37 results on '"Horvat F"'
Search Results
2. Small Energy Prosumer Revenue Diversification with ASIC hardware
- Author
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Zupan, L., primary, Ostheimer, I., additional, Horvat, F., additional, and Vukobratovic, M., additional
- Published
- 2022
- Full Text
- View/download PDF
3. Quelques observations cytologiques et polliniques de Vigna pilosa (Willd.) Baker (Papilionaceae)
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Vanderborght, T., Stainier, F., Horvat, F., and Tondeur, R.
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- 1991
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4. Design of abdominal retractor
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Cambal, M., primary, Hucko, B., additional, Zemanova, M., additional, Cekan, M., additional, Horvat, F., additional, Chlebo, O., additional, Bachraty, M., additional, Hrbaty, B., additional, and Labas, P., additional
- Published
- 2020
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5. ÉTUDE EN MICROSCOPIE ÉLECTRONIQUE DU POLYMORPHISME POLLINIQUE ET DES FILAMENTS DE VISCINE CHEZ FUCHSIA CV «RICCARTONIA»
- Author
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HORVAT, F.
- Published
- 1989
6. Strain induced response of AlGaN/GaN high electron mobility transistor located on cantilever and membrane
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Dzuba, J., primary, Vanko, G., additional, Babchenko, O., additional, Lalinsky, T., additional, Horvat, F., additional, Szarvas, M., additional, Kovac, T., additional, and Hucko, B., additional
- Published
- 2016
- Full Text
- View/download PDF
7. Unusual cytological patterns in microsporogenesis in a cultivar of Fuchsia: 1. Multiple spindle
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Tilquin, J. P., de Brouwer, K., and Horvat, F.
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- 1984
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8. Comparative Experimental and Numerical Analysis of Flow and Pressure Fields Inside Deep and Shallow Pockets for a Hydrostatic Bearing
- Author
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Horvat, F. E., primary and Braun, M. J., additional
- Published
- 2011
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9. The classroom and other platforms: Teaching methods at the turning point of Hungarian language and literature instruction
- Author
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Horvat Futo Hargita and Hoža Eva
- Subjects
hungarian language and literature instruction ,paradigm shift in teaching theory and teaching methods ,classroom observation and teaching practice ,department of hungarian studies workshop ,distance learning ,Theory and practice of education ,LB5-3640 - Abstract
The study presented in this paper looks at current issues concerning the teaching of Hungarian literature and language and its attendant dilemmas and problems from the aspect of the practical needs of final year undergraduate students and master's students at the Department of Hungarian Studies in Novi Sad, and also considers the significance of these issues for the methods of Hungarian language and literature instruction. The Department has been educating Hungarian language teachers for sixty years. In that time, including the past twenty years that we have been teaching teaching methods at the Department, a paradigm shift has occurred in the teaching of literature, and a new era of literature studies has also reshaped the methods of literature instruction. A similar paradigm shift has occurred in language teaching. Thus, for instance, the so-called new Hungarian grammar has introduced significant changes to the teaching of syntax, while at the same time theoretical teaching of pragmatics, semantics, rhetoric and textual studies has been foregrounded. Moreover, there have been changes stemming from contemporary didactic ideas, the implementation of ICT, and the changing role of the teacher. The study focuses on the work of teaching specialists to date and on the activities of the workshop at the Department of Hungarian Studies in Novi Sad and the discursive challenges of teaching a minority first language. It also examines the extent to which students have received training in didactics and teaching methods during the current pandemic, without the possibility of observation and teaching practice in schools.
- Published
- 2020
10. Relation entre l'ultrastructure pollinique et la taxonomie de quatre espèces du genre Mucuna (Leguminosae—Papilionoideae)
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Horvat, F., primary, Ferguson, I.K., additional, and Stainier, F., additional
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- 1992
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11. Study of the gametophyte of fuchsia cv
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Horvat, F., primary
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- 1990
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12. The Effects of Piezoelectricity Matrix Constants on the Charge of a Thin Membrane
- Author
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Kováč Tomáš, Horvát František, Hučko Branislav, Jančo Roland, and Musil Miloš
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piezoelectric ,gallium nitride ,constitutive equations ,average ,variance ,deviation ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
This article is devoted to the comparison of the influence of the piezoelectric matrix properties on the magnitude of the resulting charge when a thin piezoelectric membrane of circular cross section, made from aluminium gallium nitride (Al-GaN), is loaded. The size of change of the electric charge was determined by the numerical analysis and the by the change of the properties of the piezoelectric matrix. The matrix constants were obtained from various sources introduced in world databases.
- Published
- 2017
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13. Force Analysis of Bench Press on Stable and Unstable Base
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Hučko Branislav, Čekan Michal, and Horvát František
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bench-press ,accelerometry ,impulse ,performance ,training ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The contribution reviews current technologies for the measurement of performance in athletes during stationary exercise and validates the technology utilizing accelerometry. The behaviours of force during the bench press exercise on a stable and unstable base are reviewed and the results are presented. It was found that, training on an unstable base can be exploited by athletes to maximize their performance.
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- 2016
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14. Chrysanthemum Virescence, a Disorder of Unknown Etiology.
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Verhoyen, M., Genot, Monique, Colin, J., and Horvat, F.
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- 1979
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15. Inclusions in Mesophyll Cells induced by a Virus causing Chlorotic Streaks on Leaves of Allium porrum L.
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Horvat, F. and Verhoyen, M.
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- 1975
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16. Use of attrition studies to predict Western coal degradation
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Horvat, F
- Published
- 1984
17. Enhanced RNAi does not provide efficient innate antiviral immunity in mice.
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Kulmann MIR, Taborska E, Benköova B, Palus M, Drobek A, Horvat F, Pasulka J, Malik R, Salyova E, Hönig V, Pellerova M, Borsanyiova M, Nedvedova L, Stepanek O, Bopegamage S, Ruzek D, and Svoboda P
- Subjects
- Animals, Mice, Mice, Inbred C57BL, Lymphocytic choriomeningitis virus immunology, Lymphocytic choriomeningitis virus genetics, Encephalomyocarditis virus genetics, Encephalomyocarditis virus immunology, DEAD-box RNA Helicases genetics, DEAD-box RNA Helicases metabolism, RNA, Small Interfering genetics, Encephalitis Viruses, Tick-Borne genetics, Encephalitis Viruses, Tick-Borne immunology, Ribonuclease III genetics, Ribonuclease III metabolism, Immunity, Innate genetics, RNA Interference
- Abstract
In RNA interference (RNAi), long double-stranded RNA is cleaved by the Dicer endonuclease into small interfering RNAs (siRNAs), which guide degradation of complementary RNAs. While RNAi mediates antiviral innate immunity in plants and many invertebrates, vertebrates have adopted a sequence-independent response and their Dicer produces siRNAs inefficiently because it is adapted to process small hairpin microRNA precursors in the gene-regulating microRNA pathway. Mammalian endogenous RNAi is thus a rudimentary pathway of unclear significance. To investigate its antiviral potential, we modified the mouse Dicer locus to express a truncated variant (DicerΔHEL1) known to stimulate RNAi and we analyzed how DicerΔHEL1/wt mice respond to four RNA viruses: coxsackievirus B3 and encephalomyocarditis virus from Picornaviridae; tick-borne encephalitis virus from Flaviviridae; and lymphocytic choriomeningitis virus (LCMV) from Arenaviridae. Increased Dicer activity in DicerΔHEL1/wt mice did not elicit any antiviral effect, supporting an insignificant antiviral function of endogenous mammalian RNAi in vivo. However, we also observed that sufficiently high expression of DicerΔHEL1 suppressed LCMV in embryonic stem cells and in a transgenic mouse model. Altogether, mice with increased Dicer activity offer a new benchmark for identifying and studying viruses susceptible to mammalian RNAi in vivo., (© The Author(s) 2025. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2025
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18. A comparative roadmap of PIWI-interacting RNAs across seven species reveals insights into de novo piRNA-precursor formation in mammals.
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Konstantinidou P, Loubalova Z, Ahrend F, Friman A, Almeida MV, Poulet A, Horvat F, Wang Y, Losert W, Lorenzi H, Svoboda P, Miska EA, van Wolfswinkel JC, and Haase AD
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- Animals, Humans, Mice, Species Specificity, DNA Transposable Elements genetics, Dogs, Piwi-Interacting RNA, RNA, Small Interfering metabolism, RNA, Small Interfering genetics, Mammals genetics
- Abstract
PIWI-interacting RNAs (piRNAs) play a crucial role in safeguarding genome integrity by silencing mobile genetic elements. From flies to humans, piRNAs originate from long single-stranded precursors encoded by genomic piRNA clusters. How piRNA clusters form to adapt to genomic invaders and evolve to maintain protection remain key outstanding questions. Here, we generate a roadmap of piRNA clusters across seven species that highlights both similarities and variations. In mammals, we identify transcriptional readthrough as a mechanism to generate piRNAs from transposon insertions (piCs) downstream of genes (DoG). Together with the well-known stress-dependent DoG transcripts, our findings suggest a molecular mechanism for the formation of piRNA clusters in response to retroviral invasion. Finally, we identify a class of dynamic piRNA clusters in humans, underscoring unique features of human germ cell biology. Our results advance the understanding of conserved principles and species-specific variations in piRNA biology and provide tools for future studies., Competing Interests: Declaration of interests The authors declare no competing interests., (Published by Elsevier Inc.)
- Published
- 2024
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19. Cytosolic nucleic acid sensors and interferon beta-1 activation drive radiation-induced anti-tumour immune effects in human pancreatic cancer cells.
- Author
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Kerschbaum-Gruber S, Kleinwächter A, Popova K, Kneringer A, Appel LM, Stasny K, Röhrer A, Dias AB, Benedum J, Walch L, Postl A, Barna S, Kratzer B, Pickl WF, Akalin A, Horvat F, Franke V, Widder J, Georg D, and Slade D
- Subjects
- Humans, Cell Line, Tumor, Nucleotidyltransferases metabolism, Nucleotidyltransferases genetics, Membrane Proteins metabolism, Membrane Proteins genetics, Adaptor Proteins, Signal Transducing, Interferon-beta metabolism, Pancreatic Neoplasms immunology, Pancreatic Neoplasms radiotherapy, Carcinoma, Pancreatic Ductal immunology, Carcinoma, Pancreatic Ductal radiotherapy, Carcinoma, Pancreatic Ductal therapy, Cytosol metabolism, Signal Transduction
- Abstract
Introduction: Pancreatic ductal adenocarcinoma (PDAC) remains a leading cause of cancer-related deaths worldwide with limited treatment options due to extensive radiation and chemotherapy resistance. Monotherapy with immune checkpoint blockade showed no survival benefit. A combination of immunomodulation and radiotherapy may offer new treatment strategies, as demonstrated for non-small cell lung cancer. Radiation-induced anti-tumour immunity is mediated through cytosolic nucleic acid sensing pathways that drive the expression of interferon beta-1 (IFNB1) and proinflammatory cytokines., Methods: Human PDAC cell lines (PANC-1, MIA PaCa-2, BxPC-3) were treated with X-rays and protons. Immunogenic cell death was measured based on HMGB1 release. Cytosolic dsDNA and dsRNA were analysed by immunofluorescence microscopy. Cell cycle progression, MHC-I and PD-L1 expression were determined by flow cytometry. Galectin-1 and IFNB1 were measured by ELISA. The expression levels and the phosphorylation status of the cGAS/STING and RIG-I/MAVS signalling pathways were analysed by western blotting, the expression of IFNB1 and proinflammatory cytokines was determined by RT-qPCR and genome-wide by RNA-seq. CRISPR-Cas9 knock-outs and inhibitors were used to elucidate the relevance of STING, MAVS and NF-κB for radiation-induced IFNB1 activation., Results: We demonstrate that a clinically relevant X-ray hypofractionation regimen (3x8 Gy) induces immunogenic cell death and activates IFNB1 and proinflammatory cytokines. Fractionated radiation induces G2/M arrest and accumulation of cytosolic DNA in PDAC cells, which partly originates from mitochondria. RNA-seq analysis shows a global upregulation of type I interferon response and NF-κB signalling in PDAC cells following 3x8 Gy. Radiation-induced immunogenic response is regulated by STING, MAVS and NF-κB. In addition to immunostimulation, radiation also induces immunosuppressive galectin-1. No significant changes in MHC-I or PD-L1 expression were observed. Moreover, PDAC cell lines show similar radiation-induced immune effects when exposed to single-dose protons or photons., Conclusion: Our findings provide a rationale for combinatorial radiation-immunomodulatory treatment approaches in PDAC using conventional photon-based or proton beam radiotherapy., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Kerschbaum-Gruber, Kleinwächter, Popova, Kneringer, Appel, Stasny, Röhrer, Dias, Benedum, Walch, Postl, Barna, Kratzer, Pickl, Akalin, Horvat, Franke, Widder, Georg and Slade.)
- Published
- 2024
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20. Functional canonical RNAi in mice expressing a truncated Dicer isoform and long dsRNA.
- Author
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Buccheri V, Pasulka J, Malik R, Loubalova Z, Taborska E, Horvat F, Roos Kulmann MI, Jenickova I, Prochazka J, Sedlacek R, and Svoboda P
- Subjects
- Animals, Mice, DEAD-box RNA Helicases genetics, DEAD-box RNA Helicases metabolism, MicroRNAs genetics, MicroRNAs metabolism, Female, Protein Isoforms genetics, Protein Isoforms metabolism, Ribonuclease III genetics, Ribonuclease III metabolism, RNA, Double-Stranded metabolism, RNA, Double-Stranded genetics, RNA Interference, RNA, Small Interfering genetics, RNA, Small Interfering metabolism
- Abstract
Canonical RNA interference (RNAi) is sequence-specific mRNA degradation guided by small interfering RNAs (siRNAs) made by RNase III Dicer from long double-stranded RNA (dsRNA). RNAi roles include gene regulation, antiviral immunity or defense against transposable elements. In mammals, RNAi is constrained by Dicer's adaptation to produce another small RNA class-microRNAs. However, a truncated Dicer isoform (ΔHEL1) supporting RNAi exists in mouse oocytes. A homozygous mutation to express only the truncated ΔHEL1 variant causes dysregulation of microRNAs and perinatal lethality in mice. Here, we report the phenotype and canonical RNAi activity in Dicer
ΔHEL1/wt mice, which are viable, show minimal miRNome changes, but their endogenous siRNA levels are an order of magnitude higher. We show that siRNA production in vivo is limited by available dsRNA, but not by Protein kinase R, a dsRNA sensor of innate immunity. dsRNA expression from a transgene yields sufficient siRNA levels to induce efficient RNAi in heart and muscle. DicerΔHEL1/wt mice with enhanced canonical RNAi offer a platform for examining potential and limits of mammalian RNAi in vivo., (© 2024. The Author(s).)- Published
- 2024
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21. The translational oscillation in oocyte and early embryo development.
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Iyyappan R, Aleshkina D, Ming H, Dvoran M, Kakavand K, Jansova D, Del Llano E, Gahurova L, Bruce AW, Masek T, Pospisek M, Horvat F, Kubelka M, Jiang Z, and Susor A
- Subjects
- Gene Expression Regulation, Developmental, Meiosis, RNA, Messenger genetics, RNA, Messenger metabolism, Animals, Mice, Embryonic Development, Oocytes cytology, Oocytes growth & development, Oocytes metabolism, Protein Biosynthesis
- Abstract
Translation is critical for development as transcription in the oocyte and early embryo is silenced. To illustrate the translational changes during meiosis and consecutive two mitoses of the oocyte and early embryo, we performed a genome-wide translatome analysis. Acquired data showed significant and uniform activation of key translational initiation and elongation axes specific to M-phases. Although global protein synthesis decreases in M-phases, translation initiation and elongation activity increases in a uniformly fluctuating manner, leading to qualitative changes in translation regulation via the mTOR1/4F/eEF2 axis. Overall, we have uncovered a highly dynamic and oscillatory pattern of translational reprogramming that contributes to the translational regulation of specific mRNAs with different modes of polysomal occupancy/translation that are important for oocyte and embryo developmental competence. Our results provide new insights into the regulation of gene expression during oocyte meiosis as well as the first two embryonic mitoses and show how temporal translation can be optimized. This study is the first step towards a comprehensive analysis of the molecular mechanisms that not only control translation during early development, but also regulate translation-related networks employed in the oocyte-to-embryo transition and embryonic genome activation., (© The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2023
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22. De novo emergence, existence, and demise of a protein-coding gene in murids.
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Petrzilek J, Pasulka J, Malik R, Horvat F, Kataruka S, Fulka H, and Svoboda P
- Subjects
- Animals, Muridae, RNA, Long Noncoding genetics
- Abstract
Background: Genes, principal units of genetic information, vary in complexity and evolutionary history. Less-complex genes (e.g., long non-coding RNA (lncRNA) expressing genes) readily emerge de novo from non-genic sequences and have high evolutionary turnover. Genesis of a gene may be facilitated by adoption of functional genic sequences from retrotransposon insertions. However, protein-coding sequences in extant genomes rarely lack any connection to an ancestral protein-coding sequence., Results: We describe remarkable evolution of the murine gene D6Ertd527e and its orthologs in the rodent Muroidea superfamily. The D6Ertd527e emerged in a common ancestor of mice and hamsters most likely as a lncRNA-expressing gene. A major contributing factor was a long terminal repeat (LTR) retrotransposon insertion carrying an oocyte-specific promoter and a 5' terminal exon of the gene. The gene survived as an oocyte-specific lncRNA in several extant rodents while in some others the gene or its expression were lost. In the ancestral lineage of Mus musculus, the gene acquired protein-coding capacity where the bulk of the coding sequence formed through CAG (AGC) trinucleotide repeat expansion and duplications. These events generated a cytoplasmic serine-rich maternal protein. Knock-out of D6Ertd527e in mice has a small but detectable effect on fertility and the maternal transcriptome., Conclusions: While this evolving gene is not showing a clear function in laboratory mice, its documented evolutionary history in Muroidea during the last ~ 40 million years provides a textbook example of how a several common mutation events can support de novo gene formation, evolution of protein-coding capacity, as well as gene's demise., (© 2022. The Author(s).)
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- 2022
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23. Structural and functional basis of mammalian microRNA biogenesis by Dicer.
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Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, and Svoboda P
- Subjects
- Mice, Animals, RNA Interference, Carrier Proteins metabolism, Mammals metabolism, Ribonuclease III metabolism, MicroRNAs genetics, MicroRNAs metabolism
- Abstract
MicroRNA (miRNA) and RNA interference (RNAi) pathways rely on small RNAs produced by Dicer endonucleases. Mammalian Dicer primarily supports the essential gene-regulating miRNA pathway, but how it is specifically adapted to miRNA biogenesis is unknown. We show that the adaptation entails a unique structural role of Dicer's DExD/H helicase domain. Although mice tolerate loss of its putative ATPase function, the complete absence of the domain is lethal because it assures high-fidelity miRNA biogenesis. Structures of murine Dicer•-miRNA precursor complexes revealed that the DExD/H domain has a helicase-unrelated structural function. It locks Dicer in a closed state, which facilitates miRNA precursor selection. Transition to a cleavage-competent open state is stimulated by Dicer-binding protein TARBP2. Absence of the DExD/H domain or its mutations unlocks the closed state, reduces substrate selectivity, and activates RNAi. Thus, the DExD/H domain structurally contributes to mammalian miRNA biogenesis and underlies mechanistical partitioning of miRNA and RNAi pathways., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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24. Physiologically relevant miRNAs in mammalian oocytes are rare and highly abundant.
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Kataruka S, Kinterova V, Horvat F, Kulmann MIR, Kanka J, and Svoboda P
- Subjects
- Animals, Cattle, Oocytes metabolism, Oogenesis genetics, RNA, Messenger genetics, RNA, Messenger metabolism, Swine, Zygote metabolism, MicroRNAs genetics, MicroRNAs metabolism
- Abstract
miRNAs, ~22nt small RNAs associated with Argonaute (AGO) proteins, are important negative regulators of gene expression in mammalian cells. However, mammalian maternal miRNAs show negligible repressive activity and the miRNA pathway is dispensable for oocytes and maternal-to-zygotic transition. The stoichiometric hypothesis proposed that this is caused by dilution of maternal miRNAs during oocyte growth. As the dilution affects miRNAs but not mRNAs, it creates unfavorable miRNA:mRNA stoichiometry for efficient repression of cognate mRNAs. Here, we report that porcine ssc-miR-205 and bovine bta-miR-10b are exceptional miRNAs, which resist the diluting effect of oocyte growth and can efficiently suppress gene expression. Additional analysis of ssc-miR-205 shows that it has higher stability, reduces expression of endogenous targets, and contributes to the porcine oocyte-to-embryo transition. Consistent with the stoichiometric hypothesis, our results show that the endogenous miRNA pathway in mammalian oocytes is intact and that maternal miRNAs can efficiently suppress gene expression when a favorable miRNA:mRNA stoichiometry is established., (© 2021 The Authors. Published under the terms of the CC BY NC ND 4.0 license.)
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- 2022
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25. Formation of spermatogonia and fertile oocytes in golden hamsters requires piRNAs.
- Author
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Loubalova Z, Fulka H, Horvat F, Pasulka J, Malik R, Hirose M, Ogura A, and Svoboda P
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- Animals, Cricetinae, Gene Silencing physiology, Male, Mesocricetus metabolism, Oocytes pathology, RNA Helicases genetics, Retroelements physiology, Spermatogenesis genetics, Spermatogonia metabolism, Testis metabolism, Oocytes metabolism, RNA, Small Interfering genetics, Spermatogenesis physiology, Spermatogonia pathology
- Abstract
PIWI-interacting RNAs (piRNAs) support the germline by suppressing retrotransposons. Studies of the pathway in mice have strongly shaped the view that mammalian piRNAs are essential for male but not for female fertility. Here, we report that the role of the piRNA pathway substantially differs in golden hamsters (Mesocricetus auratus), the piRNA pathway setup of which more closely resembles that of other mammals, including humans. The loss of the Mov10l1 RNA helicase-an essential piRNA biogenesis factor-leads to striking phenotypes in both sexes. In contrast to mice, female Mov10l1
-/- hamsters are sterile because their oocytes do not sustain zygotic development. Furthermore, Mov10l1-/- male hamsters have impaired establishment of spermatogonia accompanied by transcriptome dysregulation and an expression surge of a young retrotransposon subfamily. Our results show that the mammalian piRNA pathway has essential roles in both sexes and its adaptive nature allows it to manage emerging genomic threats and acquire new critical roles in the germline., (© 2021. The Author(s).)- Published
- 2021
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26. MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes.
- Author
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Kataruka S, Modrak M, Kinterova V, Malik R, Zeitler DM, Horvat F, Kanka J, Meister G, and Svoboda P
- Subjects
- 3T3 Cells, Animals, Cattle, Cells, Cultured, Cricetinae, Female, Gene Expression Regulation, Developmental, Mice, Mice, Inbred C57BL, MicroRNAs metabolism, Models, Theoretical, Oocytes cytology, RNA, Messenger genetics, RNA, Messenger metabolism, Rats, Species Specificity, Swine, MicroRNAs genetics, Oocytes metabolism, Oogenesis
- Abstract
MicroRNAs (miRNAs) are ubiquitous small RNAs guiding post-transcriptional gene repression in countless biological processes. However, the miRNA pathway in mouse oocytes appears inactive and dispensable for development. We propose that marginalization of the miRNA pathway activity stems from the constraints and adaptations of RNA metabolism elicited by the diluting effects of oocyte growth. We report that miRNAs do not accumulate like mRNAs during the oocyte growth because miRNA turnover has not adapted to it. The most abundant miRNAs total tens of thousands of molecules in growing (∅ 40 μm) and fully grown (∅ 80 μm) oocytes, a number similar to that observed in much smaller fibroblasts. The lack of miRNA accumulation results in a 100-fold lower miRNA concentration in fully grown oocytes than in somatic cells. This brings a knock-down-like effect, where diluted miRNAs engage targets but are not abundant enough for significant repression. Low-miRNA concentrations were observed in rat, hamster, porcine and bovine oocytes, arguing that miRNA inactivity is not mouse-specific but a common mammalian oocyte feature. Injection of 250,000 miRNA molecules was sufficient to restore reporter repression in mouse and porcine oocytes, suggesting that miRNA inactivity comes from low-miRNA abundance and not from some suppressor of the pathway., (© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2020
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27. The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution.
- Author
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Ganesh S, Horvat F, Drutovic D, Efenberkova M, Pinkas D, Jindrova A, Pasulka J, Iyyappan R, Malik R, Susor A, Vlahovicek K, Solc P, and Svoboda P
- Subjects
- Animals, Gene Knockout Techniques, Mice, Mitochondria ultrastructure, Oocytes growth & development, Oocytes ultrastructure, Polyadenylation genetics, Rats, Transcriptome genetics, Mitochondria genetics, Oocytes metabolism, RNA, Long Noncoding genetics, RNA, Messenger genetics, RNA, Mitochondrial genetics
- Abstract
Tens of thousands of rapidly evolving long non-coding RNA (lncRNA) genes have been identified, but functions were assigned to relatively few of them. The lncRNA contribution to the mouse oocyte physiology remains unknown. We report the evolutionary history and functional analysis of Sirena1, the most expressed lncRNA and the 10th most abundant poly(A) transcript in mouse oocytes. Sirena1 appeared in the common ancestor of mouse and rat and became engaged in two different post-transcriptional regulations. First, antisense oriented Elob pseudogene insertion into Sirena1 exon 1 is a source of small RNAs targeting Elob mRNA via RNA interference. Second, Sirena1 evolved functional cytoplasmic polyadenylation elements, an unexpected feature borrowed from translation control of specific maternal mRNAs. Sirena1 knock-out does not affect fertility, but causes minor dysregulation of the maternal transcriptome. This includes increased levels of Elob and mitochondrial mRNAs. Mitochondria in Sirena1-/- oocytes disperse from the perinuclear compartment, but do not change in number or ultrastructure. Taken together, Sirena1 contributes to RNA interference and mitochondrial aggregation in mouse oocytes. Sirena1 exemplifies how lncRNAs stochastically engage or even repurpose molecular mechanisms during evolution. Simultaneously, Sirena1 expression levels and unique functional features contrast with the lack of functional importance assessed under laboratory conditions., (© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2020
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28. Design of abdominal retractor.
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Cambal M, Hucko B, Zemanova M, Cekan M, Horvat F, Chlebo O, Bachraty M, Hrbaty B, and Labas P
- Subjects
- Equipment Design, Abdomen, Surgical Instruments
- Abstract
Introduction: The purpose of this paper is to present the development and design of an abdominal retractor which allows a single person to perform operations and the fixation of the operation instruments can be done with one hand. The additional devices make the operation more comfortable for surgeons., Methods: Conventional measuring devices have been designed and applied for determining axial forces in a surgeon's forearm during operations. The same forces must be transmitted by the frame of the retractor. Thus a simple truss structure of a retractor was done. Several types of fixations have been proposed and tested using the rapid prototyping. Finally, the abdominal retractor was manufactured from stainless steel., Results: The simple-to-use abdominal retractor was built. The standard surgery instruments were modified due to the fixation system of the frame. A wide variety of additional useful devices, such as a lamp, video camera etc., were also proposed., Conclusion: The present abdominal retractor is user-friendly and all components are easily sterilized by conventional methods (Fig. 7, Ref. 6) Keywords: abdominal retractor, stainless steel retractor, standard surger, fixation system of the frame, lamp, video camera, conventional methods.
- Published
- 2020
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29. Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes.
- Author
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Taborska E, Pasulka J, Malik R, Horvat F, Jenickova I, Jelić Matošević Z, and Svoboda P
- Subjects
- Animals, Argonaute Proteins genetics, DEAD-box RNA Helicases genetics, Female, Mice, Mutation, Oocytes chemistry, Ribonuclease III genetics, Signal Transduction, Oocytes growth & development, RNA Interference, RNA, Small Interfering genetics, Retroelements
- Abstract
Germline genome defense evolves to recognize and suppress retrotransposons. One of defensive mechanisms is the PIWI-associated RNA (piRNA) pathway, which employs small RNAs for sequence-specific repression. The loss of the piRNA pathway in mice causes male sterility while females remain fertile. Unlike spermatogenic cells, mouse oocytes posses also RNA interference (RNAi), another small RNA pathway capable of retrotransposon suppression. To examine whether RNAi compensates the loss of the piRNA pathway, we produced a new RNAi pathway mutant DicerSOM and crossed it with a catalytically-dead mutant of Mili, an essential piRNA gene. Normal follicular and oocyte development in double mutants showed that RNAi does not suppress a strong ovarian piRNA knock-out phenotype. However, we observed redundant and non-redundant targeting of specific retrotransposon families illustrating stochasticity of recognition and targeting of invading retrotransposons. Intracisternal A Particle retrotransposon was mainly targeted by the piRNA pathway, MaLR and RLTR10 retrotransposons were targeted mainly by RNAi. Double mutants showed accumulations of LINE-1 retrotransposon transcripts. However, we did not find strong evidence for transcriptional activation and mobilization of retrotransposition competent LINE-1 elements suggesting that while both defense pathways are simultaneously expendable for ovarian oocyte development, yet another transcriptional silencing mechanism prevents mobilization of LINE-1 elements., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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30. Main constraints for RNAi induced by expressed long dsRNA in mouse cells.
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Demeter T, Vaskovicova M, Malik R, Horvat F, Pasulka J, Svobodova E, Flemr M, and Svoboda P
- Subjects
- Animals, Base Sequence genetics, Carrier Proteins metabolism, DEAD-box RNA Helicases metabolism, Gene Knockout Techniques, Mice, MicroRNAs metabolism, NIH 3T3 Cells, Plasmids genetics, RNA, Small Interfering metabolism, RNA-Binding Proteins metabolism, Ribonuclease III metabolism, Transfection, eIF-2 Kinase genetics, RNA Interference physiology, RNA, Double-Stranded genetics, RNA, Double-Stranded metabolism
- Abstract
RNAi is the sequence-specific mRNA degradation guided by siRNAs produced from long dsRNA by RNase Dicer. Proteins executing RNAi are present in mammalian cells but rather sustain the microRNA pathway. Aiming for a systematic analysis of mammalian RNAi, we report here that the main bottleneck for RNAi efficiency is the production of functional siRNAs, which integrates Dicer activity, dsRNA structure, and siRNA targeting efficiency. Unexpectedly, increased expression of Dicer cofactors TARBP2 or PACT reduces RNAi but not microRNA function. Elimination of protein kinase R, a key dsRNA sensor in the interferon response, had minimal positive effects on RNAi activity in fibroblasts. Without high Dicer activity, RNAi can still occur when the initial Dicer cleavage of the substrate yields an efficient siRNA. Efficient mammalian RNAi may use substrates with some features of microRNA precursors, merging both pathways even more than previously suggested. Although optimized endogenous Dicer substrates mimicking miRNA features could evolve for endogenous regulations, the same principles would make antiviral RNAi inefficient as viruses would adapt to avoid efficacy., (© 2019 Demeter et al.)
- Published
- 2019
- Full Text
- View/download PDF
31. Role of Cnot6l in maternal mRNA turnover.
- Author
-
Horvat F, Fulka H, Jankele R, Malik R, Jun M, Solcova K, Sedlacek R, Vlahovicek K, Schultz RM, and Svoboda P
- Abstract
Removal of poly(A) tail is an important mechanism controlling eukaryotic mRNA turnover. The major eukaryotic deadenylase complex CCR4-NOT contains two deadenylase components, CCR4 and CAF1, for which mammalian CCR4 is encoded by Cnot6 or Cnot6l paralogs. We show that Cnot6l apparently supplies the majority of CCR4 in the maternal CCR4-NOT in mouse, hamster, and bovine oocytes. Deletion of Cnot6l yielded viable mice, but Cnot6l
-/- females exhibited ∼40% smaller litter size. The main onset of the phenotype was post-zygotic: fertilized Cnot6l-/- eggs developed slower and arrested more frequently than Cnot6l+/- eggs, suggesting that maternal CNOT6L is necessary for accurate oocyte-to-embryo transition. Transcriptome analysis revealed major transcriptome changes in Cnot6l-/- ovulated eggs and one-cell zygotes. In contrast, minimal transcriptome changes in preovulatory Cnot6l-/- oocytes were consistent with reported Cnot6l mRNA dormancy. A minimal overlap between transcripts sensitive to decapping inhibition and Cnot6l loss suggests that decapping and CNOT6L-mediated deadenylation selectively target distinct subsets of mRNAs during oocyte-to-embryo transition in mouse., Competing Interests: The authors declare that they have no conflict of interest.- Published
- 2018
- Full Text
- View/download PDF
32. Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes.
- Author
-
Franke V, Ganesh S, Karlic R, Malik R, Pasulka J, Horvat F, Kuzman M, Fulka H, Cernohorska M, Urbanova J, Svobodova E, Ma J, Suzuki Y, Aoki F, Schultz RM, Vlahovicek K, and Svoboda P
- Subjects
- Animals, Cattle, Cricetinae, Endogenous Retroviruses, Humans, Mice, Oocytes cytology, Promoter Regions, Genetic, Transcription, Genetic, Zygote cytology, Evolution, Molecular, Gene Expression Regulation, Oocytes metabolism, Retroelements, Terminal Repeat Sequences, Zygote metabolism
- Abstract
Retrotransposons are "copy-and-paste" insertional mutagens that substantially contribute to mammalian genome content. Retrotransposons often carry long terminal repeats (LTRs) for retrovirus-like reverse transcription and integration into the genome. We report an extraordinary impact of a group of LTRs from the mammalian endogenous retrovirus-related ERVL retrotransposon class on gene expression in the germline and beyond. In mouse, we identified more than 800 LTRs from ORR1, MT, MT2, and MLT families, which resemble mobile gene-remodeling platforms that supply promoters and first exons. The LTR-mediated gene remodeling also extends to hamster, human, and bovine oocytes. The LTRs function in a stage-specific manner during the oocyte-to-embryo transition by activating transcription, altering protein-coding sequences, producing noncoding RNAs, and even supporting evolution of new protein-coding genes. These functions result, for example, in recycling processed pseudogenes into mRNAs or lncRNAs with regulatory roles. The functional potential of the studied LTRs is even higher, because we show that dormant LTR promoter activity can rescue loss of an essential upstream promoter. We also report a novel protein-coding gene evolution- D6Ertd527e -in which an MT LTR provided a promoter and the 5' exon with a functional start codon while the bulk of the protein-coding sequence evolved through a CAG repeat expansion. Altogether, ERVL LTRs provide molecular mechanisms for stochastically scanning, rewiring, and recycling genetic information on an extraordinary scale. ERVL LTRs thus offer means for a comprehensive survey of the genome's expression potential, tightly intertwining with gene expression and evolution in the germline., (© 2017 Franke et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2017
- Full Text
- View/download PDF
33. Fluorescence and electron microscope studies on the interaction between lysosomes of mammalian host-cells and Toxoplasma gondii RH following treatment with cotrimoxazole [proceedings].
- Author
-
Nguyen BT, Stadtsbaeder S, and Horvat F
- Subjects
- Animals, Drug Combinations, Lysosomes drug effects, Time Factors, Toxoplasmosis drug therapy, Sulfamethoxazole pharmacology, Toxoplasma drug effects, Trimethoprim pharmacology
- Published
- 1978
34. [Macrophages infected with Toxoplasma gondii RH. In vitro effect of cotrimoxazole on the interaction between mitochondria and parasitophoric vacuoles].
- Author
-
Nguyen BT, Stadtsbaeder S, and Horvat F
- Subjects
- Animals, Mice, Mitochondria drug effects, Vacuoles drug effects, Macrophages parasitology, Sulfamethoxazole pharmacology, Toxoplasma drug effects, Trimethoprim pharmacology
- Published
- 1979
35. [TREATMENT OF ATROPHIC RHINITIS WITH RESERPINE AND IRON].
- Author
-
HORVAT F and PROKOP V
- Subjects
- Humans, Atrophy, Connective Tissue Diseases, Drug Therapy, Iron, Reserpine, Rhinitis, Rhinitis, Atrophic, Skin Diseases
- Published
- 1965
36. [Stellate ganglion block in otorhinolaryngology with reference to tinnitus aurium].
- Author
-
JABLONICKY S and HORVAT F
- Subjects
- Humans, Anesthesia, Local, Injections, Otolaryngology, Stellate Ganglion, Tinnitus therapy
- Published
- 1951
37. [Cases of keartosis palmaris et plantaris of the Papillon-Lefèvre type].
- Author
-
Cajkovac V and Horvat F
- Subjects
- Adolescent, Adult, Humans, Male, Foot Dermatoses genetics, Hand Dermatoses genetics, Keratosis genetics, Periodontal Diseases genetics
- Published
- 1970
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