781 results on '"Human norovirus"'
Search Results
2. Comparison of four concentration methods of adenovirus, norovirus and rotavirus in tap water
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Elfellaki, Nouhaila, Berrouch, Salma, Biary, Abdelkader, Goïta, Simeon, Rafi, Houda, Lachkar, Hibatallah, Dehhani, Oussama, de Rougemont, Alexis, Bourlet, Thomas, and Hafid, Jamal Eddine
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- 2024
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3. Interactions between human norovirus and intestinal microbiota/microbes: A scoping review
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Yang, Yaqi, An, Ran, Lyu, Chenang, and Wang, Dapeng
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- 2024
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4. Human intestinal enteroids and predictive models validate the operational limits of sanitizers used for viral disinfection of vegetable process wash water
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Allende, Ana, Férez-Rubio, José Antonio, Tudela, Juan Antonio, Aznar, Rosa, Gil, Maria Isabel, Sánchez, Gloria, and Randazzo, Walter
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- 2024
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5. Human intestinal enteroids for evaluating the persistence of infectious human norovirus in raw surface freshwater
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Esseili, Malak A., Narwankar, Revati, Hooda, Riya, Costantini, Veronica, Estes, Mary K., Vinjé, Jan, and Kassem, Issmat I.
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- 2025
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6. The Potential Effect of Propolis on Norovirus Viral Load: An Experimental Research using Balb/c Mice.
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Rusdi, Warda E., Soetjipto, Lusida, Maria I., Farindra, Irmawan, Suwito, Bambang E., Rusdi, Muhammad S., Benge, Wilhemus D. M. R., Farmananda, Irsandi R., Hanifa, Mahdiyah H., and Hidayat
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PROPOLIS ,NOROVIRUS diseases ,VIRAL load ,DIARRHEA in children ,LABORATORY mice - Abstract
Norovirus infection is a significant public health concern, particularly among children, due to its association with diarrhea. The current management strategies for Norovirus primarily focus on rehydration and symptomatic relief. This research was performed to examine the effects of propolis on the viral load and the severity of diarrhea caused by Human Norovirus (HuNoV) infection. In this experimental research, a total of 21 BALB/c mice were randomly assigned to three groups: Group K(-) (control group), Group K(+) (exposed solely to HuNoV), and Group P (exposed to HuNoV with propolis intervention). A 1 ml suspension of HuNoV was administered to the mice via the intraperitoneal route. Rapid Diagnostic Tests (RDT) Norovirus Kit and Real-Time Polymerase Chain Reaction (RT-PCR) were performed 48 hours post-infection to confirm successful viral infection. The severity of diarrhea was assessed using the paper towel method. Propolis was administered as a suspension at a dosage of 2.5 mg/kg body weight for five days. On day eight, the mice were euthanized, and fecal samples were collected from the colon for further analysis. RT-PCR was conducted again to quantify the viral load. The results on day eight indicated a significant reduction in viral load in Group P, whereas Group K(-) showed no such reduction. Furthermore, the severity of diarrhea in the mice treated with propolis was found lower. These findings suggest that propolis contributes to the reduction of viral load and the diarrhea severity in mice infected with Norovirus. [ABSTRACT FROM AUTHOR]
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- 2025
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7. Correlation of Genogroup I, Genotype 1 (GI.1) Norovirus Neutralizing Antibody Levels With GI.1 Histo-Blood Group Antigen–Blocking Antibody Levels.
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Atmar, Robert L, Ettayebi, Khalil, Neill, Frederick H, Braun, Ralph P, Sherwood, James, Ramani, Sasirekha, and Estes, Mary K
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CLINICAL trial registries , *NOROVIRUSES , *IMMUNOGLOBULINS , *ANTIGENS , *VACCINATION - Abstract
Background The in vitro cultivation of human noroviruses allows a comparison of antibody levels measured in neutralization and histo-blood group antigen (HBGA)–blocking assays. Methods Serum samples collected during the evaluation of an investigational norovirus vaccine (HIL-214 [formerly TAK-214]) were assayed for neutralizing antibody levels against the vaccine's prototype Norwalk virus/genogroup I, genotype 1 (GI.1) (P1) virus strain. Results were compared with those previously determined using HBGA-blocking assays. Results Neutralizing antibody seroresponses were observed in 83% of 24 vaccinated adults, and antibody levels were highly correlated (r = 0.81; P <.001) with those measured by HBGA blocking. Conclusions Genogroup I, genotype 1 (GI.1)–specific HBGA-blocking antibodies are a surrogate for neutralization of GI.1 norovirus. Clinical Trials Registration. Clinicaltrials.gov NCT02475278 [ABSTRACT FROM AUTHOR]
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- 2024
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8. Ultraviolet (UV-C) Light Systems for the Inactivation of Feline Calicivirus and Tulane Virus in Model Fluid Foods.
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Corson, E., Pendyala, B., Patras, A., and D'Souza, D. H.
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Conventional UV-C (254 nm) inactivation technologies have limitations and potential operator-safety risk. To overcome these disadvantages, novel UV-C light-emitting diodes (LED) are developed and investigated for their performance. This study aimed to determine the inactivation of human norovirus (HuNoV) surrogates, Tulane virus (TV), and feline calicivirus (FCV-F9), by UV-C (254 nm) in comparison to UV-C LED (279 nm) in phosphate-buffered saline (PBS) and coconut water (CW). Five-hundred microliters of FCV-F9 (~ 5 log plaque forming units (PFU)/mL) or TV (~ 6 log PFU/mL) were added to 4.5 mL PBS or CW in continuously stirred glass beakers and exposed to 254 nm UV-C for 0 up to 15 min (maximum dosage of 33.89 mJ/cm
2 ) or 279 nm UV-C LED for 0 up to 2.5 min (maximum dosage of 7.03 mJ/cm2 ). Recovered viruses were assayed in duplicate from each treatment replicated thrice. Mixed model analysis of variance was used for data analysis. Significantly lower D10 values were obtained in PBS and CW (p ≤ 0.05) for both tested viruses using UV-C LED (279 nm) where FCV-F9 showed D10 values of 7.08 ± 1.75 mJ/cm2 and 3.75 ± 0.11 mJ/cm2 , while using UV-C (254 nm) showed D10 values of 13.81 ± 0.40 mJ/cm2 and 6.43 ± 0.44 mJ/cm2 in PBS and CW, respectively. Similarly, lower D10 values were obtained for TV of 3.91 ± 1.03 mJ/cm2 and 4.26 ± 1.02 mJ/cm2 with 279 nm UV-C LED and were 18.76 ± 3.16 mJ/cm2 and 10.21 ± 1.48 mJ/cm2 with 254 nm UV-C in PBS and CW, respectively. Viral resistance to these treatments was fluid-matrix dependent. These findings indicate that use of 279 nm UV-C LED is more effective in inactivating HuNoV surrogates than conventional 254 nm UV-C in the tested fluids. [ABSTRACT FROM AUTHOR]- Published
- 2024
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9. Machine Learning and Imputation to Characterize Human Norovirus Genotype Susceptibility to Sodium Hypochlorite.
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Hamilton, Allyson N., Maes, Flor, Reyes, Génesis Yosbeth Chávez, Almeida, Giselle, Li, Dan, Uyttendaele, Mieke, and Gibson, Kristen E.
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Human norovirus (HuNoV) is the leading cause of foodborne illness in the developed world and a major contributor to gastroenteritis globally. Its low infectious dose and environmental persistence necessitate effective disinfection protocols. Sodium hypochlorite (NaOCl) bleach is a widely used disinfectant for controlling HuNoV transmission via contaminated fomites. This study aimed to evaluate the susceptibility of HuNoV genotypes (n = 11) from genogroups I, II, and IV to NaOCl in suspension. HuNoV was incubated for 1 and 5 min in diethyl pyrocarbonate (DEPC) treated water containing 50 ppm, 100 ppm, or 150 ppm NaOCl, buffered to maintain a pH between 7.0 and 7.5. Neutralization was achieved by a tenfold dilution into 100% fetal bovine serum. RNase pre-treatment followed by RT-qPCR was used to distinguish between infectious and non-infectious HuNoV. Statistical methods, including imputation, machine learning, and generalized linear models, were applied to process and analyze the data. Results showed that NaOCl reduced viral loads across all genotypes, though efficacy varied. Genotypes GI.1, GII.4 New Orleans, and GII.4 Sydney were the least susceptible, while GII.6 and GII.13 were the most susceptible. All NaOCl concentrations above 0 ppm were statistically indistinguishable, and exposure duration did not significantly affect HuNoV reduction, suggesting rapid inactivation at effective concentrations. For instance, some genotypes were completely inactivated within 1 min, rendering extended exposure unnecessary, while other genotypes maintained the initial concentration at both 1 and 5 min, indicating a need for longer contact times. These findings underscore the critical role of HuNoV genotype selection in testing disinfection protocols and optimizing NaOCl concentrations. Understanding HuNoV susceptibility to NaOCl bleach informs better disinfection strategies, aiding public health and food safety authorities in reducing HuNoV transmission and outbreaks. [ABSTRACT FROM AUTHOR]
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- 2024
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10. Utilizing Zebrafish Embryos for Replication of Tulane Virus: A Human Norovirus Surrogate.
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Chandran, Sahaana and Gibson, Kristen E.
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The zebrafish larvae/embryo model has been shown to support the replication of seven strains (G1.7[P7], GII.2[P16], GII.3[P16], GII.4[P4], GII.4[P16], GII.6[P7], and GII.17[P13]) of human norovirus (HuNoV). However, due to challenges in consistently obtaining HuNoV-positive stool samples from clinical sources, evaluating HuNoV surrogates in this model is highly valuable. This study assesses the potential of zebrafish embryos and larvae as a model for Tulane virus (TuV) replication. Three infection methods were examined: microinjection, immersion, and feeding. Droplet digital PCR was used to quantify viral RNA across all three infection methods. Microinjection of 3 nL of TuV into zebrafish embryos (< 6-h post-fertilization) resulted in significant replication, with viral RNA levels reaching 6.22 logs at 4-day post-infection. In contrast, the immersion method showed no replication after immersing 4-day post-fertilization (dpf) larvae in TuV suspension for 6 h. Similarly, no replication was observed with the feeding method, where Paramecium caudatum loaded with TuV were fed to 4 dpf larvae. The findings indicate that the zebrafish embryo model supports TuV replication through the microinjection method, suggesting that TuV may serve as a useful surrogate for studying HuNoV pathogenesis. Additionally, TuV can be utilized in place of HuNoV in method optimization studies using the zebrafish embryo model, circumventing the limited availability of HuNoV. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Nucleic Acid Aptamers for Human Norovirus GII.4 and GII.17 Virus-Like Particles (VLPs) Exhibit Specific Binding and Inhibit VLPs from Entering Cells
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Cheng C, Sun M, Li J, Xue Y, Cai X, Liu J, Wang X, Xu S, Xie Y, and Zhang J
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human norovirus ,selex ,aptamer ,diagnostics ,therapeutics ,Medicine (General) ,R5-920 - Abstract
Chao Cheng,1,* Minjia Sun,1– 3,* Jingjing Li,1,* Yitong Xue,1 Xia Cai,4 Jing Liu,1 Xiaolian Wang,5 Shouhong Xu,2 Youhua Xie,1 Junqi Zhang1 1MOE/NHC/CAMS Key Laboratory of Medical Molecular Virology, Shanghai Institute of Infectious Disease and Biosecurity, School of Basic Medical Sciences, Fudan University, Shanghai, 200032, People’s Republic of China; 2Key Laboratory for Advanced Materials and Department of Chemistry, East China University of Science and Technology, Shanghai, 200237, People’s Republic of China; 3Zhejiang CONBA Pharmaceutical Co., Ltd, Hangzhou, 310052, People’s Republic of China; 4Shanghai Medical College, Biosafety Level 3 Laboratory, Fudan University, Shanghai, 200032, People’s Republic of China; 5Department of Pathogeny Microbiology and Preventive Medicine, School of Medicine, Hexi University, Zhangye, 734000, People’s Republic of China*These authors contributed equally to this workCorrespondence: Junqi Zhang, Email junqizhang@fudan.edu.cn; Youhua Xie, Email yhxie@fudan.edu.cnPurpose: Human noroviruses (HuNoVs) are the main cause of non-bacterial acute gastroenteritis. Due to antigenic diversity, the discovery of ligands that can sensitively and specifically detect HuNoVs remains challenging. Limited by laboratory culture, no vaccines or drugs have been developed against HuNoVs. Here, we screened nucleic acid aptamers against the widespread HuNoV GII.4 and emerging HuNoV GII.17.Methods: After ten rounds of sieving for HuNoV GII.4 and GII.17 virus-like particles (VLPs), eight ssDNA aptamers were generated and characterized for each genotype.Results: Four of the eight aptamers generated for GII.4 VLP had dissociation constants (Kd) less than 100 nM, and all aptamers for GII.17 VLP had Kd less than 10 nM. All aptamers bound to their targets in VLP concentration-dependent manner. Two aptamers (AP4-2 and AP17-4) were selected for enzyme-linked aptamer sorbent assay (ELASA) and further analysis. Binding affinity was enhanced as the concentration of both aptamer and VLPs increased. The specificity of the aptamers was verified by ELASA and dot blotting. AP4-2 and AP17-4 were able to differentiate HuNoV from other diarrhea-causing pathogens or unrelated proteins (P < 0.0001). VLP/porcine gastric mucin (PGM) binding blockade assays revealed that AP4-2 and AP17-4 blocked the binding of HuNoV VLPs to PGM. VLP internalization inhibition assays showed that at a concentration of 0.5 μM, both AP4-2 and AP17-4 effectively inhibited attachment and internalization of HuNoV VLPs into 293T cell (P < 0.05). Cell viability assays confirmed that aptamers did not induce cellular toxicity.Conclusion: AP4-2 and AP17-4 showed strong affinity and specificity for their target VLPs and represent promising candidates for HuNoV capture and detection. This is the first study to demonstrate that aptamers can effectively inhibit HuNoV VLPs from binding to or entering cells, thus providing a new concept for the treatment of HuNoVs. Keywords: human norovirus, SELEX, aptamer, diagnostics, therapeutics
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- 2025
12. Virus Association with Bacteria and Bacterial Cell Components Enhance Virus Infectivity.
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Deng, Wenjun, Almeida, Giselle, and Gibson, Kristen E.
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The transmission and infection of enteric viruses can be influenced by co-existing bacteria within the environment and host. However, the viral binding ligands on bacteria and the underlying interaction mechanisms remain unclear. This study characterized the association of norovirus surrogate Tulane virus (TuV) and murine norovirus (MNV) as well as the human enteric virus Aichi virus (AiV) with six bacteria strains (Pantoea agglomerans, Pantoea ananatis, Bacillus cereus, Enterobacter cloacae, Exiguobacterium sibiricum, Pseudomonas spp.). At room temperature, the viruses bound to all bacteria in strain-dependent rates and remained bound for at least 2 h. The virus association with two gram-positive bacteria B. cereus and E. sibiricum was less efficient than gram-negative bacteria. Next, the bacterial envelope components including lipopolysaccharides (LPS), extracellular polymeric substances (EPS), and peptidoglycan (PG) from selected strains were co-incubated with viruses to evaluate their effect on virus infectivity. All the tested bacteria components significantly increased virus infection to variable degrees as compared to PBS. The LPS of E. coli O111:B4 resulted in the greatest increases of infection by 0.19 log PFU for TuV as determined by plaque assay. Lastly, bacterial whole cell lysate of B. cereus and E. cloacae was examined for their impact on the infectivity of MNV and TuV. The co-incubation with whole cell lysates significantly increased the infectivity of TuV by 0.2 log PFU but not MNV. This study indicated that both the individual bacteria components and whole bacterial cell lysate can enhance virus infectivity, providing key insights for understanding virus–bacteria interaction. [ABSTRACT FROM AUTHOR]
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- 2025
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13. Detection of Porcine Norovirus GII.18 Strains in Pigs Using Broadly Reactive RT-qPCR Assay for Genogroup II Noroviruses.
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Gupta, Ankita K., Heinonen, Mari, König, Emilia, Mikkonen, Venla, and Maunula, Leena
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Noroviruses, belonging to the family Caliciviridae, are classified into at least ten genogroups (G) based on their major capsid protein (VP1). The common genogroup to be identified in both humans and pigs is GII, although porcine noroviruses (PoNoVs) belong to genotypes of their own (GII.11, GII.18, and GII.19). So far, PoNoVs have not been studied much in Finland, possibly due to their rather symptomless nature in pigs. In the present study, we enrolled a total of 189 fecal samples collected from pigs from Finnish farms. Samples were taken from 12 farms in 2010, 2019 and 2020. We analyzed feces from growing pigs ranging from 2.1 to 6 months of age. RNA was extracted from fecal suspensions using a commercial viral RNA extraction kit, followed by RT (reverse transcription)-qPCR. The genotypes were determined by Sanger sequencing of the PCR fragments amplified by conventional PCR. Of the 12 farms, 6 (50%) had at least one PoNoV-infected pig. Altogether 18 (9.5%) of the 189 pigs tested positive for PoNoVs. Pigs mostly aged over 4 months were infected with PoNoVs. Eventually, 12 positive samples were determined as genotype GII.18. We could demonstrate the presence of PoNoVs in Finnish pigs. In future, more studies in which longer sequences from PoNoV genome can be obtained, are required. [ABSTRACT FROM AUTHOR]
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- 2025
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14. Development of an intestinal mucosa ex vivo co-culture model to study viral infections.
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Barreto-Duran, Emilia, Synowiec, Aleksandra, Szczepański, Artur, Gałuszka-Bulaga, Adrianna, Węglarczyk, Kazimierz, Baj-Krzyworzeka, Monika, Siedlar, Maciej, Bochenek, Michał, Dufva, Martin, Dogan, Asli Aybike, Lenart, Marzena, and Pyrc, Krzysztof
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SARS-CoV-2 , *INTESTINAL mucosa , *VIRUS diseases , *MUCOUS membranes , *BASAL lamina - Abstract
Studying viral infections necessitates well-designed cell culture models to deepen our understanding of diseases and develop effective treatments. In this study, we present a readily available ex vivo 3D co-culture model replicating the human intestinal mucosa. The model combines fully differentiated human intestinal epithelium (HIE) with human monocyte-derived macrophages (hMDMs) and faithfully mirrors the in vivo structural and organizational properties of intestinal mucosal tissues. Specifically, it mimics the lamina propria, basement membrane, and the air-exposed epithelial layer, enabling the pioneering observation of macrophage migration through the tissue to the site of viral infection. In this study, we applied the HIE-hMDMs model for the first time in viral infection studies, infecting the model with two globally significant viruses: severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and human norovirus GII.4. The results demonstrate the model's capability to support the replication of both viruses and show the antiviral role of macrophages, determined by their migration to the infection site and subsequent direct contact with infected epithelial cells. In addition, we evaluated the production of cytokines and chemokines in the intestinal niche, observing an increased interleukin-8 production during infection. A parallel comparison using a classical in vitro cell line model comprising Caco-2 and THP-1 cells for SARS-CoV-2 experiments confirmed the utility of the HIE-hMDMs model in viral infection studies. Our data show that the ex vivo tissue models hold important implications for advances in virology research. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Inactivation of Hepatitis A Virus and Feline Calicivirus on Model Food Contact Surfaces by Ultraviolet Light (UV-C) Systems.
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Polen, Breanna, Pendyala, Brahmaiah, Patras, Ankit, and D'Souza, Doris H.
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HEPATITIS A virus ,HEPATITIS viruses ,VIRAL hepatitis ,VIRUS inactivation ,ULTRAVIOLET radiation - Abstract
Food contact surfaces can harbor and transmit pathogens leading to outbreaks. Decontamination strategies that are user- and environmentally-friendly without toxic by-product formation are needed. Novel UV-C light-emitting diode (LED) technologies are being explored to deliver the required dose to inactivate viruses in food-processing environments. The objective of this study was to compare the effects of 279 nm UV-C LED to 254 nm UV-C against hepatitis A virus (HAV) and feline calicivirus (FCV, a cultivable human norovirus surrogate) on stainless-steel, ceramic, and glass surfaces. Viruses were surface spread on sterile stainless-steel or ceramic coupons (100 μL on 2 × 2 cm
2 ), or glass discs (50 μL on 1 × 1 cm2 ), air-dried, and UV-C-treated for up to 3.75 min (surface dose = 0–49.2 mJ/cm2 for HAV and 0–24.6 mJ/cm2 for FCV). Each triplicate treatment was assayed in duplicate, and data were statistically analyzed. The D10 -values for HAV treated with UV-C at 254 nm on stainless-steel, ceramic, and glass were 9.48 ± 0.34, 14.53 ± 2.52, and 6.91 ± 1.93 mJ/cm2 , while with UV-C LED at 279 nm were 19.53 ± 2.45, 26.05 ± 0.60, and 8.77 ± 2.08 mJ/cm2 , respectively. The D10 -values for FCV treated with UV-C at 254 nm on stainless-steel, ceramic, and glass were 3.65 ± 0.06, 6.25 ± 1.90, and 4.69 ± 0.03 mJ/cm2 , while with UV-C LED at 279 nm were 7.097 ± 2.11, 8.31 ± 2.12, and 7.88 ± 0.86 mJ/cm2 , respectively. Higher 279 nm UV-C doses were needed to inactivate HAV and FCV compared to 254 nm UV-C on the tested surfaces. Novel UV-C LED systems using appropriate doses show promise to inactivate foodborne viruses on food contact surfaces. [ABSTRACT FROM AUTHOR]- Published
- 2024
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16. Virus Shedding and Diarrhea: A Review of Human Norovirus Genogroup II Infection in Gnotobiotic Pigs.
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Nyblade, Charlotte and Yuan, Lijuan
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VIRAL shedding , *NOROVIRUSES , *SWINE , *DIARRHEA , *PANDEMICS , *BOVINE viral diarrhea virus - Abstract
For nearly twenty years, gnotobiotic (Gn) pigs have been used as a model of human norovirus (HuNoV) infection and disease. Unique in their ability to develop diarrhea and shed virus post oral challenge, Gn pigs have since been used to evaluate the infectivity of several genogroup II HuNoV strains. Nearly all major pandemic GII.4 variants have been tested in Gn pigs, with varying rates of infectivity. Some induce an asymptomatic state despite being shed in large quantities in stool, and others induce high incidence of both diarrhea and virus shedding. Non-GII.4 strains, including GII.12 and GII.6, have also been evaluated in Gn pigs. Again, rates of diarrhea and virus shedding tend to vary between studies. Several factors may influence these findings, including age, dosage, biological host factors, or bacterial presence. The impact of these factors is nuanced and requires further evaluation to elucidate the exact mechanisms behind increases or decreases in infection rates. Regardless, the value of Gn pig models in HuNoV research cannot be understated, and the model will surely continue to contribute to the field in years to come. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Transcriptional profiling of zebrafish intestines identifies macrophages as host cells for human norovirus infection
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Emma Roux, Reegan J. Willms, Jana Van Dycke, Álvaro Cortes Calabuig, Lore Van Espen, Geert Schoofs, Jelle Matthijnssens, Johan Neyts, Peter de Witte, Edan Foley, and Joana Rocha-Pereira
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Human norovirus ,cellular tropism ,macrophages ,intestinal epithelium ,host cell identification ,host-virus interaction ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Human noroviruses (HuNoVs) are a major cause of diarrheal disease, yet critical aspects of their biology, including cellular tropism, remain unclear. Although research has traditionally focused on the intestinal epithelium, the hypothesis that HuNoV infects macrophages has been recurrently discussed and is investigated here using a zebrafish larval model. Through single-cell RNA sequencing of dissected zebrafish intestines, we unbiasedly identified macrophages as host cells for HuNoV replication, with all three open reading frames mapped to individual macrophages. Notably, HuNoV preferentially infects actively phagocytosing inflammatory macrophages. HuNoV capsid proteins and double-stranded RNA colocalized within intestinal macrophages of infected zebrafish larvae, and the negative-strand RNA intermediate was detected within FACS-sorted macrophages. Flow cytometry confirmed viral replication within these macrophages, constituting approximately 23% of HuNoV’s host cells. Identifying macrophages as host cells prompts a reevaluation of their role in HuNoV pathogenesis, offering new directions for understanding and controlling this infection.
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- 2024
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18. Bacillaceae serine proteases and Streptomyces epsilon-poly-l-lysine synergistically inactivate Caliciviridae by inhibiting RNA genome release
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Soh Yamamoto, Noriko Ogasawara, Yuka Sudo-Yokoyama, Sachiko Sato, Nozomu Takata, Nana Yokota, Tomomi Nakano, Kyoko Hayashi, Akira Takasawa, Mayumi Endo, Masako Hinatsu, Keitaro Yoshida, Toyotaka Sato, Satoshi Takahashi, Kenichi Takano, Takashi Kojima, Jun Hiraki, and Shin-ich Yokota
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Human norovirus ,Caliciviridae ,Bacillaceae serine proteases ,Epsilon-poly-l-lysine ,Natural products ,Medicine ,Science - Abstract
Abstract Human norovirus (HuNoV) is an enteric infectious pathogen belonging to the Caliciviridae family that causes occasional epidemics. Circulating alcohol-tolerant viral particles that are readily transmitted via food-borne routes significantly contribute to the global burden of HuNoV-induced gastroenteritis. Moreover, contact with enzymes secreted by other microorganisms in the environment can impact the infectivity of viruses. Hence, understanding the circulation dynamics of Caliciviridae is critical to mitigating epidemics. Accordingly, in this study, we screened whether environmentally abundant secretase components, particularly proteases, affect Caliciviridae infectivity. Results showed that combining Bacillaceae serine proteases with epsilon-poly-l-lysine (EPL) produced by Streptomyces—a natural antimicrobial—elicited anti-Caliciviridae properties, including against the epidemic HuNoV GII.4_Sydney_2012 strain. In vitro and in vivo biochemical and virological analyses revealed that EPL has two unique synergistic viral inactivation functions. First, it maintains an optimal pH to promote viral surface conformational changes to the protease-sensitive structure. Subsequently, it inhibits viral RNA genome release via partial protease digestion at the P2 and S domains in the VP1 capsid. This study provides new insights regarding the high-dimensional environmental interactions between bacteria and Caliciviridae, while promoting the development of protease-based anti-viral disinfectants.
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- 2024
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19. Investigation the Prevalence of Norovirus, Rotavirus, Human Bocavirus, and Adenovirus in Inpatient Children with Gastroenteritis in Tehran, Iran, During 2021-2022.
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Salavatiha, Zahra, Tavakoli, Ahmad, Kiani, Seyed Jalal, Rezvani, Mohammad Reza, Mokarinejad, Roya, and Monavari, Seyed Hamidreza
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DIARRHEA , *MOLECULAR epidemiology , *ACADEMIC medical centers , *NOROVIRUS diseases , *RETROVIRUS diseases , *DESCRIPTIVE statistics , *REVERSE transcriptase polymerase chain reaction , *AGE distribution , *DNA viruses , *FEVER , *HOSPITAL care of newborn infants , *RNA viruses , *RESEARCH , *NUCLEIC acids , *GASTRIC diseases , *GASTROENTERITIS , *DATA analysis software , *MICROBIOLOGY , *VOMITING , *PARVOVIRUS diseases , *DNA virus diseases , *HOSPITAL care of children , *MICROBIAL genetics , *NAUSEA - Abstract
Background and Aim: Acute gastroenteritis (AGE) is one of the prevalent factors that threaten human health and is among the main causes of childhood morbidity and fatality rates globally. Viruses are considered one of the main causes of AGE. The current investigation aimed to detect the molecular prevalence of four enteric viruses in AGE. Materials and Methods: One hundred gastrointestinal specimens were obtained from AGE patients from hospitals affiliated with the Iran University of Medical Sciences during 2021-2022. After viral nucleic acid extraction, a real-time Polymerase chain Reaction (Real-time-PCR) was performed to investigate five enteric viruses. Results: Among 100 patients, interested viruses were diagnosed in 32 (32%) of patients, who suffered from various gastrointestinal manifestations such as diarrhea, stomach pain, and vomiting. Norovirus (n=10, 32%) was the most common enteric virus, followed by Rotavirus (n=9, 29%), Bocavirus (n=8, 25%), and Adenovirus (n=5, 14). The most virus-positive patients were males (19/32) including Norovirus (7/10), Rotavirus (5/9), Bocavirus (4/8), and Adenovirus (3/5) samples. A high proportion of viruses was detected in children under 12 months. Conclusion:Our investigation was performed to detect the frequency of different enteric viruses in AGE patients. The finding indicated that Norovirus and Rotavirus are major viral pathogens inducing gastrointestinal infection in patients, respectively. Also, accurate diagnosis of gastrointestinal virus agents can help early treatment and prevent unnecessary prescription of antibiotics and drug resistance development. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Bile acid-sensitive human norovirus strains are susceptible to sphingosine-1-phosphate receptor 2 inhibition.
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Tenge, Victoria, Ayyar, B. Vijayalakshmi, Ettayebi, Khalil, Crawford, Sue E., Hayes, Nicole M., Yi-Ting Shen, Neill, Frederick H., Atmar, Robert L., and Estes, Mary K.
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SPHINGOSINE-1-phosphate , *VIRAL gastroenteritis , *FARNESOID X receptor , *NOROVIRUSES , *SMALL intestine , *BILE acids - Abstract
Human noroviruses (HuNoVs) are a diverse group of RNA viruses that cause endemic and pandemic acute viral gastroenteritis. Previously, we reported that many HuNoV strains require bile or bile acid (BA) to infect human jejunal intestinal enteroid cultures. BA was not essential for the replication of a pandemic-causing GII.4 HuNoV strain. We found the hydrophobic BA glycochenodeoxycholic acid (GCDCA) promotes the replication of the BA-dependent strain GII.3 in jejunal enteroids. Furthermore, we found that inhibition of the G-protein-coupled BA receptor, sphingosine-1-phosphate receptor 2 (S1PR2), by JTE-013, reduced GII.3 infection dose-dependently and inhibited GII.3 cellular uptake in enteroids. Herein, we sought to determine whether S1PR2 is required for other BA-dependent HuNoV strains, the BA-independent GII.4, and whether S1PR2 is required for BA-dependent HuNoV infection in HIEs from other small intestinal segments. We found a second S1PR2 inhibitor, GLPG2938, reduces GII.3 infection dose-dependently, and an S1PR2 agonist (CYM-5520) enhances GII.3 replication in the absence of GCDCA. GII.3 replication also is abrogated in the presence of JTE-013 and CYM-5520. JTE-013 inhibition of S1PR2 in jejunal HIEs reduces GI.1, GII.3, and GII.17 (BA-dependent) but not GII.4 Sydney (BA-independent) infection, providing additional evidence of strain-specific differences in HuNoV infection. Finally, GII.3 infection of duodenal, jejunal, and ileal lines derived from the same individual is reduced with S1PR2 inhibition, indicating a common mechanism of BA-dependent infection among multiple segments of the small intestine. Our results support a model where BA-dependent HuNoVs exploit BA effects on S1PR2 to infect the entire small intestine. IMPORTANCE Human noroviruses (HuNoVs) are important viral human pathogens that cause both outbreaks and sporadic gastroenteritis. These viruses are diverse, and many strains are capable of infecting humans. Our previous studies have identified strain-specific requirements for hydrophobic bile acids (BAs) to infect intestinal epithelial cells. Moreover, we identified a BA receptor, sphingosine-1-phosphate receptor 2 (S1PR2), required for infection by a BA-dependent strain. To better understand how various HuNoV strains enter and infect the small intestine and the role of S1PR2 in HuNoV infection, we evaluated infection by additional HuNoV strains using an expanded repertoire of intestinal enteroid cell lines. We found that multiple BA-dependent strains, but not a BA-independent strain, all require S1PR2 for infection. In addition, BA-dependent infection requires S1PR2 in multiple segments of the small intestine. Together, these results indicate that S1PR2 has value as a potential therapeutic target for BA-dependent HuNoV infection. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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21. Bacillaceae serine proteases and Streptomyces epsilon-poly-l-lysine synergistically inactivate Caliciviridae by inhibiting RNA genome release.
- Author
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Yamamoto, Soh, Ogasawara, Noriko, Sudo-Yokoyama, Yuka, Sato, Sachiko, Takata, Nozomu, Yokota, Nana, Nakano, Tomomi, Hayashi, Kyoko, Takasawa, Akira, Endo, Mayumi, Hinatsu, Masako, Yoshida, Keitaro, Sato, Toyotaka, Takahashi, Satoshi, Takano, Kenichi, Kojima, Takashi, Hiraki, Jun, and Yokota, Shin-ich
- Subjects
SERINE proteinases ,CALICIVIRUSES ,BACILLACEAE ,STREPTOMYCES ,PROTEOLYTIC enzymes ,VIRAL genomes ,PRESENILINS - Abstract
Human norovirus (HuNoV) is an enteric infectious pathogen belonging to the Caliciviridae family that causes occasional epidemics. Circulating alcohol-tolerant viral particles that are readily transmitted via food-borne routes significantly contribute to the global burden of HuNoV-induced gastroenteritis. Moreover, contact with enzymes secreted by other microorganisms in the environment can impact the infectivity of viruses. Hence, understanding the circulation dynamics of Caliciviridae is critical to mitigating epidemics. Accordingly, in this study, we screened whether environmentally abundant secretase components, particularly proteases, affect Caliciviridae infectivity. Results showed that combining Bacillaceae serine proteases with epsilon-poly-l-lysine (EPL) produced by Streptomyces—a natural antimicrobial—elicited anti-Caliciviridae properties, including against the epidemic HuNoV GII.4_Sydney_2012 strain. In vitro and in vivo biochemical and virological analyses revealed that EPL has two unique synergistic viral inactivation functions. First, it maintains an optimal pH to promote viral surface conformational changes to the protease-sensitive structure. Subsequently, it inhibits viral RNA genome release via partial protease digestion at the P2 and S domains in the VP1 capsid. This study provides new insights regarding the high-dimensional environmental interactions between bacteria and Caliciviridae, while promoting the development of protease-based anti-viral disinfectants. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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22. Efficacy of three EPA-registered antimicrobials and steam against two human norovirus surrogates on nylon carpets with two backing types.
- Author
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Jinge Huang, Fraser, Angela, and Xiuping Jiang
- Subjects
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CARPETS , *NOROVIRUSES , *ANTI-infective agents , *TENSILE strength , *NYLON , *TRICLOSAN , *WATER disinfection - Abstract
Carpet cleaning guidelines currently do not include the use of an antimicrobial, except after a bodily fluid event. To address this gap, we compared the efficacy of three antimicrobials--two hydrogen peroxide-based (H2O2) products (A and B) and one chlorine-based product (C)--and a steam treatment against two norovirus surrogates, specifically feline calicivirus (FCV) and Tulane virus (TuV). These tests were performed on nylon carpets with either water-permeable or waterproof backing types. The effect of repeated antimicrobial use on carpet properties was also evaluated. For a carpet with water-permeable backing, products A, B, and C achieved a 0.8, 3.1, and 0.9 log10 PFU/coupon reduction of FCV and 0.3, 2.5, and 0.4 log10 TCID50/coupon reduction of TuV, respectively, following a 30 min contact time. For carpet with waterproof backing, only product B achieved a 5.0 log10 PFU/coupon reduction of FCV and >3.0 log10 TCID50/coupon reduction of TuV, whereas products A and C achieved a 2.4 and 1.6 log10 PFU/coupon reduction of FCV and a 1.2 and 1.2 log10 TCID50/coupon reduction of TuV, respectively. Steam treatment achieved a = 5.2 log10 PFU/coupon reduction of FCV and a > 3.2 log10 TCID50/coupon reduction of TuV in 15 seconds on the carpet with both backing types. The repeated use of products A and B decreased the tensile strength of the carpet backing, while use of product B resulted in cracks on carpet fibers. Overall, steam treatment for 15 seconds was efficacious on both carpet types, but only product B achieved efficacy after a 30-minute exposure on the carpet with waterproof backing. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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23. N-glycoproteomic analyses of human intestinal enteroids, varying in histo-blood group geno- and phenotypes, reveal a wide repertoire of fucosylated glycoproteins.
- Author
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Nilsson, Jonas, Rimkute, Inga, Sihlbom, Carina, Tenge, Victoria R, Lin, Shih-Ching, Atmar, Robert L, Estes, Mary K, and Larson, Göran
- Subjects
- *
CELL adhesion molecules , *GLYCANS , *GLYCOPROTEINS , *HYDROPHILIC interaction liquid chromatography , *VIRAL gastroenteritis , *MEMBRANE proteins - Abstract
Human noroviruses, globally the main cause of viral gastroenteritis, show strain specific affinity for histo-blood group antigens (HBGA) and can successfully be propagated ex vivo in human intestinal enteroids (HIEs). HIEs established from jejunal stem cells of individuals with different ABO, Lewis and secretor geno- and phenotypes, show varying susceptibility to such infections. Using bottom-up glycoproteomic approaches we have defined and compared the N -linked glycans of glycoproteins of seven jejunal HIEs. Membrane proteins were extracted, trypsin digested, and glycopeptides enriched by hydrophilic interaction liquid chromatography and analyzed by nanoLC-MS/MS. The Byonic software was used for glycopeptide identification followed by hands-on verifications and interpretations. Glycan structures and attachment sites were identified from MS2 spectra obtained by higher-energy collision dissociation through analysis of diagnostic saccharide oxonium ions (B-ions), stepwise glycosidic fragmentation of the glycans (Y-ions), and peptide sequence ions (b- and y-ions). Altogether 694 unique glycopeptides from 93 glycoproteins were identified. The N-glycans encompassed pauci- and oligomannose, hybrid- and complex-type structures. Notably, polyfucosylated HBGA-containing glycopeptides of the four glycoproteins tetraspanin-8, carcinoembryonic antigen-related cell adhesion molecule 5, sucrose-isomaltase and aminopeptidase N were especially prominent and were characterized in detail and related to donor ABO, Lewis and secretor types of each HIE. Virtually no sialylated N-glycans were identified for these glycoproteins suggesting that terminal sialylation was infrequent compared to fucosylation and HBGA biosynthesis. This approach gives unique site-specific information on the structural complexity of N-linked glycans of glycoproteins of human HIEs and provides a platform for future studies on the role of host glycoproteins in gastrointestinal infectious diseases. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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24. Hydroponic Nutrient Solution Temperature Impacts Tulane Virus Persistence over Time.
- Author
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Dhulappanavar, Gayatri R. and Gibson, Kristen E.
- Abstract
Controlled environment agriculture (CEA), or indoor agriculture, encompasses non-traditional farming methods that occur inside climate-controlled structures (e.g., greenhouses, warehouses, high tunnels) allowing for year-round production of fresh produce such as leaf lettuce. However, recent outbreaks and recalls associated with hydroponically grown lettuce contaminated with human pathogens have raised concerns. Few studies exist on the food safety risks during hydroponic cultivation of leaf lettuce; thus, it is important to identify contributing risk factors and potential mitigation strategies to prevent foodborne transmission via hydroponically grown produce. In this study, the concentration of infectious Tulane virus (TV), a human norovirus surrogate, in hydroponic nutrient solution at 15 °C, 25 °C, 30 °C, and 37 °C was determined over a duration of 21 days to mimic the time from seedling to mature lettuce. The mean log PFU reduction for TV was 0.86, 1.80, 2.87, and ≥ 3.77 log
10 at 15 °C, 25 °C, 30 °C, and 37 °C, respectively, at the end of the 21-day period. Similarly, average decimal reduction values (D-values) of TV at 15 °C, 25 °C, 30 °C, and 37 °C were 48.0, 11.3, 8.57, and 7.02 days, respectively. This study aids in the (i) identification of possible food safety risks associated with hydroponic systems specifically related to nutrient solution temperature and (ii) generation of data to perform risk assessments within CEA leaf lettuce operations to inform risk management strategies for the reduction of foodborne outbreaks, fresh produce recalls, and economic losses. [ABSTRACT FROM AUTHOR]- Published
- 2024
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25. In Vitro Differential Virucidal Efficacy of Alcohol-Based Disinfectants Against Human Norovirus and Its Surrogates
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Eri Hiraishi, Keita Ozaki, Moe Yamakami, Tempei Akasaka, and Hirokazu Kimura
- Subjects
human norovirus ,murine norovirus ,feline calicivirus ,inactivation ,alcohol-based disinfectant ,hand sanitizer ,Biology (General) ,QH301-705.5 - Abstract
Human norovirus (HuNoV) is a major causative agent of foodborne illness and causes acute viral gastroenteritis. This study aimed to compare the virucidal efficacies of alcohol-based disinfectants against HuNoV and its surrogates for murine norovirus and feline calicivirus using a cell culture infectivity assay. Additionally, the study evaluated the validity of estimating virucidal efficacy on HuNoV from the results of virucidal efficacy on the surrogate virus. All disinfectants decreased the titer of each virus by >3 log10 and >4 log10 for an exposure duration of 30 s against murine norovirus and feline calicivirus, respectively. However, acidic alcohol-based disinfectants completely inactivated the HuNoV GII.17 strain for 30 or 60 s, whereas an alkaline alcohol-based disinfectant did not inactivate HuNoV GII.17 for 60 s. This finding indicates that the pH of alcohol disinfectants affects their virucidal effects against HuNoV, and acidity has a higher virucidal efficacy against HuNoV than alkalinity. Disinfectants showing virucidal efficacy against surrogates were not effective against HuNoV. Few studies have used cell culture infectivity assays to test the inactivating effects of hand sanitizers on HuNoV and its surrogates. Our study provides useful information for the development of disinfectants that are effective against HuNoV.
- Published
- 2025
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26. Detection of Foodborne Viruses in Dates Using ISO 15216 Methodology
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Philippe Raymond, Roxanne Blain, and Neda Nasheri
- Subjects
human norovirus ,hepatitis A virus ,murine norovirus ,low moisture food ,viral extraction ,Microbiology ,QR1-502 - Abstract
Foodborne viruses such as human norovirus (HuNoV) and hepatitis A virus (HAV) are the major causes of foodborne illnesses worldwide. These viruses have a low infectious dose and are persistent in the environment and food for weeks. Ready-to-eat (RTE) low moisture foods (LMFs) undergo minimal pathogen reduction processes. In recent years, multiple foodborne HAV outbreaks involving hundreds of individuals were associated with the consumption of dates, indicating that they could be important vehicles for foodborne infection. There is no standard method for the extraction and detection of foodborne viruses from dates, but herein we have compared the efficiency of three different protocols based on the ISO 15216 method in the extraction of murine norovirus (MNV) from whole Medjool dates and successfully employed the best performing method in the extraction of HAV, HuNoV GI, and GII and determined the limit of detection (LOD95) of 61, 148, and 184 genomic equivalent (gEq) per 25 g, respectively. Finally, we tested the adopted method on various varieties of dates including pitted ones and reported the detection of HuNoV GI and GII from four naturally contaminated date varieties. This ISO 15216 protocol could be employed for surveillance purposes and outbreak management related to dates.
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- 2025
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27. A Bivalent Human Norovirus Vaccine Induces Homotypic and Heterotypic Neutralizing Antibodies.
- Author
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Atmar, Robert L, Ettayebi, Khalil, Ramani, Sasirekha, Neill, Frederick H, Lindesmith, Lisa, Baric, Ralph S, Brinkman, Amanda, Braun, Ralph, Sherwood, James, and Estes, Mary K
- Subjects
- *
NOROVIRUSES , *VACCINE immunogenicity , *IMMUNOGLOBULINS , *VIRUS-like particles , *VACCINES - Abstract
A GII.2 outbreak in an efficacy study of a bivalent virus-like particle norovirus vaccine, TAK-214, in healthy US adults provided an opportunity to examine GII.4 homotypic vs GII.2 heterotypic responses to vaccination and infection. Three serologic assays—virus-like particle binding, histoblood group antigen blocking, and neutralizing—were performed for each genotype. Results were highly correlated within a genotype but not between genotypes. Although the vaccine provided protection from GII.2-associated disease, little GII.2-specific neutralization occurred after vaccination. Choice of antibody assay can affect assessments of human norovirus vaccine immunogenicity. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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28. Improving the Detection and Understanding of Infectious Human Norovirus in Food and Water Matrices: A Review of Methods and Emerging Models.
- Author
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Chandran, Sahaana and Gibson, Kristen E.
- Subjects
- *
VIRAL gastroenteritis , *NOROVIRUSES , *CELL culture , *HUMAN beings , *BRACHYDANIO - Abstract
Human norovirus (HuNoV) is a leading global cause of viral gastroenteritis, contributing to numerous outbreaks and illnesses annually. However, conventional cell culture systems cannot support the cultivation of infectious HuNoV, making its detection and study in food and water matrices particularly challenging. Recent advancements in HuNoV research, including the emergence of models such as human intestinal enteroids (HIEs) and zebrafish larvae/embryo, have significantly enhanced our understanding of HuNoV pathogenesis. This review provides an overview of current methods employed for HuNoV detection in food and water, along with their associated limitations. Furthermore, it explores the potential applications of the HIE and zebrafish larvae/embryo models in detecting infectious HuNoV within food and water matrices. Finally, this review also highlights the need for further optimization and exploration of these models and detection methods to improve our understanding of HuNoV and its presence in different matrices, ultimately contributing to improved intervention strategies and public health outcomes. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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29. Human norovirus cultivation systems and their use in antiviral research.
- Author
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Tsuyoshi Hayashi, Sakura Kobayashi, Junki Hirano, and Kosuke Murakami
- Subjects
- *
NOROVIRUSES , *FOODBORNE diseases , *AGE groups , *RESEARCH personnel , *GASTROENTERITIS - Abstract
Human norovirus (HuNoV) is a major cause of acute gastroenteritis and foodborne diseases, affecting all age groups. Despite its clinical needs, no approved antiviral therapies are available. Since the discovery of HuNoV in 1972, studies on anti-norovirals, mechanism of HuNoV infection, viral inactivation, etc., have been hampered by the lack of a robust laboratory-based cultivation system for HuNoV. A recent breakthrough in the development of HuNoV cultivation systems has opened opportunities for researchers to investigate HuNoV biology in the context of de novo HuNoV infections. A tissue stem cell-derived human intestinal organoid/enteroid (HIO) culture system is one of those that supports HuNoV replication reproducibly and, to our knowledge, is most widely distributed to laboratories worldwide to study HuNoV and develop therapeutic strategies. This review summarizes recently developed HuNoV cultivation systems, including HIO, and their use in antiviral studies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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30. Human Norovirus Surrogate Is Highly Stable in Berry Smoothies and under In Vitro Simulated Digestion.
- Author
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Hooda, Riya and Esseili, Malak A.
- Subjects
BERRIES ,SMOOTHIES (Beverages) ,NOROVIRUSES ,DIGESTION ,BLUEBERRIES ,STRAWBERRIES - Abstract
Human noroviruses are major causes of foodborne outbreaks linked to berries. The overall goal of this study was to investigate the persistence of a human norovirus surrogate, Tulane virus (TV), in berry smoothies and under simulated digestion through the gastrointestinal track. Two types of smoothies were prepared from blueberries and strawberries. Tulane virus was spiked into each smoothie and incubated either at 37 or 4 °C for 2, 60, and 120 min. Furthermore, the virus-spiked smoothies were subjected to sequential oral (2 min), gastric (10 and 60 min), and intestinal (15 and 120 min) digestion according to the standardized INFOGEST model. Quantification of infectious TV was carried out using the TCID
50 assay. At 4 °C, in both berry smoothies, TV infectivity did not show significant changes throughout the 120 min period. At 37 °C, TV infectivity showed significant reduction (~0.5 log TCID50 /mL) only in blueberry smoothies starting at 60 min. During the oral, gastric, and intestinal digestion phases, the mean log reduction in TV infectivity in blueberry did not exceed ~0.5 log, while infectious TV in strawberry smoothies under all phases was stable. Given the notable stability of infectious viruses in berry smoothies and the gastrointestinal tract, prevention of norovirus contamination of berries is paramount to reduce virus outbreaks linked to berries. [ABSTRACT FROM AUTHOR]- Published
- 2024
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31. Cloning and Expression of Human Norovirus GI.5 and GII.4 P Proteins and Their Binding Characteristics with Histo-Blood Group Antigens-like Substances in Pacific Oysters
- Author
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TONG Lihui, YANG Min, WANG Shanshan, WANG Dajun, WANG Mingli, ZHOU Deqing
- Subjects
human norovirus ,p protein ,pacific oyster ,histo-blood group antigens ,binding characteristics ,Food processing and manufacture ,TP368-456 - Abstract
To clarify the binding characteristics of human norovirus (HuNoV) with histo-blood group antigens (HBGAs)-like substances from Pacific oysters, this study used an Escherichia coli expression system to clone and express HuNoV GI.5 and GII.4 P proteins, and analyzed the binding characteristics of HuNoV P proteins with salivary HBGAs and HBGAs-like substances from Pacific oysters using enzyme-linked immunosorbent assay. The results showed that HuNoV GII.4 exhibited good binding characteristics with blood type A, B, AB, and O salivary HBGAs, while GI.5 HuNoV exhibited weak binding characteristics with blood type B salivary HBGAs but had significant advantage in binding with type O salivary HBGAs. HuNoV GI.5 and GII.4 could be bioaccumulated in the gills, digestive gland, and mantle of Pacific oysters, with the highest bioaccumulation in the digestive gland. Both types of HuNoV were mainly bound to type A and H1 HBGAs-like substances; HuNoV GII.4 had different degrees of binding with type Lea, Leb, Lex, and Ley HBGAs-like substances, while HuNoV GI.5 had weak binding with type Leb HBGAs-like substances but significant advantage in binding with type H1 HBGAs-like substances. In summary, different types of HuNoV have different binding characteristics with HBGAs or HBGAs-like substances. Specifically, HuNoV GII.4 shows broad-spectrum binding characteristics whereas HuNoV GI.5 shows selective binding characteristics.
- Published
- 2024
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32. Exploring magnetic capture to improve the detection of human norovirus in strawberries
- Author
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Yalong Bai, Chunmin Pu, Yujuan Suo, Xufu Zhang, Yang Qu, Bo Feng, Liujuan Huang, Yi Shao, and Yingchun Dai
- Subjects
human norovirus ,detection ,magnetic capture ,RT‐qPCR ,strawberry ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Abstract Human norovirus is a leading cause of foodborne illness worldwide, and its detection in foods remains a challenge due to the difficulty of eluting and enriching trace amounts of viral particles. In this study, we developed porcine gastric mucin–labeled magnetic capture probes and optimized the conditions for their binding with norovirus, elution of viral particles, and RNA isolation based on the previous research. We evaluated the magnetic capture‐based pretreatment method in artificially contaminated strawberry samples and compared it with the conventional polyethylene glycol precipitation–based method using reverse transcriptional‐quantitative PCR (RT‐qPCR). The results revealed that Tris·HCl (pH 9.5) was the optimal buffer for the binding of magnetic probes with viral particles, and RNA recovery rate obtained by heating‐based release was significantly higher than that obtained by a commercial kit, with only active virus being captured. This buffer was similar to the RT‐qPCR buffer, which facilitated the sensitivity of RT‐qPCR. Furthermore, the buffer was an effective solution for eluting viral particles from foods in previous research and was optimized to ensure maximum elution and no inhibitory effect on viral capture. We explored multiple factors or steps to ensure that the sensitivity of our method was three orders of magnitude higher than that of the conventional method. Our findings suggest that magnetic capture‐based detection has great potential for the sensitive detection of human norovirus.
- Published
- 2023
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33. Inactivation of Hepatitis A Virus and Feline Calicivirus on Model Food Contact Surfaces by Ultraviolet Light (UV-C) Systems
- Author
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Breanna Polen, Brahmaiah Pendyala, Ankit Patras, and Doris H. D’Souza
- Subjects
Hepatitis A virus ,human norovirus ,feline calicivirus ,ultraviolet light systems ,inactivation ,food contact surfaces ,Chemical technology ,TP1-1185 - Abstract
Food contact surfaces can harbor and transmit pathogens leading to outbreaks. Decontamination strategies that are user- and environmentally-friendly without toxic by-product formation are needed. Novel UV-C light-emitting diode (LED) technologies are being explored to deliver the required dose to inactivate viruses in food-processing environments. The objective of this study was to compare the effects of 279 nm UV-C LED to 254 nm UV-C against hepatitis A virus (HAV) and feline calicivirus (FCV, a cultivable human norovirus surrogate) on stainless-steel, ceramic, and glass surfaces. Viruses were surface spread on sterile stainless-steel or ceramic coupons (100 μL on 2 × 2 cm2), or glass discs (50 μL on 1 × 1 cm2), air-dried, and UV-C-treated for up to 3.75 min (surface dose = 0–49.2 mJ/cm2 for HAV and 0–24.6 mJ/cm2 for FCV). Each triplicate treatment was assayed in duplicate, and data were statistically analyzed. The D10-values for HAV treated with UV-C at 254 nm on stainless-steel, ceramic, and glass were 9.48 ± 0.34, 14.53 ± 2.52, and 6.91 ± 1.93 mJ/cm2, while with UV-C LED at 279 nm were 19.53 ± 2.45, 26.05 ± 0.60, and 8.77 ± 2.08 mJ/cm2, respectively. The D10-values for FCV treated with UV-C at 254 nm on stainless-steel, ceramic, and glass were 3.65 ± 0.06, 6.25 ± 1.90, and 4.69 ± 0.03 mJ/cm2, while with UV-C LED at 279 nm were 7.097 ± 2.11, 8.31 ± 2.12, and 7.88 ± 0.86 mJ/cm2, respectively. Higher 279 nm UV-C doses were needed to inactivate HAV and FCV compared to 254 nm UV-C on the tested surfaces. Novel UV-C LED systems using appropriate doses show promise to inactivate foodborne viruses on food contact surfaces.
- Published
- 2024
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34. A DNA vaccine against GII.4 human norovirus VP1 induces blocking antibody production and T cell responses.
- Author
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Kim, Na-Eun, Kim, Mun-Jin, Park, Bum Ju, Kwon, Jung Won, Lee, Jae Myun, Park, Jung-Hwan, and Song, Yoon-Jae
- Subjects
- *
DNA vaccines , *ANTIBODY formation , *T cells , *NOROVIRUSES , *CYTOSKELETAL proteins , *GASTROENTERITIS , *IMMUNOSENESCENCE - Abstract
Human noroviruses (HuNoVs) are highly contagious and a leading cause of epidemics of acute gastroenteritis worldwide. Among the various HuNoV genotypes, GII.4 is the most prevalent cause of outbreaks. However, no vaccines have been approved for HuNoVs to date. DNA vaccines are proposed to serve as an ideal platform against HuNoV since they can be easily produced and customized to express target proteins. In this study, we constructed a CMV/R vector expressing a major structural protein, VP1, of GII.4 HuNoV (CMV/R-GII.4 HuNoV VP1). Transfection of CMV/R-GII.4 HuNoV VP1 into human embryonic kidney 293T (HEK293T) cells resulted in successful expression of VP1 proteins in vitro. Intramuscular or intradermal immunization of mice with the CMV/R-GII.4 HuNoV VP1 construct elicited the production of blocking antibodies and activation of T cell responses against GII.4 HuNoV VP1. Our collective data support the utility of CMV/R-GII.4 HuNoV VP1 as a promising DNA vaccine candidate against GII.4 HuNoV. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
35. Heat inactivation of aqueous viable norovirus and MS2 bacteriophage.
- Author
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Shaffer, Marlee, Huynh, Kimberly, Costantini, Verónica, Vinjé, Jan, and Bibby, Kyle
- Subjects
- *
NOROVIRUSES , *BACTERIOPHAGES , *HEAT treatment - Abstract
Aims This study aimed to compare the heat inactivation kinetics of viable human norovirus with the surrogate, MS2 bacteriophage as well as assess the decay of the RNA signal. Methods and results Human intestinal enteroids were used to analyze the heat inactivation kinetics of viable human norovirus compared to the surrogate MS2 bacteriophage, which was cultured using a plaque assay. Norovirus decay rates were 0.22 min−1, 0.68 min−1, and 1.11 min−1 for 50°C, 60°C, and 70°C, respectively, and MS2 bacteriophage decay rates were 0.0065 min−1, 0.045 min−1, and 0.16 min−1 for 50°C, 60°C, and 70°C, respectively. Norovirus had significantly higher decay rates than MS2 bacteriophage at all tested temperatures (P = .002–.007). No decrease of RNA titers as measured by reverse transcription-PCR for both human norovirus and MS2 bacteriophage over time was observed, indicating molecular methods do not accurately depict viable human norovirus after heat inactivation and treatment efficiency is underestimated. Conclusions Overall, our data demonstrate that MS2 bacteriophage is a conservative surrogate to measure heat inactivation and potentially overestimates the infectious risk of norovirus. Furthermore, this study corroborates that measuring viral RNA titers, as evaluated by PCR methods, does not correlate with the persistence of viable norovirus under heat inactivation. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
36. Replication of Human Norovirus in Human Intestinal Enteroids Is Affected by Fecal Sample Processing.
- Author
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Narwankar, Revati and Esseili, Malak A.
- Subjects
- *
NOROVIRUSES , *SAMPLING (Process) , *INTESTINES , *CENTRIFUGATION , *VIRAL replication , *HUMAN beings , *RNA - Abstract
Human intestinal enteroids (HIEs) culture is an emerging model for assessing the infectivity of human noroviruses (HuNoVs). The model is based on detecting an increase in HuNoV RNA post-infection of HIEs. HuNoV fecal samples used for HIE infection are traditionally processed by serial filtration. Recently, processing HuNoV fecal samples by serial centrifugation was shown to retain vesicles containing HuNoV. The objective of this study was to investigate whether serially centrifuged fecal samples, RNA extraction kit (QIAamp versus MagMaX) and HIE age (newer versus older) affect HuNoV RNA fold increase in HIE. HuNoV GII.1, GII.4 and GII.6 fecal samples were prepared by serial centrifugation and filtration and the viral RNA in HIE was quantified at 1 and 72 h post-infection (hpi) following RNA extraction and RT-qPCR. The serially filtered GII.1, GII.4 and GII.6 showed successful replication in HIE, resulting in mean log increases of 2.2, 2 and 1.2, respectively, at 72 vs. 1 hpi. In contrast, only serially centrifuged GII.1 showed consistently successful replication. However, using newer HIE passages and the MagMAX kit resulted in mean log fold increases for serially centrifuged GII.1, GII.4 and GII.6 (1.6, 2.3 and 1.8 log, respectively) that were similar to serially filtered samples. Therefore, HuNoV fecal sample processing and HIE age can affect virus replication in the HIE model. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
37. GI.5 和GII.4 诺如病毒P蛋白的克隆表达及与 长牡蛎类 HBGAs 的结合特性.
- Author
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佟利惠, 杨敏, 王珊珊, 王大军, 王明丽, and 周德庆
- Subjects
PACIFIC oysters ,NOROVIRUSES ,ANTIGENS ,PROTEINS ,HUMAN beings - Abstract
Copyright of Shipin Kexue/ Food Science is the property of Food Science Editorial Department and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
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38. The 2.6 Å Structure of a Tulane Virus Variant with Minor Mutations Leading to Receptor Change.
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Sun, Chen, Huang, Pengwei, Xu, Xueyong, Vago, Frank S., Li, Kunpeng, Klose, Thomas, Jiang, Xi Jason, and Jiang, Wen
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ENZYME-linked immunosorbent assay , *FOODBORNE diseases , *TISSUE culture , *RHESUS monkeys , *CELL receptors , *CELL culture - Abstract
Human noroviruses (HuNoVs) are a major cause of acute gastroenteritis, contributing significantly to annual foodborne illness cases. However, studying these viruses has been challenging due to limitations in tissue culture techniques for over four decades. Tulane virus (TV) has emerged as a crucial surrogate for HuNoVs due to its close resemblance in amino acid composition and the availability of a robust cell culture system. Initially isolated from rhesus macaques in 2008, TV represents a novel Calicivirus belonging to the Recovirus genus. Its significance lies in sharing the same host cell receptor, histo-blood group antigen (HBGA), as HuNoVs. In this study, we introduce, through cryo-electron microscopy (cryo-EM), the structure of a specific TV variant (the 9-6-17 TV) that has notably lost its ability to bind to its receptor, B-type HBGA—a finding confirmed using an enzyme-linked immunosorbent assay (ELISA). These results offer a profound insight into the genetic modifications occurring in TV that are necessary for adaptation to cell culture environments. This research significantly contributes to advancing our understanding of the genetic changes that are pivotal to successful adaptation, shedding light on fundamental aspects of Calicivirus evolution. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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39. Use of Human Intestinal Enteroids for Recovery of Infectious Human Norovirus from Berries and Lettuce.
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Wales, Samantha Q., Kulka, Michael, Keinard, Brianna, Ngo, Diana, and Papafragkou, Efstathia
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BERRIES ,NOROVIRUSES ,VIRAL gastroenteritis ,LETTUCE ,FOODBORNE diseases ,INTESTINES ,ENVIRONMENTAL sampling - Abstract
Norovirus (NoV) is the leading cause of viral foodborne gastroenteritis globally. Currently, the gold standard for detecting NoV in clinical, food, and environmental samples is via molecular-based methods, primarily RT-PCR. Nevertheless, there is a great need for confirmatory assays that can determine the infectivity of viral particles recovered from contaminated matrices. The use of the human intestinal enteroids system (HIEs) has allowed for the expansion of norovirus replication, although it still suffers from limitations of strain preferences and the requirement of high titer stocks for infection. In this study, we wanted to explore the feasibility of using the HIEs to support the replication of NoV that had been recovered from representative food matrices that have been associated with foodborne illness. We first confirmed that HIEs can support the replication of several strains of NoV as measured by RT-qPCR. We subsequently chose two of those strains that reproducibly replicated, GII.4 and GII.6, to evaluate in a TCID
50 assay and for future experiments. Infectious NoV could be recovered and quantified in the HIEs from lettuce, frozen raspberries, or frozen strawberries seeded with high titers of either of these strains. While many experimental challenges still remain to be overcome, the results of this study represent an important step toward the detection of infectious norovirus from representative produce items. [ABSTRACT FROM AUTHOR]- Published
- 2023
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40. Chimeric virus-like particles of human norovirus constructed by structure-guided epitope grafting elicit cross-reactive immunity against both GI.1 and GII.4 genotypes.
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Ya Nan Hou, Yu Qin Jin, Xue Feng Zhang, Fang Tang, Jun Wei Hou, Zhao Ming Liu, Zi Bo Han, Hao Zhang, Li Fang Du, Shuai Shao, Ji Guo Su, Yu Liang, Jing Zhang, and Qi Ming Li
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VIRUS-like particles , *CHIMERIC proteins , *GENOTYPES , *NOROVIRUSES , *ENZYME-linked immunosorbent assay , *GENETIC variation - Abstract
Human norovirus (HuNoV) is the main cause of acute non-bacterial gastroenteritis worldwide. There is no vaccine currently available to prevent HuNoV infection. HuNoV is a highly mutated virus, and its genetic diversity and the lack of cross-protection between different genotypes hinder the broadly protective vaccine development. Among various genotypes, GI.1 is the prototype strain, and GII.4 currently predominates the prevalence of HuNoV. In this work, guided by the structural alignment of GI.1 and GII.4 HuNoV capsid proteins, several chimeric virus-like particles (VLPs) were designed to achieve cross-immunity against these two HuNoV genotypes. The neutralizing epitopes of HuNoV have been identified to be mainly located at the loop regions of VP1 protein exposed on the HuNoV surface. In this study, the exposed loops of GII.4 VP1 protein were grafted into the scaffold of GI.1 genotype to produce the chimeric VLPs. The designed chimeric VLPs were recombinantly expressed by the Hansenula polymorpha expression system developed by our laboratory. Mice were immunized with the chimeric VLPs plus aluminum adjuvant, and then the antibody responses were detected by using the enzyme-linked immunosorbent assay and the histo-blood group antigen-VLP interaction blocking assay. The experimental results show that two of the designed chimeric VLPs induced cross-reactive IgG and cross-blocking antibodies against both the parental GI.1 and GII.4 genotypes of HuNoV. The results also imply that the transplant site design is important to maintain the immunogenicity of foreign epitopes on the scaffold carrier. Our studies may provide a valuable strategy for the development of cross-reactive HuNoV vaccines. IMPORTANCE Human norovirus (HuNoV) is highly infectious and can result in severe illnesses in the elderly and children. So far, there is no effective antiviral drug to treat HuNoV infection, and thus, the development of HuNoV vaccines is urgent. However, NoV evolves rapidly, and currently, at least 10 genogroups with numerous genotypes have been found. The genetic diversity of NoV and the lack of cross-protection between different genotypes pose challenges to the development of broadly protective vaccines. In this study, guided by structural alignment between GI.1 and GII.4 HuNoV VP1 proteins, several chimeric-type virus-like particles (VLPs) were designed through surface-exposed loop grafting. Mouse immunization studies show that two of the designed chimeric VLPs induced cross-immunity against both GI.1 and GII.4 HuNoVs. To our knowledge, this is the first designed chimeric VLPs that can induce cross-immune activities across different genogroups of HuNoV, which provides valuable strategies for the development of cross-reactive HuNoV vaccines. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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41. Inhibitory effect of Ephedra herba on human norovirus infection in human intestinal organoids.
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Hayashi, Tsuyoshi, Murakami, Kosuke, Ando, Hirokazu, Ueno, Sayuri, Kobayashi, Sakura, Muramatsu, Masamichi, Tanikawa, Takashi, and Kitamura, Masashi
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NOROVIRUS diseases , *EPHEDRA , *INTESTINAL infections , *FOODBORNE diseases , *ORGANOIDS - Abstract
Human norovirus (HuNoV) is a major cause of acute gastroenteritis and foodborne diseases worldwide with public health concern, yet no antiviral therapies have been developed. In this study, we aimed to screen crude drugs, which are components of Japanese traditional medicine, "Kampo" to see their effects on HuNoV infection using a reproducible HuNoV cultivation system, stem-cell derived human intestinal organoids/enteroids (HIOs). Among the 22 crude drugs tested, Ephedra herba significantly inhibited HuNoV infection in HIOs. A time-of-drug addition experiment suggested that this crude drug more preferentially targets post-entry step than entry step for the inhibition. To our knowledge, this is the first anti-HuNoV inhibitor screen targeting crude drugs, and Ephedra herba was identified as a novel inhibitor candidate that merits further study. • 22 crude drugs were tested for their ability to inhibit HuNoV infection in HIOs. • Ephedra herba was identified as a novel anti-HuNoV inhibitor candidate. • Ephedra herba preferentially targets post-entry step for the inhibition. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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42. Identification of host cellular factors that regulate human norovirus replication
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Arthur, Sabastine and Goodfellow, Ian
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616.9 ,Interferon Lamda ,Hsp90 ,Human norovirus ,Cyclooxygenase ,Replicons - Abstract
The human norovirus (HuNoV) is one of the most predominant causes of gastroenteritis, yet no suitable therapeutics are available for its control. Currently, our knowledge of the precise cellular processes that control its replication is limited. In this study, we used the virus replicon system in human gastric tumour (HGT) cells to determine host factors involved in human norovirus replication, and to analyse the adaptive changes required to support its long-term replication in cell culture. First, using a genome-wide microarray screen, we found that the expression of the receptor for type III interferons is suppressed by epigenetic modification of its promoter, and cells lacking the receptor were more permissive for HuNoV replication. Secondly, the role of the heat shock protein 90 (Hsp90) on HuNoV replication was examined. While this molecular chaperone was previously reported to have a proviral effect on murine norovirus infection, in this current study, we observed that inhibition of the protein with small molecule inhibitors resulted in the degradation of key cellular proteins in the innate immune pathway, with a corresponding increase in virus replication in replicon- harbouring cells. Finally, we showed that human norovirus replication requires the activity of COX-1 so that the inhibition of the enzyme with a small molecule inhibitor (SC-560) reduced virus replication. Prostaglandin E2 supplementation abrogated the effect of SC560 on HuNoV replication. We also observed that a prolonged treatment of the replicon-harbouring cells with SC-560 resulted in the generation of a single amino acid mutation, T229A, in the NS1/2 of the replicon. Introduction of this mutation in the wildtype HuNoV replicon conferred resistance to the inhibitory effect from COX- 1 inhibition by SC-560. Altogether, this work provides new insights into the key dynamics of virus-host interactions that determine the outcome of HuNoV infections, and potentially opens novel avenues for their therapeutic control.
- Published
- 2020
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43. Intestinal colonization with Escherichia fergusonii enhances infectivity of GII.12 human norovirus in gnotobiotic pigs
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Kwonil Jung, Qiuhong Wang, Kyeong-Ok Chang, and Linda J. Saif
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Gut microbiota ,Human norovirus ,Histo-blood group antigen ,Virus ,Pig ,Microbiology ,QR1-502 ,Infectious and parasitic diseases ,RC109-216 - Abstract
The role of gut microbiota [especially, histo-blood group antigen (HBGA)-expressing bacteria] in influencing human norovirus (HuNoV) infections is unclear. We investigated if infectivity of GII.12 HuNoV in gnotobiotic (Gn) pigs is altered by intestinal colonization with Escherichia fergusonii known to express HBGA A and H on their cell surface. Fifteen piglets were randomly grouped: (1) E. fergusonii + HuNoV (n = 6), (2) HuNoV alone (n = 6), and (3) Mock-inoculated (n = 3). Pigs (8-11-day-old) were inoculated orally with GII.12 HuNoV strain HS206 (9.5 log10 genomic equivalents/pig) or mock. For 2 days prior to viral inoculation, pigs were inoculated orally with E. fergusonii [8 log10 colony forming units/pig/day]. Daily fecal consistency, fecal viral RNA or E. fergusonii shedding, and histopathology (at euthanasia) were evaluated. Unlike the reduced infectivity of GII.4 HuNoV observed previously in Gn pigs colonized with Enterobacter cloacae known to express HBGA A, B, and H on the surface, E. fergusonii + HuNoV pigs exhibited significantly higher cumulative fecal HuNoV RNA shedding at PIDs 6–14 and 1–21 compared with HuNoV alone pigs. Mean days of fecal HuNoV RNA shedding were also significantly greater in E. fergusonii + HuNoV pigs (11.8 ± 1.6 days) compared with HuNoV alone pigs (7.0 ± 1.0 days). By immunofluorescent staining, HuNoV antigen-positive bacteria were detected on the surface of the intestinal epithelium, possibly enhancing attachment of HuNoV to enterocytes, suggesting a potential mechanism by which intestinal colonization with E. fergusonii promoted infectivity of GII.12 HuNoV in Gn pigs.
- Published
- 2023
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44. Trends on Human Norovirus Virus-like Particles (HuNoV-VLPs) and Strategies for the Construction of Infectious Viral Clones toward In Vitro Replication.
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Sion, Emilly, Ab-Rahim, Sharaniza, and Muhamad, Mudiana
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VIRUS-like particles , *NOROVIRUS diseases , *NOROVIRUSES , *VIRAL genes , *VIRAL proteins , *PLANT viruses - Abstract
Most acute gastroenteritis (AGE) outbreaks and sporadic cases in developing countries are attributable to infection by human norovirus (HuNoV), the enteric virus mainly transmitted via fecal-contaminated water. However, it has been challenging to study HuNoV due to the lack of suitable systems to cultivate and replicate the virus, hindering the development of treatments and vaccines. Researchers have been using virus-like particles (VLPs) and infectious viral clones to overcome this challenge as alternatives to fresh virus isolates in various in vitro and ex vivo models. VLPs are multiprotein structures that mimic the wild-type virus but cannot replicate in host cells due to the lack of genetic materials for replication, limiting downstream analysis of the virus life cycle and pathogenesis. The development of in vitro cloning systems has shown promise for HuNoV replication studies. This review discusses the approaches for constructing HuNoV-VLPs and infectious viral clones, the techniques involved, and the challenges faced. It also highlights the relationship between viral genes and their protein products and provides a perspective on technical considerations for producing efficient HuNoV-VLPs and infectious viral clones, which could substitute for native human noroviruses in future studies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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45. Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase (RdRp) Region and VP1 Gene in Human Norovirus Genotypes GII.P6-GII.6 and GII.P7-GII.6.
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Takahashi, Tomoko, Kimura, Ryusuke, Shirai, Tatsuya, Sada, Mitsuru, Sugai, Toshiyuki, Murakami, Kosuke, Harada, Kazuhiko, Ito, Kazuto, Matsushima, Yuki, Mizukoshi, Fuminori, Okayama, Kaori, Hayashi, Yuriko, Kondo, Mayumi, Kageyama, Tsutomu, Suzuki, Yoshiyuki, Ishii, Haruyuki, Ryo, Akihide, Katayama, Kazuhiko, Fujita, Kiyotaka, and Kimura, Hirokazu
- Subjects
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RNA replicase , *RNA analysis , *HUMAN genes , *GENOTYPES , *NOROVIRUSES - Abstract
To understand the evolution of GII.P6-GII.6 and GII.P7-GII.6 strains, the prevalent human norovirus genotypes, we analysed both the RdRp region and VP1 gene in globally collected strains using authentic bioinformatics technologies. A common ancestor of the P6- and P7-type RdRp region emerged approximately 50 years ago and a common ancestor of the P6- and P7-type VP1 gene emerged approximately 110 years ago. Subsequently, the RdRp region and VP1 gene evolved. Moreover, the evolutionary rates were significantly faster for the P6-type RdRp region and VP1 gene than for the P7-type RdRp region and VP1 genes. Large genetic divergence was observed in the P7-type RdRp region and VP1 gene compared with the P6-type RdRp region and VP1 gene. The phylodynamics of the RdRp region and VP1 gene fluctuated after the year 2000. Positive selection sites in VP1 proteins were located in the antigenicity-related protruding 2 domain, and these sites overlapped with conformational epitopes. These results suggest that the GII.6 VP1 gene and VP1 proteins evolved uniquely due to recombination between the P6- and P7-type RdRp regions in the HuNoV GII.P6-GII.6 and GII.P7-GII.6 virus strains. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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46. Innovative nonthermal technologies for inactivation of emerging foodborne viruses.
- Author
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Han, Sangha, Hyun, Seok‐Woo, Son, Jeong Won, Song, Min Su, Lim, Dong Jae, Choi, Changsun, Park, Si Hong, and Ha, Sang‐Do
- Subjects
VIRUS inactivation ,FOOD storage ,FOOD production ,GASTROENTERITIS ,HEAT treatment ,PLANT viruses - Abstract
Various foodborne viruses have been associated with human health during the last decade, causing gastroenteritis and a huge economic burden worldwide. Furthermore, the emergence of new variants of infectious viruses is growing continuously. Inactivation of foodborne viruses in the food industry is a formidable task because although viruses cannot grow in foods, they can survive in the food matrix during food processing and storage environments. Conventional inactivation methods pose various drawbacks, necessitating more effective and environmentally friendly techniques for controlling foodborne viruses during food production and processing. Various inactivation approaches for controlling foodborne viruses have been attempted in the food industry. However, some traditionally used techniques, such as disinfectant‐based or heat treatment, are not always efficient. Nonthermal techniques are considered a new platform for effective and safe treatment to inactivate foodborne viruses. This review focuses on foodborne viruses commonly associated with human gastroenteritis, including newly emerged viruses, such as sapovirus and Aichi virus. It also investigates the use of chemical and nonthermal physical treatments as effective technologies to inactivate foodborne viruses. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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47. Long‐time scale simulations of virus‐like particles from three human‐norovirus strains.
- Author
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Lipska, Agnieszka G., Sieradzan, Adam K., Czaplewski, Cezary, Lipińska, Andrea D., Ocetkiewicz, Krzysztof M., Proficz, Jerzy, Czarnul, Paweł, Krawczyk, Henryk, and Liwo, Adam
- Subjects
- *
VIRUS-like particles , *NOROVIRUSES , *MOLECULAR dynamics , *SURFACE strains , *GASTROENTERITIS - Abstract
The dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long‐time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse‐grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that sits in the VLP shell) and the P2 subdomain (that protrudes outside) of the major VP1 protein, this resulting in a correlated wagging motion of the P2 subdomains with respect to the VLP surface. The fluctuations of the P2 subdomain were found to be more pronounced and the P2 domain made a greater angle with the normal to the VLP surface for the GII.2 strain, which could explain the inability of this strain to bind the histo‐blood group antigens (HBGAs). [ABSTRACT FROM AUTHOR]
- Published
- 2023
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48. Human Norovirus Surrogate Is Highly Stable in Berry Smoothies and under In Vitro Simulated Digestion
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Riya Hooda and Malak A. Esseili
- Subjects
human norovirus ,Tulane virus ,foodborne outbreaks ,strawberry ,blueberry ,in vitro digestion ,Chemical technology ,TP1-1185 - Abstract
Human noroviruses are major causes of foodborne outbreaks linked to berries. The overall goal of this study was to investigate the persistence of a human norovirus surrogate, Tulane virus (TV), in berry smoothies and under simulated digestion through the gastrointestinal track. Two types of smoothies were prepared from blueberries and strawberries. Tulane virus was spiked into each smoothie and incubated either at 37 or 4 °C for 2, 60, and 120 min. Furthermore, the virus-spiked smoothies were subjected to sequential oral (2 min), gastric (10 and 60 min), and intestinal (15 and 120 min) digestion according to the standardized INFOGEST model. Quantification of infectious TV was carried out using the TCID50 assay. At 4 °C, in both berry smoothies, TV infectivity did not show significant changes throughout the 120 min period. At 37 °C, TV infectivity showed significant reduction (~0.5 log TCID50/mL) only in blueberry smoothies starting at 60 min. During the oral, gastric, and intestinal digestion phases, the mean log reduction in TV infectivity in blueberry did not exceed ~0.5 log, while infectious TV in strawberry smoothies under all phases was stable. Given the notable stability of infectious viruses in berry smoothies and the gastrointestinal tract, prevention of norovirus contamination of berries is paramount to reduce virus outbreaks linked to berries.
- Published
- 2024
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49. Ultrasensitive and visual detection of human norovirus genotype GII.4 or GII.17 using CRISPR-Cas12a assay
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Weidong Qian, Jie Huang, Ting Wang, Cheng Fan, Jie Kang, Qian Zhang, Yongdong Li, and Si Chen
- Subjects
CRISPR-Cas12a ,RT-RAA ,Diagnostics ,Human norovirus ,GII.4 or GII.17 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Integrating CRISPR-Cas12a sensors with isothermal signal amplification can be exploited to develop low-cost, disposable, and ultrasensitive assays for the diagnostics of human pathogens. Methods RT-RAA-Cas12a-mediated real-time or end-point fluorescent and lateral flow strip (LFS) assays for direct detection of norovirus (NOV) genotype GII.4 or GII.17 were explored. Results The results showed that our RT-RAA-Cas12a-mediated fluorescent and LFS assay could detect NOV GII.4 or GII.17 by targeting the viral protein 1 gene. Our RT-RAA-Cas12a-mediated fluorescent and LFS assay can specifically detect NOV GII.4 or GII.17 with no cross-reactivity for other related viruses. The low limit of detection could reach 0.1 copies/μL within approximately 30–40 min, and the results were visualized using an ultraviolet light illuminator or on a LFS without complex equipment. In addition, our RT-RAA-Cas12a-mediated fluorescent and LFS assay provided a visual and faster alternative to real-time RT-PCR assay, with 95.7% and 94.3% positive predictive agreement and 100% negative predictive agreement. Conclusions Together, our RT-RAA-Cas12a-mediated approach would have a great potential for point-of-care diagnostics of NOV GII.4 and/or GII.17 in resource-limited settings.
- Published
- 2022
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50. Evaluation of a novel chlorine dioxide-based packaging technology to reduce human enteric virus contamination on refrigerated tomatoes and blueberries
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Rebecca M. Goulter, Jason W. Frye, William L. Kerr, Angela Richard, Michael Johnston, and Lee-Ann Jaykus
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human norovirus ,hepatitis a virus ,food safety ,packaging ,active packaging ,fresh produce ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
IntroductionChlorine dioxide (ClO2) is a promising antimicrobial with various food applications, one of those being inclusion in packaging. The purpose of this study was to evaluate a novel ClO2-based antimicrobial packaging system (InvisiShield™) for its efficacy against human norovirus (hNoV) and hepatitis A virus (HAV) in refrigerated fresh produce.MethodsGrape tomatoes or blueberries were placed in polypropylene trays and selectively inoculated with 6.0 log10 hNoV Genome Equivalent Copies (GEC; 20% stool suspension) or 6.2 log10 HAV GEC (cell culture lysate). Trays were heat sealed with a three-phase polymer film consisting of a base, channeling agent, and the ClO2 active (treatment); or control (no active) film and stored at 7°C for 24, 48 h, and 7 days. At each timepoint, the product was collected and processed for virus concentration using the sequential steps of elution and polyethylene glycol precipitation. Viruses in extracts were quantified using RNase-RT-qPCR.Results and discussionLog10 reductions (LR) in hNoV GEC for tomatoes were 2.2 ± 1.3, 2.9 ± 0.7, and 3.6 ± 0.3, after 24, 48 h and 7 days, respectively. For blueberries, hNoV LR were 1.4 ± 0.7, 1.7 ± 0.5, and 2.7 ± 0.2 GEC, respectively. Hepatitis A virus GEC LR were 0.4 ± 0.2, 1.0 ± 0.1, and 2.1 ± 0.7 for tomatoes, and 0.1 ± 0.2, 1.2 ± 0.4, and 3.2 ± 0.2 for blueberries, after 24, 48 h and 7 days, respectively. Position of the fruit in the tray did not affect inactivation (p > 0.05). Sensory analysis on the treated tomato products revealed no statistically significant difference in appearance, flavor and texture attributes compared to the control. This novel ClO2-based antimicrobial packaging system effectively reduced concentrations of hNoV and HAV, as evaluated using reduction in GEC as proxy for infectivity, on grape tomatoes and blueberries after one day, with efficacy improving over 7 days of refrigerated storage. This technology shows promise as an antiviral treatment as applied to refrigerated fresh produce items.
- Published
- 2023
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