13 results on '"Inganäs E"'
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2. Corynebacterium genitalium sp. nov., nom. rev. and Corynebacterium pseudogenitalium sp. nov., nom. rev., two old species of the genus Corynebacterium described from clinical and environmental samples.
- Author
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Jaén-Luchoro D, Al-Shaer S, Piñeiro-Iglesias B, Gonzales-Siles L, Cardew S, Jensie-Markopolous S, Ohlén M, Inganäs E, Neumann-Schaal M, Wolf J, and Moore ERB
- Subjects
- Phylogeny, DNA, Bacterial genetics, RNA, Ribosomal, 16S genetics, Corynebacterium genetics
- Abstract
Two Corynebacterium species were proposed decades ago, isolated from clinical samples and divided into biovars: "Corynebacterium genitalium" biovars I-V and "Corynebacterium pseudogenitalium" biovars C1-C6. Several biovars have been re-classified as new species. Nevertheless, biovar I and C5, together with their respective specific epithets "Corynebacterium genitalium" and "Corynebacterium pseudogenitalium", remained not validly published after more than 40 years. Several more strains, temptatively classified as "C. genitalium" biovar I and "Corynebacterium pseudogenitalium" C5, have been isolated from clinical and environmental samples. Both species presented Gram-positive, non-spore forming rod-shaped cells, able to grow aerobically with CO
2 . Core-genome analysis identified "C. genitalium" to be most closely related to Corynebacterium tuscaniense, Corynebacterium urinipleomorphum, Corynebacterium aquatimens and C appendicis, and Corynebacterium gottingense as the most closely related species to "C. pseudogenitalium". Comprehensive genomic, genotypic, phenotypic analyses, as well as chemotaxonomic, support the proposal for "C. genitalium" and "C. pseudogenitalium" as distinct species within the genus Corynebacterium. The designated type strains of the two species are Furness 392-1T = ATCC 33030T = CCUG 38989T = CCM 9178T = DSM 113155T for C. genitalium sp. nov., nom. rev., and Furness 162-C2T = ATCC 33039T = CCUG 27540T = CCM 9177T = DSM 113154T for C. pseudogenitalium sp. nov., nom. rev., Competing Interests: Declaration of competing interest The authors declare that there are no conflicts of interest., (Copyright © 2022 The Author(s). Published by Elsevier Masson SAS.. All rights reserved.)- Published
- 2023
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3. Corynebacterium sanguinis sp. nov., a clinical and environmental associated corynebacterium.
- Author
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Jaén-Luchoro D, Gonzales-Siles L, Karlsson R, Svensson-Stadler L, Molin K, Cardew S, Jensie-Markopolous S, Ohlén M, Inganäs E, Skovbjerg S, Tindall BJ, and Moore ERB
- Subjects
- Bacterial Proteins genetics, Base Composition, Corynebacterium chemistry, Corynebacterium cytology, Corynebacterium physiology, DNA, Bacterial genetics, Fatty Acids chemistry, Genome Size, Genome, Bacterial genetics, Glycolipids chemistry, Humans, Nucleic Acid Hybridization, Phospholipids chemistry, Phylogeny, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Species Specificity, Vitamin K 2 chemistry, Corynebacterium classification, Corynebacterium Infections microbiology, Environmental Microbiology
- Abstract
Clinical and environmental-associated strains (n=17), genotypically related to Corynebacterium spp., yet distinct from any species of the genus Corynebacterium with validly published names, have been isolated during the last 20 years and tentatively identified as Corynebacterium sanguinis, although the combination, "Corynebacterium sanguinis" was never validly published. The comprehensive genotypic and phenotypic characterisations and genomic analyses in this study support the proposal for recognizing the species within the genus Corynebacterium, for which the name, Corynebacterium sanguinis sp. nov., is reaffirmed and proposed. Strains of Corynebacterium sanguinis are Gram-positive, non-motile, non-spore-forming, short, pleomorphic and coryneform bacilli, growing aerobically, with CO
2 . They contain mycolic acids, major respiratory menaquinones, MK-8 (II-H2 ) and MK-9 (II-H2 ), and polar lipids, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, phosphoglycolipid, glycolipids and a novel lipid that remains to be characterized and identified. Strains of Corynebacterium sanguinis are genotypically most similar to Corynebacterium lipophiliflavum, with 16S rRNA gene sequence similarities of 98.3% and rpoB sequence similarities of 94.9-95.2%. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) analysis were able to clearly differentiate Corynebacterium sanguinis from the most closely related species. The genome size of Corynebacterium sanguinis is 2.28-2.37Mbp with 65.1-65.5mol% G+C content. A total of 2202-2318 ORFs were predicted, comprising 2141-2251 protein-encoding genes. The type strain is CCUG 58655T (=CCM 8873T =NCTC 14287T )., (Copyright © 2019 The Authors. Published by Elsevier GmbH.. All rights reserved.)- Published
- 2020
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4. Corynebacterium alimapuense sp. nov., an obligate marine actinomycete isolated from sediment of Valparaíso bay, Chile.
- Author
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Claverías F, Gonzales-Siles L, Salvà-Serra F, Inganäs E, Molin K, Cumsille A, Undabarrena A, Couve E, Moore ERB, Tindall BJ, Gomila M, and Camara B
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- Bacterial Typing Techniques, Base Composition, Bays, Chile, Corynebacterium isolation & purification, DNA, Bacterial genetics, Fatty Acids chemistry, Glycolipids chemistry, Nucleic Acid Hybridization, Phospholipids chemistry, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Vitamin K 2 analogs & derivatives, Vitamin K 2 chemistry, Corynebacterium classification, Geologic Sediments microbiology, Phylogeny, Seawater microbiology
- Abstract
A novel Gram-positive, non-motile, non-spore-forming and aerobic bacterium, designated strain VA37-3
T , was isolated from a marine sediment sample collected at 19.2 m water depth from Valparaíso bay, Chile. Strain VA37-3T exhibits 97.6 % 16S rRNA gene sequence similarity to Corynebacterium marinum D7015T , 96.4 % to Corynebacterium humireducens MFC-5T and 96 % to Corynebacterium testudinoris M935/96/4T ; and a rpoB gene sequence similarity of 85.1 % to Corynebacterium pollutisoli VMS11T , both analyses suggesting that strain VA37-3T represents a novel species of Corynebacterium. Physiological testing indicated that strain VA37-3T requires artificial sea water or sodium-supplemented media for growth, representing the first obligate marine actinomycete of the genus Corynebacterium. The genome of the proposed new species, along with the type strains of its most closely related species were sequenced and characterized. In silico genome-based similarity analyses revealed an ANIb of 72.8 % (C. marinum D7015T ), ANIm of 85.0 % (Corynebacterium mustelae DSM 45274T ), tetra of 0.90 (Corynebacterium callunae DSM 20147T ) and ggdc of 24.7 % (Corynebacterium kutscheri DSM 20755T ) when compared with the closest related strains. The genomic DNA G+C content of strain VA37-3T was 57.0 %. Chemotaxonomic assessment of strain VN6-2T showed the major fatty acids were C18 : 1ω9c and C16 : 0. Menaquinones predominantly consisted of MK-8(II-H2). Polar lipids consisted of diphosphatidylglycerol, glycolipids, phosphatidylglycerol, phosphoglycolipid and phosphatidylinositol. Mycolic acids also were present. Overall, the results from phylogenetic, phenotypic and genomic analyses confirmed that strain VA37-3T represents a novel species of the genus Corynebacterium, for which the name Corynebacterium alimapuense sp. nov. is proposed, with VA37-3T as the type strain (=CCUG 69366T =NCIMB 15118T ).- Published
- 2019
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5. Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.
- Author
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Vandamme PA, Peeters C, Inganäs E, Cnockaert M, Houf K, Spilker T, Moore ERB, and LiPuma JJ
- Subjects
- Bacterial Typing Techniques, DNA, Bacterial genetics, Genes, Bacterial, Multilocus Sequence Typing, Sequence Analysis, DNA, Achromobacter classification, Achromobacter denitrificans classification, Phylogeny
- Abstract
The phenotypic and genotypic characteristics of a historical collection of strains identified as Achromobacter denitrificanswere examined. Sequence analysis of a 765 bp nrdA gene fragment revealed that eight of these strains belonged to the recently described Achromobacter aegrifaciens, Achromobacter mucicolens, and Achromobacter insolitus, and that one strain belonged to Achromobacter xylosoxidans. The analysis also suggested the presence of four novel species of the genus Achromobacter among the remaining strains. The latter was confirmed by multilocus sequence analysis of concatenated nusA, eno, rpoB, gltB, lepA, nuoL andnrdA gene fragments and extensive genotypic and phenotypic characterization. We propose to name these novel species as Achromobacter agilis sp. nov., nom. rev. (type strain LMG 3411T=CCUG 62454T), Achromobacter pestifer sp. nov., nom. rev. (type strain LMG 3431T=CCUG 61959T) , Achromobacter kerstersii sp. nov. (type strain LMG 3441T=CCUG 62449T) and Achromobacter deleyi sp. nov. (type strain LMG 3458T=CCUG 62433T).
- Published
- 2016
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6. Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov.
- Author
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Vandamme PA, Peeters C, Cnockaert M, Inganäs E, Falsen E, Moore ERB, Nunes OC, Manaia CM, Spilker T, and LiPuma JJ
- Subjects
- Bacterial Typing Techniques, Base Composition, Bordetella genetics, Bordetella isolation & purification, DNA, Bacterial genetics, Fatty Acids chemistry, Genotype, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids chemistry, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Ubiquinone chemistry, Achromobacter classification, Bordetella classification, Phylogeny, Respiratory System microbiology
- Abstract
The phenotypic and genotypic characteristics of four Bordetella hinzii-like strains from human respiratory specimens and representing nrdA gene sequence based genogroups 3, 14 and 15 were examined. In a 16S rRNA gene sequence based phylogenetic tree, the four strains consistently formed a single coherent lineage but their assignment to the genus Bordetella was equivocal. The respiratory quinone, polar lipid and fatty acid profiles generally conformed to those of species of the genus Bordetella and were characterized by the presence of ubiquinone 8, of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and several aminolipids, and of high percentages of C16 : 0, cyclo-C17 : 0 and summed feature 2, as major chemotaxonomic marker molecules, respectively. The DNA G+C content was about 66 mol%, which corresponded with that of the high-percentage DNA G+C content genera of the family Alcaligenaceae including the genus Bordetella. DNA–DNA hybridization experiments revealed the presence of three distinct genomospecies and thus confirmed phenotypic differences as revealed by means of extensive biochemical characterization. We therefore propose to formally classify Bordetella genogroups 3, 14 and 15 as Bordetella bronchialis sp. nov. (type strain LMG 28640T = AU3182T = CCUG 56828T), Bordetella sputigena sp. nov. (type strain LMG 28641T = CCUG 56478T) and Bordetella flabilis sp. nov. (type strain LMG 28642T = AU10664T = CCUG 56827T). In addition, we propose to reclassify Achromobacter sediminum into the novel genus Verticia, as Verticia sediminum, gen. nov., comb. nov., on the basis of its unique phylogenetic position, its marine origin and its distinctive phenotypic, fatty acid and polar lipid profile.
- Published
- 2015
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7. Actinomyces oricola sp. nov., from a human dental abscess.
- Author
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Hall V, Collins MD, Hutson RA, Inganäs E, Falsen E, and Duerden BI
- Subjects
- Actinomyces genetics, Actinomyces metabolism, Actinomycosis microbiology, DNA, Bacterial genetics, DNA, Ribosomal genetics, Fatty Acids analysis, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial genetics, RNA, Ribosomal, 16S genetics, Abscess microbiology, Actinomyces classification, Actinomyces isolation & purification, Tooth Diseases microbiology
- Abstract
A previously undescribed Actinomyces-like bacterium was isolated from a human dental abscess. Based on its cellular morphology and the results of biochemical testing the organism was tentatively identified as a member of the genus Actinomyces, but it did not correspond to any currently recognized species of this genus. Comparative 16S rRNA gene sequencing studies showed the bacterium represents a hitherto unknown subline within the genus Actinomyces, clustering within a group of species, which includes Actinomyces bovis, the type species of the genus. Based on biochemical and molecular phylogenetic evidence, it is proposed that the unknown organism recovered from a dental abscess be classified as a new species, Actinomyces oricola sp. nov. The type strain of Actinomyces oricola is R5292(T) (=CCUG 46090(T)=CIP 107639(T)).
- Published
- 2003
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8. Actinobaculum urinale sp. nov., from human urine.
- Author
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Hall V, Collins MD, Hutson RA, Falsen E, Inganäs E, and Duerden BI
- Subjects
- Actinomycetaceae genetics, Actinomycetaceae isolation & purification, Bacterial Typing Techniques, Female, Genes, rRNA, Humans, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S genetics, Reagent Kits, Diagnostic, Sequence Analysis, DNA, Actinomycetaceae classification, Actinomycetales Infections microbiology, Pyuria microbiology, Urine microbiology
- Abstract
A hitherto undescribed Actinomyces-like bacterium was isolated from human urine. Based on its biochemical characteristics, the unidentified bacterium did not correspond to any currently described Actinomyces species or related taxa. Comparative 16S rRNA gene sequencing showed that the unknown bacterium exhibits a specific phylogenetic association with the genus Actinobaculum, but a sequence divergence of > 5% from the two currently recognized members of this genus, Actinobaculum schaalii and Actinobaculum suis, demonstrates that it represents a distinct species. Based on both phenotypic and 16S rRNA gene sequence considerations, it is proposed that the unknown bacterium from urine should be classified as a novel species, Actinobaculum urinale sp. nov. The type strain of Actinobaculum urinale is CCUG 46093(T) (= CIP 107424(T)).
- Published
- 2003
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9. Actinomyces vaccimaxillae sp. nov., from the jaw of a cow.
- Author
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Hall V, Collins MD, Hutson R, Inganäs E, Falsen E, and Duerden BI
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- Actinomyces genetics, Actinomyces metabolism, Actinomycosis microbiology, Animals, Cattle, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S analysis, RNA, Ribosomal, 16S genetics, Actinomyces classification, Actinomycosis veterinary, Cattle Diseases microbiology, Jaw microbiology
- Abstract
A previously undescribed Actinomyces-like bacterium was isolated from a lesion in the jaw of a cow. Based on its cellular morphology and the results of biochemical testing, the organism was tentatively identified as a member of the genus Actinomyces. Comparative 16S rRNA gene sequencing studies showed that the bacterium represents a hitherto unknown species within the genus Actinomyces, and is related to a group of species that includes Actinomyces turicensis and its close relatives. It is proposed that the unknown organism be classified as Actinomyces vaccimaxillae sp. nov. (the type strain is CCUG 46091T =CIP 107423T).
- Published
- 2003
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10. Dysgonomonas mossii sp. nov., from human sources.
- Author
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Lawson PA, Falsen E, Inganäs E, Weyant RS, and Collins MD
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- Base Sequence, DNA, Bacterial genetics, Gram-Negative Anaerobic Bacteria genetics, Gram-Negative Bacterial Infections microbiology, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S analysis, Sequence Analysis, DNA, Gram-Negative Anaerobic Bacteria classification, Gram-Negative Anaerobic Bacteria isolation & purification
- Abstract
Phenotypic and phylogenetic studies were performed on seven unidentified gram-negative, facultatively anaerobic, coccobacillus-shaped organisms isolated from human clinical specimens. Comparative 16S rRNA gene sequencing demonstrated that four of the strains corresponded to Dysgonomonas capnocytophagoides whereas the remaining three isolates represent a new sub-line within the genus Dysgonomonas, displaying greater than 5% sequence divergence with Dysgonomonas capnocytophagoides and Dysgonomonas gadei. The three novel isolates were readily distinguished from D.capnocytophagoides and D. gadei by biochemical tests. The DNA base composition of the novel species was consistent with its assignment to the genus Dysgonomonas. Based on phylogenetic and phenotypic evidence it is proposed that the unknown species, be classified as Dysgonomonas mossii sp. nov. The type strain of Dysgonomonas mossii is CCUG 43457T (= CIP 107079T).
- Published
- 2002
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11. Streptococcus gallinaceus sp. nov., from chickens.
- Author
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Collins MD, Hutson RA, Falsen E, Inganäs E, and Bisgaard M
- Subjects
- Animals, Bacteremia epidemiology, Bacteremia microbiology, Bacterial Typing Techniques, DNA, Ribosomal analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, Poultry Diseases microbiology, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Streptococcal Infections epidemiology, Streptococcal Infections microbiology, Streptococcus genetics, Bacteremia veterinary, Chickens microbiology, Disease Outbreaks, Poultry Diseases epidemiology, Streptococcal Infections veterinary, Streptococcus classification
- Abstract
Three isolates of an unknown Gram-positive, catalase-negative, chain-forming, coccus-shaped organism isolated from an outbreak of septicaemia in a flock of adult broiler parents were characterized by phenotypic and molecular taxonomic methods. Comparative 16S rRNA gene sequencing studies demonstrated that the bacterium represents a new subline within the genus Streptococcus, related to, albeit distinct from, Streptococcus acidominimus, Streptococcus ovis, Streptococcus suis and close relatives. The unknown bacterium was readily distinguished from all recognized streptococcal species by biochemical tests. Based on phylogenetic and phenotypic evidence, it is proposed that the unknown bacterium from chickens be classified as Streptococcus gallinaceus sp. nov. The type strain is CCUG 42692T (= CIP 107087T).
- Published
- 2002
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12. Bifidobacterium scardovii sp. nov., from human sources.
- Author
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Hoyles L, Inganäs E, Falsen E, Drancourt M, Weiss N, McCartney AL, and Collins MD
- Subjects
- Adult, Aged, Aged, 80 and over, Bacterial Typing Techniques, DNA, Ribosomal analysis, Female, Humans, Middle Aged, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Bifidobacterium classification, Bifidobacterium genetics, Blood microbiology, Hip microbiology, Urine microbiology
- Abstract
Five strains of an unusual catalase-negative Gram-positive asporogenous rod-shaped bacterium from human sources were subjected to a polyphasic taxonomic study. The presence of fructose-6-phosphate phosphoketolase, a key enzyme of bifidobacterial hexose metabolism, indicated the strains were members of the genus Bifidobacterium but they did not correspond to any of the recognized species of this genus on the basis of biochemical profiles and whole-cell protein analyses. Comparative 16S rRNA gene sequencing confirmed the placement of the isolates in the genus Bifidobacterium, and demonstrated they represent a hitherto unknown subline within the genus displaying > 5% sequence divergence with recognized species. Based on both phenotypic and phylogenetic criteria, it is proposed that the isolates recovered from human sources be classified as a new species, Bifidobacterium scardovii sp. nov.; the type strain is CCUG 13008T (= DSM 13734T).
- Published
- 2002
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13. Three-hour blood culture detection of Streptococcus pneumoniae.
- Author
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Larsson P, Inganäs E, and Wejstangle Quotation Mark Rightl R
- Published
- 1997
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