–structure RNA binding motifs for SELEX-derived aptamers
12. Embedding gene sets in low-dimensional space
13. Direct, Competitive Comparison of Linear, Monocyclic, and Bicyclic Libraries Using mRNA Display
14. AptaBlocks Online: A Web-Based Toolkit for the In Silico Design of Oligonucleotide Sticky Bridges
15. Co-SELECT reveals sequence non-specific contribution of DNA shape to transcription factor binding in vitro
16. Subpopulation Detection and Their Comparative Analysis across Single-Cell Experiments with scPopCorn
17. Accurate sub-population detection and mapping across single cell experiments with PopCorn
18. Co-SELECT reveals sequence non-specific contribution of DNA shape to transcription factor binding in vitro
19. AptaBlocks: Designing RNA complexes and accelerating RNA-based drug delivery systems
20. AptaSUITE: A Full-Featured Bioinformatics Framework for the Comprehensive Analysis of Aptamers from HT-SELEX Experiments
21. AptaBlocks: Accelerating the Design of RNA-based Drug Delivery Systems
22. Highly Constrained Bicyclic Scaffolds for the Discovery of Protease-Stable Peptides via mRNA Display
23. AptaPLEX – A dedicated, multithreaded demultiplexer for HT-SELEX data
24. AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments
25. Identifying high-affinity aptamer ligands with defined cross-reactivity using high-throughput guided systematic evolution of ligands by exponential enrichment
26. Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery
27. AptaGUI—A Graphical User Interface for the Efficient Analysis of HT-SELEX Data
28. Highly Constrained Bicyclic Scaffolds for the Discovery of Protease-Stable Peptides viamRNA Display
29. The Bioinformatics of Aptamers: HT-SELEX Analysis with AptaSUITE.
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