92 results on '"Hongyu Ru"'
Search Results
2. Detection of gut microbiota and pathogen produced N-acyl homoserine in host circulation and tissues
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Jingchuan Xue, Liang Chi, Pengcheng Tu, Yunjia Lai, Chih-Wei Liu, Hongyu Ru, and Kun Lu
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Microbial ecology ,QR100-130 - Abstract
Abstract Recent studies suggest that quorum-sensing molecules may play a role in gut microbiota-host crosstalk. However, whether microbiota produces quorum-sensing molecules and whether those molecules can trans-kingdom transport to the host are still unknown. Here, we develop a UPLC-MS/MS-based assay to screen the 27 N-acyl homoserine lactones (AHLs) in the gut microbiota and host. Various AHL molecules are exclusively detected in the cecal contents, sera and livers from conventionally-raised mice but cannot be detected in germ-free mice. Pathogen-produced C4-HSL is detected in the cecal contents and sera of Citrobacter rodentium (C. rodentium)-infected mice, but not found in uninfected controls. Moreover, C. rodentium infection significantly increases the level of multiple AHL molecules in sera. Our findings demonstrate that both commensal and pathogenic bacteria, can produce AHLs that can be detected in host bodies, suggesting that quorum-sensing molecules could be a group of signaling molecules in trans-kingdom microbiota-host crosstalk.
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- 2021
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3. A Black Raspberry-Rich Diet Protects From Dextran Sulfate Sodium-Induced Intestinal Inflammation and Host Metabolic Perturbation in Association With Increased Aryl Hydrocarbon Receptor Ligands in the Gut Microbiota of Mice
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Pengcheng Tu, Liang Chi, Xiaoming Bian, Bei Gao, Hongyu Ru, and Kun Lu
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black raspberry (Rubus occidentalis) ,gut microbiota ,aryl hydrocarbon receptor (AHR) ,metabolomics ,inflammation ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Dietary modulation of the gut microbiota recently received considerable attention, and ligand activation of aryl hydrocarbon receptor (AHR) plays a pivotal role in intestinal immunity. Importantly, black raspberry (BRB, Rubus occidentalis) is associated with a variety of beneficial health effects. We aim to investigate effects of a BRB-rich diet on dextran sulfate sodium (DSS)-induced intestinal inflammation and to determine whether its consequent anti-inflammatory effects are relevant to modulation of the gut microbiota, especially its production of AHR ligands. A mouse model of DSS-induced intestinal inflammation was used in the present study. C57BL/6J mice were fed either AIN-76A or BRB diet. Composition and functions of the gut microbiota were assessed by 16S rRNA sequencing and comparative metagenome analysis. Metabolic profiles of host and the gut microbiome were assessed by serum and fecal metabolomic profiling and identification. BRB diet was found to ameliorate DSS-induced intestinal inflammation and host metabolic perturbation. BRB diet also protected from DSS-induced perturbation in diversity and composition in the gut microbiota. BRB diet promoted AHR ligand production by the gut microbiota, as revealed by increased levels of fecal AHR activity in addition to increased levels of two known AHR ligands, hemin and biliverdin. Accordingly, enrichment of bacterial genes and pathways responsible for production of hemin and biliverdin were found, specific gut bacteria that are highly correlated with abundances of hemin and biliverdin were also identified. BRB dietary intervention ameliorated intestinal inflammation in mice in association with promotion of AHR ligand production by the gut microbiota.
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- 2022
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4. High-Resolution Metabolomics of 50 Neurotransmitters and Tryptophan Metabolites in Feces, Serum, and Brain Tissues Using UHPLC-ESI‑Q Exactive Mass Spectrometry
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Yunjia Lai, Chih-Wei Liu, Liang Chi, Hongyu Ru, and Kun Lu
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Chemistry ,QD1-999 - Published
- 2021
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5. Association between anesthesia duration and outcome in dogs with surgically treated acute severe spinal cord injury caused by thoracolumbar intervertebral disk herniation
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Joe Fenn, Hongyu Ru, Nick D. Jeffery, Sarah Moore, Andrea Tipold, Franz J. Soebbeler, Adriano Wang‐Leandro, Christopher L. Mariani, Peter J. Early, Karen R. Muñana, and Natasha J. Olby
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canine ,extrusion ,hemilaminectomy ,prognosis ,surgery ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Retrospective research recently identified a possible relationship between duration of surgery and outcome in severely affected dogs treated surgically for acute thoracolumbar intervertebral disk herniation (TL‐IVDH). Hypothesis That increased duration of surgery is associated with poorer outcome in dogs with absent pain perception treated surgically for TL‐IVDH. Animals Two hundred ninety‐seven paraplegic dogs with absent pain perception surgically treated for acute TL‐IVDH. Methods Retrospective cohort study. Medical records of 5 institutions were reviewed. Inclusion criteria were paraplegia with absence of pain perception, surgical treatment of TL‐IVDH, and 1‐year postoperative outcome (ambulatory: yes or no). Canine data, outcome, and surgery and total anesthesia duration were retrieved. Results In this study, 183/297 (61.6%) dogs were ambulatory within 1 year, 114 (38.4%) dogs failed to recover, including 74 dogs (24.9%) euthanized because of progressive myelomalacia. Median anesthesia duration in dogs that regained ambulation within 1 year of surgery (4.0 hours, interquartile range [IQR] 3.2‐5.1) was significantly shorter than those that did not (4.5 hours, IQR 3.7‐5.6, P = .01). Multivariable logistic regression demonstrated a significant negative association between both duration of surgery and total anesthesia time and ambulation at 1 year when controlling for body weight and number of disk spaces operated on. Conclusions and Clinical Importance Findings support a negative association between increased duration of anesthesia and outcome in this group of dogs. However, the retrospective nature of the data does not imply a causal relationship.
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- 2020
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6. Metabolite Profiling of the Gut Microbiome in Mice with Dietary Administration of Black Raspberries
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Pengcheng Tu, Xiaoming Bian, Liang Chi, Jingchuan Xue, Bei Gao, Yunjia Lai, Hongyu Ru, and Kun Lu
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Chemistry ,QD1-999 - Published
- 2020
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7. Risk factors associated with progressive myelomalacia in dogs with complete sensorimotor loss following intervertebral disc extrusion: a retrospective case-control study
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Aude Castel, Natasha J. Olby, Hongyu Ru, Christopher L. Mariani, Karen R. Muñana, and Peter J. Early
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Ascending-descending myelomalacia ,Spinal cord injury ,Intervertebral disk disease ,Paraplegia ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Progressive myelomalacia (PMM) is a usually fatal complication of acute intervertebral disc extrusion (IVDE) in dogs but its risk factors are poorly understood. The objective of this retrospective case-control study was to identify risk factors for PMM by comparing dogs with complete sensorimotor loss following IVDE that did and did not develop the disease after surgery. We also investigated whether any risk factors for PMM influenced return of ambulation. Medical records of client-owned dogs with paraplegia and loss of pain perception that underwent surgery for IVDE from 1998 to 2016, were reviewed. Dogs were categorized as PMM yes or no based on clinical progression or histopathology. Walking outcome at 6 months was established. Signalment, onset and duration of signs (categorized), steroids, non-steroidal anti-inflammatory drugs (yes or no), site of IVDE (lumbar intumescence or thoracolumbar) and longitudinal extent of IVDE were retrieved and their associations with PMM and walking outcome were examined using logistic regression. Results One hundred and ninety seven dogs were included, 45 with and 152 without PMM. A 6-month-outcome was available in 178 dogs (all 45 PMM dogs and 133 control dogs); 86 recovered walking (all in the control group). Disc extrusions at the lumbar intumescence were associated with PMM (p = 0.01, OR: 3.02, CI: 1.3–7.2). Surgery performed more than 12 h after loss of ambulation was associated with PMM (OR = 3.4; CI = 1.1–10.5, p = 0.03 for 12-24 h and OR = 4.6; CI = 1.3–16.6, p = 0.02 for the > 24 h categories when compared with the ≤12 h category). Treatment with corticosteroids was negatively associated with PMM (OR: 3.1; CI: 1.3–7.6, p = 0.01). The only variable to affect walking outcome was longitudinal extent of IVDE (OR = 2.6; CI = 1.3–5.3, p = 0.006). Conclusion Dogs with lumbar intumescence IVDE are at increased risk of PMM. Timing of surgery and corticosteroid use warrant further investigations. PMM and recovery of walking are influenced by different factors.
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- 2019
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8. Studies of xenobiotic-induced gut microbiota dysbiosis: from correlation to mechanisms
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Liang Chi, Pengcheng Tu, Hongyu Ru, and Kun Lu
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gut microbiota ,xenobiotics ,dysbiosis ,host–microbiota interactions ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Environmental chemicals can alter gut microbial community composition, known as dysbiosis. However, the gut microbiota is a highly dynamic system and its functions are still largely underexplored. Likewise, it is unclear whether xenobiotic exposure affects host health through impairing host–microbiota interactions. Answers to this question not only can lead to a more precise understanding of the toxic effects of xenobiotics but also can provide new targets for the development of new therapeutic strategies. Here, we aim to identify the major challenges in the field of microbiota-exposure research and highlight the need to exam the health effects of xenobiotic-induced gut microbiota dysbiosis in host bodies. Although the changes of gut microbiota frequently co-occur with the xenobiotic exposure, the causal relationship of xenobiotic-induced microbiota dysbiosis and diseases is rarely established. The high dynamics of the gut microbiota and the complex interactions among exposure, microbiota, and host, are the major challenges to decipher the specific health effects of microbiota dysbiosis. The next stage of study needs to combine various technologies to precisely assess the xenobiotic-induced gut microbiota perturbation and the subsequent health effects in host bodies. The exposure, gut microbiota dysbiosis, and disease outcomes have to be causally linked. Many microbiota–host interactions are established by previous studies, including signaling metabolites and response pathways in the host, which may use as start points for future research to examine the mechanistic interactions of exposure, gut microbiota, and host health. In conclusion, to precisely understand the toxicity of xenobiotics and develop microbiota-based therapies, the causal and mechanistic links of exposure and microbiota dysbiosis have to be established in the next stage study.
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- 2021
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9. International lineages of Salmonella enterica serovars isolated from chicken farms, Wakiso District, Uganda.
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Takiyah Ball, Daniel Monte, Awa Aidara-Kane, Jorge Matheu, Hongyu Ru, Siddhartha Thakur, Francis Ejobi, and Paula Fedorka-Cray
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Medicine ,Science - Abstract
The growing occurrence of multidrug-resistant (MDR) Salmonella enterica in poultry has been reported with public health concern worldwide. We reported, recently, the occurrence of Escherichia coli and Salmonella enterica serovars carrying clinically relevant resistance genes in dairy cattle farms in the Wakiso District, Uganda, highlighting an urgent need to monitor food-producing animal environments. Here, we present the prevalence, antimicrobial resistance, and sequence type of 51 Salmonella isolates recovered from 379 environmental samples from chicken farms in Uganda. Among the Salmonella isolates, 32/51 (62.7%) were resistant to at least one antimicrobial, and 10/51 (19.6%) displayed multiple drug resistance. Through PCR, five replicon plasmids were identified among chicken Salmonella isolates including IncFIIS 17/51 (33.3%), IncI1α 12/51 (23.5%), IncP 8/51 (15.7%), IncX1 8/51 (15.7%), and IncX2 1/51 (2.0%). In addition, we identified two additional replicons through WGS (Whole Genome Sequencing; ColpVC and IncFIB). A significant seasonal difference between chicken sampling periods was observed (p = 0.0017). We conclude that MDR Salmonella highlights the risks posed to animals and humans. Implementing a robust, integrated surveillance system will aid in monitoring MDR zoonotic threats.
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- 2020
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10. Characterization of the Functional Changes in Mouse Gut Microbiome Associated with Increased Akkermansia muciniphila Population Modulated by Dietary Black Raspberries
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Pengcheng Tu, Xiaoming Bian, Liang Chi, Bei Gao, Hongyu Ru, Thomas J. Knobloch, Christopher M. Weghorst, and Kun Lu
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Chemistry ,QD1-999 - Published
- 2018
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11. Profound perturbation induced by triclosan exposure in mouse gut microbiome: a less resilient microbial community with elevated antibiotic and metal resistomes
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Bei Gao, Pengcheng Tu, Xiaoming Bian, Liang Chi, Hongyu Ru, and Kun Lu
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Triclosan ,Gut microbiome ,Antibiotic resistance ,Metal resistance ,Resistome ,Triclosan resistance ,Therapeutics. Pharmacology ,RM1-950 ,Toxicology. Poisons ,RA1190-1270 - Abstract
Abstract Background Environmental chemical-induced perturbations of gut microbiome are associated with a series of adverse health outcomes. The effects of triclosan on human health have been controversial in recent years. The purpose of this study is to investigate the functional impact of triclosan on the mouse gut microbiome and the link between triclosan exposure and resistomes in gut bacteria. Methods We combined 16S rRNA gene sequencing and shotgun metagenomics sequencing to examine the compositional and functional impact of triclosan exposure on the gut microbiota of C57BL/6 mice. Results 16S rRNA sequencing results revealed that 13-week triclosan exposure in drinking water induced significant perturbations in mouse gut bacterial assemblages with distinct trajectories compared to controls. Metagenomics sequencing results indicated a remarkable enrichment of gut bacterial genes related to triclosan resistance, stress response, antibiotic resistance and heavy metal resistance. Conclusions Triclosan exposure has a profound impact on the mouse gut microbiome by inducing perturbations at both compositional and functional levels. To our best knowledge, this is the first evidence regarding the functional alterations of gut microbiome induced by triclosan exposure, which may provide novel mechanistic insights into triclosan exposure and associated diseases.
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- 2017
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12. Tissue-specific changes in size and shape of the ligaments and tendons of the porcine knee during post-natal growth.
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Stephanie G Cone, Hope E Piercy, Emily P Lambeth, Hongyu Ru, Jorge A Piedrahita, Jeffrey T Spang, Lynn A Fordham, and Matthew B Fisher
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Medicine ,Science - Abstract
Prior studies have analyzed growth of musculoskeletal tissues between species or across body segments; however, little research has assessed the differences in similar tissues within a single joint. Here we studied changes in the length and cross-sectional area of four ligaments and tendons, (anterior cruciate ligament, patellar tendon, medial collateral ligament, lateral collateral ligament) in the tibiofemoral joint of female Yorkshire pigs through high-field magnetic resonance imaging throughout growth. Tissue lengths increased by 4- to 5-fold from birth to late adolescence across the tissues while tissue cross-sectional area increased by 10-20-fold. The anterior cruciate ligament and lateral collateral ligament showed allometric growth favoring change in length over change in cross-sectional area while the patellar tendon and medial collateral ligament grow in an isometric manner. Additionally, changes in the length and cross-sectional area of the anterior cruciate ligament did not increase as much as in the other ligaments and tendon of interest. Overall, these findings suggest that musculoskeletal soft tissue morphometry can vary within tissues of similar structure and within a single joint during post-natal growth.
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- 2019
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13. Gut Microbiome Response to Sucralose and Its Potential Role in Inducing Liver Inflammation in Mice
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Xiaoming Bian, Liang Chi, Bei Gao, Pengcheng Tu, Hongyu Ru, and Kun Lu
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artificial sweetener ,sucralose ,gut microbiota ,metabolomics ,inflammation ,Physiology ,QP1-981 - Abstract
Sucralose is the most widely used artificial sweetener, and its health effects have been highly debated over the years. In particular, previous studies have shown that sucralose consumption can alter the gut microbiota. The gut microbiome plays a key role in processes related to host health, such as food digestion and fermentation, immune cell development, and enteric nervous system regulation. Inflammation is one of the most common effects associated with gut microbiome dysbiosis, which has been linked to a series of human diseases, such as diabetes and obesity. The aim of this study was to investigate the structural and functional effects of sucralose on the gut microbiota and associated inflammation in the host. In this study, C57BL/6 male mice received sucralose in their drinking water for 6 months. The difference in gut microbiota composition and metabolites between control and sucralose-treated mice was determined using 16S rRNA gene sequencing, functional gene enrichment analysis and metabolomics. Inflammatory gene expression in tissues was analyzed by RT-PCR. Alterations in bacterial genera showed that sucralose affects the gut microbiota and its developmental dynamics. Enrichment of bacterial pro-inflammatory genes and disruption in fecal metabolites suggest that 6-month sucralose consumption at the human acceptable daily intake (ADI) may increase the risk of developing tissue inflammation by disrupting the gut microbiota, which is supported by elevated pro-inflammatory gene expression in the liver of sucralose-treated mice. Our results highlight the role of sucralose-gut microbiome interaction in regulating host health-related processes, particularly chronic inflammation.
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- 2017
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14. The artificial sweetener acesulfame potassium affects the gut microbiome and body weight gain in CD-1 mice.
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Xiaoming Bian, Liang Chi, Bei Gao, Pengcheng Tu, Hongyu Ru, and Kun Lu
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Medicine ,Science - Abstract
Artificial sweeteners have been widely used in the modern diet, and their observed effects on human health have been inconsistent, with both beneficial and adverse outcomes reported. Obesity and type 2 diabetes have dramatically increased in the U.S. and other countries over the last two decades. Numerous studies have indicated an important role of the gut microbiome in body weight control and glucose metabolism and regulation. Interestingly, the artificial sweetener saccharin could alter gut microbiota and induce glucose intolerance, raising questions about the contribution of artificial sweeteners to the global epidemic of obesity and diabetes. Acesulfame-potassium (Ace-K), a FDA-approved artificial sweetener, is commonly used, but its toxicity data reported to date are considered inadequate. In particular, the functional impact of Ace-K on the gut microbiome is largely unknown. In this study, we explored the effects of Ace-K on the gut microbiome and the changes in fecal metabolic profiles using 16S rRNA sequencing and gas chromatography-mass spectrometry (GC-MS) metabolomics. We found that Ace-K consumption perturbed the gut microbiome of CD-1 mice after a 4-week treatment. The observed body weight gain, shifts in the gut bacterial community composition, enrichment of functional bacterial genes related to energy metabolism, and fecal metabolomic changes were highly gender-specific, with differential effects observed for males and females. In particular, ace-K increased body weight gain of male but not female mice. Collectively, our results may provide a novel understanding of the interaction between artificial sweeteners and the gut microbiome, as well as the potential role of this interaction in the development of obesity and the associated chronic inflammation.
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- 2017
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15. Towards Mass Spectrometry-Based Chemical Exposome: Current Approaches, Challenges, and Future Directions
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Jingchuan Xue, Yunjia Lai, Chih-Wei Liu, and Hongyu Ru
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chemical exposome ,biomonitoring ,environmental monitoring ,mass spectrometry ,disease ,bioinformatics ,Chemical technology ,TP1-1185 - Abstract
The proposal of the “exposome” concept represents a shift of the research paradigm in studying exposure-disease relationships from an isolated and partial way to a systematic and agnostic approach. Nevertheless, exposome implementation is facing a variety of challenges including measurement techniques and data analysis. Here we focus on the chemical exposome, which refers to the mixtures of chemical pollutants people are exposed to from embryo onwards. We review the current chemical exposome measurement approaches with a focus on those based on the mass spectrometry. We further explore the strategies in implementing the concept of chemical exposome and discuss the available chemical exposome studies. Early progresses in the chemical exposome research are outlined, and major challenges are highlighted. In conclusion, efforts towards chemical exposome have only uncovered the tip of the iceberg, and further advancement in measurement techniques, computational tools, high-throughput data analysis, and standardization may allow more exciting discoveries concerning the role of exposome in human health and disease.
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- 2019
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16. Serum Metabolomics Identifies Altered Bioenergetics, Signaling Cascades in Parallel with Exposome Markers in Crohn’s Disease
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Yunjia Lai, Jingchuan Xue, Chih-Wei Liu, Bei Gao, Liang Chi, Pengcheng Tu, Kun Lu, and Hongyu Ru
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Inflammatory Bowel Disease ,Crohn’s Disease ,Serum Metabolomics ,docosahexaenoic acid ,Tryptophan Metabolism ,ergothioneine ,gut microbiota ,Exposome ,Organic chemistry ,QD241-441 - Abstract
Inflammatory bowel disease (IBD) has stimulated much interest due to its surging incidences and health impacts in the U.S. and worldwide. However, the exact cause of IBD remains incompletely understood, and biomarker is lacking towards early diagnostics and effective therapy assessment. To tackle these, the emerging high-resolution mass spectrometry (HRMS)-based metabolomics shows promise. Here, we conducted a pilot untargeted LC/MS metabolomic profiling in Crohn’s disease, for which serum samples of both active and inactive cases were collected, extracted, and profiled by a state-of-the-art compound identification workflow. Results show a distinct metabolic profile of Crohn’s from control, with most metabolites downregulated. The identified compounds are structurally diverse, pointing to important pathway perturbations ranging from energy metabolism (e.g., β-oxidation of fatty acids) to signaling cascades of lipids (e.g., DHA) and amino acid (e.g., L-tryptophan). Importantly, an integral role of gut microbiota in the pathogenesis of Crohn’s disease is highlighted. Xenobiotics and their biotransformants were widely detected, calling for massive exposomic profiling for future cohort studies as such. This study endorses the analytical capacity of untargeted metabolomics for biomarker development, cohort stratification, and mechanistic interpretation; the findings might be valuable for advancing biomarker research and etiologic inquiry in IBD.
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- 2019
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17. Effects of the Artificial Sweetener Neotame on the Gut Microbiome and Fecal Metabolites in Mice
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Liang Chi, Xiaoming Bian, Bei Gao, Pengcheng Tu, Yunjia Lai, Hongyu Ru, and Kun Lu
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neotame ,gut microbiome ,metabolomics ,artificial sweeteners ,Organic chemistry ,QD241-441 - Abstract
Although artificial sweeteners are widely used in food industry, their effects on human health remain a controversy. It is known that the gut microbiota plays a key role in human metabolism and recent studies indicated that some artificial sweeteners such as saccharin could perturb gut microbiome and further affect host health, such as inducing glucose intolerance. Neotame is a relatively new low-caloric and high-intensity artificial sweetener, approved by FDA in 2002. However, the specific effects of neotame on gut bacteria are still unknown. In this study, we combined high-throughput sequencing and gas chromatography–mass spectrometry (GC-MS) metabolomics to investigate the effects of neotame on the gut microbiome and fecal metabolite profiles of CD-1 mice. We found that a four-week neotame consumption reduced the alpha-diversity and altered the beta-diversity of the gut microbiome. Firmicutes was largely decreased while Bacteroidetes was significantly increased. The Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) analysis also indicated that the control mice and neotame-treated mice have different metabolic patterns and some key genes such as butyrate synthetic genes were decreased. Moreover, neotame consumption also changed the fecal metabolite profiles. Dramatically, the concentrations of multiple fatty acids, lipids as well as cholesterol in the feces of neotame-treated mice were consistently higher than controls. Other metabolites, such as malic acid and glyceric acid, however, were largely decreased. In conclusion, our study first explored the specific effects of neotame on mouse gut microbiota and the results may improve our understanding of the interaction between gut microbiome and neotame and how this interaction could influence the normal metabolism of host bodies.
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- 2018
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18. Systematic review and meta-analysis of birth weight and perfluorohexane sulfonate exposures: examination of sample timing and study confidence.
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Hongyu Ru, Lee, Alexandra L., Rappazzo, Kristen M., Dzierlenga, Michael, Radke, Elizabeth, Bateson, Thomas F., and Wright, J. Michael
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- 2024
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19. Responses of anxious dogs to a simple behaviour modification protocol while waiting in a veterinary hospital.
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Sherman, B., primary, Joyner, J., additional, Yuschak, S., additional, Walker, K., additional, Kuhn, J., additional, Majikes, J., additional, Ru HongYu, Ru HongYu, additional, Mealin, S., additional, Brugarolas, R., additional, Roberts, D., additional, and Bozkurt, A., additional
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- 2017
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20. High-Resolution Metabolomics of 50 Neurotransmitters and Tryptophan Metabolites in Feces, Serum, and Brain Tissues Using UHPLC-ESI-Q Exactive Mass Spectrometry
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Hongyu Ru, Kun Lu, Yunjia Lai, Chih-Wei Liu, and Liang Chi
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Indole test ,Reproducibility ,Analyte ,Chromatography ,Chemistry ,General Chemical Engineering ,Tryptophan ,General Chemistry ,Tandem mass spectrometry ,Mass spectrometry ,Article ,Metabolomics ,Sample preparation ,QD1-999 - Abstract
Recent evidence indicates that tryptophan metabolites and neurotransmitters are potential mediators of the microbiome–gut–brain interaction. Here, a high-resolution ultra-high performance liquid chromatography-electrospray ionization tandem mass spectrometry (UHPLC-ESI-MS/MS) assay was developed and validated for quantifying 50 neurotransmitters, tryptophan metabolites, and bacterial indole derivatives in mouse serum, feces, and brain. The lower limit of quantitation for the 50 compounds ranged from 0.5 to 100 nmol/L, and sample preparation procedures were adapted for individual compounds to allow quantitation within linearity of the assay with a correlation coefficient >0.99. Reproducibility was tested by intra- and interday precision and accuracy of analysis: intra- and interday precision at the lower limit of quantitation was less than 20% for all compounds, with over two-thirds of the compounds achieving an interday precision below 10%, while the interday accuracy at the lower limit of quantitation ranged from 82.3 to 128.0% for all compounds. The analyte recovery was assessed based on sample-spiked stable-isotope-labeling standards, illustrating a need to consider matrix-specific recovery discrepancies when performing interorgan comparison. Carryover was evaluated by intermittent solvent blank injection. The assay was successfully applied to determining the concentration profiles of neurotransmitter and tryptophan metabolites in serum, feces, and brain of conventionally raised specific pathogen-free (SPF) C57BL/6 mice. Our method may serve as a useful analytical resource for investigating the roles of tryptophan metabolism and neurotransmitter signaling in host–microbiota interaction.
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- 2021
21. Metabolite Profiling of the Gut Microbiome in Mice with Dietary Administration of Black Raspberries
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Hongyu Ru, Jingchuan Xue, Pengcheng Tu, Bei Gao, Kun Lu, Yunjia Lai, Liang Chi, and Xiaoming Bian
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2. Zero hunger ,0303 health sciences ,biology ,General Chemical Engineering ,digestive, oral, and skin physiology ,Physiology ,General Chemistry ,Health benefits ,biology.organism_classification ,digestive system ,Article ,Gut microbiome ,Chemistry ,03 medical and health sciences ,0302 clinical medicine ,Black raspberry ,030220 oncology & carcinogenesis ,Metabolite profiling ,sense organs ,QD1-999 ,030304 developmental biology - Abstract
Mounting evidence has linked gut microbiome to health benefits of various functional foods. We previously reported that administration of a diet rich in black raspberry (BRB) changed the composition and diverse functional pathways in the mouse gut microbiome. To further characterize the functional profile in the gut microbiome of mice on BRB diet, in this follow-up study, we examined the metabolome differences in the gut microbiome driven by BRB consumption via targeted and untargeted metabolomic approaches. A distinct metabolite profile was observed in the gut microbiome of the mice on BRB diet, likely resulting from a combination of microbiome functional changes and unique precursors in BRBs. A number of functional metabolites, such as tetrahydrobiopterin and butyrate that were significantly increased in the gut microbiome may be linked to the beneficial health effects of BRB consumption. These findings suggest the important role of the gut microbiome in the health effects of BRBs and provide a connection among the health benefits of functional foods and the gut microbiome.
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- 2020
22. A Black Raspberry-Rich Diet Protects From Dextran Sulfate Sodium-Induced Intestinal Inflammation and Host Metabolic Perturbation in Association With Increased Aryl Hydrocarbon Receptor Ligands in the Gut Microbiota of Mice
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Pengcheng, Tu, Liang, Chi, Xiaoming, Bian, Bei, Gao, Hongyu, Ru, and Kun, Lu
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Nutrition and Dietetics ,Endocrinology, Diabetes and Metabolism ,Food Science - Abstract
Dietary modulation of the gut microbiota recently received considerable attention, and ligand activation of aryl hydrocarbon receptor (AHR) plays a pivotal role in intestinal immunity. Importantly, black raspberry (BRB, Rubus occidentalis) is associated with a variety of beneficial health effects. We aim to investigate effects of a BRB-rich diet on dextran sulfate sodium (DSS)-induced intestinal inflammation and to determine whether its consequent anti-inflammatory effects are relevant to modulation of the gut microbiota, especially its production of AHR ligands. A mouse model of DSS-induced intestinal inflammation was used in the present study. C57BL/6J mice were fed either AIN-76A or BRB diet. Composition and functions of the gut microbiota were assessed by 16S rRNA sequencing and comparative metagenome analysis. Metabolic profiles of host and the gut microbiome were assessed by serum and fecal metabolomic profiling and identification. BRB diet was found to ameliorate DSS-induced intestinal inflammation and host metabolic perturbation. BRB diet also protected from DSS-induced perturbation in diversity and composition in the gut microbiota. BRB diet promoted AHR ligand production by the gut microbiota, as revealed by increased levels of fecal AHR activity in addition to increased levels of two known AHR ligands, hemin and biliverdin. Accordingly, enrichment of bacterial genes and pathways responsible for production of hemin and biliverdin were found, specific gut bacteria that are highly correlated with abundances of hemin and biliverdin were also identified. BRB dietary intervention ameliorated intestinal inflammation in mice in association with promotion of AHR ligand production by the gut microbiota.
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- 2022
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23. Comparison of oral, intravenous, and subcutaneous fluid therapy for resuscitation of calves with diarrhea
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Derek M. Foster, Vincent Dore, Geof W. Smith, and Hongyu Ru
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Diarrhea ,Cattle Diseases ,Infusions, Subcutaneous ,Article ,Electrolytes ,Feces ,03 medical and health sciences ,Oral administration ,Hypovolemia ,Genetics ,medicine ,Animals ,Plasma Volume ,030304 developmental biology ,Acidosis ,Saline Solution, Hypertonic ,0303 health sciences ,osmotic diarrhea ,Dehydration ,business.industry ,Body Weight ,Osmolar Concentration ,0402 animal and dairy science ,Furosemide ,Metabolic acidosis ,subcutaneous fluid therapy ,04 agricultural and veterinary sciences ,medicine.disease ,040201 dairy & animal science ,Hypertonic saline ,Animals, Newborn ,Blood chemistry ,Anesthesia ,Fluid Therapy ,Administration, Intravenous ,Cattle ,Animal Science and Zoology ,acidosis ,medicine.symptom ,business ,oral electrolyte solution (OES) ,Food Science ,medicine.drug - Abstract
Neonatal diarrhea remains the primary cause of mortality in dairy calves around the world, and optimal treatment protocols are needed. The main goals of therapy are to restore hydration and electrolyte concentrations, correct strong ion (metabolic) acidemia, and provide nutritional support. Administration of oral electrolyte solutions (OES) has long been the primary method used to treat neonatal diarrhea in humans and calves because OES are capable of addressing each of the primary goals of therapy. In calves with moderate dehydration, we hypothesized that oral electrolytes would be as good as or better than small volumes of intravenous (IV) or subcutaneous (SC) fluids. Therefore, the main goal of this study was to compare the ability of a commercially available oral electrolyte solution (OES) administered alone or in combination with hypertonic saline with small volumes of IV or SC fluid therapy to resuscitate calves with diarrhea. Thirty-three Holstein calves from 5 to 14 d of age were utilized in this clinical trial. Diarrhea and dehydration were induced by adding sucrose to the milk replacer. In addition, hydrochlorothiazide and spironolactone were given orally and furosemide intramuscularly. Depression status, clinical hydration scores, fecal consistency, and body weight were recorded at regular intervals. Treatment began when calves had severe diarrhea and had a decrease in plasma volume of at least 10%. Calves were randomly assigned to 1 of 4 treatment groups of 8 to 9 calves per group: (1) OES; (2) OES with hypertonic saline (4 mL/kg, IV); (3) IV fluids (lactated Ringer's, 2 L); or (4) SC fluids (lactated Ringer's, 2 L). Treatments were given at 0 and 12 h. Changes in plasma volume, blood pH, electrolyte levels, and physical examination scores were determined before therapy and again at 1, 2, 4, 8, and 12 h after each treatment. All 4 treatments were ultimately successful in improving hydration as well as increasing blood pH; however, animals in both groups that received OES had much faster resuscitation than those in either the IV or SC fluid group. In conclusion, oral electrolyte products remain the gold standard for resuscitating diarrheic calves with moderate dehydration and acidemia and will likely perform better than small volumes of IV lactated Ringer's solution. Subcutaneous fluids by themselves are a poor treatment option and should be only be used as supportive therapy following the initial correction of hypovolemia and metabolic acidosis.
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- 2019
24. Neonatal Cranial Ultrasound Findings Among Infants Born Extremely Preterm: Associations With Neurodevelopmental Outcomes at Ten Years of Age
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Irina L. Mokrova, Jennifer Check, Karl C.K. Kuban, Stephen R. Hooper, Lynn A. Fordham, Elizabeth N. Allred, T. Michael O'Shea, Alan Leviton, Hongyu Ru, Rebecca C. Fry, Hudson P. Santos, Heather Campbell, Nigel Paneth, Hernan Jara, Laurie M. Douglass, Jean A. Frazier, Robert M. Joseph, and Kyle Roell
- Subjects
Male ,Pediatrics ,medicine.medical_specialty ,Critical Care ,Infant, Premature, Diseases ,Article ,Cerebral palsy ,Cohort Studies ,03 medical and health sciences ,Epilepsy ,0302 clinical medicine ,Leukoencephalopathies ,030225 pediatrics ,Medicine ,Humans ,030212 general & internal medicine ,Cognitive impairment ,Child ,Cerebral Intraventricular Hemorrhage ,business.industry ,Extremely preterm ,Age Factors ,Infant, Newborn ,medicine.disease ,Echoencephalography ,United States ,Hospitalization ,Cranial ultrasound ,Intraventricular hemorrhage ,Increased risk ,Neurodevelopmental Disorders ,Infant, Extremely Premature ,Pediatrics, Perinatology and Child Health ,Female ,business ,Birth cohort - Abstract
OBJECTIVE: To examine the association between neonatal cranial ultrasound abnormalities among infants born extremely preterm and neurodevelopmental outcomes at ten years of age. STUDY DESIGN: In a multi-center birth cohort of infants born at < 28 weeks’ gestation, 889 of 1198 survivors were evaluated for neurological, cognitive, and behavioral outcomes at 10 years of age. Sonographic markers of white matter damage (WMD) included echolucencies in the brain parenchyma and moderate to severe ventricular enlargement. Neonatal cranial ultrasound findings were classified as: intraventricular hemorrhage (IVH) without WMD, IVH with WMD, WMD without IVH, and neither IVH nor WMD. RESULTS: WMD without IVH was associated with an increased risk of cognitive impairment (OR 3.5, 95% CI 1.7, 7.4), cerebral palsy (OR 14.3, 95% CI 6.5, 31.5), and epilepsy (OR 6.9; 95% CI 2.9, 16.8). Similar associations were found for WMD accompanied by IVH. Isolated IVH was not significantly associated these outcomes. CONCLUSIONS: Among children born extremely preterm, cranial ultrasound abnormalities, particularly those indicative of WMD, are predictive of neurodevelopmental impairments at 10 years of age. The strongest associations were found with cerebral palsy.
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- 2021
25. A preoperative bupivacaine retrobulbar block offers superior antinociception compared with an intraoperative splash block in dogs undergoing enucleation
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Hongyu Ru, Ashley E. Zibura, Hans D. Westermeyer, and Lysa P. Posner
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Male ,040301 veterinary sciences ,medicine.medical_treatment ,Enucleation ,Retrobulbar block ,Eye Enucleation ,0403 veterinary science ,03 medical and health sciences ,Dogs ,0302 clinical medicine ,Double-Blind Method ,Preoperative Care ,Heart rate ,medicine ,Animals ,Dog Diseases ,Anesthetics, Local ,Saline ,Bupivacaine ,Pain, Postoperative ,Intraoperative Care ,General Veterinary ,business.industry ,Nerve Block ,04 agricultural and veterinary sciences ,Intraoperative Hemorrhage ,Blood pressure ,Isoflurane ,Anesthesia ,030221 ophthalmology & optometry ,Female ,business ,medicine.drug - Abstract
Purpose Investigate nociception differences in dogs undergoing enucleation administered bupivacaine either via preoperative retrobulbar block (pRB) or intraoperative splash block (iSB). Methods Prospective, randomized, double-masked, clinical comparison study. Dogs undergoing unilateral enucleation were randomized to two groups: one received bupivacaine pRB and saline iSB of the same volume, and the other received saline pRB and bupivacaine iSB. The following intraoperative parameters were recorded: heart rate (HR), respiratory rate (RR), end-tidal CO2 (EtCO2 ); systolic, mean, and diastolic arterial blood pressure (SAP, MAP, and DAP respectively); inspired end-tidal isoflurane concentration (EtISOIns), and expired end-tidal isoflurane concentration (EtISOExp). Pain scores were recorded pre- and postoperatively. Analgesic rescue was documented. Surgical hemorrhage and postoperative bruising and swelling were graded subjectively by the surgeon (HDW) and study coordinator (AEZ). Results A significant (P = .0399) increase from baseline in overall mean heart rate was recorded in iSB bupivacaine patients (n = 11) compared with pRB bupivacaine patients (n = 11), with no significant differences in other intraoperative physiologic parameters, or pain scores. More analgesic rescue events occurred in iSB bupivacaine patients compared to pRB bupivacaine patients. A near-significant increase in intraoperative bleeding (P = .0519), and a significant increase in bruising (P = .0382) and swelling (P = .0223) was noted in the iSB bupivacaine group. Conclusions Preoperative retrobulbar block bupivacaine is more effective than an iSB bupivacaine at controlling both intraoperative and postoperative nociception in dogs undergoing enucleation. Additionally, iSB causes more postoperative bruising and swelling and may be associated with increased intraoperative hemorrhage.
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- 2019
26. Biomechanical Function and Size of the Anteromedial and Posterolateral Bundles of the ACL Change Differently with Skeletal Growth in the Pig Model
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Stephanie G, Cone, Emily P, Lambeth, Hongyu, Ru, Lynn A, Fordham, Jorge A, Piedrahita, Jeffrey T, Spang, and Matthew B, Fisher
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Aging ,Rotation ,Tibia ,Swine ,Musculoskeletal Development ,General Medicine ,Biomechanical Phenomena ,Basic Research ,Torque ,Models, Animal ,Cadaver ,Animals ,Orthopedics and Sports Medicine ,Surgery ,Anterior Cruciate Ligament ,Range of Motion, Articular - Abstract
ACL injuries are becoming increasingly common in children and adolescents, but little is known regarding age-specific ACL function in these patients. To improve our understanding of changes in musculoskeletal tissues during growth and given the limited availability of pediatric human cadaveric specimens, tissue structure and function can be assessed in large animal models, such as the pig.Using cadaveric porcine specimens ranging throughout skeletal growth, we aimed to assess age-dependent changes in (1) joint kinematics under applied AP loads and varus-valgus moments, (2) biomechanical function of the ACL under the same loads, (3) the relative biomechanical function of the anteromedial and posterolateral bundles of the ACL; and (4) size and orientation of the anteromedial and posterolateral bundles.Stifle joints (analogous to the human knee) were collected from female Yorkshire crossbreed pigs at five ages ranging from early youth to late adolescence (1.5, 3, 4.5, 6, and 18 months; n = 6 pigs per age group, 30 total), and MRIs were performed. A robotic testing system was used to determine joint kinematics (AP tibial translation and varus-valgus rotation) and in situ forces in the ACL and its bundles in response to applied anterior tibial loads and varus-valgus moments. To see if morphological changes to the ACL compared with biomechanical changes, ACL and bundle cross-sectional area, length, and orientation were calculated from MR images.Joint kinematics decreased with increasing age. Normalized AP tibial translation decreased by 44% from 1.5 months (0.34 ± 0.08) to 18 months (0.19 ± 0.02) at 60° of flexion (p0.001) and varus-valgus rotation decreased from 25° ± 2° at 1.5 months to 6° ± 2° at 18 months (p0.001). The ACL provided the majority of the resistance to anterior tibial loading at all age groups (75% to 111% of the applied anterior force; p = 0.630 between ages). Anteromedial and posterolateral bundle function in response to anterior loading and varus torque were similar in pigs of young ages. During adolescence (4.5 to 18 months), the in situ force carried by the anteromedial bundle increased relative to that carried by the posterolateral bundle, shifting from 59% ± 22% at 4.5 months to 92% ± 12% at 18 months (data for 60° of flexion, p0.001 between 4.5 and 18 months). The cross-sectional area of the anteromedial bundle increased by 30 mm throughout growth from 1.5 months (5 ± 2 mm) through 18 months (35 ± 8 mm; p0.001 between 1.5 and 18 months), while the cross-sectional area of the posterolateral bundle increased by 12 mm from 1.5 months (7 ± 2 mm) to 4.5 months (19 ± 5 mm; p = 0.004 between 1.5 and 4.5 months), with no further growth (17 ± 7 mm at 18 months; p = 0.999 between 4.5 and 18 months). However, changes in length and orientation were similar between the bundles.We showed that the stifle joint (knee equivalent) in the pig has greater translational and rotational laxity in early youth (1.5 to 3 months) compared with adolescence (4.5 to 18 months), that the ACL functions as a primary stabilizer throughout growth, and that the relative biomechanical function and size of the anteromedial and posterolateral bundles change differently with growth.Given the large effects observed here, the age- and bundle-specific function, size, and orientation of the ACL may need to be considered regarding surgical timing, graft selection, and graft placement. In addition, the findings of this study will be used to motivate pre-clinical studies on the impact of partial and complete ACL injuries during skeletal growth.
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- 2019
27. Ultrasound-Guided Proximolateral Approach for Digital Flexor Tendon Sheath Injection in the Horse: A Cadaver Study
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Caitlyn R. Horne, Hongyu Ru, William R. Redding, and Lauren V. Schnabel
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Flexor tendon ,Effusion ,business.industry ,Cadaver ,Medicine ,Soft tissue ,Horse ,business ,Nuclear medicine ,Cadaveric spasm ,Ultrasound guided - Abstract
Objectives The aim of this study was to define a reliable ultrasound-guided proximolateral approach (PLA) for injection of the digital flexor tendon sheath (DFTS) in horses that would be as accurate as the landmark-guided basilar sesamoidean approach (BSA). Study Design Forty cadaveric limbs with no palpable effusion or DFTS abnormalities were randomly and evenly distributed between one senior (WRR) and one resident clinician (CRH) and between ultrasound-guided PLA and landmark-guided BSA groups. Limbs were injected with contrast, radiographed, and dissected. For each injection, the following was recorded: clinician, order of injection, number of attempts, if contrast was present within the DFTS, and if a structure other than the DFTS was penetrated. Results The ultrasound-guided PLA resulted in a greater number of successful injections into the DFTS than the landmark-guided BSA (19/20 vs. 16/20, respectively) with significantly fewer attempts (p = 0.03). The ultrasound-guided PLA also resulted in significantly less penetration of the surrounding soft tissue structures compared with the landmark-guided BSA (p = 0.02). Neither clinician experience nor injection number within the series was determined to have an effect on injection outcome. Conclusions The ultrasound-guided PLA to the DFTS is accurate and technically easy to perform. This approach should be considered for synoviocentesis of the DFTS, particularly in cases in which effusion is not present to reduce soft tissue trauma.
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- 2019
28. Quantitative proteomics reveals systematic dysregulations of liver protein metabolism in sucralose-treated mice
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Kun Lu, Hongyu Ru, Jingchuan Xue, Chih-Wei Liu, Liang Chi, and Pengcheng Tu
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Male ,Proteomics ,0301 basic medicine ,Sucrose ,Sucralose ,Proteome ,Metabolite ,Quantitative proteomics ,Biophysics ,Protein metabolism ,Gut flora ,Biochemistry ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,medicine ,Animals ,030102 biochemistry & molecular biology ,biology ,biology.organism_classification ,medicine.disease ,Gastrointestinal Microbiome ,Isobaric labeling ,030104 developmental biology ,Liver ,chemistry ,Dysbiosis - Abstract
Sucralose, one kind of "sugar-free" artificial sweeteners, is widely used as food and drinks additives. It is generally considered that sucralose is safe because majority of ingested sucralose is not metabolized and absorbed by human body. However, increasing evidence shows the negative effects of artificial sweeteners in perturbations of gut microbiota which plays an important role in a variety of processes related to host health such as immune system development. Specifically, sucralose uptake can alter the homeostasis of mouse gut microbiota, resulting in the significant changes of gut bacterial genera diversity, metabolic patterns, and fecal metabolite profiles as well as inducing host liver inflammation. Therefore, there is a need to study liver proteome changes which may be potentially affected by sucralose-induced dysbiosis. In this study, isobaric labeling-based quantitative proteomics was performed to reveal the liver functional proteome changes in male C57BL/6J mice with sucralose administration in drinking water for six-month period. The labeled tryptic peptides were off-line fractionated before LC-MS/MS analysis to improve proteome coverage detected. SIGNIFICANCE: We demonstrated the first quantitative proteomics for mice liver proteome to evaluate the effect of sucralose consumption. In total, >5700 protein groups were identified from 18 mouse liver tissues (9 from control group; 9 from sucralose-treated group), and 4327 protein groups were quantified in all samples without any missing values. Among them, 113 protein groups were identified with statistical significance (q value
- Published
- 2019
29. Phenotypic and Genotypic Characterization of Escherichia coli and Salmonella enterica from Dairy Cattle Farms in the Wakiso District, Uganda: A Cross-Sectional Study
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Paula J. Fedorka-Cray, David W. Lacher, Francis Ejobi, Awa Aidara-Kane, Hongyu Ru, Takiyah A Ball, Joy L. Horovitz, Daniel F Monte, Jorge Matheu-Alvarez, and Siddhartha Thakur
- Subjects
Veterinary medicine ,Farms ,040301 veterinary sciences ,Pilot Projects ,Quinolones ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,beta-Lactamases ,0403 veterinary science ,Feces ,03 medical and health sciences ,Antibiotic resistance ,Anti-Infective Agents ,Drug Resistance, Multiple, Bacterial ,Genotype ,Escherichia coli ,medicine ,Animals ,Uganda ,Escherichia coli Infections ,Dairy cattle ,Salmonella Infections, Animal ,0303 health sciences ,biology ,030306 microbiology ,Salmonella enterica ,04 agricultural and veterinary sciences ,biology.organism_classification ,Enterobacteriaceae ,Dairying ,Cross-Sectional Studies ,Cattle ,Female ,Animal Science and Zoology ,Plasmids ,Food Science - Abstract
Enterobacteriaceae producing β-lactamases have spread rapidly worldwide and pose a serious threat to human-animal-environment interface. In this study, we present the presence of Salmonella enterica (1.3%) and commensal Escherichia coli (96.3%) isolated from 400 environmental fecal dairy cattle samples over 20 farms in Uganda. Among E. coli isolates, 21% were resistant to at least one antimicrobial tested and 7% exhibited multidrug resistance. Four E. coli isolates displayed extended-spectrum beta-lactamase (ESBL)-producing genes, including bla
- Published
- 2019
30. Psychiatric Outcomes, Functioning, and Participation in Extremely Low Gestational Age Newborns at Age 15 Years
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Jean A. Frazier, David Cochran, Sohye Kim, Isha Jalnapurkar, Robert M. Joseph, Stephen R. Hooper, Hudson P. Santos, Hongyu Ru, Lauren Venuti, Rachana Singh, Lisa K. Washburn, Semsa Gogcu, Michael E. Msall, Karl C.K. Kuban, Julie V. Rollins, Shannon G. Hanson, Hernan Jara, Steven L. Pastyrnak, Kyle R. Roell, Rebecca C. Fry, and T. Michael O’Shea
- Subjects
Male ,Depressive Disorder, Major ,Academic Success ,Adolescent ,Infant, Newborn ,Infant ,Gestational Age ,Anxiety Disorders ,Article ,Diagnostic and Statistical Manual of Mental Disorders ,Psychiatry and Mental health ,Cognition ,Mental Health ,Infant, Extremely Premature ,Developmental and Educational Psychology ,Humans ,Female ,Longitudinal Studies ,Child - Abstract
OBJECTIVE: To evaluate the prevalence, co-occurrence, sex differences and functional correlates of DSM-5 psychiatric disorders in 15-year-old adolescents born extremely preterm. METHOD: The Extremely Low Gestational Age Newborns (ELGAN) Study is a longitudinal study of children born < 28 weeks gestation. At age 15, six hundred and seventy adolescents completed the Mini-International Neuropsychiatric Interview for Children and Adolescents (MINI-KID), the Youth Self Report, a disability scale of participation in social roles and cognitive testing. Parents completed a family psychiatric history questionnaire. RESULTS: The most prevalent psychiatric disorders were anxiety, attention deficit hyperactivity disorder (ADHD) and major depression. More girls met criteria for anxiety than boys. Though 66% of participants did not meet criteria for a psychiatric disorder, 15% met criteria for one, 9% for two and 8% for ≥ 3 psychiatric disorders. Those with ≥ 2 psychiatric disorders were more likely to have repeated a grade, to have an individualized educational program (IEP) and to have a lower Non-Verbal IQ than those with no psychiatric disorders. Those with any psychiatric disorder were more likely to use psychotropic medications, to have greater cognitive and functional impairment, and to have mothers who were single, on public health insurance and had less than a high school education. Finally, a positive family psychiatric history was identified more frequently among adolescents with ≥ 3 psychiatric disorders. CONCLUSION: Among adolescents born extremely preterm anxiety, major depression and ADHD were the most prevalent psychiatric disorders at age 15. Adolescents with > 1 psychiatric disorder were at increased risk for multiple functional and participatory challenges.
- Published
- 2021
31. Role of LECT2 in exacerbating atopic dermatitis: insight from in vivo and in vitro models via NF-κB signaling pathway
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Zhifang Liu, Xinyu Jiang, Keyu Zhao, Hongyu Ruan, Yizhao Ma, Yuhan Ma, Qiongyan Zhou, Jing Zhang, Xiaoyan Sun, Wenxue Ma, and Suling Xu
- Subjects
LECT2 ,atopic dermatitis ,NF-κB signaling pathway ,inflammatory cytokines ,skin barrier proteins ,therapeutic target ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Leukocyte cell-derived chemotaxin 2 (LECT2) is linked to various immune diseases. Previously, we reported that serum LECT2 levels correlate with disease severity in atopic dermatitis (AD) patients. To investigate the role of LECT2 in AD and elucidate its potential mechanisms, we used LECT2 to treat an AD mouse model induced by 1-Chloro-2,4-dinitrobenzene (DNCB) in LECT2 knockout (KO) and wild-type (WT) mice, and an AD cell model using TNF-α/IFN-γ-induced HaCaT cells. Inflammatory factors and barrier proteins were analyzed by histology, immunohistochemistry, RT-qPCR, ELISA, and Western Blot. Activation of the NF-κB signaling pathway was evaluated by Western Blot and immunofluorescence. In the AD mouse model, LECT2 treatment increased epidermal and dermal thickness, mast cell infiltration, and downregulated barrier proteins. Inflammatory factors were increased in skin lesions and serum. In the AD cell model, LECT2 decreased barrier protein levels and increased inflammatory factor levels, enhancing NF-κB P65 nuclear translocation. These results indicate that LECT2 exacerbates AD-like responses by dysregulating the NF-κB signaling pathway, highlighting its potential as a therapeutic target for AD management.
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- 2024
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32. Metabolites from midtrimester plasma of pregnant patients at high risk for preterm birth
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Angelica V. Glover, Tracy A. Manuck, Kun Lu, Julia E. Rager, Hongyu Ru, Rebecca C. Fry, and Yunjia Lai
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Pregnancy ,medicine.medical_specialty ,Obstetrics ,business.industry ,Infant, Newborn ,General Medicine ,medicine.disease ,Article ,Obstetric Labor, Premature ,Polyketides ,Pregnancy Trimester, Second ,medicine ,Gestation ,Humans ,Premature Birth ,Female ,Prospective Studies ,Prospective cohort study ,Pregnancy outcomes ,business ,Metabolic profile - Abstract
BACKGROUND: There is an increased awareness regarding the association between exposure to environmental contaminants and adverse pregnancy outcomes including preterm birth. Whether an individual’s metabolic profile can be utilized during pregnancy to differentiate the subset of patients who are ultimately destined to delivered preterm remains uncertain but could have MEANINGFUL clinical implications. OBJECTIVE: We sought to objectively quantify metabolomic profiles of patients at high risk of preterm birth by evaluating midtrimester maternal plasma and to measure whether endogenous metabolites and exogenous environmental substances differ among those who ultimately deliver preterm compared with those who deliver at term. STUDY DESIGN: This was a case-control analysis from a prospective cohort of patients carrying a singleton, nonanomalous gestation who were at high risk of spontaneous preterm birth. Subjects with a plasma blood sample drawn at
- Published
- 2021
33. High-coverage metabolomics uncovers microbiota-driven biochemical landscape of interorgan transport and gut-brain communication in mice
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Yunjia Lai, Yun-Chung Hsiao, Kun Lu, Yifei Yang, Hongyu Ru, and Chih-Wei Liu
- Subjects
Male ,Science ,General Physics and Astronomy ,Biology ,High coverage ,digestive system ,Microbiology ,General Biochemistry, Genetics and Molecular Biology ,Article ,Microbial ecosystem ,chemistry.chemical_compound ,Mice ,Metabolomics ,Aromatic amino acids ,Animals ,Feces ,Brain function ,Multidisciplinary ,Biochemical networks ,Microbiota ,Brain ,General Chemistry ,Metabolism ,Gastrointestinal Microbiome ,Mice, Inbred C57BL ,Biochemistry ,chemistry ,Indoxyl Sulfate ,Female ,Indican ,Biomarkers - Abstract
The mammalian gut harbors a complex and dynamic microbial ecosystem: the microbiota. While emerging studies support that microbiota regulates brain function with a few molecular cues suggested, the overall biochemical landscape of the “microbiota-gut-brain axis” remains largely unclear. Here we use high-coverage metabolomics to comparatively profile feces, blood sera, and cerebral cortical brain tissues of germ-free C57BL/6 mice and their age-matched conventionally raised counterparts. Results revealed for all three matrices metabolomic signatures owing to microbiota, yielding hundreds of identified metabolites including 533 altered for feces, 231 for sera, and 58 for brain with numerous significantly enriched pathways involving aromatic amino acids and neurotransmitters. Multicompartmental comparative analyses single out microbiota-derived metabolites potentially implicated in interorgan transport and the gut-brain axis, as exemplified by indoxyl sulfate and trimethylamine-N-oxide. Gender-specific characteristics of these landscapes are discussed. Our findings may be valuable for future research probing microbial influences on host metabolism and gut-brain communication., The gut microbiota harbours neuroactive potential with links to neurological disorders. Here, the authors apply global metabolomics with an integrated annotation strategy to comparatively profile fecal, blood serum and cerebral cortical brain tissues of eight-week-old germ-free mice vs. age-matched specific-pathogen-free mice, providing a snapshot of the metabolome status linked to the gut-brain axis.
- Published
- 2020
34. Gut microbiome disruption altered the biotransformation and liver toxicity of arsenic in mice
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Hongyu Ru, Liang Chi, Yunjia Lai, Kun Lu, Pengcheng Tu, and Jingchuan Xue
- Subjects
0301 basic medicine ,Sodium arsenite ,Arsenites ,Health, Toxicology and Mutagenesis ,010501 environmental sciences ,Gut flora ,Toxicology ,01 natural sciences ,Article ,Arsenic ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Biotransformation ,In vivo ,Animals ,Microbiome ,0105 earth and related environmental sciences ,biology ,Chemistry ,General Medicine ,Metabolism ,biology.organism_classification ,Sodium Compounds ,Gastrointestinal Microbiome ,Mice, Inbred C57BL ,030104 developmental biology ,Liver ,Inactivation, Metabolic ,Toxicity ,Dysbiosis ,Female ,Tumor Suppressor Protein p53 ,Xenobiotic ,Signal Transduction - Abstract
The mammalian gut microbiome (GM) plays a critical role in xenobiotic biotransformation and can profoundly affect the toxic effects of xenobiotics. Previous in vitro studies have demonstrated that gut bacteria have the capability to metabolize arsenic (As); however, the specific roles of the gut microbiota in As metabolism in vivo and the toxic effects of As are largely unknown. Here, we administered sodium arsenite to conventionally raised mice (with normal microbiomes) and GM-disrupted mice with antibiotics to investigate the role of the gut microbiota in As biotransformation and its toxicity. We found that the urinary total As levels of GM-disrupted mice were much higher, but the fecal total As levels were lower, than the levels in the conventionally raised mice. In vitro experiments, in which the GM was incubated with As, also demonstrated that the gut bacteria could adsorb or take up As and thus reduce the free As levels in the culture medium. With the disruption of the gut microbiota, arsenic biotransformation was significantly perturbed. Of note, the urinary monomethylarsonic acid (MMA)/ dimethylarsinic acid (DMA) ratio, a biomarker of arsenic metabolism and toxicity, was markedly increased. Meanwhile, the expression of genes of one-carbon metabolism, including forl2, bhmt, and mthfr, was downregulated, and the liver S-adenosylmethionine (SAM) levels were significantly decreased in the As-treated GM-disrupted mice only. Moreover, As exposure altered the expression of genes of the p53 signaling pathway, and the expression of multiple genes associated with hepatocellular carcinoma (HCC) was also changed in the As-treated GM-disrupted mice only. Collectively, disruption of the GM enhances the effect of As on one-carbon metabolism, which could in turn affect As biotransformation. GM disruption also increases the toxic effects of As and may increase the risk of As-induced HCC in mice.
- Published
- 2018
35. Characterization of the Functional Changes in Mouse Gut Microbiome Associated with Increased Akkermansia muciniphila Population Modulated by Dietary Black Raspberries
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Christopher M. Weghorst, Kun Lu, Bei Gao, Pengcheng Tu, Xiaoming Bian, Hongyu Ru, Thomas J. Knobloch, and Liang Chi
- Subjects
2. Zero hunger ,0301 basic medicine ,Genetics ,education.field_of_study ,General Chemical Engineering ,digestive, oral, and skin physiology ,030106 microbiology ,Population ,General Chemistry ,Biology ,Health benefits ,Vitamin biosynthesis ,Carbohydrate metabolism ,biology.organism_classification ,digestive system ,Gut microbiome ,lcsh:Chemistry ,03 medical and health sciences ,Human health ,030104 developmental biology ,lcsh:QD1-999 ,Gut bacteria ,education ,Akkermansia muciniphila - Abstract
Gut microbiome plays an essential role in host health through host–gut microbiota metabolic interactions. Desirable modulation of beneficial gut bacteria, such as Akkermansia muciniphila, can confer health benefits by altering microbiome-related metabolic profiles. The purpose of this study is to examine the effects of a black raspberry-rich diet to reshape the gut microbiome by selectively boosting A. muciniphila population in C57BL/6J mice. Remarkable changes of the mouse gut microbiome were revealed at both compositional and functional levels with an expected increase of A. muciniphila in concert with a profound impact on multiple gut microbiome-related functions, including vitamin biosynthesis, aromatic amino acid metabolism, carbohydrate metabolism, and oxidative stress. These functional alterations in the gut microbiome by an easily accessed freeze-dried black raspberry-supplemented diet may provide novel insights on the improvement of human health via gut microbiome modulation.
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- 2018
36. Individual susceptibility to arsenic-induced diseases: the role of host genetics, nutritional status, and the gut microbiome
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Jingchuan Xue, Kun Lu, Hongyu Ru, Chih-Wei Liu, Yunjia Lai, Pengcheng Tu, Liang Chi, and Bei Gao
- Subjects
0301 basic medicine ,Genetics ,biology ,Arsenic toxicity ,Host (biology) ,Gastrointestinal Microbiome ,Gut flora ,biology.organism_classification ,Article ,Human genetics ,Arsenic ,Gastrointestinal Tract ,03 medical and health sciences ,Nutrigenomics ,030104 developmental biology ,Toxicity ,Carcinogens ,Animals ,Humans ,Genetic Predisposition to Disease ,Gene ,Water Pollutants, Chemical - Abstract
Arsenic (As) contamination in water or food is a global issue affecting hundreds of millions of people. Although As is classified as a group 1 carcinogen and is associated with multiple diseases, the individual susceptibility to As-related diseases is highly variable, such that a proportion of people exposed to As have higher risks of developing related disorders. Many factors have been found to be associated with As susceptibility. One of the main sources of the variability found in As susceptibility is the variation in the host genome, namely, polymorphisms of many genes involved in As transportation, biotransformation, oxidative stress response and DNA repair affect the susceptibility of an individual to As toxicity and then influence the disease outcomes. In addition, lifestyles and many nutritional factors, such as folate, vitamin C, and fruit, have been found to be associated with individual susceptibility to As-related diseases. Recently, the interactions between As exposure and the gut microbiome have been of particular concern. As exposure has been shown to perturb gut microbiome composition, and the gut microbiota has been shown to also influence As metabolism, which raises the question of whether the highly diverse gut microbiota contributes to As susceptibility. Here, we review the literature and summarize the factors, such as host genetics and nutritional status, that influence As susceptibility, and we also present potential mechanisms of how the gut microbiome may influence As metabolism and its toxic effects on the host to induce variations in As susceptibility. Challenges and future directions are also discussed to emphasize the importance of characterizing the specific role of these factors in inter-individual susceptibility to As-related diseases.
- Published
- 2018
37. The organophosphate malathion disturbs gut microbiome development and the quorum-Sensing system
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Bei Gao, Liang Chi, Kun Lu, Hongyu Ru, Pengcheng Tu, Jesse Thomas, and Xiaoming Bian
- Subjects
Male ,0301 basic medicine ,Insecticides ,Population ,Biology ,Gut flora ,Toxicology ,Microbiology ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Wall ,RNA, Ribosomal, 16S ,Animals ,education ,Genetics ,education.field_of_study ,Genome ,Bacteria ,Organophosphate ,Quorum Sensing ,food and beverages ,Genomics ,General Medicine ,Environmental exposure ,biochemical phenomena, metabolism, and nutrition ,Amplicon ,biology.organism_classification ,Gastrointestinal Microbiome ,Mice, Inbred C57BL ,Quorum sensing ,030104 developmental biology ,chemistry ,Metagenomics ,Malathion ,bacteria - Abstract
The gut microbiome has tremendous potential to impact health and disease. Various environmental toxicants, including insecticides, have been shown to alter gut microbiome community structures. However, the mechanism that compositionally and functionally regulates gut microbiota remains unclear. Quorum sensing is known to modulate intra- and interspecies gene expression and coordinate population responses. It is unknown whether quorum sensing is disrupted when environmental toxicants cause perturbations in the gut microbiome community structure. To reveal the response of the quorum-sensing system to environmental exposure, we use a combination of Illumina-based 16S rRNA gene amplicon and shotgun metagenome sequencing to examine the impacts of a widely used organophosphate insecticide, malathion, on the gut microbiome trajectory, quorum sensing system and behaviors related to quorum sensing, such as motility and pathogenicity. Our results demonstrated that malathion perturbed the gut microbiome development, quorum sensing and quorum sensing related behaviors. These findings may provide a novel mechanistic understanding of the role of quorum-sensing in the gut microbiome toxicity of malathion.
- Published
- 2018
38. Detection of skin temperature differences using palpation by manual physical therapists and lay individuals
- Author
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Ron Goulet, Denis J. Marcellin-Little, J. Randy Walker, David Levine, and Hongyu Ru
- Subjects
030222 orthopedics ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Prevention ,Skin temperature ,Clinical Sciences ,Physical Therapy, Sports Therapy and Rehabilitation ,Human Movement and Sports Sciences ,Palpation ,physical therapist ,manual therapy ,03 medical and health sciences ,Orthopedics ,0302 clinical medicine ,palpation ,Clinical Research ,Physical therapy ,Medicine ,Manual therapy ,business ,Physical therapist ,Original Research Papers ,030217 neurology & neurosurgery - Abstract
OBJECTIVES: To evaluate the accuracy of detection of temperature differences among skin sites of lay individuals and manual physical therapists. METHODS: Forty-four manual physical therapists and 44 lay individuals were recruited. Subjects palpated two temperature-controlled surfaces that ranged in temperature between 30 and 35 °C and varied randomly by 1, 2, 3, 4, or 5 °C for 10 s. The subjects were then asked to identify the warmer pad. RESULTS: Accuracy increased with larger temperature differences. Accuracy of detection of 1 and 3 °C temperature differences was higher in manual physical therapists than lay individuals. DISCUSSION: Palpation can be used to accurately detecting temperature differences between sites and is more accurately performed by an experienced practitioner. LEVEL OF EVIDENCE: 3b
- Published
- 2018
39. The Effects of an Environmentally Relevant Level of Arsenic on the Gut Microbiome and Its Functional Metagenome
- Author
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Kun Lu, Bei Gao, Xiaoming Bian, Hongyu Ru, Pengcheng Tu, and Liang Chi
- Subjects
0301 basic medicine ,Time Factors ,Arsenites ,DNA repair ,chemistry.chemical_element ,Gut flora ,Carbohydrate metabolism ,Toxicology ,Ribotyping ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,medicine ,Animals ,Gene ,Fatty acid synthesis ,Arsenic ,Bacteria ,biology ,Gene Expression Regulation, Bacterial ,medicine.disease ,biology.organism_classification ,Sodium Compounds ,Gastrointestinal Microbiome ,Intestines ,Mice, Inbred C57BL ,030104 developmental biology ,chemistry ,Metagenomics ,Arsenic Effects on Gut Microbiome ,Dysbiosis ,Metagenome ,Environmental Pollutants ,Female - Abstract
Multiple environmental factors induce dysbiosis in the gut microbiome and cause a variety of human diseases. Previously, we have first demonstrated that arsenic alters the composition of the gut microbiome. However, the functional impact of arsenic on the gut microbiome has not been adequately assessed, particularly at environmentally relevant concentrations. In this study, we used 16S rRNA sequencing and metagenomics sequencing to investigate how exposure to 100 ppb arsenic for 13 weeks alters the composition and functional capacity of the gut microbiome in mice. Arsenic exposure altered the alpha and beta diversities as well as the composition profile of the gut microbiota. Metagenomics data revealed that the abundances of genes involved in carbohydrate metabolism, especially pyruvate fermentation, short-chain fatty acid synthesis, and starch utilization, and were significantly changed. Moreover, lipopolysaccharide biosynthesis genes, multiple stress response genes, and DNA repair genes were significantly increased in the gut microbiome of arsenic-exposed mice. The genes involved in the production or processing of multiple vitamins, including folic acid and vitamins B6, B12, and K2, were also enriched in arsenic-treated mice. In, addition, genes involved in multidrug resistance and conjugative transposon proteins were highly increased after treatment with arsenic. In conclusion, we demonstrate that arsenic exposure, at an environmentally relevant dose, not only perturbed the communal composition of the gut microbiome but also profoundly altered a variety of important bacterial functional pathways.
- Published
- 2017
40. Lipid and Cholesterol Homeostasis after Arsenic Exposure and Antibiotic Treatment in Mice: Potential Role of the Microbiota
- Author
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Yunjia Lai, Liang Chi, Kun Lu, Hongyu Ru, Chih-Wei Liu, Pengcheng Tu, and Jingchuan Xue
- Subjects
inorganic chemicals ,medicine.drug_class ,Health, Toxicology and Mutagenesis ,Antibiotics ,chemistry.chemical_element ,010501 environmental sciences ,Gut flora ,Retinoid X receptor ,Pharmacology ,digestive system ,01 natural sciences ,Arsenic ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Homeostasis ,030212 general & internal medicine ,Liver X receptor ,Cholesterol homeostasis ,ARSENIC EXPOSURE ,0105 earth and related environmental sciences ,integumentary system ,biology ,Arsenic toxicity ,Chemistry ,Research ,Public Health, Environmental and Occupational Health ,Lipid Metabolism ,biology.organism_classification ,Anti-Bacterial Agents ,Gastrointestinal Microbiome ,3. Good health ,Cholesterol ,lipids (amino acids, peptides, and proteins) - Abstract
Background: Arsenic-induced liver X receptor/retinoid X receptor (LXR/RXR) signaling inhibition is a potential mechanism underlying the cardiovascular effects caused by arsenic. The gut microbiota can influence arsenic toxic effects. Objective: We aimed to explore whether gut microbiota play a role in arsenic-induced LXR/RXR signaling inhibition and the subsequent lipid and cholesterol dysbiosis. Methods: Conventional and antibiotic-treated mice (AB-treated mice) were exposed to 0.25 ppm and 1 ppm arsenic for 2 wk. Hepatic mRNAs were extracted and sequenced. The expression levels of genes associated with LXR/RXR signaling were quantified by quantitative real-time polymerase chain reaction (qPCR), and serum and hepatic cholesterol levels were measured. Liquid chromatography–mass spectrometry (LC-MS)–based lipidomics were used to examine serum and hepatic lipids. Results: Pathway analysis indicated that arsenic exposure differentially influenced the hepatic signaling pathways in conventional and AB-treated mice. The expression of sterol regulatory element-binding protein 1 (Srebp1c), 3-hydroxy-3-methylglutaryl-CoA reductase (Hmgcr), and cytochrome P450 family 7 subfamily A member 1 (Cyp7a1), as well as cholesterol efflux genes, including ATP binding cassette subfamily G member 5/8 (Abcg5/8) and cluster of differentiation 36 (Cd36), was lower in arsenic-exposed conventional mice but not in AB-treated mice. Similarly, under arsenic exposure, the hepatic expression of scavenger receptor class B member 1 (Scarb1), which is involved in reverse cholesterol transport (RCT), was lower in conventional mice, but was higher in AB-treated animals compared with controls. Correspondingly, arsenic exposure exerted opposite effects on the serum cholesterol levels in conventional and AB-treated mice, i.e., higher serum cholesterol levels in conventional mice but lower levels in AB-treated mice than in respective controls. Serum lipid levels, especially triglyceride (TG) levels, were higher in conventional mice exposed to 1 ppm arsenic, while arsenic exposure did not significantly affect the serum lipids in AB-treated mice. Liver lipid patterns were also differentially perturbed in a microbiota-dependent manner. Conclusions: Our results suggest that in mice, the gut microbiota may be a critical factor regulating arsenic-induced LXR/RXR signaling perturbation, suggesting that modulation of the gut microbiota might be an intervention strategy to reduce the toxic effects of arsenic on lipid and cholesterol homeostasis. https://doi.org/10.1289/EHP4415
- Published
- 2019
41. Association between anesthesia duration and outcome in dogs with surgically treated acute severe spinal cord injury caused by thoracolumbar intervertebral disk herniation
- Author
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Franz J. Soebbeler, Sarah A. Moore, Hongyu Ru, Nick D. Jeffery, Christopher L. Mariani, Karen R. Muñana, Natasha J. Olby, Peter J Early, Joe Fenn, Andrea Tipold, and Adriano Wang-Leandro
- Subjects
Male ,040301 veterinary sciences ,Operative Time ,Pain ,canine ,Intervertebral Disc Degeneration ,Walking ,Standard Article ,030204 cardiovascular system & hematology ,0403 veterinary science ,Cohort Studies ,surgery ,03 medical and health sciences ,0302 clinical medicine ,Dogs ,Interquartile range ,medicine ,Animals ,hemilaminectomy ,Anesthesia ,Dog Diseases ,Spinal cord injury ,Spinal Cord Injuries ,Retrospective Studies ,Paraplegia ,lcsh:Veterinary medicine ,General Veterinary ,business.industry ,Medical record ,Laminectomy ,Retrospective cohort study ,04 agricultural and veterinary sciences ,medicine.disease ,Standard Articles ,Intervertebral disk ,Treatment Outcome ,extrusion ,Neurology ,Ambulatory ,lcsh:SF600-1100 ,Female ,SMALL ANIMAL ,prognosis ,business ,Myelomalacia ,Intervertebral Disc Displacement - Abstract
Background Retrospective research recently identified a possible relationship between duration of surgery and outcome in severely affected dogs treated surgically for acute thoracolumbar intervertebral disk herniation (TL-IVDH). Hypothesis That increased duration of surgery is associated with poorer outcome in dogs with absent pain perception treated surgically for TL-IVDH. Animals Two hundred ninety-seven paraplegic dogs with absent pain perception surgically treated for acute TL-IVDH. Methods Retrospective cohort study. Medical records of 5 institutions were reviewed. Inclusion criteria were paraplegia with absence of pain perception, surgical treatment of TL-IVDH, and 1-year postoperative outcome (ambulatory: yes or no). Canine data, outcome, and surgery and total anesthesia duration were retrieved. Results In this study, 183/297 (61.6%) dogs were ambulatory within 1 year, 114 (38.4%) dogs failed to recover, including 74 dogs (24.9%) euthanized because of progressive myelomalacia. Median anesthesia duration in dogs that regained ambulation within 1 year of surgery (4.0 hours, interquartile range [IQR] 3.2-5.1) was significantly shorter than those that did not (4.5 hours, IQR 3.7-5.6, P = .01). Multivariable logistic regression demonstrated a significant negative association between both duration of surgery and total anesthesia time and ambulation at 1 year when controlling for body weight and number of disk spaces operated on. Conclusions and clinical importance Findings support a negative association between increased duration of anesthesia and outcome in this group of dogs. However, the retrospective nature of the data does not imply a causal relationship.
- Published
- 2019
42. International lineages of Salmonella enterica serovars isolated from chicken farms, Wakiso District, Uganda
- Author
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Hongyu Ru, Takiyah Ball, Awa Aidara-Kane, Paula J. Fedorka-Cray, Jorge Matheu, Daniel F Monte, Francis Ejobi, and Siddhartha Thakur
- Subjects
0301 basic medicine ,Serotype ,Bacterial Diseases ,Veterinary medicine ,Salmonella ,Drug resistance ,medicine.disease_cause ,Pathology and Laboratory Medicine ,Tanzania ,Poultry ,Geographical Locations ,Drug Resistance, Multiple, Bacterial ,Prevalence ,Medicine and Health Sciences ,Uganda ,Gamefowl ,Immunologic Surveillance ,Multidisciplinary ,biology ,Salmonella enterica ,Eukaryota ,Agriculture ,Poultry farming ,Antimicrobial ,Anti-Bacterial Agents ,Bacterial Pathogens ,Infectious Diseases ,Medical Microbiology ,Salmonella Infections ,Vertebrates ,Salmonella Typhimurium ,Medicine ,Livestock ,Seasons ,Pathogens ,Plasmids ,Research Article ,Farms ,Science ,030106 microbiology ,Microbiology ,Birds ,03 medical and health sciences ,Antibiotic resistance ,Enterobacteriaceae ,Microbial Control ,medicine ,Animals ,Humans ,Microbial Pathogens ,Poultry Diseases ,Pharmacology ,Whole Genome Sequencing ,Bacteria ,business.industry ,Organisms ,Biology and Life Sciences ,biology.organism_classification ,Multiple drug resistance ,030104 developmental biology ,Genes, Bacterial ,Fowl ,Antibiotic Resistance ,Amniotes ,People and Places ,Africa ,Replicon ,Antimicrobial Resistance ,business ,Chickens - Abstract
The growing occurrence of multidrug-resistant (MDR) Salmonella enterica in poultry has been reported with public health concern worldwide. We reported, recently, the occurrence of Escherichia coli and Salmonella enterica serovars carrying clinically relevant resistance genes in dairy cattle farms in the Wakiso District, Uganda, highlighting an urgent need to monitor food-producing animal environments. Here, we present the prevalence, antimicrobial resistance, and sequence type of 51 Salmonella isolates recovered from 400 environmental samples from chicken farms in Uganda. Among the Salmonella isolates, 32/51 (62.7%) were resistant to at least one antimicrobial, and 10/51 (19.6%) displayed multiple drug resistance. Through PCR, five replicon plasmids were identified among all chicken Salmonella including IncFIIS 17/51 (33.3%), IncI1α 12/51 (23.5%), IncP 8/51 (15.7%), IncX1 8/51 (15.7%), and IncX2 1/51 (2.0%). In addition, we identified replicons through WGS (ColpVC and IncFIB). A significant seasonal difference between chicken sampling periods was observed (p= 0.0017). We conclude that MDR Salmonella highlights the risks posed to the animals, environment, and humans for infection. Implementing a robust integrated surveillance system in Uganda will help monitor MDR to help control infectious threats.
- Published
- 2019
43. Chronic Arsenic Exposure Induces Oxidative Stress and Perturbs Serum Lysolipids and Fecal Unsaturated Fatty Acid Metabolism
- Author
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Kun Lu, Pengcheng Tu, Hongyu Ru, Yunjia Lai, Chih-Wei Liu, Liang Chi, and Jingchuan Xue
- Subjects
medicine.medical_specialty ,Urinary system ,Administration, Oral ,Toxicology ,medicine.disease_cause ,Arsenic ,chemistry.chemical_compound ,Feces ,Mice ,Metabolomics ,Internal medicine ,medicine ,Deoxyguanosine ,Animals ,chemistry.chemical_classification ,Arsenic toxicity ,General Medicine ,Lipids ,Amino acid ,Mice, Inbred C57BL ,Oxidative Stress ,Endocrinology ,chemistry ,Fatty Acids, Unsaturated ,Female ,Oxidative stress ,Polyunsaturated fatty acid - Abstract
Chronic arsenic exposure from drinking water is a global public health issue, which is associated with numerous human diseases and influences millions of people worldwide. The effects of arsenic exposure to the metabolic networks remain elusive. Here, we exposed female C57BL/6J mice to 1 ppm inorganic arsenic in drinking water for 3 months to investigate how arsenic exposure perturbs serum and fecal metabolic profiles. We found decreased levels of serum compounds with antioxidative activities in arsenic-treated mice, in accordance with elevated oxidative stress indicated by higher urinary 8-oxo-2'-deoxyguanosine (8-oxo-dG) levels. Moreover, the levels of multiple lysophosphatidylcholines (lysoPCs) were significantly increased in the sera of arsenic-exposed mice, including lysoPC (O-18:0), lysoPC (20:3), lysoPC (18:1), and lysoPC (22:6). Arsenic exposure perturbed the levels of several key polyunsaturated fatty acids (PUFAs) in the fecal samples in concert with alterations in related microbial pathways. Additionally, changes in the abundances of many functional metabolites, together with decreased levels of amino acids, were found in the fecal samples of arsenic-treated mice. By delineating the impact of arsenic exposure on the metabolic profiles, the findings may provide new biomarkers and mechanistic insights into arsenic-associated diseases.
- Published
- 2019
44. Serum Metabolomics Reveals That Gut Microbiome Perturbation Mediates Metabolic Disruption Induced by Arsenic Exposure in Mice
- Author
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Jiapeng Leng, Liang Chi, Pengcheng Tu, Jingchuan Xue, Hongyu Ru, Yunjia Lai, Kun Lu, and Chih-Wei Liu
- Subjects
0301 basic medicine ,Serum ,Metabolite ,Physiology ,chemistry.chemical_element ,Biology ,Biochemistry ,Mass Spectrometry ,Arsenic ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Metabolomics ,Metabolic Diseases ,Diabetes mellitus ,medicine ,Animals ,Carcinogen ,030102 biochemistry & molecular biology ,Fatty acid metabolism ,General Chemistry ,Bacterial Infections ,medicine.disease ,Sphingolipid ,Gastrointestinal Microbiome ,Arsenic contamination of groundwater ,030104 developmental biology ,chemistry ,Metabolome - Abstract
Arsenic contamination in drinking water has been a worldwide health concern for decades. In addition to being a well-recognized carcinogen, arsenic exposure has also been linked to diabetes, neurological effects, and cardiovascular diseases. Recently, increasing evidence has indicated that gut microbiome is an important risk factor in modulating the development of diseases. We aim to investigate the role of gut microbiome perturbation in arsenic-induced diseases by coupling a mass-spectrometry-based metabolomics approach and an animal model with altered gut microbiome induced by bacterial infection. Serum metabolic profiling has revealed that gut microbiome perturbation and arsenic exposure induced the dramatic changes of numerous metabolite pathways, including fatty acid metabolism, phospholipids, sphingolipids, cholesterols, and tryptophan metabolism, which were not or were less disrupted when the gut microbiome stayed normal. In summary, this study suggests that gut microbiome perturbation can exacerbate or cause metabolic disorders induced by arsenic exposure.
- Published
- 2019
45. MOESM1 of Risk factors associated with progressive myelomalacia in dogs with complete sensorimotor loss following intervertebral disc extrusion: a retrospective case-control study
- Author
-
Castel, Aude, Olby, Natasha, Hongyu Ru, Mariani, Christopher, MuñAna, Karen, and Early, Peter
- Abstract
Additional file 1.Table of data analyzed in this study. Details of all risk factors for each dog are provided.
- Published
- 2019
- Full Text
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46. Tissue-specific changes in size and shape of the ligaments and tendons of the porcine knee during post-natal growth
- Author
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Lynn A. Fordham, Jeffrey T Spang, Hongyu Ru, Matthew B. Fisher, Emily P. Lambeth, Stephanie G. Cone, Hope E. Piercy, and Jorge A. Piedrahita
- Subjects
Knee Joint ,Swine ,Isometric exercise ,Diagnostic Radiology ,Tendons ,0302 clinical medicine ,Skeletal Joints ,Pig Models ,Medicine and Health Sciences ,Anterior Cruciate Ligament ,Musculoskeletal System ,030222 orthopedics ,0303 health sciences ,Medial collateral ligament ,Multidisciplinary ,medicine.diagnostic_test ,Radiology and Imaging ,Anatomy ,Animal Models ,musculoskeletal system ,Magnetic Resonance Imaging ,Tendon ,medicine.anatomical_structure ,Experimental Organism Systems ,Connective Tissue ,Organ Specificity ,Ligament ,Medicine ,Female ,Research Article ,musculoskeletal diseases ,Imaging Techniques ,Anterior cruciate ligament ,Science ,Biology ,Research and Analysis Methods ,03 medical and health sciences ,Diagnostic Medicine ,Patellar Ligament ,medicine ,Tissue specific ,Animals ,030304 developmental biology ,Ligaments ,Morphometry ,Biology and Life Sciences ,Magnetic resonance imaging ,030229 sport sciences ,Patellar tendon ,Biological Tissue ,Age Groups ,Body Limbs ,People and Places ,Animal Studies ,Population Groupings ,human activities - Abstract
Prior studies have analyzed growth of musculoskeletal tissues between species or across body segments; however, little research has assessed the differences in similar tissues within a single joint. Here we studied changes in the length and cross-sectional area of four ligaments and tendons, (anterior cruciate ligament, patellar tendon, medial collateral ligament, lateral collateral ligament) in the tibiofemoral joint of female Yorkshire pigs through high-field magnetic resonance imaging throughout growth. Tissue lengths increased by 4-to 5-fold from birth to late adolescence across the tissues while tissue cross-sectional area increased by 10-20-fold. The anterior cruciate ligament and lateral collateral ligament showed allometric growth favoring change in length over change in cross-sectional area while the patellar tendon and medial collateral ligament grow in an isometric manner. Additionally, changes in the length and cross-sectional area of the anterior cruciate ligament did not increase as much as in the other ligaments and tendon of interest. Overall, these findings suggest that musculoskeletal soft tissue morphometry can vary within tissues of similar structure and within a single joint during post-natal growth.
- Published
- 2019
47. Isobaric Labeling Quantitative Metaproteomics for the Study of Gut Microbiome Response to Arsenic
- Author
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Liang Chi, Chih-Wei Liu, Jingchuan Xue, Kun Lu, Hongyu Ru, and Pengcheng Tu
- Subjects
0301 basic medicine ,Proteomics ,030102 biochemistry & molecular biology ,Proteome ,General Chemistry ,Computational biology ,Biology ,Tandem mass tag ,Biochemistry ,Gut microbiome ,Arsenic ,Gastrointestinal Microbiome ,03 medical and health sciences ,Isobaric labeling ,Feces ,030104 developmental biology ,Metagenomics ,RNA, Ribosomal, 16S ,Metaproteomics ,Humans ,Microbiome - Abstract
Quantitative metaproteomics is a relatively new research field that applies proteomics techniques to study microbial proteins of the microbiome and holds great potential in truly quantifying the functional proteins actually expressed by microbes in the biological environment, such as the gastrointestinal tract. The significant association between arsenic exposure and gut microbiome perturbations has been reported; however, metaproteomics has not yet been applied to study arsenic-induced proteome changes of the microbiome. Most importantly, to our knowledge, isobaric-labeling-based large-scale metaproteomics has not been reported using the advanced database-search approaches such as MetaPro-IQ and matched metagenome database-search strategies to provide high quantification accuracy and fewer missing quantification values. In the present study, a new experimental workflow coupled to isobaric labeling and MetaPro-IQ was demonstrated for the metaproteomics study of arsenic-induced gut microbiome perturbations. The advantages of this workflow were also discussed. For all 18 fecal samples analyzed, 7611 protein groups were quantified without any missing values. The consistent results of expression profiles were observed between 16S rRNA gene sequencing and metaproteomics. This isobaric-labeling-based workflow demonstrated the significant improvement of quantitative metaproteomics for gut microbiome study.
- Published
- 2018
48. Three-dimensional assessment of the influence of juvenile pubic symphysiodesis on the pelvic geometry of dogs
- Author
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Bethany L. Walters, Anna E. Dunlap, Hongyu Ru, Denis J. Marcellin-Little, Kent A. Bruner, and Kyle G. Mathews
- Subjects
Male ,040301 veterinary sciences ,Arthrodesis ,Geometry ,Osteoarthritis ,Pelvis ,0403 veterinary science ,03 medical and health sciences ,0302 clinical medicine ,Juvenile pubic symphysiodesis ,Dogs ,Computer software ,medicine ,Animals ,Humans ,Hip Dysplasia, Canine ,Range of Motion, Articular ,Hip dysplasia ,030222 orthopedics ,General Veterinary ,business.industry ,Pubic Symphysis ,04 agricultural and veterinary sciences ,General Medicine ,medicine.disease ,body regions ,Dysplasia ,Female ,Hip Joint ,business ,Tomography, X-Ray Computed - Abstract
OBJECTIVE To evaluate the 3-D geometry of canine pelves and to characterize the long-term effects of juvenile pubic symphysiodesis (JPS) on pelvic geometry by comparing the pelvic configuration between littermates that did and did not undergo the procedure. ANIMALS 24 Labrador Retriever, Golden Retriever, or Labrador Retriever–Golden Retriever crossbred service dogs from 13 litters. PROCEDURES At 16 weeks old, puppies with a hip joint distraction index ≥ 0.5 were randomly assigned to undergo thermal JPS (n = 9), mechanical JPS (7), or a sham (control) surgical procedure (8). Ten years later, each dog underwent a CT scan of the pelvic region. Modeling software was used to create 3-D reconstructions from the CT scans, and various pelvic measurements were made and compared among the 3 treatments. RESULTS Compared with the control treatment, thermal and mechanical JPS increased the hemipelvis acetabular angle by 4°, the acetabular angle of lateral opening by 5°, and the orientation of the medial acetabular wall in a transverse plane by 6°, which indicated that JPS increased dorsal femoral head coverage by the acetabulum. Both JPS procedures decreased the pelvic canal area by approximately 20% and acetabular inclination by 6° but did not alter acetabular retroversion. CONCLUSIONS AND CLINICAL RELEVANCE Results indicated that thermal and mechanical JPS were equally effective in altering the 3-D pelvic geometry of dogs. These findings may help guide future studies of alternatives for optimizing canine pelvic anatomy to minimize the risk of hip dysplasia and associated osteoarthritis.
- Published
- 2018
49. Diagnostic utility of clinical and laboratory test parameters for differentiating between sudden acquired retinal degeneration syndrome and pituitary-dependent hyperadrenocorticism in dogs
- Author
-
Freya M. Mowat, Chaowen Zheng, Melanie L. Foster, Katharine F. Lunn, Annie Oh, Hongyu Ru, and Jonathan G. Williams
- Subjects
Male ,medicine.medical_specialty ,Future studies ,General Veterinary ,Ophthalmic examination ,Urine specific gravity ,business.industry ,Retinal Degeneration ,Routine laboratory ,Retina ,Laboratory test ,Dogs ,Ophthalmology ,Case-Control Studies ,medicine ,Electroretinography ,Biomarker (medicine) ,Animals ,Clinical significance ,Sudden acquired retinal degeneration ,Female ,Dog Diseases ,business ,Pituitary ACTH Hypersecretion ,Tomography, Optical Coherence - Abstract
To identify discriminating factors, using clinical ophthalmic examination findings and routine laboratory testing, that differentiate dogs with early sudden acquired retinal degeneration (SARDS; vision loss6 weeks' duration), age- and breed-matched control dogs, and dogs with pituitary-dependent hyperadrenocorticism (PDH).Client-owned dogs: 15 with SARDS with6 weeks duration of vision loss, 14 age- and breed-matched control dogs, and 13 dogs with confirmed PDH.Dogs underwent ophthalmic examination, electroretinography (ERG) fundus photography, and spectral-domain optical coherence tomography (SD-OCT) in addition to physical examination, urinalysis, serum biochemistry, complete blood count, and adrenocorticotrophic hormone (ACTH) stimulation testing. Statistical analysis was performed using receiver operating curve area under the curve analysis, principal component analysis with sparse partial least squares analysis, and one-way ANOVA.Dogs with SARDS all had absent vision and ERG a- and b-waves. SD-OCT demonstrated that dogs with SARDS had significantly thicker inner retina, thinner outer nuclear layer, and thicker photoreceptor inner/outer segment measurements than either controls or dogs with PDH. Discriminating laboratory parameters between dogs with SARDS and PDH with high specificity included post-ACTH serum cortisol (19.3 μg/dL), AST:ALT ratio (0.343), and urine specific gravity (1.030).We have identified significant discriminators between SARDS and PDH. This work provides the basis for future studies that could identify and examine dogs with SARDS prior to vision loss, which may extend the potential therapeutic window for SARDS.
- Published
- 2018
50. Pet Dogs with Subclinical Acute Radiodermatitis Experience Widespread Somatosensory Sensitization
- Author
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Krista L. Kelsey, Hongyu Ru, B. Duncan X. Lascelles, Masataka Enomoto, Tracy L. Gieger, and Michael W. Nolan
- Subjects
Oncology ,medicine.medical_specialty ,medicine.medical_treatment ,Analgesic ,Biophysics ,Somatosensory system ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Dogs ,0302 clinical medicine ,Internal medicine ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Dog Diseases ,Sensitization ,Subclinical infection ,Radiation ,business.industry ,Soft tissue ,Radiotherapy Dosage ,Sarcoma ,Pets ,Radiation therapy ,medicine.anatomical_structure ,Sensory Thresholds ,030220 oncology & carcinogenesis ,Acute Disease ,Toxicity ,Radiodermatitis ,Complication ,business - Abstract
Radiation-induced dermatitis (RID) is a common and painful complication of radiotherapy. When severe, radiation-associated pain (RAP) can reduce the efficacy of radiotherapy by limiting the radiation dose given, and/or necessitating breaks in treatment. Current RAP mitigation strategies are of limited efficacy. Our long-term goal is to develop a comparative oncology model, in which novel analgesic interventions for RAP can be evaluated. The aim of this study was to validate quantitative end points indicative of RAP in pet dogs with subclinical and low-grade RID. Extremity soft tissue sarcomas were treated with post-operative irradiation (54 Gy in 18 fractions). Visual toxicity scores, questionnaire-based pain instruments and objective algometry [mechanical quantitative sensory testing (mQST)], were evaluated regularly. Breed-matched control populations were also evaluated to address the effect of potential confounders. Skin biopsies from within the irradiated field were collected at baseline and after 24 Gy irradiation, for analysis of pain-related genes using the nanoString nCounter platform. Relative to control populations, mechanical thresholds decreased in irradiated test subjects as the total radiation dose increased, with the most pronounced effect at the irradiated site. This was accompanied by increased mRNA expression of GFRα3, TNFα, TRPV2 and TRPV4. In a separate set of dogs with moderate-to-severe RID, serum concentrations of artemin (the ligand for GFRα3) were elevated relative to controls (P = 0.015). Progressive reduction in mechanical thresholds, both locally and remotely, indicates widespread somatosensory sensitization during radiation treatment. mQST in pet dogs undergoing radiation treatment represents an innovative tool for preclinical evaluation of novel analgesics.
- Published
- 2019
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