10 results on '"Inkeles, Megan S."'
Search Results
2. Cell-type deconvolution with immune pathways identifies gene networks of host defense and immunopathology in leprosy.
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Inkeles, Megan S, Teles, Rosane Mb, Pouldar, Delila, Andrade, Priscila R, Madigan, Cressida A, Lopez, David, Ambrose, Mike, Noursadeghi, Mahdad, Sarno, Euzenir N, Rea, Thomas H, Ochoa, Maria T, Iruela-Arispe, M Luisa, Swindell, William R, Ottenhoff, Tom Hm, Geluk, Annemieke, Bloom, Barry R, Pellegrini, Matteo, and Modlin, Robert L
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Humans ,Leprosy ,Leprosy ,Lepromatous ,Leprosy ,Tuberculoid ,Erythema Nodosum ,Adolescent ,Adult ,Middle Aged ,Female ,Male ,Gene Regulatory Networks ,Young Adult ,Transcriptome ,Lepromatous ,Tuberculoid - Abstract
Transcriptome profiles derived from the site of human disease have led to the identification of genes that contribute to pathogenesis, yet the complex mixture of cell types in these lesions has been an obstacle for defining specific mechanisms. Leprosy provides an outstanding model to study host defense and pathogenesis in a human infectious disease, given its clinical spectrum, which interrelates with the host immunologic and pathologic responses. Here, we investigated gene expression profiles derived from skin lesions for each clinical subtype of leprosy, analyzing gene coexpression modules by cell-type deconvolution. In lesions from tuberculoid leprosy patients, those with the self-limited form of the disease, dendritic cells were linked with MMP12 as part of a tissue remodeling network that contributes to granuloma formation. In lesions from lepromatous leprosy patients, those with disseminated disease, macrophages were linked with a gene network that programs phagocytosis. In erythema nodosum leprosum, neutrophil and endothelial cell gene networks were identified as part of the vasculitis that results in tissue injury. The present integrated computational approach provides a systems approach toward identifying cell-defined functional networks that contribute to host defense and immunopathology at the site of human infectious disease.
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- 2016
3. Imatinib Triggers Phagolysosome Acidification and Antimicrobial Activity against Mycobacterium bovis Bacille Calmette–Guérin in Glucocorticoid-Treated Human Macrophages
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Steiger, Julia, Stephan, Alexander, Inkeles, Megan S, Realegeno, Susan, Bruns, Heiko, Kröll, Philipp, de Castro Kroner, Juliana, Sommer, Andrea, Batinica, Marina, Pitzler, Lena, Kalscheuer, Rainer, Hartmann, Pia, Plum, Georg, Stenger, Steffen, Pellegrini, Matteo, Brachvogel, Bent, Modlin, Robert L, and Fabri, Mario
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Infectious Diseases ,Prevention ,Vaccine Related ,Biodefense ,Aetiology ,2.1 Biological and endogenous factors ,Inflammatory and immune system ,Infection ,Good Health and Well Being ,Anti-Inflammatory Agents ,Antimicrobial Cationic Peptides ,Antitubercular Agents ,Autophagy ,Cells ,Cultured ,Gene Expression Regulation ,Glucocorticoids ,Humans ,Hydrogen-Ion Concentration ,Imatinib Mesylate ,Immunity ,Innate ,Interferon-gamma ,Macrophages ,Mycobacterium bovis ,Phagosomes ,Tuberculosis ,Vacuolar Proton-Translocating ATPases ,Cathelicidins ,Immunology - Abstract
Glucocorticoids are extensively used to treat inflammatory diseases; however, their chronic intake increases the risk for mycobacterial infections. Meanwhile, the effects of glucocorticoids on innate host responses are incompletely understood. In this study, we investigated the direct effects of glucocorticoids on antimycobacterial host defense in primary human macrophages. We found that glucocorticoids triggered the expression of cathelicidin, an antimicrobial critical for antimycobacterial responses, independent of the intracellular vitamin D metabolism. Despite upregulating cathelicidin, glucocorticoids failed to promote macrophage antimycobacterial activity. Gene expression profiles of human macrophages treated with glucocorticoids and/or IFN-γ, which promotes induction of cathelicidin, as well as antimycobacterial activity, were investigated. Using weighted gene coexpression network analysis, we identified a module of highly connected genes that was strongly inversely correlated with glucocorticoid treatment and associated with IFN-γ stimulation. This module was linked to the biological functions autophagy, phagosome maturation, and lytic vacuole/lysosome, and contained the vacuolar H(+)-ATPase subunit a3, alias TCIRG1, a known antimycobacterial host defense gene, as a top hub gene. We next found that glucocorticoids, in contrast with IFN-γ, failed to trigger expression and phagolysosome recruitment of TCIRG1, as well as to promote lysosome acidification. Finally, we demonstrated that the tyrosine kinase inhibitor imatinib induces lysosome acidification and antimicrobial activity in glucocorticoid-treated macrophages without reversing the anti-inflammatory effects of glucocorticoids. Taken together, we provide evidence that the induction of cathelicidin by glucocorticoids is not sufficient for macrophage antimicrobial activity, and identify the vacuolar H(+)-ATPase as a potential target for host-directed therapy in the context of glucocorticoid therapy.
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- 2016
4. Comparison of molecular signatures from multiple skin diseases identifies mechanisms of immunopathogenesis.
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Inkeles, Megan S, Scumpia, Philip O, Swindell, William R, Lopez, David, Teles, Rosane MB, Graeber, Thomas G, Meller, Stephan, Homey, Bernhard, Elder, James T, Gilliet, Michel, Modlin, Robert L, and Pellegrini, Matteo
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Humans ,Skin Diseases ,Interferon-beta ,Microarray Analysis ,Cluster Analysis ,Predictive Value of Tests ,Models ,Genetic ,Interferon-gamma ,Transcriptome ,Models ,Genetic ,Biotechnology ,Genetics ,Prevention ,Human Genome ,Clinical Research ,Emerging Infectious Diseases ,2.1 Biological and endogenous factors ,Skin ,Dermatology & Venereal Diseases ,Clinical Sciences ,Oncology and Carcinogenesis - Abstract
The ability to obtain gene expression profiles from human disease specimens provides an opportunity to identify relevant gene pathways, but is limited by the absence of data sets spanning a broad range of conditions. Here, we analyzed publicly available microarray data from 16 diverse skin conditions in order to gain insight into disease pathogenesis. Unsupervised hierarchical clustering separated samples by disease as well as common cellular and molecular pathways. Disease-specific signatures were leveraged to build a multi-disease classifier, which predicted the diagnosis of publicly and prospectively collected expression profiles with 93% accuracy. In one sample, the molecular classifier differed from the initial clinical diagnosis and correctly predicted the eventual diagnosis as the clinical presentation evolved. Finally, integration of IFN-regulated gene programs with the skin database revealed a significant inverse correlation between IFN-β and IFN-γ programs across all conditions. Our study provides an integrative approach to the study of gene signatures from multiple skin conditions, elucidating mechanisms of disease pathogenesis. In addition, these studies provide a framework for developing tools for personalized medicine toward the precise prediction, prevention, and treatment of disease on an individual level.
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- 2015
5. IL-32 is a molecular marker of a host defense network in human tuberculosis
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Montoya, Dennis, Inkeles, Megan S, Liu, Phillip T, Realegeno, Susan, Teles, Rosane MB, Vaidya, Poorva, Munoz, Marcos A, Schenk, Mirjam, Swindell, William R, Chun, Rene, Zavala, Kathryn, Hewison, Martin, Adams, John S, Horvath, Steve, Pellegrini, Matteo, Bloom, Barry R, and Modlin, Robert L
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Medical Microbiology ,Biomedical and Clinical Sciences ,Clinical Research ,Rare Diseases ,Prevention ,Genetics ,Infectious Diseases ,Antimicrobial Resistance ,Tuberculosis ,2.1 Biological and endogenous factors ,Aetiology ,Infection ,Good Health and Well Being ,Antimicrobial Cationic Peptides ,Biomarkers ,Cell Differentiation ,Gene Expression Profiling ,Humans ,Interferon-gamma ,Interleukin-15 ,Interleukins ,Macrophages ,Mycobacterium tuberculosis ,Vitamin D ,Biological Sciences ,Medical and Health Sciences ,Medical biotechnology ,Biomedical engineering - Abstract
Tuberculosis is a leading cause of infectious disease-related death worldwide; however, only 10% of people infected with Mycobacterium tuberculosis develop disease. Factors that contribute to protection could prove to be promising targets for M. tuberculosis therapies. Analysis of peripheral blood gene expression profiles of active tuberculosis patients has identified correlates of risk for disease or pathogenesis. We sought to identify potential human candidate markers of host defense by studying gene expression profiles of macrophages, cells that, upon infection by M. tuberculosis, can mount an antimicrobial response. Weighted gene coexpression network analysis revealed an association between the cytokine interleukin-32 (IL-32) and the vitamin D antimicrobial pathway in a network of interferon-γ- and IL-15-induced "defense response" genes. IL-32 induced the vitamin D-dependent antimicrobial peptides cathelicidin and DEFB4 and to generate antimicrobial activity in vitro, dependent on the presence of adequate 25-hydroxyvitamin D. In addition, the IL-15-induced defense response macrophage gene network was integrated with ranked pairwise comparisons of gene expression from five different clinical data sets of latent compared with active tuberculosis or healthy controls and a coexpression network derived from gene expression in patients with tuberculosis undergoing chemotherapy. Together, these analyses identified eight common genes, including IL-32, as molecular markers of latent tuberculosis and the IL-15-induced gene network. As maintaining M. tuberculosis in a latent state and preventing transition to active disease may represent a form of host resistance, these results identify IL-32 as one functional marker and potential correlate of protection against active tuberculosis.
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- 2014
6. All-Trans Retinoic Acid–Triggered Antimicrobial Activity against Mycobacterium tuberculosis Is Dependent on NPC2
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Wheelwright, Matthew, Kim, Elliot W, Inkeles, Megan S, De Leon, Avelino, Pellegrini, Matteo, Krutzik, Stephan R, and Liu, Philip T
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Biochemistry and Cell Biology ,Biological Sciences ,Infectious Diseases ,Biodefense ,Rare Diseases ,Nutrition ,Emerging Infectious Diseases ,Tuberculosis ,2.1 Biological and endogenous factors ,Infection ,Good Health and Well Being ,Antineoplastic Agents ,Calcitriol ,Carrier Proteins ,Cholesterol ,Female ,Glycoproteins ,Humans ,Immunity ,Innate ,Lysosomes ,Male ,Monocytes ,Mycobacterium tuberculosis ,Tretinoin ,Tuberculosis ,Pulmonary ,Vesicular Transport Proteins ,Vitamins ,Immunology ,Biochemistry and cell biology - Abstract
A role for vitamin A in host defense against Mycobacterium tuberculosis has been suggested through epidemiological and in vitro studies; however, the mechanism is unclear. In this study, we demonstrate that vitamin A-triggered antimicrobial activity against M. tuberculosis requires expression of NPC2. Comparison of monocytes stimulated with all-trans retinoic acid (ATRA) or 1,25-dihydroxyvitamin D3 (1,25D3), the biologically active forms of vitamin A and vitamin D, respectively, indicates that ATRA and 1,25D3 induce mechanistically distinct antimicrobial activities. Stimulation of primary human monocytes with ATRA did not result in expression of the antimicrobial peptide cathelicidin, which is required for 1,25D3 antimicrobial activity. In contrast, ATRA triggered a reduction in the total cellular cholesterol concentration, whereas 1,25D3 did not. Blocking ATRA-induced cellular cholesterol reduction inhibits antimicrobial activity as well. Bioinformatic analysis of ATRA- and 1,25D3-induced gene profiles suggests that NPC2 is a key gene in ATRA-induced cholesterol regulation. Knockdown experiments demonstrate that ATRA-mediated decrease in total cellular cholesterol content and increase in lysosomal acidification are both dependent upon expression of NPC2. Expression of NPC2 was lower in caseous tuberculosis granulomas and M. tuberculosis-infected monocytes compared with normal lung and uninfected cells, respectively. Loss of NPC2 expression ablated ATRA-induced antimicrobial activity. Taken together, these results suggest that the vitamin A-mediated antimicrobial mechanism against M. tuberculosis requires NPC2-dependent expression and function, indicating a key role for cellular cholesterol regulation in the innate immune response.
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- 2014
7. IgA Vasculitis in the Setting of Biologic Therapy for Psoriasis and Recurrent Cutaneous Methicillin-Resistant Staphylococcus aureus Colonization.
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Young, Peter A., Su, Michael W., Inkeles, Megan S., Kiuru, Maija, Fung, Maxwell A., and Wen En Kuo
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METHICILLIN-resistant staphylococcus aureus ,BACTERIAL colonies ,BIOTHERAPY ,IMMUNOGLOBULIN A ,VASCULITIS ,FOOT pain - Abstract
The article presents a case study of a 47-year-old man who presented with a sudden-onset rash consisting of red bumps on the abdomen and legs which has been on going for months. Physical examination revealed numerous thin purpuric papules on the lower legs, extensor forearms and abdomen; several diagnostic studies were performed and then was diagnosed with IgA vasculitis, a form of cutaneous small-vessel leukocytoclastic vasculitis (LCV).
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- 2022
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8. Drug survival of biologic treatments in psoriasis: a systematic review
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No, Daniel J., primary, Inkeles, Megan S., additional, Amin, Mina, additional, and Wu, Jashin J., additional
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- 2017
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9. Imatinib Triggers Phagolysosome Acidification and Antimicrobial Activity againstMycobacterium bovisBacille Calmette–Guérin in Glucocorticoid-Treated Human Macrophages
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Steiger, Julia, primary, Stephan, Alexander, additional, Inkeles, Megan S., additional, Realegeno, Susan, additional, Bruns, Heiko, additional, Kröll, Philipp, additional, de Castro Kroner, Juliana, additional, Sommer, Andrea, additional, Batinica, Marina, additional, Pitzler, Lena, additional, Kalscheuer, Rainer, additional, Hartmann, Pia, additional, Plum, Georg, additional, Stenger, Steffen, additional, Pellegrini, Matteo, additional, Brachvogel, Bent, additional, Modlin, Robert L., additional, and Fabri, Mario, additional
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- 2016
- Full Text
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10. Drug survival of biologic treatments in psoriasis: a systematic review.
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No, Daniel J., Inkeles, Megan S., Amin, Mina, and Wu, Jashin J.
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CINAHL database , *TUMOR necrosis factors - Abstract
Drug survival measures the length of time until discontinuation of a drug. The length of time a patient remains on a biologic drug is impacted by several factors such as tolerability, side effects, safety profile and effectiveness. To evaluate the long-term drug survival, data of the most commonly prescribed biologic medications used in the treatment of psoriasis, a systematic review was conducted. A literature search using PubMed, the Cochrane Library and the Cumulative Index to Nursing and Allied Health Literature from January 1 2010 to October 28 2016 identified 3734 abstracts. Of which, 36 publications with over 40,000 patients met the inclusion criteria. The median overall drug survival for ustekinumab, adalimumab, infliximab and etanercept was 38.0, 36.5, 26.6 and 24.7 months, respectively. The mean annual drug survival rate of TNF inhibitors was 70%, 57%, 51%, 45% and 41% at years-1, 2, 3, 4 and 5, respectively. The 5-year mean annual drug survival rate of ustekinumab was 87%, 78%, 70%, 71% and 51%, respectively. Based on our findings, ustekinumab appears to have a longer drug survival with lower rates of discontinuation compared to tumor necrosis factor inhibitors. [ABSTRACT FROM AUTHOR]
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- 2018
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- View/download PDF
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