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2. Cetaceans of the Galapagos Archipelago: Species in Constant Change and the Importance of a Standardized and Long-Term Citizen Science Program

Author

Alarcón-Ruales, Daniela, Denkinger, Judith, Zurita-Arthos, Leo, Herrera, Salome, Díaz-Pazmiño, Santiago, Espinoza, Eduardo, Muñoz Pérez, Juan Pablo, Holmes, Bonnie J., Townsend, Kathy A., Walsh, Stephen J., Series Editor, Mena, Carlos F., Series Editor, Stewart, Jill R., editor, and Muñoz Pérez, Juan Pablo, editor

Published
2023
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4. Genomic population structure of great hammerhead sharks (Sphyrna mokarran) across the Indo-Pacific

Author

Brunjes, Naomi L., primary, Williams, Samuel M., additional, Levengood, Alexis L., additional, Broadhurst, Matt K., additional, Raoult, Vincent, additional, Harry, Alastair V., additional, Braccini, Matias, additional, Green, Madeline E., additional, Spaet, Julia L. Y., additional, Travers, Michael J., additional, and Holmes, Bonnie J., additional

Published
2024
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6. Reply to: Shark mortality cannot be assessed by fishery overlap alone

Author

Queiroz, Nuno, Humphries, Nicolas E., Couto, Ana, Vedor, Marisa, da Costa, Ivo, Sequeira, Ana M. M., Mucientes, Gonzalo, Santos, António M., Abascal, Francisco J., Abercrombie, Debra L., Abrantes, Katya, Acuña-Marrero, David, Afonso, André S., Afonso, Pedro, Anders, Darrell, Araujo, Gonzalo, Arauz, Randall, Bach, Pascal, Barnett, Adam, Bernal, Diego, Berumen, Michael L., Lion, Sandra Bessudo, Bezerra, Natalia P. A., Blaison, Antonin V., Block, Barbara A., Bond, Mark E., Bonfil, Ramon, Bradford, Russell W., Braun, Camrin D., Brooks, Edward J., Brooks, Annabelle, Brown, Judith, Bruce, Barry D., Byrne, Michael E., Campana, Steven E., Carlisle, Aaron B., Chapman, Demian D., Chapple, Taylor K., Chisholm, John, Clarke, Christopher R., Clua, Eric G., Cochran, Jesse E. M., Crochelet, Estelle C., Dagorn, Laurent, Daly, Ryan, Cortés, Daniel Devia, Doyle, Thomas K., Drew, Michael, Duffy, Clinton A. J., Erikson, Thor, Espinoza, Eduardo, Ferreira, Luciana C., Ferretti, Francesco, Filmalter, John D., Fischer, G. Chris, Fitzpatrick, Richard, Fontes, Jorge, Forget, Fabien, Fowler, Mark, Francis, Malcolm P., Gallagher, Austin J., Gennari, Enrico, Goldsworthy, Simon D., Gollock, Matthew J., Green, Jonathan R., Gustafson, Johan A., Guttridge, Tristan L., Guzman, Hector M., Hammerschlag, Neil, Harman, Luke, Hazin, Fábio H. V., Heard, Matthew, Hearn, Alex R., Holdsworth, John C., Holmes, Bonnie J., Howey, Lucy A., Hoyos, Mauricio, Hueter, Robert E., Hussey, Nigel E., Huveneers, Charlie, Irion, Dylan T., Jacoby, David M. P., Jewell, Oliver J. D., Johnson, Ryan, Jordan, Lance K. B., Joyce, Warren, Keating Daly, Clare A., Ketchum, James T., Klimley, A. Peter, Kock, Alison A., Koen, Pieter, Ladino, Felipe, Lana, Fernanda O., Lea, James S. E., Llewellyn, Fiona, Lyon, Warrick S., MacDonnell, Anna, Macena, Bruno C. L., Marshall, Heather, McAllister, Jaime D., Meÿer, Michael A., Morris, John J., Nelson, Emily R., Papastamatiou, Yannis P., Peñaherrera-Palma, Cesar, Pierce, Simon J., Poisson, Francois, Quintero, Lina Maria, Richardson, Andrew J., Rogers, Paul J., Rohner, Christoph A., Rowat, David R. L., Samoilys, Melita, Semmens, Jayson M., Sheaves, Marcus, Shillinger, George, Shivji, Mahmood, Singh, Sarika, Skomal, Gregory B., Smale, Malcolm J., Snyders, Laurenne B., Soler, German, Soria, Marc, Stehfest, Kilian M., Thorrold, Simon R., Tolotti, Mariana T., Towner, Alison, Travassos, Paulo, Tyminski, John P., Vandeperre, Frederic, Vaudo, Jeremy J., Watanabe, Yuuki Y., Weber, Sam B., Wetherbee, Bradley M., White, Timothy D., Williams, Sean, Zárate, Patricia M., Harcourt, Robert, Hays, Graeme C., Meekan, Mark G., Thums, Michele, Irigoien, Xabier, Eguiluz, Victor M., Duarte, Carlos M., Sousa, Lara L., Simpson, Samantha J., Southall, Emily J., and Sims, David W.

Published
2021
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7. Reply to: Caution over the use of ecological big data for conservation

Author

Queiroz, Nuno, Humphries, Nicolas E., Couto, Ana, Vedor, Marisa, da Costa, Ivo, Sequeira, Ana M. M., Mucientes, Gonzalo, Santos, António M., Abascal, Francisco J., Abercrombie, Debra L., Abrantes, Katya, Acuña-Marrero, David, Afonso, André S., Afonso, Pedro, Anders, Darrell, Araujo, Gonzalo, Arauz, Randall, Bach, Pascal, Barnett, Adam, Bernal, Diego, Berumen, Michael L., Lion, Sandra Bessudo, Bezerra, Natalia P. A., Blaison, Antonin V., Block, Barbara A., Bond, Mark E., Bonfil, Ramon, Braun, Camrin D., Brooks, Edward J., Brooks, Annabelle, Brown, Judith, Byrne, Michael E., Campana, Steven E., Carlisle, Aaron B., Chapman, Demian D., Chapple, Taylor K., Chisholm, John, Clarke, Christopher R., Clua, Eric G., Cochran, Jesse E. M., Crochelet, Estelle C., Dagorn, Laurent, Daly, Ryan, Cortés, Daniel Devia, Doyle, Thomas K., Drew, Michael, Duffy, Clinton A. J., Erikson, Thor, Espinoza, Eduardo, Ferreira, Luciana C., Ferretti, Francesco, Filmalter, John D., Fischer, G. Chris, Fitzpatrick, Richard, Fontes, Jorge, Forget, Fabien, Fowler, Mark, Francis, Malcolm P., Gallagher, Austin J., Gennari, Enrico, Goldsworthy, Simon D., Gollock, Matthew J., Green, Jonathan R., Gustafson, Johan A., Guttridge, Tristan L., Guzman, Hector M., Hammerschlag, Neil, Harman, Luke, Hazin, Fábio H. V., Heard, Matthew, Hearn, Alex R., Holdsworth, John C., Holmes, Bonnie J., Howey, Lucy A., Hoyos, Mauricio, Hueter, Robert E., Hussey, Nigel E., Huveneers, Charlie, Irion, Dylan T., Jacoby, David M. P., Jewell, Oliver J. D., Johnson, Ryan, Jordan, Lance K. B., Joyce, Warren, Keating Daly, Clare A., Ketchum, James T., Klimley, A. Peter, Kock, Alison A., Koen, Pieter, Ladino, Felipe, Lana, Fernanda O., Lea, James S. E., Llewellyn, Fiona, Lyon, Warrick S., MacDonnell, Anna, Macena, Bruno C. L., Marshall, Heather, McAllister, Jaime D., Meÿer, Michael A., Morris, John J., Nelson, Emily R., Papastamatiou, Yannis P., Peñaherrera-Palma, Cesar, Pierce, Simon J., Poisson, Francois, Quintero, Lina Maria, Richardson, Andrew J., Rogers, Paul J., Rohner, Christoph A., Rowat, David R. L., Samoilys, Melita, Semmens, Jayson M., Sheaves, Marcus, Shillinger, George, Shivji, Mahmood, Singh, Sarika, Skomal, Gregory B., Smale, Malcolm J., Snyders, Laurenne B., Soler, German, Soria, Marc, Stehfest, Kilian M., Thorrold, Simon R., Tolotti, Mariana T., Towner, Alison, Travassos, Paulo, Tyminski, John P., Vandeperre, Frederic, Vaudo, Jeremy J., Watanabe, Yuuki Y., Weber, Sam B., Wetherbee, Bradley M., White, Timothy D., Williams, Sean, Zárate, Patricia M., Harcourt, Robert, Hays, Graeme C., Meekan, Mark G., Thums, Michele, Irigoien, Xabier, Eguiluz, Victor M., Duarte, Carlos M., Sousa, Lara L., Simpson, Samantha J., Southall, Emily J., and Sims, David W.

Published
2021
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8. The future of fish and fisheries in Australia: prioritisation of research needs through a horizon scanning approach.

Author

Williams, Samuel M., Tibbetts, Ian R., and Holmes, Bonnie J.

Subjects
INTRODUCED animals, FISHERY resources, ANIMAL diseases, RESEARCH questions, ESTUARINE fishes
Abstract

Context: In Australia, the health of our marine, estuarine and freshwater fishes are of critical importance. The aquatic and marine ecosystems, and the fishes that occupy them each have an important role in our country's ecological, economic, cultural and social wealth. Climate change, resource over-exploitation, invasive animals and diseases, and habitat degradation are just a few of the burgeoning threats that researchers and managers must address to ensure the prosperity of Australia's natural fisheries resources. In addition, differences in legislative frameworks among jurisdictions hinder our ability to coherently manage fish resources at scales that are relevant biologically, ecologically and socially. Aims: Here, we identify the key research priorities for fish and fisheries research in Australia, across seven thematic fields of study. Methods: Research priorities were evaluated using a horizon scanning approach which identified research questions related to the field of fish and fisheries research in Australia. Key results: A total of 284 unique research questions were categorised and prioritised, resulting in the formation of the top 10 highest priority research questions across each of the seven themes. Conclusions: The outcomes from this work can be used to directly complement ongoing work from research providers working in the field of fish and fisheries as well as the development of new areas of research. Implications: The priorities identified will enable researchers and policy makers to identify critical knowledge gaps, develop collaborative research programs, investigate novel approaches, and to improve transparency around decision-making processes. The health of Australia's fish and fisheries are of critical ecological, economic, cultural and social importance. The horizon scan approach identified key questions across seven themes related to fish and fisheries within Australia which allow researchers to target their skills and further investment towards addressing. [ABSTRACT FROM AUTHOR]

Published
2024
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11. Tiger shark (Galeocerdo cuvier) movement patterns and habitat use determined by satellite tagging in eastern Australian waters

Author

Holmes, Bonnie J., Pepperell, Julian G., Griffiths, Shane P., Jaine, Fabrice R.A., Tibbetts, Ian R., and Bennett, Mike B.

Subjects
Spatial behavior in animals -- Research, Biological sciences
Abstract

Partial migration is considered ubiquitous among vertebrates, but little is known about the movements of oceanodromous apex predators such as sharks, particularly at their range extents. PAT-Mk10 and SPOT5 electronic tags were used to investigate tiger shark (Galeocerdo cuvier) spatial dynamics, site fidelity and habitat use off eastern Australia between April 2007 and May 2013. Of the 18 tags deployed, 15 recorded information on depth and/or temperature, and horizontal movements. Tracking times ranged between four and 408 days, with two recovered pop-up archival tags allowing 63 days of high-resolution archived data to be analysed. Overall mean proportions of time-at-depth revealed that G. cuvier spent the majority of time-at-depths of 500 m) occurred mostly around dawn and dusk, but no definitive daily dive patterns were observed. Horizontal movements were characterised by combinations of resident and transient behaviour that coincided with seasonal changes in water temperature. While the majority of movement activity was focused around continental slope waters, large-scale migration was evident with one individual moving from offshore Sydney, Australia, to New Caledonia (c. 1,800 km) in 48 days. Periods of tiger shark residency outside of Australia's fisheries management zones highlight the potential vulnerability of the species to unregulated fisheries and the importance of cross-jurisdictional arrangements for species' management and conservation., Introduction An understanding of spatio-temporal movements of animals is of central importance when assessing the dynamics and interactions within and between populations (Skov et al. 2010). Migration is a specific [...]

Published
2014
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14. Global spatial risk assessment of sharks under the footprint of fisheries

Author

Queiroz, Nuno, primary, Humphries, Nicolas E., additional, Couto, Ana, additional, Vedor, Marisa, additional, da Costa, Ivo, additional, Sequeira, Ana M. M., additional, Mucientes, Gonzalo, additional, Santos, António M., additional, Abascal, Francisco J., additional, Abercrombie, Debra L., additional, Abrantes, Katya, additional, Acuña-Marrero, David, additional, Afonso, André S., additional, Afonso, Pedro, additional, Anders, Darrell, additional, Araujo, Gonzalo, additional, Arauz, Randall, additional, Bach, Pascal, additional, Barnett, Adam, additional, Bernal, Diego, additional, Berumen, Michael L., additional, Bessudo Lion, Sandra, additional, Bezerra, Natalia P. A., additional, Blaison, Antonin V., additional, Block, Barbara A., additional, Bond, Mark E., additional, Bonfil, Ramón, additional, Bradford, Russell W., additional, Braun, Camrin D., additional, Brooks, Edward J., additional, Brooks, Annabelle, additional, Brown, Judith, additional, Bruce, Barry D., additional, Byrne, Michael E., additional, Campana, Steven E., additional, Carlisle, Aaron B., additional, Chapman, Demian D., additional, Chapple, Taylor K., additional, Chisholm, John, additional, Clarke, Christopher R., additional, Clua, Eric G., additional, Cochran, Jesse E. M., additional, Crochelet, Estelle C., additional, Dagorn, Laurent, additional, Daly, Ryan, additional, Cortés, Daniel Devia, additional, Doyle, Thomas K., additional, Drew, Michael, additional, Duffy, Clinton A. J., additional, Erikson, Thor, additional, Espinoza, Eduardo, additional, Ferreira, Luciana C., additional, Ferretti, Francesco, additional, Filmalter, John D., additional, Fischer, G. Chris, additional, Fitzpatrick, Richard, additional, Fontes, Jorge, additional, Forget, Fabien, additional, Fowler, Mark, additional, Francis, Malcolm P., additional, Gallagher, Austin J., additional, Gennari, Enrico, additional, Goldsworthy, Simon D., additional, Gollock, Matthew J., additional, Green, Jonathan R., additional, Gustafson, Johan A., additional, Guttridge, Tristan L., additional, Guzman, Hector M., additional, Hammerschlag, Neil, additional, Harman, Luke, additional, Hazin, Fábio H. V., additional, Heard, Matthew, additional, Hearn, Alex R., additional, Holdsworth, John C., additional, Holmes, Bonnie J., additional, Howey, Lucy A., additional, Hoyos, Mauricio, additional, Hueter, Robert E., additional, Hussey, Nigel E., additional, Huveneers, Charlie, additional, Irion, Dylan T., additional, Jacoby, David M. P., additional, Jewell, Oliver J. D., additional, Johnson, Ryan, additional, Jordan, Lance K. B., additional, Jorgensen, Salvador J., additional, Joyce, Warren, additional, Keating Daly, Clare A., additional, Ketchum, James T., additional, Klimley, A. Peter, additional, Kock, Alison A., additional, Koen, Pieter, additional, Ladino, Felipe, additional, Lana, Fernanda O., additional, Lea, James S. E., additional, Llewellyn, Fiona, additional, Lyon, Warrick S., additional, MacDonnell, Anna, additional, Macena, Bruno C. L., additional, Marshall, Heather, additional, McAllister, Jaime D., additional, McAuley, Rory, additional, Meÿer, Michael A., additional, Morris, John J., additional, Nelson, Emily R., additional, Papastamatiou, Yannis P., additional, Patterson, Toby A., additional, Peñaherrera-Palma, Cesar, additional, Pepperell, Julian G., additional, Pierce, Simon J., additional, Poisson, Francois, additional, Quintero, Lina Maria, additional, Richardson, Andrew J., additional, Rogers, Paul J., additional, Rohner, Christoph A., additional, Rowat, David R. L., additional, Samoilys, Melita, additional, Semmens, Jayson M., additional, Sheaves, Marcus, additional, Shillinger, George, additional, Shivji, Mahmood, additional, Singh, Sarika, additional, Skomal, Gregory B., additional, Smale, Malcolm J., additional, Snyders, Laurenne B., additional, Soler, German, additional, Soria, Marc, additional, Stehfest, Kilian M., additional, Stevens, John D., additional, Thorrold, Simon R., additional, Tolotti, Mariana T., additional, Towner, Alison, additional, Travassos, Paulo, additional, Tyminski, John P., additional, Vandeperre, Frederic, additional, Vaudo, Jeremy J., additional, Watanabe, Yuuki Y., additional, Weber, Sam B., additional, Wetherbee, Bradley M., additional, White, Timothy D., additional, Williams, Sean, additional, Zárate, Patricia M., additional, Harcourt, Robert, additional, Hays, Graeme C., additional, Meekan, Mark G., additional, Thums, Michele, additional, Irigoien, Xabier, additional, Eguiluz, Victor M., additional, Duarte, Carlos M., additional, Sousa, Lara L., additional, Simpson, Samantha J., additional, Southall, Emily J., additional, and Sims, David W., additional

Published
2019
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15. Genetic population structure and demography of an apex predator, the tiger shark Galeocerdo cuvier

Author

Pirog, Agathe, primary, Jaquemet, Sébastien, additional, Ravigné, Virginie, additional, Cliff, Geremy, additional, Clua, Eric, additional, Holmes, Bonnie J., additional, Hussey, Nigel E., additional, Nevill, John E. G., additional, Temple, Andrew J., additional, Berggren, Per, additional, Vigliola, Laurent, additional, and Magalon, Hélène, additional

Published
2019
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19. Evidence of naturalisation of the invasive jaguar cichlid Parachromis managuensis (Günther, 1867), in Queensland, Australia.

Author

Holmes, Bonnie J., Williams, Samuel M., and Power, Trent N.

Subjects
FRESHWATER fishes, GEOLOGICAL surveys, WATERSHEDS, ENDANGERED species, ECOSYSTEM health, INTRODUCED species
Abstract

The introduction and spread of non-native species poses a significant threat to the health of freshwater ecosystems, and has recently been identified as the single biggest danger to threatened species survival in Australia. Notwithstanding, the importation, trade and keeping of exotic and potentially invasive freshwater fishes in Australia is significant, resulting in greater propagule pressure and higher risk for deliberate or incidental release into native waterways. The jaguar cichlid (Parachromis managuensis) is an invasive cichlid that has established non-native populations in many countries throughout the world. In December 2014, the Department of Agriculture and Fisheries in Queensland was notified of an incursion of jaguar cichlids in a stormwater retention dam in the Pioneer River Catchment, Mackay, Queensland. Rotenone was applied to the dam in January 2015, and around 200 jaguar cichlid specimens at various life history stages were destroyed. Follow up surveys into mid-2015 did not detect the presence of any jaguar cichlid in the dam or in nearby creeks. In September 2017, the Department was notified of a wild capture of a mature jaguar cichlid in Fursden Creek, 1.5 km from the original incursion site. Follow up surveys in 2018/19 have also detected jaguar cichlid juveniles in surrounding tributaries, indicating successful establishment and naturalisation of the species in Australia for the first time. [ABSTRACT FROM AUTHOR]

Published
2020
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20. Combining abundance and performance data reveals how temperature regulates coastal occurrences and activity of a roaming apex predator

Author

Payne, Nicholas L., primary, Meyer, Carl G., additional, Smith, James A., additional, Houghton, Jonathan D. R., additional, Barnett, Adam, additional, Holmes, Bonnie J., additional, Nakamura, Itsumi, additional, Papastamatiou, Yannis P., additional, Royer, Mark A., additional, Coffey, Daniel M., additional, Anderson, James M., additional, Hutchinson, Melanie R., additional, Sato, Katsufumi, additional, and Halsey, Lewis G., additional

Published
2018
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23. The trophic role of a large marine predator, the tiger shark Galeocerdo cuvier

Author

Ferreira, Luciana C., primary, Thums, Michele, additional, Heithaus, Michael R., additional, Barnett, Adam, additional, Abrantes, Kátya G., additional, Holmes, Bonnie J., additional, Zamora, Lara M., additional, Frisch, Ashley J., additional, Pepperell, Julian G., additional, Burkholder, Derek, additional, Vaudo, Jeremy, additional, Nowicki, Robert, additional, Meeuwig, Jessica, additional, and Meekan, Mark G., additional

Published
2017
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31. First Record of a Piebald Bottlenose Dolphin (Tursiops truncatus) in Australian Waters.

Author

Hume, Georgina V., Levengood, Alexis L., Keane, Melina J., and Holmes, Bonnie J.

Subjects
*BOTTLENOSE dolphin, *AQUATIC mammals, *ANIMAL behavior, *MARINE mammals, *RARE mammals, *C-kit protein
Abstract

The article discusses about a typical coloration in marine mammals, particularly piebaldism in common bottlenose dolphins. Topic include It highlights the rarity of such occurrences, emphasizes the ecological implications, and presents the first documented case of a piebald dolphin in Australian waters during cetacean surveys in Hervey Bay, Queensland.

Published
2024
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