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3. Obesity-associated microbiomes instigate visceral adipose tissue inflammation by recruitment of distinct neutrophils

Author

Shantaram, Dharti, Hoyd, Rebecca, Blaszczak, Alecia M., Antwi, Linda, Jalilvand, Anahita, Wright, Valerie P., Liu, Joey, Smith, Alan J., Bradley, David, Lafuse, William, Liu, YunZhou, Williams, Nyelia F., Snyder, Owen, Wheeler, Caroline, Needleman, Bradley, Brethauer, Stacy, Noria, Sabrena, Renton, David, Perry, Kyle A., Nagareddy, Prabha, Wozniak, Daniel, Mahajan, Sahil, Rana, Pranav S. J. B., Pietrzak, Maciej, Schlesinger, Larry S., Spakowicz, Daniel J., and Hsueh, Willa A.

Published
2024
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4. The FITNESS study: longitudinal geriatric assessment, treatment toxicity, and biospecimen collection to assess functional disability among older adults with lung cancer

Author

Grogan, Madison, primary, Hoyd, Rebecca, additional, Benedict, Jason, additional, Janse, Sarah, additional, Williams, Nyelia, additional, Naughton, Michelle, additional, Burd, Christin E., additional, Paskett, Electra D., additional, Rosko, Ashley, additional, Spakowicz, Daniel J., additional, and Presley, Carolyn J., additional

Published
2024
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5. Comparative analysis of the tumor microbiome, molecular profiles, and immune cell abundances by HPV status in mucosal head and neck cancers and their impact on survival

Author

Upadhyay, Rituraj, primary, Dhakal, Aastha, additional, Wheeler, Caroline, additional, Hoyd, Rebecca, additional, Jagjit Singh, Malvenderjit, additional, Karivedu, Vidhya, additional, Bhateja, Priyanka, additional, Bonomi, Marcelo, additional, Valentin, Sasha, additional, Gamez, Mauricio E., additional, Konieczkowski, David J., additional, Baliga, Sujith, additional, Grecula, John C., additional, Blakaj, Dukagjin M., additional, Gogineni, Emile, additional, Mitchell, Darrion L., additional, Denko, Nicholas C., additional, Spakowicz, Daniel, additional, and Jhawar, Sachin R., additional

Published
2024
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6. Supplementary Table 3 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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7. FIGURE 2 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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8. Supplementary Table 5 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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9. Supplementary Table 1 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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10. Supplementary Figure 1 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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11. FIGURE 1 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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12. Supplementary Table 6 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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13. Supplementary Table 4 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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14. Supplementary Table 2 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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15. Data from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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16. FIGURE 3 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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17. Supplementary Table 7 from A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset

Author

Wang, Cankun, primary, Ma, Anjun, primary, Li, Yingjie, primary, McNutt, Megan E., primary, Zhang, Shiqi, primary, Zhu, Jiangjiang, primary, Hoyd, Rebecca, primary, Wheeler, Caroline E., primary, Robinson, Lary A., primary, Chan, Carlos H.F., primary, Zakharia, Yousef, primary, Dodd, Rebecca D., primary, Ulrich, Cornelia M., primary, Hardikar, Sheetal, primary, Churchman, Michelle L., primary, Tarhini, Ahmad A., primary, Singer, Eric A., primary, Ikeguchi, Alexandra P., primary, McCarter, Martin D., primary, Denko, Nicholas, primary, Tinoco, Gabriel, primary, Husain, Marium, primary, Jin, Ning, primary, Osman, Afaf E.G., primary, Eljilany, Islam, primary, Tan, Aik Choon, primary, Coleman, Samuel S., primary, Denko, Louis, primary, Riedlinger, Gregory, primary, Schneider, Bryan P., primary, Spakowicz, Daniel, primary, and Ma, Qin, primary

Published
2024
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18. A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset

Author

Wang, Cankun, primary, Ma, Anjun, additional, Li, Yingjie, additional, McNutt, Megan E., additional, Zhang, Shiqi, additional, Zhu, Jiangjiang, additional, Hoyd, Rebecca, additional, Wheeler, Caroline E, additional, Robinson, Lary A, additional, Chan, Carlos H.F., additional, Zakharia, Yousef, additional, Dodd, Rebecca D., additional, Ulrich, Cornelia M, additional, Hardikar, Sheetal, additional, Churchman, Michelle L, additional, Tarhini, Ahmad A, additional, Singer, Eric A, additional, Ikeguchi, Alexandra P, additional, McCarter, Martin D., additional, Denko, Nicholas, additional, Tinoco, Gabriel, additional, Husain, Marium, additional, Jin, Ning, additional, Osman, Afaf E.G., additional, Eljilany, Islam, additional, Tan, Aik Choon, additional, Coleman, Samuel S, additional, Denko, Louis, additional, Riedlinger, Gregory, additional, Schneider, Bryan P., additional, Spakowicz, Daniel, additional, and Ma, Qin, additional

Published
2024
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28. The tumor microbiome reacts to hypoxia and can influence response to radiation treatment in colorectal cancer

Author

Benej, Martin, primary, Hoyd, Rebecca, additional, Kreamer, McKenzie, additional, Wheeler, Caroline E., additional, Grencewicz, Dennis J., additional, Choueiry, Fouad, additional, Chan, Carlos HF, additional, Zakharia, Yousef, additional, Ma, Qin, additional, Dodd, Rebecca D., additional, Ulrich, Cornelia M., additional, Hardikar, Sheetal, additional, Churchman, Michelle L., additional, Tarhini, Ahmad A., additional, Robinson, Lary A., additional, Singer, Eric A., additional, Ikeguchi, Alexandra P., additional, McCarter, Martin D., additional, Tinoco, Gabriel, additional, Husain, Marium, additional, Jin, Ning, additional, Tan, Aik Choon, additional, Osman, Afaf E.G., additional, Eljilany, Islam, additional, Riedlinger, Gregory, additional, Schneider, Brian P., additional, Benejova, Katarina, additional, Kery, Martin, additional, Papandreou, Ioanna, additional, Zhu, Jiangjiang, additional, Denko, Nicholas, additional, and Spakowicz, Daniel, additional

Published
2023
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29. Improving combination therapies: targeting A2B-adenosine receptor to modulate metabolic tumor microenvironment and immunosuppression.

Author

Evans, Jason V, Suman, Shankar, Goruganthu, Mounika Uttam L, Tchekneva, Elena E, Guan, Shuxiao, Arasada, Rajeswara Rao, Antonucci, Anneliese, Piao, Longzhu, Ilgisonis, Irina, Bobko, Andrey A, Driesschaert, Benoit, Uzhachenko, Roman V, Hoyd, Rebecca, Samouilov, Alexandre, Amann, Joseph, Wu, Ruohan, Wei, Lai, Pallerla, Aaditya, Ryzhov, Sergey V, and Feoktistov, Igor

Subjects
TUMOR microenvironment, NON-small-cell lung carcinoma, EPIDERMAL growth factor, ELECTRON paramagnetic resonance, IMMUNOSUPPRESSION
Abstract

Background We investigated the role of A2B-adenosine receptor in regulating immunosuppressive metabolic stress in the tumor microenvironment. Novel A2B-adenosine receptor antagonist PBF-1129 was tested for antitumor activity in mice and evaluated for safety and immunologic efficacy in a phase I clinical trial of patients with non-small cell lung cancer. Methods The antitumor efficacy of A2B-adenosine receptor antagonists and their impact on the metabolic and immune tumor microenvironment were evaluated in lung, melanoma, colon, breast, and epidermal growth factor receptor–inducible transgenic cancer models. Employing electron paramagnetic resonance, we assessed changes in tumor microenvironment metabolic parameters, including p O2, pH, and inorganic phosphate, during tumor growth and evaluated the immunologic effects of PBF-1129, including its pharmacokinetics, safety, and toxicity, in patients with non-small cell lung cancer. Results Levels of metabolic stress correlated with tumor growth, metastasis, and immunosuppression. Tumor interstitial inorganic phosphate emerged as a correlative and cumulative measure of tumor microenvironment stress and immunosuppression. A2B-adenosine receptor inhibition alleviated metabolic stress, downregulated expression of adenosine-generating ectonucleotidases, increased expression of adenosine deaminase, decreased tumor growth and metastasis, increased interferon γ production, and enhanced the efficacy of antitumor therapies following combination regimens in animal models (anti–programmed cell death 1 protein vs anti–programmed cell death 1 protein plus PBF-1129 treatment hazard ratio = 11.74 [95% confidence interval = 3.35 to 41.13], n = 10, P  < .001, 2-sided F test). In patients with non-small cell lung cancer, PBF-1129 was well tolerated, with no dose-limiting toxicities; demonstrated pharmacologic efficacy; modulated the adenosine generation system; and improved antitumor immunity. Conclusions Data identify A2B-adenosine receptor as a valuable therapeutic target to modify metabolic and immune tumor microenvironment to reduce immunosuppression, enhance the efficacy of immunotherapies, and support clinical application of PBF-1129 in combination therapies. [ABSTRACT FROM AUTHOR]

Published
2023
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30. The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors

Author

Wheeler, Caroline E., primary, Coleman,, Samuel S., additional, Hoyd, Rebecca, additional, Denko, Louis, additional, Chan, Carlos H.F., additional, Churchman, Michelle L., additional, Denko, Nicholas, additional, Dodd, Rebecca D., additional, Eljilany, Islam, additional, Hardikar, Sheetal, additional, Husain, Marium, additional, Ikeguchi, Alexandra P., additional, Jin, Ning, additional, Ma, Qin, additional, McCarter, Martin D., additional, Osman, Afaf E.G., additional, Robinson, Lary A., additional, Singer, Eric A., additional, Tinoco, Gabriel, additional, Ulrich, Cornelia M., additional, Zakharia, Yousef, additional, Spakowicz, Daniel, additional, Tarhini, Ahmad A., additional, and Tan, Aik Choon, additional

Published
2023
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31. A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset

Author

Wang, Cankun, primary, Ma, Anjun, additional, McNutt, Megan E., additional, Hoyd, Rebecca, additional, Wheeler, Caroline E., additional, Robinson, Lary A., additional, Chan, Carlos H.F., additional, Zakharia, Yousef, additional, Dodd, Rebecca D., additional, Ulrich, Cornelia M., additional, Hardikar, Sheetal, additional, Churchman, Michelle L., additional, Tarhini, Ahmad A., additional, Singer, Eric A., additional, Ikeguchi, Alexandra P., additional, McCarter, Martin D., additional, Denko, Nicholas, additional, Tinoco, Gabriel, additional, Husain, Marium, additional, Jin, Ning, additional, Osman, Afaf E.G., additional, Eljilany, Islam, additional, Tan, Aik Choon, additional, Coleman,, Samuel S., additional, Denko, Louis, additional, Riedlinger, Gregory, additional, Schneider, Bryan P., additional, Spakowicz, Daniel, additional, and Ma, Qin, additional

Published
2023
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32. Improving combination therapies: targeting A2B-adenosine receptor to modulate metabolic tumor microenvironment and immunosuppression

Author

Evans, Jason V, primary, Suman, Shankar, additional, Goruganthu, Mounika Uttam L, additional, Tchekneva, Elena E, additional, Guan, Shuxiao, additional, Arasada, Rajeswara Rao, additional, Antonucci, Anneliese, additional, Piao, Longzhu, additional, Ilgisonis, Irina, additional, Bobko, Andrey A, additional, Driesschaert, Benoit, additional, Uzhachenko, Roman V, additional, Hoyd, Rebecca, additional, Samouilov, Alexandre, additional, Amann, Joseph, additional, Wu, Ruohan, additional, Wei, Lai, additional, Pallerla, Aaditya, additional, Ryzhov, Sergey V, additional, Feoktistov, Igor, additional, Park, Kyungho P, additional, Kikuchi, Takefumi, additional, Castro, Julio, additional, Ivanova, Alla V, additional, Kanagasabai, Thanigaivelan, additional, Owen, Dwight H, additional, Spakowicz, Daniel J, additional, Zweier, Jay L, additional, Carbone, David P, additional, Novitskiy, Sergey V, additional, Khramtsov, Valery V, additional, Shanker, Anil, additional, and Dikov, Mikhail M, additional

Published
2023
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33. Abstract 6574: Systematic analysis of the predictive gene expression signatures of immunotherapies across multiple cancer types using IOSig

Author

Coleman, Samuel, primary, Wheeler, Caroline, additional, Hoyd, Rebecca, additional, Denko, Louis, additional, Lin, Ching-Nung, additional, Fadlullah, Muhammad Z., additional, Hu-Lieskovan, Siwen, additional, Chung, Christine, additional, Tarhini, Ahmad A., additional, Spakowicz, Daniel, additional, and Tan, Aik Choon, additional

Published
2023
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34. Abstract 4435: A causal modeling platform for testing lifestyle interventions on the microbiome and response to immunotherapy

Author

Pallerla, Aaditya, primary, Conrad, Bailey, additional, Bibi, Amna, additional, Williams, Nyelia, additional, Wheeler, Caroline, additional, Hoyd, Rebecca, additional, Suman, Shankar, additional, Amann, Joseph, additional, Liu, Yangyang, additional, Bittoni, Marisa, additional, Zhang, Shiqi, additional, Grogan, Madison, additional, Anand, Alvin, additional, Afrah, Najma, additional, Presley, Carolyn, additional, Tabung, Fred K., additional, Li, Lang, additional, Vodovotz, Yael, additional, Zhu, Jiangjiang, additional, Carbone, David P., additional, Clinton, Steven K., additional, and Spakowicz, Daniel, additional

Published
2023
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37. Inferring the role of the microbiome on survival in patients treated with immune checkpoint inhibitors: causal modeling, timing, and classes of concomitant medications

Author

Spakowicz, Daniel, Hoyd, Rebecca, Muniak, Mitchell, Husain, Marium, Bassett, James S., Wang, Lei, Tinoco, Gabriel, Patel, Sandip H., Burkart, Jarred, Miah, Abdul, Li, Mingjia, Johns, Andrew, Grogan, Madison, Carbone, David P., Verschraegen, Claire F., Kendra, Kari L., Otterson, Gregory A., Li, Lang, Presley, Carolyn J., and Owen, Dwight H.

Published
2020
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38. Abstract A021: Older adult-specific microbes correlate with treatment response and markers of T-cell senescence in NSCLC

Author

Spakowicz, Daniel, primary, Hoyd, Rebecca, additional, Wheeler, Caroline E., additional, Williams, Nyelia, additional, Bibi, Amna, additional, Husain, Marium, additional, Rajamouli, Srichandhana, additional, Suman, Shankar, additional, Amann, Joseph, additional, Grogan, Madison, additional, Vibhakar, Pooja, additional, Owen, Dwight H., additional, Carbone, David P., additional, Rosko, Ashley, additional, Burd, Christin E., additional, and Presley, Carolyn J., additional

Published
2023
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39. Abstract PR004: Older adult-specific microbes correlate with treatment response and markers of T-cell senescence in NSCLC

Author

Spakowicz, Daniel, primary, Hoyd, Rebecca, additional, Wheeler, Caroline E., additional, Williams, Nyelia, additional, Bibi, Amna, additional, Husain, Marium, additional, Rajamouli, Srichandhana, additional, Suman, Shankar, additional, Amann, Joseph, additional, Grogan, Madison, additional, Vibhakar, Pooja, additional, Owen, Dwight H., additional, Carbone, David P., additional, Rosko, Ashley, additional, Burd, Christin E., additional, and Presley, Carolyn J., additional

Published
2023
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40. Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers

Author

Dhakal, Aastha, primary, Upadhyay, Rituraj, additional, Wheeler, Caroline, additional, Hoyd, Rebecca, additional, Karivedu, Vidhya, additional, Gamez, Mauricio E., additional, Valentin, Sasha, additional, Vanputten, Meade, additional, Bhateja, Priyanka, additional, Bonomi, Marcelo, additional, Konieczkowski, David J., additional, Baliga, Sujith, additional, Mitchell, Darrion L., additional, Grecula, John C., additional, Blakaj, Dukagjin M., additional, Denko, Nicholas C., additional, Jhawar, Sachin R., additional, and Spakowicz, Daniel, additional

Published
2022
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41. 1311 The melanoma tumor microbiome as a predictor of outcomes in patients with metastatic disease treated with immune checkpoint inhibitors

Author

Wheeler, Caroline, primary, Hoyd, Rebecca, additional, Tan, Aik Choon, additional, Ulrich, Neli, additional, Tinoco, Gabriel, additional, Owen, Dwight, additional, Ose, Jennifer, additional, McCarter, Martin, additional, Sukrithan, Vineeth, additional, Ikeguchi, Alexandra, additional, Chan, Carlos, additional, Zakharia, Yousef, additional, Dodd, Rebecca, additional, Hardikar, Sheetal, additional, Weiner, George, additional, Kim, Youngchul, additional, Jin, Ning, additional, Liu, YunZhou, additional, Denko, Nicholas, additional, Husain, Marium, additional, Carpten, John, additional, Singer, Eric, additional, Robinson, Lary, additional, Dalton, William (Bill), additional, Churchman, Michelle, additional, Spakowicz, Daniel, additional, and Tarhini, Ahmad, additional

Published
2022
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42. Immune checkpoint inhibitor-induced hepatitis injury: risk factors, outcomes, and impact on survival

Author

Miah, Abdul, primary, Tinoco, Gabriel, additional, Zhao, Songzhu, additional, Wei, Lai, additional, Johns, Andrew, additional, Patel, Sandip, additional, Li, Mingjia, additional, Grogan, Madison, additional, Lopez, Gabrielle, additional, Husain, Marium, additional, Hoyd, Rebecca, additional, Mumtaz, Khalid, additional, Meara, Alexa, additional, Bertino, Erin M., additional, Kendra, Kari, additional, Spakowicz, Daniel, additional, Otterson, Gregory A., additional, Presley, Carolyn J., additional, and Owen, Dwight H., additional

Published
2022
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44. Abstract 3523: A Black Raspberry dietary intervention to modify the gut microbiome and improve the response to immune checkpoint inhibitors

Author

Bibi, Amna, primary, Pallerla, Aaditya, additional, Williams, Nyelia, additional, Wheeler, Caroline, additional, Hoyd, Rebecca, additional, Suman, Shankar, additional, Amann, Joseph, additional, Goruganthu, Mounika, additional, Okimoto, Tamio, additional, Liu, Yangyang, additional, Bittoni, Marisa, additional, Shi, Ni, additional, Zhang, Shiqi, additional, Anand, Alvin, additional, Heitman, Kristen, additional, Mendelson, Maxine, additional, Grainger, Elizabeth M., additional, Grogan, Madison, additional, Presley, Carolyn J., additional, Tabung, Fred K., additional, Li, Lang, additional, Vodovotz, Yael, additional, Zhu, Jiangjiang, additional, Carbone, David P., additional, Chen, Tong, additional, Clinton, Steven K., additional, and Spakowicz, Daniel, additional

Published
2022
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45. 1417-P: Gut Microbiome Translocation to Visceral Adipose Tissue Promotes Recruitment of Adipose-Specific Neutrophils in Human Obesity

Author

SHANTARAM, DHARTI, primary, BLASZCZAK, ALECIA M., additional, HOYD, REBECCA, additional, SMITH, ALAN, additional, ANTWI, LINDA, additional, LIU, JOEY Z., additional, WRIGHT, VALERIE P., additional, BRADLEY, DAVID, additional, LIU, YUNZHOU, additional, WILLIAMS, NYELIA F., additional, SPAKOWICZ, DAN, additional, and HSUEH, WILLA, additional

Published
2022
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46. The effect of the microbiome on immune checkpoint inhibitor toxicity in patients with melanoma.

Author

Williams, Nyelia, primary, Hoyd, Rebecca, additional, Wheeler, Caroline E., additional, Lynn, Mari, additional, Bibi, Amna, additional, Gray, Shannon, additional, Bodner, Michael, additional, Arya, Namrata, additional, Roberts, Scott, additional, Hoang, Phuong, additional, Apparicio, Jessica, additional, Merrill, Deanna, additional, Wu, Richard Cheng Han, additional, Verschraegen, Claire F., additional, Burd, Christin Elizabeth, additional, Kendra, Kari Lynn, additional, and Spakowicz, Daniel, additional

Published
2022
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47. A Geriatric Assessment Intervention to Reduce Treatment Toxicity Among Older Adults With Advanced Lung Cancer: A Subgroup Analysis From a Cluster Randomized Controlled Trial

Author

Presley, Carolyn J., primary, Mohamed, Mostafa R., additional, Culakova, Eva, additional, Flannery, Marie, additional, Vibhakar, Pooja H., additional, Hoyd, Rebecca, additional, Amini, Arya, additional, VanderWalde, Noam, additional, Wong, Melisa L., additional, Tsubata, Yukari, additional, Spakowicz, Daniel J., additional, and Mohile, Supriya G., additional

Published
2022
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50. Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions

Author

Liu, Jason, primary, Spakowicz, Daniel J., additional, Ash, Garrett I., additional, Hoyd, Rebecca, additional, Ahluwalia, Rohan, additional, Zhang, Andrew, additional, Lou, Shaoke, additional, Lee, Donghoon, additional, Zhang, Jing, additional, Presley, Carolyn, additional, Greene, Ann, additional, Stults-Kolehmainen, Matthew, additional, Nally, Laura M., additional, Baker, Julien S., additional, Fucito, Lisa M., additional, Weinzimer, Stuart A., additional, Papachristos, Andrew V., additional, and Gerstein, Mark, additional

Published
2021
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